Metagenome / Metatranscriptome Family F069074

Basic Information
Family ID	F069074
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	46 residues
Representative Sequence	DDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Number of Associated Samples	112
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.81 %
% of genes near scaffold ends (potentially truncated)	95.97 %
% of genes from short scaffolds (< 2000 bps)	87.10 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Most Common Taxonomy
Group	Bacteria (55.645 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.097 % of family members)
Environment Ontology (ENVO)	Unclassified (24.194 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.032 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.52% β-sheet: 0.00% Coil/Unstructured: 46.48%
Feature Viewer

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Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF02310	B12-binding	31.45
PF04055	Radical_SAM	17.74
PF01928	CYTH	3.23
PF13536	EmrE	1.61
PF00494	SQS_PSY	1.61
PF15631	Imm-NTF2-2	1.61
PF01593	Amino_oxidase	0.81
PF07690	MFS_1	0.81
PF02586	SRAP	0.81
PF08450	SGL	0.81
PF07811	TadE	0.81
PF00892	EamA	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG1562	Phytoene/squalene synthetase	Lipid transport and metabolism [I]	1.61
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.81
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.81
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.81

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.65 %
Unclassified	root	N/A	44.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.65 %
Unclassified	root	N/A	44.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.65 %
Unclassified	root	N/A	44.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.97 %
Unclassified	root	N/A	44.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.35 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.35 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	24.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.35 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	24.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.52 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.84 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2.42 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.52 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4.84 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.81 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.52 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4.84 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.81 %
Acidobacterium capsulatum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	0.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10060053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300001977\|JGI24746J21847_1059448	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	545	Open in IMG/M
3300002245\|JGIcombinedJ26739_100025455	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5162	Open in IMG/M
3300002245\|JGIcombinedJ26739_100785982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	832	Open in IMG/M
3300002561\|JGI25384J37096_10052460	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1544	Open in IMG/M
3300002853\|draft_1020773	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300004156\|Ga0062589_100552489	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300005330\|Ga0070690_100817525	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	724	Open in IMG/M
3300005364\|Ga0070673_100351499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1308	Open in IMG/M
3300005455\|Ga0070663_100131304	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1902	Open in IMG/M
3300005467\|Ga0070706_100403777	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1272	Open in IMG/M
3300005534\|Ga0070735_10903506	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	518	Open in IMG/M
3300005536\|Ga0070697_101360838	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	634	Open in IMG/M
3300005546\|Ga0070696_100060011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2659	Open in IMG/M
3300005557\|Ga0066704_10443557	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	858	Open in IMG/M
3300005559\|Ga0066700_10175699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1467	Open in IMG/M
3300005560\|Ga0066670_10056424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2058	Open in IMG/M
3300005587\|Ga0066654_10648993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	587	Open in IMG/M
3300005610\|Ga0070763_10424937	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	750	Open in IMG/M
3300005764\|Ga0066903_106135980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	629	Open in IMG/M
3300005921\|Ga0070766_10793961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	645	Open in IMG/M
3300006176\|Ga0070765_101837237	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300006358\|Ga0068871_102273187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	517	Open in IMG/M
3300006806\|Ga0079220_10356728	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	933	Open in IMG/M
3300007255\|Ga0099791_10121987	Not Available	1208	Open in IMG/M
3300009176\|Ga0105242_11337084	Not Available	742	Open in IMG/M
3300009521\|Ga0116222_1058740	Not Available	1669	Open in IMG/M
3300009545\|Ga0105237_10567077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1142	Open in IMG/M
3300009665\|Ga0116135_1127418	Not Available	938	Open in IMG/M
3300009665\|Ga0116135_1404553	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300009698\|Ga0116216_10406759	Not Available	826	Open in IMG/M
3300009700\|Ga0116217_10347617	Not Available	947	Open in IMG/M
3300009700\|Ga0116217_10973575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300009839\|Ga0116223_10192732	Not Available	1248	Open in IMG/M
3300010046\|Ga0126384_11842296	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300010321\|Ga0134067_10066204	Not Available	1189	Open in IMG/M
3300010337\|Ga0134062_10629321	Not Available	556	Open in IMG/M
3300010371\|Ga0134125_10217893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2123	Open in IMG/M
3300010371\|Ga0134125_11920291	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300010371\|Ga0134125_12367326	Not Available	577	Open in IMG/M
3300010379\|Ga0136449_103718178	Not Available	576	Open in IMG/M
3300011120\|Ga0150983_12295571	Not Available	1725	Open in IMG/M
3300012096\|Ga0137389_10394538	Not Available	1181	Open in IMG/M
3300012096\|Ga0137389_10731360	Not Available	850	Open in IMG/M
3300012189\|Ga0137388_10042885	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3617	Open in IMG/M
3300012198\|Ga0137364_11416278	Not Available	514	Open in IMG/M
3300012201\|Ga0137365_11104485	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012208\|Ga0137376_11026373	Not Available	706	Open in IMG/M
3300012356\|Ga0137371_10439028	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300012683\|Ga0137398_10892335	Not Available	620	Open in IMG/M
3300012917\|Ga0137395_10294793	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1148	Open in IMG/M
3300012924\|Ga0137413_11111594	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300014200\|Ga0181526_10060438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium capsulatum	2416	Open in IMG/M
3300014495\|Ga0182015_10991132	Not Available	522	Open in IMG/M
3300014501\|Ga0182024_12023505	Not Available	636	Open in IMG/M
3300015264\|Ga0137403_10042866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4709	Open in IMG/M
3300015371\|Ga0132258_10117839	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6303	Open in IMG/M
3300015371\|Ga0132258_13472844	Not Available	1080	Open in IMG/M
3300015373\|Ga0132257_103525056	Not Available	569	Open in IMG/M
3300016270\|Ga0182036_11402848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300017823\|Ga0187818_10113734	Not Available	1172	Open in IMG/M
3300017943\|Ga0187819_10423321	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300017966\|Ga0187776_10818679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300017973\|Ga0187780_10338955	Not Available	1061	Open in IMG/M
3300017993\|Ga0187823_10138015	Not Available	760	Open in IMG/M
3300017999\|Ga0187767_10046341	Not Available	1061	Open in IMG/M
3300018012\|Ga0187810_10532250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300018043\|Ga0187887_10275696	Not Available	994	Open in IMG/M
3300018043\|Ga0187887_10657486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300018047\|Ga0187859_10622573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300018062\|Ga0187784_11233064	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300018085\|Ga0187772_10216910	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300018088\|Ga0187771_11181749	Not Available	649	Open in IMG/M
3300019789\|Ga0137408_1269463	Not Available	1467	Open in IMG/M
3300020002\|Ga0193730_1164213	Not Available	575	Open in IMG/M
3300020580\|Ga0210403_10188422	Not Available	1692	Open in IMG/M
3300021178\|Ga0210408_11378020	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300021180\|Ga0210396_10094880	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2701	Open in IMG/M
3300021180\|Ga0210396_10662160	Not Available	904	Open in IMG/M
3300021403\|Ga0210397_10121308	Not Available	1793	Open in IMG/M
3300021404\|Ga0210389_11060003	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300021407\|Ga0210383_11431509	Not Available	574	Open in IMG/M
3300021420\|Ga0210394_10231817	Not Available	1614	Open in IMG/M
3300021478\|Ga0210402_10350375	Not Available	1370	Open in IMG/M
3300021559\|Ga0210409_10146860	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2161	Open in IMG/M
3300025924\|Ga0207694_10909152	Not Available	744	Open in IMG/M
3300026334\|Ga0209377_1098459	Not Available	1217	Open in IMG/M
3300026547\|Ga0209156_10263433	Not Available	793	Open in IMG/M
3300027625\|Ga0208044_1156157	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300027641\|Ga0208827_1161407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300027737\|Ga0209038_10219386	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300027768\|Ga0209772_10219321	Not Available	603	Open in IMG/M
3300027846\|Ga0209180_10156345	Not Available	1314	Open in IMG/M
3300027853\|Ga0209274_10482656	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300027855\|Ga0209693_10402723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300027867\|Ga0209167_10232869	Not Available	986	Open in IMG/M
3300027875\|Ga0209283_10562166	Not Available	727	Open in IMG/M
3300027879\|Ga0209169_10286749	Not Available	864	Open in IMG/M
3300027884\|Ga0209275_10019626	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3009	Open in IMG/M
3300027905\|Ga0209415_10476636	Not Available	971	Open in IMG/M
3300028037\|Ga0265349_1024455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300028807\|Ga0307305_10500219	Not Available	545	Open in IMG/M
3300028906\|Ga0308309_11214042	Not Available	650	Open in IMG/M
3300030494\|Ga0310037_10342343	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300030707\|Ga0310038_10338309	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300030707\|Ga0310038_10517647	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300030862\|Ga0265753_1052128	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300030940\|Ga0265740_1003610	Not Available	1165	Open in IMG/M
3300031708\|Ga0310686_115393438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8405	Open in IMG/M
3300031771\|Ga0318546_10797430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300031962\|Ga0307479_11591254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300031981\|Ga0318531_10005745	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4388	Open in IMG/M
3300031996\|Ga0308176_10531506	Not Available	1199	Open in IMG/M
3300032160\|Ga0311301_10319962	All Organisms → cellular organisms → Bacteria → Acidobacteria	2462	Open in IMG/M
3300032205\|Ga0307472_102634855	Not Available	513	Open in IMG/M
3300032783\|Ga0335079_10013341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	9383	Open in IMG/M
3300032783\|Ga0335079_10504854	Not Available	1289	Open in IMG/M
3300032783\|Ga0335079_11009084	Not Available	848	Open in IMG/M
3300032805\|Ga0335078_11346080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300032828\|Ga0335080_10343942	Not Available	1610	Open in IMG/M
3300032955\|Ga0335076_11046900	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300033158\|Ga0335077_11262968	Not Available	719	Open in IMG/M
3300033807\|Ga0314866_011591	Not Available	1184	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.13%
Host-Associated	Host-Associated	8.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.45%
Aquatic	Environmental → Aquatic	9.68%
Plants	Host-Associated → Plants	8.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.45%
Freshwater	Environmental → Aquatic → Freshwater	9.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.23%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.84%
Loam	Environmental → Terrestrial → Soil → Loam	13.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.10%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.61%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.10%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.45%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.23%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.23%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.61%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Hydrocarbon Resource Environments	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Hydrocarbon Resource Environments	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.81%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002853	PDIso9.ppmwps2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028037	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030940	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100600533	3300001545	Forest Soil	SVGWHDVQDAREQADERYNSLRDANFELERARITLLRATGELESWVGAAK*
JGI24746J21847_10594481	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	DTATLHELDDARTQAAERYLAAQDAAIELARARIALMRSTGELEKWVQAGQD*
JGIcombinedJ26739_1000254556	3300002245	Forest Soil	LSERYNSLQDANFELERARITLLRATGELEAWVGAGN*
JGIcombinedJ26739_1007859823	3300002245	Forest Soil	GWHDVQDAREQADERYNSLRDANFELERARITLLRATGELESWVGAAK*
JGI25384J37096_100524601	3300002561	Grasslands Soil	TATLHDVXDARMQANERYNALQDTSFELQKARITLLRATDELAAWAGVGK*
draft_10207731	3300002853	Hydrocarbon Resource Environments	SVSASLHDLDDARNQANEHYDAMQDTNFELERARISLLRTTGDLEAWIGVGK*
Ga0062589_1005524891	3300004156	Soil	ATLHELDDARAQAAERYLASQDAALELDRARIALMRSTGGLEKWVEAGQE*
Ga0070690_1008175252	3300005330	Switchgrass Rhizosphere	SAAWHDVQDAREQVNQRYNSLQDANFELERARITLLRATGELASWAGAGQ*
Ga0070673_1003514992	3300005364	Switchgrass Rhizosphere	VQDAREQVNERYNSLQDANFELERARITLLRATGELASWAGAGQ*
Ga0070663_1001313041	3300005455	Corn Rhizosphere	AAWHDVQDAREQVNERYNSLQDANFELERARITLLRATGELASWAGAGQ*
Ga0070706_1004037772	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DVGTASFHDVEDARNQATERFNALQDANFEVERARIALLRATGELESWVGIGK*
Ga0070735_109035061	3300005534	Surface Soil	NERYVALADTNFELQRARISLLRATGDLETWVGVGK*
Ga0070697_1013608381	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	WHDVQDAREQLNERYNSLQDANFELERARITLLRATGELASWAGAGQ*
Ga0070696_1000600111	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	DVQDAREQLNERYNSLQDATFELERAGITLLRATGELEAWVNAGK*
Ga0070665_1010611101	3300005548	Switchgrass Rhizosphere	RYHAFQSADFELQRAKIGLLRATGDLESWVGIPK*
Ga0066704_104435572	3300005557	Soil	TATLHDVEDARSQANERYNTLQDSSFELQKARITLLRAMDELATWAGVGK*
Ga0066700_101756992	3300005559	Soil	DVEDARSQANERYNTLQDSSFELQKARITLLRAMDELATWAGVGK*
Ga0066670_100564241	3300005560	Soil	ANERFGALQDADFELERARIALLRATGELESWVGVGK*
Ga0066654_106489932	3300005587	Soil	QVRLDAGTASFHDLEDARDQANERFNALQDVNFEVERARIALLRATGELENWVGVGK*
Ga0070763_104249371	3300005610	Soil	LHDLDDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK*
Ga0066903_1061359801	3300005764	Tropical Forest Soil	RNQVNERFGALQDANFELERARITLIRATGELENWVGIGK*
Ga0070766_107939611	3300005921	Soil	RNQVNERYDALQDTNFDLQRARISLLRTTGELEDWVGVGK*
Ga0070765_1018372371	3300006176	Soil	RYNQLQDANFELDRSRIELLRATGDLEAWVEAAPSQ*
Ga0068871_1022731871	3300006358	Miscanthus Rhizosphere	VEDAREQASERFISLGDTSYELEKARITLLRATGELESWVGLAR*
Ga0079220_103567281	3300006806	Agricultural Soil	QDERYNSLQDANFQLERARITLLRATGDLERWVGVGK*
Ga0099791_101219872	3300007255	Vadose Zone Soil	ATLHDVEDARMQANERYNALQDTSFELQKARITLLRATDELAAWAGVGK*
Ga0105242_113370841	3300009176	Miscanthus Rhizosphere	EQVNERYNSLQDANFELERARITLLRATGELAGWVGAGQ*
Ga0116222_10587401	3300009521	Peatlands Soil	HEQYDALQDTNFELQRARISLLRATGELEAWVGVTK*
Ga0105237_105670771	3300009545	Corn Rhizosphere	AADTATLHELDDARTQAAERYLAAQDAAIELARARIALMRSTGELEKWVQAGQD*
Ga0116135_11274181	3300009665	Peatland	NERYDALQDTNFDLQRARISLLRATGELEDWVGVGK*
Ga0116135_14045531	3300009665	Peatland	KSDLDATQTRVDSGSATLHDLDDARNQVNERYDALQDTNFELQRARIGLLRVTGELEDWVGVGK*
Ga0116216_104067591	3300009698	Peatlands Soil	HDLDDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK*
Ga0116217_103476172	3300009700	Peatlands Soil	ATLHDLDDARNQAHEQYDALQDTNFELQRARISLLRATGELEAWVGVTK*
Ga0116217_109735751	3300009700	Peatlands Soil	DDARNQAHEQYDALQDTNFELQRARISLLRATGELEAWVGVAK*
Ga0116223_101927322	3300009839	Peatlands Soil	EQYDALQDTNFELQRARISLLRATGELEAWVGVAK*
Ga0126384_118422962	3300010046	Tropical Forest Soil	ANERYNGLLDASFELQRARIALLRVTGELAKWVSGQK*
Ga0134067_100662041	3300010321	Grasslands Soil	ALQVRLDAGTASFHDLEDARDQANERFNALQDANFEVERARIALLRATGELENWVGVGK*
Ga0134062_106293211	3300010337	Grasslands Soil	MDDARTQSNERYHAFQSADFELQRARIGLLRATGELEIWAGVPK*
Ga0134125_102178931	3300010371	Terrestrial Soil	QVRVDAGSATLHDMDDARTQSNERYHAFQSADFELQRARIGLLRATGELETWVGVPK*
Ga0134125_119202912	3300010371	Terrestrial Soil	EQLNERYNSLQDANFELERARITLLRATGELASWAGAVQ*
Ga0134125_123673262	3300010371	Terrestrial Soil	QDAREQLNERYNSLQDATFELERAGITLLRATGELEAWVNAGK*
Ga0136449_1037181781	3300010379	Peatlands Soil	EQYDALQDTNFELQRARISLLRATGELEAWVGVTK*
Ga0150983_122955712	3300011120	Forest Soil	ERYDALQDTSFELERARISLLRATGDLEAWVGVGK*
Ga0137389_103945381	3300012096	Vadose Zone Soil	QVNERYNSLQDANFELERARITLLRATGELEAWVGAGK*
Ga0137389_107313601	3300012096	Vadose Zone Soil	ATLHDVEDARGQANQRYNALQDVNFELERARIALLRATGELETWVGAGK*
Ga0137388_100428851	3300012189	Vadose Zone Soil	VRVDAGTATVHDAEDARNQADERFNALQDANFQLERARIILLRATGVLETWVGAGR*
Ga0137364_114162782	3300012198	Vadose Zone Soil	DAGSATIHDLQDARDQANERYNVLQDSSFELERAQIALLRATGELAIWVGISK*
Ga0137365_111044852	3300012201	Vadose Zone Soil	RYHALQSADFELERAKIGLLRATGELENWVGVPK*
Ga0137376_110263731	3300012208	Vadose Zone Soil	IHDLQDARDQANDRYNILQDSNFELERAQIALLRTTGDLANWVGVSK*
Ga0137371_104390282	3300012356	Vadose Zone Soil	KINERYHALQSAAFELERAKIGLLRATGELENWVGVPK*
Ga0137398_108923352	3300012683	Vadose Zone Soil	HEVQDAREQSSERYNSLQDANFQLERARITLLRATGGLEGWVGVGK*
Ga0137395_102947931	3300012917	Vadose Zone Soil	ERFNALQDANFEVERARIALLRATGELENWVGVGK*
Ga0137413_111115941	3300012924	Vadose Zone Soil	SNERYHALQSANFELERARIGLLRATGELEGWLGIPK*
Ga0181526_100604383	3300014200	Bog	VDSGSATLHDLDDARNQVNERYDALEDTNFELQRARISLLRATGELEDWVGVGK*
Ga0182015_109911322	3300014495	Palsa	DEADARNQVNERYNALQDSNFDLERARITLLRSTGDLEKWARGEN*
Ga0182024_120235052	3300014501	Permafrost	QANLQALETRVDSGTAALHDEADARNQANERYNALQDSNFELQRARITLLRSTGDLEKWAMGEN*
Ga0137403_100428664	3300015264	Vadose Zone Soil	MFPSPSPLESHHVRIDAGTANLHDMDDARNQSNERYHALQSADFELERAKIGLLRATGELEDWVGVPK*
Ga0132258_101178391	3300015371	Arabidopsis Rhizosphere	NLHELDDARNQTNQLYHTLQSANFELQRAKIALLRTTGELENWIGVSK*
Ga0132258_134728442	3300015371	Arabidopsis Rhizosphere	NERYNSLQDATFELERAGITLLRATGELEAWVNAGK*
Ga0132257_1035250562	3300015373	Arabidopsis Rhizosphere	EQLNERYNSLQDATFELERAGITLLRATGELEAWVNAGK*
Ga0182036_114028481	3300016270	Soil	TATLHDEDDARNLANERFNTLEDTTFELERAQIALLRATGELSSWVGLAK
Ga0187818_101137341	3300017823	Freshwater Sediment	EYQLAESNRDAVQVRMDAGTATLRDGEDARTQENTRYDALQDANFELERARITLLRSTGDLDNWVGVGK
Ga0187819_104233212	3300017943	Freshwater Sediment	DDARNQANEQYDALQDTNFELQRARISLLRATGELEAWVGVIK
Ga0187776_108186791	3300017966	Tropical Peatland	DDARNQANERYNTLEDTTFEVERAQIALLRATGELSSWVGVAK
Ga0187780_103389551	3300017973	Tropical Peatland	EDEARNQANERYVALQDTRFELQRARIALLRAIGDLSSWLGLSK
Ga0187823_101380151	3300017993	Freshwater Sediment	TRVNAGNGTWHDAEDAREQADARYNALQDASFDLERSRIALLRATGGLATWLGVIP
Ga0187767_100463411	3300017999	Tropical Peatland	EDDARNQASERYDTLQDTRFELQRARIALLRATGDLGSWLGLSSK
Ga0187810_105322501	3300018012	Freshwater Sediment	ANERYDALQDTNFELERARINLLRATGELESWVGVGK
Ga0187887_102756962	3300018043	Peatland	ARVLVTERFNSLQDADFELERARIGLLRVTGDLPAWVGLNTAGPNK
Ga0187887_106574861	3300018043	Peatland	TRVDSGSATLHDLDDARNQVNERYDALEDTNFELQRARISLLRATGELEDWVGVGK
Ga0187859_106225731	3300018047	Peatland	SNLDATQTRVDSGSATLHDLDDARNQANEHYDALQDTNFELQRARISLLRVTGELEAWVGVGK
Ga0187784_112330641	3300018062	Tropical Peatland	NQANERYDTLQDTRFELQRARIALLRATGDLSSWLGLNK
Ga0187772_102169101	3300018085	Tropical Peatland	SERYGALQDANFELQRARITLLRATGEISDWVGVEK
Ga0187771_111817492	3300018088	Tropical Peatland	LHEEDDAHNQANERYDTLQDTRFELQRARIALLRATGDLSSWLGLAK
Ga0137408_12694632	3300019789	Vadose Zone Soil	TASFHDVEDARDQANERFNALQDANFEVERARIALLRASGELGNWVGVGK
Ga0193730_11642132	3300020002	Soil	ERYNSLQDANFQLERARITLLRATGGLEDWIGGSK
Ga0210403_101884222	3300020580	Soil	TANWHDVQDAREQSSDRYNSLQDANFQLERARITLLRATGELESWVGVGK
Ga0210408_113780201	3300021178	Soil	AKNQAAEHYDALQDANFELQRARISLLRATGEIESWVGVGK
Ga0210396_100948804	3300021180	Soil	VDSGSATLRDLDDARNQANERYDALQDTNFELQRARISLLRVTGELEDWVGIGK
Ga0210396_106621601	3300021180	Soil	GRATLHDLDDARSQANERYDALQDTNFELQRARISLLRATGELEAGVGVGK
Ga0210397_101213082	3300021403	Soil	DARNQVNERYDALQDTNFELQRARISLLRATGELEAWVGIQK
Ga0210389_110600031	3300021404	Soil	GSATHHDLDDARSQVNERYDALQDTNFELQRARISLLRATGELEAWVGIQK
Ga0210383_114315092	3300021407	Soil	QVNERYDALQDTNFELQRARISLLRVTGELEAWVGVGK
Ga0210394_102318172	3300021420	Soil	VDSGSATLHELDDARGQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0210402_103503752	3300021478	Soil	LSERYNSLQDANFELERARITLLRATGELEAWVGAGN
Ga0210409_101468603	3300021559	Soil	VQDAREQLSERYNSLQDANFELERARITLLRATGELEAWIGAGN
Ga0207694_109091521	3300025924	Corn Rhizosphere	GSAAWHDVQDAREQVNERYNSLQDANFELERARITLLRATGELASWAGAGQ
Ga0209377_10984592	3300026334	Soil	DAGTATLHDVEDARSQANERYNTLQDSSFELQKARITLLRAMDELATWAGVGK
Ga0209156_102634332	3300026547	Soil	QANDRYNALQDANFELQRARISLLRATGELEGWVGVGK
Ga0208044_11561571	3300027625	Peatlands Soil	SATLHDLDDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0208827_11614071	3300027641	Peatlands Soil	SATLHDLDDARNQANEQYDALQDTNFELQRARISLLRATGELEAWVGVTK
Ga0209038_102193862	3300027737	Bog Forest Soil	AATLHDLDDARNQVNERYDALQDTNFDLQRARISLLRATGELEDWVGVGK
Ga0209772_102193212	3300027768	Bog Forest Soil	TLHDAEDARIQANEHYNQLQDANFELQRGRIELLRTTGDLESWVEGGNSN
Ga0209180_101563451	3300027846	Vadose Zone Soil	ERYNALQDTSFELQKARITLLRATDELAAWAGVGK
Ga0209274_104826561	3300027853	Soil	DDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0209693_104027231	3300027855	Soil	VDAGGATVHDLDDARNQANERYDALQDTNFELERARISLLRVTGELEAWVGVGK
Ga0209167_102328692	3300027867	Surface Soil	LDALQIRVDAGSATLHDLDDANNQVNERYDALQDTNFELQRARISLLRATGELEAWVGAG
Ga0209283_105621662	3300027875	Vadose Zone Soil	EQSNERYSSLQDANFELERARITLLRAMGELESWLGVGK
Ga0209169_102867491	3300027879	Soil	ARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0209275_100196261	3300027884	Soil	RGQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0209415_104766361	3300027905	Peatlands Soil	ATLHDLDDARNQAHEQYDALQDTNFELQRARISLLRATGELEAWVGVTK
Ga0265349_10244551	3300028037	Soil	TQTRVDSGSATLHDLDDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0307305_105002192	3300028807	Soil	EQTSERYNSLQDANFQLERARITLLRATGELEGWIGVGK
Ga0308309_112140421	3300028906	Soil	RYNQLQDANFELDRSRIELLRATGDLEAWVEAAPSQ
Ga0310037_103423432	3300030494	Peatlands Soil	LDDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0310038_103383091	3300030707	Peatlands Soil	IQVRVDAGSATLHDLDDARNQAHEQYDALQDTNFELQRARISLLRATGELEAWVGVTK
Ga0310038_105176471	3300030707	Peatlands Soil	RANERFDALQDANFELQRARILLLRATGDLEAWVGVASK
Ga0265753_10521282	3300030862	Soil	ADSGSATLHDLDDARSQANERYDALQDPNFELQRARISLLRATGELEAWVGVGK
Ga0265740_10036102	3300030940	Soil	DSGSATLHDLDDARSQANERYDALQDTNFELQRARISLLRATGELEAWVGVGK
Ga0310686_1153934387	3300031708	Soil	KSTLDAAQVRMESGSATLHDAEDARVQSNERFGALQDANFELDRARITLLRLTGELGSWVGVTN
Ga0318546_107974302	3300031771	Soil	ANERFNTLEDTTFELERAQIALLRATGELSSWVGLAK
Ga0307479_115912541	3300031962	Hardwood Forest Soil	AEMTEKYGALQDANFQLVRAKIGLLRATGELEAWAGQAK
Ga0318531_100057456	3300031981	Soil	LSERYIALQDTNFELQRARIGLLRSTGELEKWINGGL
Ga0308176_105315062	3300031996	Soil	QQVNERYLSLQDMKFELEKSRIMLLRATGELENWVGK
Ga0311301_103199621	3300032160	Peatlands Soil	ATLHDLDDARNQAHEQYDALQDTNFELQRARISLLRATGELEAWVGVAK
Ga0307472_1026348552	3300032205	Hardwood Forest Soil	QDAHEQPNERYNSLQDANFQLERARITLLRATGNLESWIGVGK
Ga0335079_100133411	3300032783	Soil	RTNAEGLYNQLQDANFELERARITLLRATGSLESWVMAGN
Ga0335079_105048542	3300032783	Soil	KDQSNQRFDALQDSGFELEKARIALLRATGELADWAGVSK
Ga0335079_110090841	3300032783	Soil	EEGNGTLHDEEDARNQANERYNALQNADFELERGRIALLRATGELDAWVGVSK
Ga0335078_113460802	3300032805	Soil	DDARNLANERYNTLEDTTFELERAQIALLRATGELSSWVGLAK
Ga0335080_103439421	3300032828	Soil	AQVRVDSGTATLHDLDDARTQASERYNALQDASFQLQRARIGLLRATGELENWVGIAK
Ga0335076_110469002	3300032955	Soil	DLDDARTQADERYDALQDANFQLERARIALLRATGQLESWVGIAK
Ga0335077_112629682	3300033158	Soil	AQVRMNSGAVTIHDLDDARTQADERYDALQDANFQLERARIALLRATGQLESWVGVAK
Ga0314866_011591_1026_1169	3300033807	Peatland	LHEEEDARTQVNERYNSLQDADFQLERARIMLLRSTGDLSSWAGVDK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F069074

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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