NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F069014

Metagenome / Metatranscriptome Family F069014

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F069014
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 53 residues
Representative Sequence PGAAPPNMRKDLHLVLELARELGVTLYLGTQASLVADAGVATGHDDPRL
Number of Associated Samples 103
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(13.710 % of family members)
Environment Ontology (ENVO) Unclassified
(50.806 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.194 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.77%    β-sheet: 0.00%    Coil/Unstructured: 66.23%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF02627CMD 17.74
PF03401TctC 16.94
PF07883Cupin_2 5.65
PF09382RQC 3.23
PF00596Aldolase_II 3.23
PF01176eIF-1a 1.61
PF01613Flavin_Reduct 1.61
PF10282Lactonase 1.61
PF00563EAL 1.61
PF02668TauD 1.61
PF00535Glycos_transf_2 1.61
PF12697Abhydrolase_6 0.81
PF00146NADHdh 0.81
PF00990GGDEF 0.81
PF00296Bac_luciferase 0.81
PF04909Amidohydro_2 0.81
PF05726Pirin_C 0.81
PF02798GST_N 0.81
PF06629MipA 0.81
PF12706Lactamase_B_2 0.81
PF11799IMS_C 0.81
PF13354Beta-lactamase2 0.81
PF16036Chalcone_3 0.81
PF02775TPP_enzyme_C 0.81
PF00682HMGL-like 0.81
PF00072Response_reg 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 17.74
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 17.74
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 16.94
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 1.61
COG1853FMN reductase RutF, DIM6/NTAB familyEnergy production and conversion [C] 1.61
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 1.61
COG2200EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)Signal transduction mechanisms [T] 1.61
COG3434c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domainsSignal transduction mechanisms [T] 1.61
COG4943Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domainsSignal transduction mechanisms [T] 1.61
COG5001Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domainSignal transduction mechanisms [T] 1.61
COG0650Formate hydrogenlyase subunit HyfCEnergy production and conversion [C] 0.81
COG1005NADH:ubiquinone oxidoreductase subunit 1 (chain H)Energy production and conversion [C] 0.81
COG1741Redox-sensitive bicupin YhaK, pirin superfamilyGeneral function prediction only [R] 0.81
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.81
COG3713Outer membrane scaffolding protein for murein synthesis, MipA/OmpV familyCell wall/membrane/envelope biogenesis [M] 0.81


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.71%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.45%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere6.45%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.03%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere4.03%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere4.03%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.23%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.23%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater2.42%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.42%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.42%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen2.42%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere2.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.42%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.42%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.42%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment1.61%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.61%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.61%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.61%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.61%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil1.61%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.61%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.81%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton0.81%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.81%
Freshwater Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat0.81%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater0.81%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.81%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.81%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886011Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005044Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005583Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRFEnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300009078Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009087Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009678Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011400Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2EnvironmentalOpen in IMG/M
3300011425Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2EnvironmentalOpen in IMG/M
3300011429Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2EnvironmentalOpen in IMG/M
3300012006Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101BEnvironmentalOpen in IMG/M
3300012232Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2EnvironmentalOpen in IMG/M
3300012773Freshwater microbial communities from Lake Simoncouche, Canada - S_140212_E_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012775Freshwater microbial communities from Lake Montjoie, Canada - M_140625_M_mt (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013295northern Canada Lakes metatranscriptome co-assemblyEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014208Groundwater microbial communities from an aquifer near a municipal landfill in Southern Ontario, Canada - Groundwater well OW334 metaGEnvironmentalOpen in IMG/M
3300014303Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleA_D1EnvironmentalOpen in IMG/M
3300014306Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLB_D1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014878Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10DEnvironmentalOpen in IMG/M
3300015360Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018070Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019884Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2EnvironmentalOpen in IMG/M
3300020215Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_5EnvironmentalOpen in IMG/M
3300021066Soil microbial communities from Anza Borrego desert, Southern California, United States - S3_10-13CEnvironmentalOpen in IMG/M
3300021602Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L222-5mEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025289Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027396Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepC_8hEnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027819Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300031170Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_SEnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031232Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031726Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034354Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MRS1b_0799.000033602162886011Miscanthus RhizosphereRWKKMLMPGAPGSALPNLRKDLHTALALAQELNVNLYLGRQASLIADASVATGRDAPLL
JGI11615J12901_1057829523300000953SoilLKQIIRDGIANSSVLALWNDMGPRWKNMLGPSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
JGI24738J21930_1008998423300002075Corn RhizosphereTPPNLRKDLHLVLELAQDLGVNLFVGTQASLIADAGVATGHKDPNL*
Ga0062593_10297729113300004114SoilNMRKDLHLVLQMAEALGVPLHIASQASRTADSGQATGLYSPDA*
Ga0062590_10014432313300004157SoilKDLHLVLQLAGELGVPLHVASQSSLIADAGLATGHADPRL*
Ga0062595_10250213713300004479SoilELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0062591_10059500413300004643SoilRKDLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF*
Ga0071351_107910023300005044Freshwater, PlanktonPDVPLPNLRKDLHLVLEMAESLGVSLPVARHASEVADSGAATGHDDPAL*
Ga0065712_1063100923300005290Miscanthus RhizosphereMLKATAPGAMPPNLRKDLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF*
Ga0065715_1042742113300005293Miscanthus RhizosphereWKKMLEATPPGTTPPNLRKDLHLVLELAQDLGVNLFVGTQASLIADAGVATGHKDPNL*
Ga0070676_1040687423300005328Miscanthus RhizosphereVLALWNDMGPRWKNMLGPSAPGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0070670_10040719223300005331Switchgrass RhizospherePPNLRKDLHLVLEFARELGVNLYIGGQASLIADAGVATGHDSEQF*
Ga0070669_10109221713300005353Switchgrass RhizosphereVLALWNDMGPRWKNMLAPSAPGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0070675_10052308933300005354Miscanthus RhizosphereLWNDMGPRWKKMLEASAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0070663_10064739623300005455Corn RhizosphereGPRWKKMLMPGAPGSALPNLRKDLHTALALAQELNVNLYLGRQASLIADASVATGRDAPLL*
Ga0070678_10026550413300005456Miscanthus RhizospherePDAMPPNLRKDLHLVLEFARELGVNLYIGGQASLIADAGVATGHDSEQF*
Ga0068867_10055265413300005459Miscanthus RhizosphereNSSVLALWNDMGPRWKKMLEASAPGSELPNMRKDLRTALELARELGVKLPVGTQVSQIADAGIATGRDNPLL*
Ga0068867_10067768423300005459Miscanthus RhizosphereSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0068867_10214975713300005459Miscanthus RhizospherePPPNMRKDLHLVLQLAGELGVQLHVASQSSLIAAAGLATGHADPRL*
Ga0070685_1069384213300005466Switchgrass RhizosphereLPNMRKDLHTALELERELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0070672_10002708213300005543Miscanthus RhizosphereNLRKDLHLVLELAQDLGVNLFVGTQASLIADAGVATGHKDPNL*
Ga0070672_10026801413300005543Miscanthus RhizosphereLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF*
Ga0070686_10071995423300005544Switchgrass RhizosphereKKMLEASGPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0070704_10186312423300005549Corn, Switchgrass And Miscanthus RhizosphereKGMLAASAPGAPPPNMRKDLHLVLQLAGELGVPLHVASQSSLIADAGLATGHADPRL*
Ga0049085_1015030913300005583Freshwater LenticRKDLHLVLEYARELGVNLYLGTQGSMIADAGIASGHDNPLL*
Ga0068864_10157573013300005618Switchgrass RhizosphereVLALWNDMGPRWKNMLGPSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0068864_10249140323300005618Switchgrass RhizosphereMLEASAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0068870_1058773123300005840Miscanthus RhizosphereWNDMGPRWKNMLGPSAPGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0068870_1087328713300005840Miscanthus RhizospherePRWKKMLMPGAPGSALPNLRKDLHTALALAQELNVNLYLGRQAALIADASVATGRDAPLL
Ga0068863_10119722123300005841Switchgrass RhizosphereEASAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0075422_1035235913300006196Populus RhizosphereWKDMLKPAAPGAEVPNLRKDLHTVLELARELGVDLPIGKEASRIADAGVATGHDKPLL*
Ga0075420_10030930413300006853Populus RhizosphereWKGMLAPGAPGAPPPNMRKDLHLVLQLAEELGVPLQIASQASRIADAGKATGQGDPRL*
Ga0079216_1133134523300006918Agricultural SoilPNLRKDLHLVLQMAEALGVPLHIASQASRIADSGQATGLYSPGA*
Ga0105106_1075986623300009078Freshwater SedimentPNLRKDLHLALEMAHELGVTLYLGTQGSLVADAGVATGHGDPAL*
Ga0105107_1074809223300009087Freshwater SedimentLRKDLHLVLEMAQSLGVTLYMGTQGSLVADAGVATGHADPRL*
Ga0105245_1087881713300009098Miscanthus RhizosphereRKDLHLVLEFARELGVNLYVGGQESLIADAGVATGHDSEQF*
Ga0105243_1036734913300009148Miscanthus RhizosphereKGMLKATAPGTIPPNMRKDLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF*
Ga0105243_1203048413300009148Miscanthus RhizosphereGPRWKKMLMPGAPGSALPNLRKDLHTALALAQELNVNLYLGRQAALIADASVATGRDAPLL*
Ga0114966_1003119513300009161Freshwater LakeGLWEAMGPRWKSMLEAAPPGAELPNMRKDLHTALELARELGVNLPVGTQASLIAVAGVATGHDNPLL*
Ga0114966_1048017823300009161Freshwater LakePPPNLRKDLHLVLEFARELGVDLHLGSEASRVADGGIATGHDDLRA*
Ga0105238_1077851613300009551Corn RhizosphereAPGSALPNLRKDLHTALALAQELNVNLYLGRQASLIADASVATGRDAPLL*
Ga0105252_1038067113300009678SoilGPRWKDMMKPGEPGSPLPNLRKDMHTALELAREVGVELKVGAHASRVADSGAATGHDNPLL*
Ga0105239_1062469433300010375Corn RhizosphereNLRKDLHTALALAQELNVNLYLGRQASLIADASVATGRDAPLL*
Ga0134127_1137709223300010399Terrestrial SoilKDLHLVLEFARELGVNLYIGGQASLIADAGVATGHDSEQF*
Ga0134122_1146933913300010400Terrestrial SoilILRKDQHLALELAKELGVPLYLGTQASRIADAGIATGHDNPLL*
Ga0137312_100567133300011400SoilPGAPPPNMRKDLHLVLELAGKLGVALPVATQASHTADAGVATGHGDPRL*
Ga0137441_102151313300011425SoilGPRWKDMLKPAAPGAELPNLRKDLHTVLELARELGVELHVGTHASRIADAGVATGHDNPLF*
Ga0137455_105885533300011429SoilKDMLKPAAPGAELPNLRKDLHTALELARELGVELHVGTQASRIADSGVATGHDNPLL*
Ga0137455_110018513300011429SoilLVLEFARELGVNLYIGGQASLIADAGVATGHDSEQF*
Ga0119955_115835823300012006FreshwaterSAAGAALPNLRKDLHLVLEFARELGVSLPIATLGSEVADAGLATGHRDPRL*
Ga0137435_102200413300012232SoilPGAEVPNLRKDLHTVLELARELGVELHVGTHASRIADAGVATGHDNPLF*
Ga0137435_102421413300012232SoilPGAEVPNLRKDLHTVLELARELGVELHVGTHASRIADAGVATGHDNPLL*
Ga0138290_112722213300012773Freshwater LakeAALPNLRKDLHLVLEFARELGVSLPIATLGSEVADAGLATGHRDPRL*
Ga0138280_101725613300012775Freshwater LakeRKDLHLVLEFARALGVSLPIATRGSEVADAGLATGHRDPRL*
Ga0164298_1031667723300012955SoilPPGTTPPNLRKDLHLVLELAQDLGVNLFVGTQASLIADAGVATGHKDPNL*
Ga0164309_1132917713300012984SoilIIRDGIADSNVLALWNDMGPRWKNMLAPSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDIPLL*
Ga0170791_1570001813300013295FreshwaterGAALPNLRKDLHLVLEFARALGVSLPIATRGSEVADTGLATGHRDPRL*
Ga0163162_1021432313300013306Switchgrass RhizosphereLRKDLHLVLELAQDLGVNLFVGTQASLIADAGVATGHKDPNL*
Ga0163162_1084623813300013306Switchgrass RhizospherePGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL*
Ga0172379_1094473113300014208GroundwaterAAAPGAPLPNMRKDLHLVLELAQELGVELHIAGNASRVADAGIATGHDNSLI*
Ga0075358_104235013300014303Natural And Restored WetlandsLAMWQDMGPRWKSMLAAGAPGADLPNMRKDLHTALELARELGLSLPIGTQVSQVADAGIATGHDNPLL*
Ga0075346_113098513300014306Natural And Restored WetlandsGMLKPAAPGVPLPNMRKDLHLVLELAQELGVELHIGDHASRVADAGKAAGHDHPLI*
Ga0163163_1318639223300014325Switchgrass RhizosphereRDGIANSSVLALWNDMGPRWKKMLEASAPGSELPNMRKDLRTALELARELGVKLPVGTQVSQIADAGIATGRDNPLL*
Ga0157380_1031970213300014326Switchgrass RhizospherePAAPGAEVPNLRKDLHTVLELARELGVDLPIGKEASRIADAGVATGHDNPLL*
Ga0180065_106464213300014878SoilELGPRWKDMLKPGVPGAELPNLRKDLHTALGLARELGVELRVGTQASRVADSGVATGHDNPLL*
Ga0163144_1107949313300015360Freshwater Microbial MatLRKDLHLVLDLAKELGVALPVATEASRTADTGRATGHDDRRL*
Ga0163161_1115579423300017792Switchgrass RhizosphereLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF
Ga0184631_1041238013300018070Groundwater SedimentDGIANSNVLAMWEDMGPRWKNMLGPSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0184624_1005737433300018073Groundwater SedimentGSALPNLRKDLHTALALAQELNVNLYLGRQASLIADASVATGRDAPLL
Ga0184628_1039100023300018083Groundwater SedimentDMGPRWKNMLAPSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0190265_1031492413300018422SoilPGTPPPNMRKDLHLVLQLAGELGVPLHIASQASRIADAGAATGHGDPRL
Ga0190265_1138039513300018422SoilDAAPPNMRKDLHLVLELAHELGVTLYLGTQGSLIADAGVATGHKEPGL
Ga0190265_1312390933300018422SoilWKGMLAASAPGTPPPNMRKDLHLVLELAGELGVPLHIASQASRIADAGLATGHDDPRL
Ga0190275_1306647923300018432SoilLPNMRKDLHLVLQMAEALGVPLRIASQASRVADSGAATGQGDARL
Ga0190268_1187818113300018466SoilLAQSAPGAPPPNMRKDLHLVLELAGKLGVLLPVAAQASHTADAGVATGHGDPRL
Ga0190270_1068605313300018469SoilTAPDATPPNMRKDLHLVLEMAHALGVPLFLGTQGSLVADSGVATGHDDPKL
Ga0190270_1239302223300018469SoilIPPGATPPNMRKDLHLVLDMAHELGVTLYLGTQGSLIADAGVATGHDDPKL
Ga0190274_1277550423300018476SoilPAAPGTPLPNIRKDLHSALELARELGLALPVGTLASRIADGGAAVGHADPKI
Ga0190274_1297293623300018476SoilMRKDLHTALELAQELGVELPLATHASGIADAGSATGRDDPRL
Ga0190264_1137729123300019377SoilGAAPPNMRKDLHLVLELARDLDLPLYLGTQASLVADAGVATGHDDPRL
Ga0190264_1141414023300019377SoilPNMRKDLHLVLQLAGELGVPLHIASQASLTADAGVATGQGDPRL
Ga0193741_103360113300019884SoilLASRWKGMLAASAPGAPPPNLRKDLHLVLQLAAQLGVPLPIASQASRVADAGMATGHGDSRL
Ga0196963_1059988223300020215SoilPNLRKDLHLVLELAGELGVPLHIASQASHIADAGVATGNSG
Ga0196980_102203913300021066SoilLGGRWKAMLAPPAQGAPLPNLRKDLHLVLELAGELGVPLHIASQASRIADAGVATGNSG
Ga0194060_1006062843300021602Anoxic Zone FreshwaterMLKPAPPRTGLHNMRKDLHSALALALAHELGVASYLGPQASQIADTGVATGHDNPAL
Ga0222622_1063397323300022756Groundwater SedimentPPGTTPPNLRKDLHLVLELAQDLGVNLFVGTQASLIADAGVATGHKDPNL
Ga0209002_1047420223300025289SoilMRKDLHSALELAHELGVVSYLGTQASLIADAGVATGHDNPLL
Ga0207656_1017437123300025321Corn RhizosphereKDLHVALALAQELNVNLYLGRQAALIADASVATGRDAPLL
Ga0207643_1002312553300025908Miscanthus RhizosphereTAPGTIPPNMRKDLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF
Ga0207643_1072604213300025908Miscanthus RhizosphereDLGPRWKKMLMPGAPGSALPNLRKDLHTALALAQELNVNLYLGRQASLIADASVATGRDAPLL
Ga0207662_1018221933300025918Switchgrass RhizosphereGIANSSVLALWNDMGPRWKKMLEASAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0207681_1055492033300025923Switchgrass RhizospherePGAAPPNMRKDLHLVLELARELGVTLYLGTQASLVADAGVATGHDDPRL
Ga0207681_1092830013300025923Switchgrass RhizospherePSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0207694_1080645113300025924Corn RhizosphereAPGSALPNLRKDLHTALALAQELNVNLYLGRQAALIADASVATGRDAPLL
Ga0207659_1166844713300025926Miscanthus RhizosphereMLKATPPDAMPPNLRKDLHLVLEFARELGVNLYIGGQASLIADAGVATGHDSEQF
Ga0207704_1180248523300025938Miscanthus RhizosphereMLEASAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0207651_1166083723300025960Switchgrass RhizosphereWKKMLEASGPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0207658_1043443033300025986Switchgrass RhizosphereQIIRDGIANSNVLALWNDMGPRWKNMLGPSAPGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0207639_1177859423300026041Corn RhizosphereGAPGSALPNLRKDLHTALALAQELNVNLYLGRQAALIADASVATGRDAPLL
Ga0207641_1137693323300026088Switchgrass RhizosphereKKMLEASAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0207676_1021546833300026095Switchgrass RhizosphereTPPDAMPPNLRKDLHLVLEFARELGVNLYIGGQASLIADAGVATGHDSEQF
Ga0207698_1001504773300026142Corn RhizosphereRWKKMLMPGAPGSALPNLRKDLHTALALAQELNVNLYLGRQAALIADASVATGRDAPLL
Ga0255146_109511513300027396FreshwaterLPNMRKDLHMVLDLARALGVPVYLGAQGSLIADAGVATGHDDPTL
Ga0209074_1055500623300027787Agricultural SoilGMLESAAPGAELPNLRKDMHSALELARKLGVDLKIGAYASGIADAGVAIGHDDPLL
Ga0209726_1046339313300027815GroundwaterPGAALPNLRKDLHSALELAHELGVVSYLGTQASLIADAGIATGHDNPAL
Ga0209726_1050213623300027815GroundwaterELGPRWKNMLKPAPPGASLPNLRKDLHSALELAHELGVTSYLGTQASLIADAGVATGHDNPLL
Ga0209514_1013983713300027819GroundwaterVLQVWDELGPRWKNMLKPALPGASLPNLRKDLHSALELAHELGVVSYLGTQASLIADAGIATGHDNPLL
Ga0247822_1104235213300028592SoilGPRWKNMLAPSAPGSELPNMRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPL
Ga0247820_1094955923300028597SoilGAPLPNMRKDLHLVLQLAEELGVPLQIASQASRIADAGKATGQGDPRL
Ga0307498_1010571023300031170SoilLALWNDMGPRWKNMLGPSAPGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPLL
Ga0307497_1072459713300031226SoilVPNLRKDLHTVLELARELGVDLKLGTHASRIADSGVAIGHSDPLL
Ga0302323_10143621923300031232FenKDLHLVIEFARELGVDLHIGTQASTIADAGIATGHDSDRF
Ga0302323_10248004013300031232FenAPGATPANLPKDLHLVLEFARELGVELPLGTHASQLADAGTATGRDDPRT
Ga0310813_1098650613300031716SoilKDLHLVLEFARELGVNLYIGGQASLIADAGAATGHDSEQF
Ga0302321_10220252223300031726FenLHLVLEFARELGVELPLGTHASQLADAGTATGRDDPRT
Ga0307405_1093097813300031731RhizosphereMLAASAPGTPPPNMRKDLHLVLQLAGELGVPLPIASLASRIADAGAATGHGDPRL
Ga0310900_1172453523300031908SoilGPRWKNMLGPSAPGSELPNLRKDLHTALELARELGVKLPVGTQVSQVADAGIATGRDNPL
Ga0307412_1073520213300031911RhizosphereEATAPGATLPNMRKDLHLVLELAREIAVPLFVGSQASLVADAGVATGHDDPRL
Ga0307412_1133299313300031911RhizosphereKDLHLVLQLAGELGVPLYMASQASLIADAGVATGQADPRL
Ga0307412_1170217723300031911RhizosphereWKGMLAATPPDVTPPNLRKDLHLALEYARELGVNLYVGTQASLIADSGNATGREDPRL
Ga0310885_1056780223300031943SoilWKGMLAPSAPGAPLPNMRKDLHLVLQMAEALGVPLHIASQASRTADSGQATGLYSPDA
Ga0307414_1090272913300032004RhizosphereLHLVLELAREIAVPLFVGSQASLVADAGVATGHDDPRL
Ga0307472_10255747923300032205Hardwood Forest SoilKDMLKPAAIGAEVPNLRKDLHTAIELARELGVDLRIGAHASRIADSGVATGHDDRLL
Ga0364943_0016297_2110_22563300034354SedimentGAELPNLRKDLHTVLELARELGVELHVGTHASRIADAGVATGHDNPLF


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