Metagenome / Metatranscriptome Family F068962

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068962
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	50 residues
Representative Sequence	GYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR
Number of Associated Samples	108
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.65 %
% of genes near scaffold ends (potentially truncated)	87.10 %
% of genes from short scaffolds (< 2000 bps)	82.26 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.484 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (10.484 % of family members)
Environment Ontology (ENVO)	Unclassified (33.065 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.032 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.75% β-sheet: 22.50% Coil/Unstructured: 73.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF12681	Glyoxalase_2	9.68
PF00903	Glyoxalase	8.06
PF09674	DUF2400	3.23
PF02954	HTH_8	2.42
PF02661	Fic	1.61
PF02738	MoCoBD_1	1.61
PF07519	Tannase	0.81
PF12833	HTH_18	0.81
PF01425	Amidase	0.81
PF07040	DUF1326	0.81
PF00723	Glyco_hydro_15	0.81
PF03972	MmgE_PrpD	0.81
PF12704	MacB_PCD	0.81
PF00069	Pkinase	0.81
PF01613	Flavin_Reduct	0.81
PF13520	AA_permease_2	0.81
PF10162	G8	0.81
PF05638	T6SS_HCP	0.81
PF00248	Aldo_ket_red	0.81
PF04140	ICMT	0.81
PF01571	GCV_T	0.81
PF00180	Iso_dh	0.81
PF03444	HrcA_DNA-bdg	0.81
PF14559	TPR_19	0.81
PF13620	CarboxypepD_reg	0.81
PF00535	Glycos_transf_2	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.23
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.81
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.81
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.81
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.81
COG3157	Type VI protein secretion system component Hcp (secreted cytotoxin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.81
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.81
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.48 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.48 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.48 %
Unclassified	root	N/A	14.52 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	68.55 %
Unclassified	root	N/A	14.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.61 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	52.42 %
Unclassified	root	N/A	14.52 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.81 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.16 %
Unclassified	root	N/A	14.52 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	5.65 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.16 %
Unclassified	root	N/A	14.52 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	5.65 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.16 %
Unclassified	root	N/A	14.52 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	5.65 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.81 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	45.16 %
Unclassified	root	N/A	14.52 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	5.65 %
Mesorhizobium loti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	0.81 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.81 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001139\|JGI10220J13317_11740260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300004081\|Ga0063454_100436619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	893	Open in IMG/M
3300005093\|Ga0062594_101235821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300005330\|Ga0070690_101560008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300005336\|Ga0070680_101426176	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300005340\|Ga0070689_100870193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300005355\|Ga0070671_100113745	All Organisms → cellular organisms → Bacteria	2274	Open in IMG/M
3300005367\|Ga0070667_100170251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	1922	Open in IMG/M
3300005440\|Ga0070705_100937670	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300005441\|Ga0070700_100019367	All Organisms → cellular organisms → Bacteria	3927	Open in IMG/M
3300005458\|Ga0070681_10045417	All Organisms → cellular organisms → Bacteria → Proteobacteria	4395	Open in IMG/M
3300005526\|Ga0073909_10006564	All Organisms → cellular organisms → Bacteria	3457	Open in IMG/M
3300005529\|Ga0070741_11277677	Not Available	615	Open in IMG/M
3300005535\|Ga0070684_100120002	All Organisms → cellular organisms → Bacteria → Acidobacteria	2365	Open in IMG/M
3300005542\|Ga0070732_10115982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1584	Open in IMG/M
3300005543\|Ga0070672_101224013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300005549\|Ga0070704_101296398	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300005557\|Ga0066704_10859222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	562	Open in IMG/M
3300005558\|Ga0066698_10638172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300005568\|Ga0066703_10160061	Not Available	1355	Open in IMG/M
3300005575\|Ga0066702_10492659	Not Available	747	Open in IMG/M
3300005577\|Ga0068857_102123820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300005578\|Ga0068854_102277058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300005618\|Ga0068864_102657954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	506	Open in IMG/M
3300005764\|Ga0066903_102424636	All Organisms → cellular organisms → Bacteria → Acidobacteria	1015	Open in IMG/M
3300005764\|Ga0066903_107623752	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300005836\|Ga0074470_10677227	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300005842\|Ga0068858_101327897	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300005842\|Ga0068858_102364593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005843\|Ga0068860_100448528	All Organisms → cellular organisms → Bacteria → Acidobacteria	1282	Open in IMG/M
3300005843\|Ga0068860_102713195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300006046\|Ga0066652_101355607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300006237\|Ga0097621_100358682	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300006797\|Ga0066659_10600545	Not Available	893	Open in IMG/M
3300006806\|Ga0079220_10906097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300006854\|Ga0075425_100001998	All Organisms → cellular organisms → Bacteria	20151	Open in IMG/M
3300006854\|Ga0075425_101046600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300006854\|Ga0075425_101175589	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300006871\|Ga0075434_101085227	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300006880\|Ga0075429_100233904	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300006881\|Ga0068865_101505279	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006903\|Ga0075426_10000974	All Organisms → cellular organisms → Bacteria	20141	Open in IMG/M
3300006903\|Ga0075426_10038414	All Organisms → cellular organisms → Bacteria	3423	Open in IMG/M
3300006903\|Ga0075426_10448878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300006904\|Ga0075424_102760737	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300006914\|Ga0075436_100063978	All Organisms → cellular organisms → Bacteria	2542	Open in IMG/M
3300006914\|Ga0075436_100228888	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300006914\|Ga0075436_101377621	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300007265\|Ga0099794_10799087	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300009012\|Ga0066710_102800056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300009092\|Ga0105250_10446935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	580	Open in IMG/M
3300009100\|Ga0075418_11508471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300009177\|Ga0105248_10172028	All Organisms → cellular organisms → Bacteria → Acidobacteria	2441	Open in IMG/M
3300009177\|Ga0105248_12694777	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300009239\|Ga0103858_10095770	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300009551\|Ga0105238_12632413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300010046\|Ga0126384_12060405	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300010358\|Ga0126370_10322414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1236	Open in IMG/M
3300010358\|Ga0126370_11051473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
3300010358\|Ga0126370_12208132	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300010359\|Ga0126376_11491126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300010362\|Ga0126377_13061445	Not Available	540	Open in IMG/M
3300012207\|Ga0137381_11804285	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300012210\|Ga0137378_11092266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300012469\|Ga0150984_123660272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300012896\|Ga0157303_10104773	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300012912\|Ga0157306_10075075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	919	Open in IMG/M
3300012917\|Ga0137395_10785741	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300012960\|Ga0164301_11767230	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300012971\|Ga0126369_10621614	Not Available	1152	Open in IMG/M
3300012972\|Ga0134077_10293365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300012988\|Ga0164306_11172302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300012989\|Ga0164305_11241800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300013296\|Ga0157374_11157806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300013297\|Ga0157378_12932370	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300014269\|Ga0075302_1166608	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	544	Open in IMG/M
3300014968\|Ga0157379_12391004	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	527	Open in IMG/M
3300014969\|Ga0157376_11359961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21	741	Open in IMG/M
3300015371\|Ga0132258_12630416	All Organisms → cellular organisms → Bacteria → Acidobacteria	1257	Open in IMG/M
3300015373\|Ga0132257_100976196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300016404\|Ga0182037_11810721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300017792\|Ga0163161_11526571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	587	Open in IMG/M
3300025905\|Ga0207685_10380746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300025906\|Ga0207699_10342770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1053	Open in IMG/M
3300025911\|Ga0207654_10340337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1030	Open in IMG/M
3300025912\|Ga0207707_11334288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300025917\|Ga0207660_11286674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300025920\|Ga0207649_10123805	All Organisms → cellular organisms → Bacteria → Acidobacteria	1747	Open in IMG/M
3300025938\|Ga0207704_11671972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	547	Open in IMG/M
3300025940\|Ga0207691_10982425	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300025981\|Ga0207640_12190520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300026035\|Ga0207703_10308673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1445	Open in IMG/M
3300026035\|Ga0207703_11093632	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300026067\|Ga0207678_11835631	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300026116\|Ga0207674_11239651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_64_15	715	Open in IMG/M
3300026332\|Ga0209803_1314896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300026530\|Ga0209807_1236808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300026550\|Ga0209474_10474607	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	634	Open in IMG/M
3300027775\|Ga0209177_10089059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300027821\|Ga0209811_10129562	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300027903\|Ga0209488_10358906	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300028799\|Ga0307284_10393222	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031226\|Ga0307497_10273994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300031226\|Ga0307497_10485517	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300031719\|Ga0306917_11492925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300031720\|Ga0307469_10910318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300031820\|Ga0307473_10870220	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	648	Open in IMG/M
3300031862\|Ga0315280_10022408	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6668	Open in IMG/M
3300031938\|Ga0308175_102914433	Not Available	533	Open in IMG/M
3300031962\|Ga0307479_10713521	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300032163\|Ga0315281_11537176	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300032205\|Ga0307472_102463954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300033486\|Ga0316624_12202975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.48%
Host-Associated	Host-Associated	39.52%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.03%
Plants	Host-Associated → Plants	39.52%
Aquatic	Environmental → Aquatic	6.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.71%
Freshwater	Environmental → Aquatic → Freshwater	5.65%
Roots	Host-Associated → Plants → Roots	1.61%
Sediment	Environmental → Aquatic → Sediment	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.74%
Loam	Environmental → Terrestrial → Soil → Loam	13.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.29%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.42%
Lake	Environmental → Aquatic → Freshwater → Lake	1.61%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.61%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.81%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.06%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.03%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.03%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.23%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.23%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.61%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.81%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	0.81%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.81%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009239	Microbial communities of water from Amazon river, Brazil - RCM11	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026492	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS5	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10220J13317_117402602	3300001139	Soil	YDAAGYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVGSTMYPGPGCVVPNR*
Ga0063454_1004366191	3300004081	Soil	GDNGVNAWYDASGYEADDKCAWHNLYQMTNGGFWVQPEFSNGGTVTASGFTATYPRVSSAVGGCVVPNR*
Ga0062594_1012358211	3300005093	Soil	YEADDKCAWHNLYRMAEGGFMVQPEYSNGGGPAPGGGSYPGPGCVVPNQQP*
Ga0070690_1015600082	3300005330	Switchgrass Rhizosphere	WYDSAGYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0070680_1014261761	3300005336	Corn Rhizosphere	MISKRRAWHNLYQMTNGGFWVQPEYSNSGTVGSTTYPGPGCVVPNR*
Ga0070689_1008701932	3300005340	Switchgrass Rhizosphere	VTDPMLNAWFDNAGYEADDKCAWHHLYQMANGGFYVQPEFSNGVLVGGVSYPTPAGCVVP
Ga0070671_1001137451	3300005355	Switchgrass Rhizosphere	DDAGYEADDKCAWHNLYRMANGGFMVQPEFSNGGVAPYPGPGCVVP*
Ga0070673_1009132822	3300005364	Switchgrass Rhizosphere	DDKCAWHNLYHMAEGGFVVQPEFSNGGGAYPGPGCIVPNPPPLP*
Ga0070667_1001702513	3300005367	Switchgrass Rhizosphere	SGYEADDKCAWHNLYRMAEGGFMVQPEYSNGGGPAPGGGSYPGPGCVVPNQQP*
Ga0070705_1009376702	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0070700_1000193674	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VTDPQLNAWYDSQGYEADDKCAWHNLYHMAEGGFVVQPEFSNGGGAYPGPGCIVPNPPPLP*
Ga0070700_1010709182	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	CAWHNLYRMAEGGFAVQPEYSNGGGTALGGGSYPGPGCVVPILQP*
Ga0070681_100454171	3300005458	Corn Rhizosphere	YDNAGYEADDKCAWHNLYRMANGGFVVQPEFSNGGGSSPVGVAYPGPGCVVP*
Ga0073909_100065647	3300005526	Surface Soil	CAWHNLYQTAGSGAWVQPEFSNGNGANPYPGPGCVVPNQ*
Ga0070741_112776771	3300005529	Surface Soil	ADDKCAWHNLYQITGISAGGFWMQPEFSNGGSAAASGFTATYPGPGCVVPNR*
Ga0070684_1001200022	3300005535	Corn Rhizosphere	GYEADDKCAWHNLYQMTGGGFWVQPEYSNGGTKNGTSYPGPGCVVPNR*
Ga0070732_101159823	3300005542	Surface Soil	TDPGDNNVNAWYDAAGDEADDKCAWHNLYQMTNGGFWVQPEYSNGGGSTPSGPYPGPGCVVPNQP*
Ga0070672_1012240131	3300005543	Miscanthus Rhizosphere	GYEADDKCAWHNLYQLNRTAGLNFWVQPEYSNGGVVGSSTYPGPGCVKP*
Ga0070704_1012963982	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	DDKCAWHNLYQMTIGGFWVQPEYSNGGTVNRSGFTARYPGPGCVVPSK*
Ga0066704_108592222	3300005557	Soil	DDKCAWHNLYQMTNGGFWVQPEYSNGGTRTASGFTATYPGPGCVVPNR*
Ga0066698_106381722	3300005558	Soil	ADDKCAWHNLYQTARGHFWVQPEYSNGGGIYPGPGCVVPK*
Ga0066703_101600612	3300005568	Soil	DGIGYEADDKCAWHNLYQMTRGGFWVQPEYSNGGPNLQYGVIFPGPGCIVPNR*
Ga0066702_104926592	3300005575	Soil	EADDKCAWHNLYQTAAGNFWVQPEYSNGSPGGVPYPGPGCVVPR*
Ga0068857_1021238201	3300005577	Corn Rhizosphere	DKCAWHNLYQMTNGGFTVQPEYSNGGTVNGVPYPGPGCVVPNQQP*
Ga0068854_1022770581	3300005578	Corn Rhizosphere	KCAWHNLYQTSSGHFWVQPEYSNGLAGTPGPGCVVP*
Ga0068864_1026579542	3300005618	Switchgrass Rhizosphere	DDKCAWHHLYQMADGGFWVQPEYSNGDGNIYPGAGCVVP*
Ga0066903_1002051371	3300005764	Tropical Forest Soil	GGFWVQPEYSNGGTTSNSGFTATYPGPGCVVPNR*
Ga0066903_1024246362	3300005764	Tropical Forest Soil	DKCAWHNLYQMTSGGFWVQPEYSNGGNGYPGPGCVVPNR*
Ga0066903_1076237521	3300005764	Tropical Forest Soil	LYQTQNGNYWVQPEFSNGGTVNGTSYPGTGCVVPR*
Ga0074470_106772271	3300005836	Sediment (Intertidal)	PGDSNINAWYDASGYEADDKCAWHNLYQMTKGSFWVQPEFSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0068858_1013278972	3300005842	Switchgrass Rhizosphere	DKCAWHNLYQINNGSFWVQPEYSNGGTVTRSGFAATYPAGCIVPNR*
Ga0068858_1023645931	3300005842	Switchgrass Rhizosphere	GYEADDKCAWHNLYQMTRGGFWVQPEYSNGGTRTASGFTATYPGPGCVVPNR*
Ga0068860_1004485283	3300005843	Switchgrass Rhizosphere	GTAWYDSAGYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR
Ga0068860_1027131951	3300005843	Switchgrass Rhizosphere	KCAWHNLYQMTAGGFWVQPEYSNGGTVTASGFTASYPHGCVVPNQGTTSQRPH*
Ga0066652_1013556072	3300006046	Soil	DDKCAWHNLYQTANGGFWVQPEYSNGGNGFPGPGCVVPR*
Ga0097621_1003586822	3300006237	Miscanthus Rhizosphere	TDPQLNAWYDRSGYEADDKCAWHNLYQMAAGGFWVQPEYSNGGTVTASGFTASYPHGCVVPNQGTTSQRPH*
Ga0066659_106005451	3300006797	Soil	TRGGFWVQPEYSNGGPNLQYGVIFPGPGCIVPNR*
Ga0079220_109060972	3300006806	Agricultural Soil	WYDSSGYEADDKCAWHHLYQMADGGFWVQPEYSNGDGNIYPGAGCVVP*
Ga0075425_10000199819	3300006854	Populus Rhizosphere	TDPGDNGVNAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGITTFPHGCVVPNR*
Ga0075425_1010466001	3300006854	Populus Rhizosphere	VNAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGLTRNGSTFPQHGCVVPNR*
Ga0075425_1011755891	3300006854	Populus Rhizosphere	EAVTDPDLDAWYDGAGYEADDKCAWHNLYQTTSGYWVQPEYSNGNSATPYPGPGCVVANK
Ga0075434_1010852271	3300006871	Populus Rhizosphere	AGYEADDKCAWHNLYQMTRGGYWVQPEYSNGGNSTYPGPGCVVPQ*
Ga0075429_1002339041	3300006880	Populus Rhizosphere	EADDKCAWHNLYHMAEGGFVVQPEFSNGGGAYPGPGCIVPNPPPLP*
Ga0068865_1015052792	3300006881	Miscanthus Rhizosphere	PDLNAWYDSAGYEADDKCAWHNLYQINNGSFWVQPEYSNGGTVTRSGFTATYPAGCIVPNR*
Ga0075426_100009741	3300006903	Populus Rhizosphere	GDNGVNAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGITTFPHGCVVPNR*
Ga0075426_100384144	3300006903	Populus Rhizosphere	DAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGLTRNGSTFPQHGCVVPNR*
Ga0075426_104488781	3300006903	Populus Rhizosphere	GYEADDKCAWHNLYQTANGFWVQPEFSNKDNGCVVP*
Ga0075424_1027607371	3300006904	Populus Rhizosphere	EADDKCAWHNLYQLNRSAGLNFWVQPEYSNGGGVYPGPGCVKP*
Ga0075436_1000639783	3300006914	Populus Rhizosphere	DNGVNAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGLTRNGSTFPQHGCVVPNR*
Ga0075436_1002288883	3300006914	Populus Rhizosphere	NAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGLTRNGSTFPQHGCVVPNR*
Ga0075436_1013776211	3300006914	Populus Rhizosphere	EADDKCAWHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0099794_107990872	3300007265	Vadose Zone Soil	AWYDSQGYEADDKCAWHNLYQMTKGGFWVQPEYSNGTSSPYPGPGCIVPNK*
Ga0066710_1028000562	3300009012	Grasslands Soil	SHEIREAVTDPGDNNVNAWYDAVGYEADDKCAWHNLYQMTHGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR
Ga0105250_104469351	3300009092	Switchgrass Rhizosphere	AWYDDQGYEADDKCAWHNLYQMAEGGFRVQPEYSNGGGQAPGDGLPYPGAGCVVPPQ*
Ga0075418_115084712	3300009100	Populus Rhizosphere	DPQLNAWYDSDGYEADDKCAWHNLYRMAEGGFAVQPEYSNGGGKYPGPGCVVP*
Ga0105248_101720281	3300009177	Switchgrass Rhizosphere	LGTAWYDSSGYEADDKYAWHNLYQMTNDGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0105248_126947771	3300009177	Switchgrass Rhizosphere	KCAWHNLYQMSGGGYWVQPEYSNGGTKNGTTYPGPGCVVPNR*
Ga0103858_100957702	3300009239	River Water	PDLNAWYDASGYEADDKCAWHNLYRTTNGSFWVQPEYSNGGGTRPGASGSYPGPGCVVPNR*
Ga0105238_126324132	3300009551	Corn Rhizosphere	YEADDKCAWHNLYQTANGFWVQPEFSNKDNGCVVP*
Ga0126384_120604052	3300010046	Tropical Forest Soil	WFDAAGYEADDKCAWHNLYQTASGHFWVQPEYSNGLSGNPGPGCIVP*
Ga0126321_14728731	3300010145	Soil	GGFWVQPEYSNGGTVNRSGFTATYPGPGCVVPNR*
Ga0126370_103224142	3300010358	Tropical Forest Soil	DAAGYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVGSATYPGPGCVVPNR*
Ga0126370_110514731	3300010358	Tropical Forest Soil	DAAGYEADDKCAWHNLYQMTNGGFWVQPEYSNGGTVGNVTYPGQGCIVPNR*
Ga0126370_122081321	3300010358	Tropical Forest Soil	DKCAWQHLYQTANGNYWVQPEFSNGGTVGGKTYPGPGCVVPR*
Ga0126376_114911262	3300010359	Tropical Forest Soil	WHNLYQMTNGGFLGQSEYSNGGTVGSATYPAPGCVVPNR*
Ga0126377_130614452	3300010362	Tropical Forest Soil	YEADDKCAWHNLYQTTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNP*
Ga0134125_100479221	3300010371	Terrestrial Soil	NLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0137381_118042851	3300012207	Vadose Zone Soil	IREAVSDSLGTAWFDASGYEADDKCAWHNLYQMTSGGFWVQPEFSNGGTRTASGFTATYPGPGCIVPNR*
Ga0137378_110922661	3300012210	Vadose Zone Soil	DNGVNAWYDAAGYEADDKCAWHNLYQMSNGGFWVQPEYSNGGTVTASGFSATYPGPGCVVPNR*
Ga0150985_1037061873	3300012212	Avena Fatua Rhizosphere	LYQMSNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0150984_1236602722	3300012469	Avena Fatua Rhizosphere	WYDSTGREADDKCAWHNLYQMSNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0157303_101047731	3300012896	Soil	KCAWHNLYQMSNGGFWVQPEYSNGGIVTASGFTATYKKGCVVPNR*
Ga0157306_100750751	3300012912	Soil	DALGTAWYDAAGYEADDKCAWHNLYQMTTGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0137395_107857411	3300012917	Vadose Zone Soil	SNANAWYDRRGYEADDKCAWHNLYQLNRPAGLNFWVQPEYSNGGTVGTTTYPGSGCVVP*
Ga0153915_126317031	3300012931	Freshwater Wetlands	LYQMANGAFWVQPEYSNGGSANAVSTASYPGPGCVKP*
Ga0164301_117672302	3300012960	Soil	TDPDLNAWYDSVGYEADDKCAWHNLYQMSSGGFWVQPEYSNGLSGKPGPGCIVP*
Ga0153916_102096671	3300012964	Freshwater Wetlands	QMTNGGFWVQPEYSNGGTTTASGFTATYPGPGCVVPNK*
Ga0126369_106216141	3300012971	Tropical Forest Soil	AWYDASGYEADDKCAWHNLYQMTTGGFWVQPEYSNGGTVTRSGFKATYPGPGCVVPNR*
Ga0134077_102933652	3300012972	Grasslands Soil	VYDAAGYEADDKCAWHNLYRTTNGGFWVQPEYSNGGNSTYPGPGCVVPQ*
Ga0164306_111723022	3300012988	Soil	GYEADDKCAWHNLYQMTAGGFWVQPEYSNGGTVTASGFTASYPHGCVVPNQGTTSQRPH*
Ga0164305_112418001	3300012989	Soil	ADDKCAWHNLYQMSSGGFWVQPEYSNGLSGKPGPGCIVP*
Ga0157374_111578062	3300013296	Miscanthus Rhizosphere	YDDQGYEADDKCAWLNLYRMAEGGFMVQPEYSNGGGPAPGGGSYPGPGCVVPNQQP*
Ga0157378_129323701	3300013297	Miscanthus Rhizosphere	DKCAWHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0075302_11666082	3300014269	Natural And Restored Wetlands	EADDKCAWHNLYRMSDGGFAVQPEYSNGGTVGGVSYPGPGCAVPIQ*
Ga0163163_119315852	3300014325	Switchgrass Rhizosphere	GGFWVQPEFSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0157379_123910041	3300014968	Switchgrass Rhizosphere	QGYEADDKCAWHNLYRMAEGGFMVQPEYSNGGGPAPGGGSYPGPGCVVPNQQP*
Ga0157376_113599612	3300014969	Miscanthus Rhizosphere	AWFDIQGYEADDKCAWHNLYQTTTGGYWVQPEYSNGNGNNPYPGPGCVVPN*
Ga0132258_126304161	3300015371	Arabidopsis Rhizosphere	WHNLYQMTNGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR*
Ga0132257_1009761962	3300015373	Arabidopsis Rhizosphere	CAWHNLYQTATGNYWVQPEYSNGGNSTYPGPGCVVPR*
Ga0182037_118107211	3300016404	Soil	AGYEADDKCAWHNLYQTANGGFWVQPEFSNGTAAPYPGPGCVVPK
Ga0163161_115265712	3300017792	Switchgrass Rhizosphere	FDNAGYEADDKCAWHHLYQMANGGFYVQPEFSNGGLVGGVSYPTPAGCVVP
Ga0182022_10124021	3300019785	Fen	TICMYQTTRGGFWVQPEYSNGGTRTASGFTATYPGPGCVVPNK
Ga0207685_103807462	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	VNAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGGTVTRGGVTATYPGPGCVVPNR
Ga0207699_103427702	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ITDPVNAWWESSSGYEADDKCAWHNLYQQTGGAWVQPEYSNGLTRNGSTFPQHGCVVPNR
Ga0207654_103403371	3300025911	Corn Rhizosphere	MISKRRAWHNLYQMTNGGFWVQPEYSNSGTVGSTTYPGPGCVVPNR
Ga0207707_113342882	3300025912	Corn Rhizosphere	YEADDKCAWHNLYHMAEGGFVVQPEFSNGGGAYPGPGCIVPNPPPLP
Ga0207660_112866741	3300025917	Corn Rhizosphere	DDKCAWHNLYRMADGGFAVQPEYSNGGGTAPGGGSYPGPGCIVPVPQP
Ga0207649_101238051	3300025920	Corn Rhizosphere	TDSLGTAWYDAQGYEADDKCAWHNLYQMTGGGFWVQPEYSNGGTKNGTSYPGPGCVVPNR
Ga0207704_116719721	3300025938	Miscanthus Rhizosphere	DDKCVWHNLYRMAEGGFMVQPEYSNGGGPAPGGGSYPGPGCVVPNQQP
Ga0207691_109824252	3300025940	Miscanthus Rhizosphere	GEFNKNAWYDKVGYEADDKCAWHNLYQLNRTAGLNFWVQPEYSNGGVVGSSTYPGPGCVK
Ga0207640_121905201	3300025981	Corn Rhizosphere	KCAWHNLYQTSSGHFWVQPEYSNGLAGTPGPGCVVP
Ga0207703_103086732	3300026035	Switchgrass Rhizosphere	VTDPQLNAWYDSQGYEADDKCAWHNLYHMAEGGFVVQPEFSNGGGAYPGPGCIVPNPPPL
Ga0207703_110936321	3300026035	Switchgrass Rhizosphere	ADDKCAWHNLYQINNGSFWVQPEYSNGGTVTRSGFAATYPAGCIVPNR
Ga0207678_118356311	3300026067	Corn Rhizosphere	GYEADDKCAWHNLYRTTGTGYWVQPEYSNGSADGKYPGPGCVVPNQ
Ga0207674_112396511	3300026116	Corn Rhizosphere	DKCAWHNLYQMTNGGFTVQPEYSNGGTVNGVPYPGPGCVVPNQQP
Ga0209803_13148961	3300026332	Soil	DDKCAWHNLYQMTRGNYWVQPEYSNGGNSTYPGPGCVVPQ
Ga0256802_10167712	3300026492	Sediment	NLYRTNNGGFWVQPEYSNGGSVKASGFTATYPGPGCVVP
Ga0209807_12368081	3300026530	Soil	EIREAVTDPGDNGVNAWYDAAGYEADDKCAWHNLYQMTKGGFWVQPEYSNGLTRNGSTFPQHGCVVPNR
Ga0209474_104746072	3300026550	Soil	DDKCAWHNLYQMTRGGFWVQPEYSNGGGGYPGPGCFVPNR
Ga0209177_100890592	3300027775	Agricultural Soil	KCAWHHLYQMADGGFWVQPEYSNGDGNIYPGAGCVVP
Ga0209811_101295621	3300027821	Surface Soil	DPDLNAWYDSAGYEADDKCAWHNLYQTAGSGAWVQPEFSNGNGANPYPGPGCVVPNQ
Ga0209488_103589063	3300027903	Vadose Zone Soil	AWYDAAGYEADDKCVWHNLYQMTTGGFWVQPEYSNGGTVTRSGFTATYPGPGCVVPNR
Ga0307284_103932221	3300028799	Soil	WHNLYQMTRGGFWVQPEYSNGGGKYPGPGCFVPNR
Ga0307497_102739942	3300031226	Soil	GYEADDKCAWHNLYRMANGGFVVQPEFSNSGAAPYPGSGCVVANPPPLP
Ga0307497_104855172	3300031226	Soil	PDLNAWFDSSGYEADDKCAWHNLYQTGSGFWVQPEFSNGNGAKPYPGPGCVVPNQ
Ga0306917_114929251	3300031719	Soil	CAWQNLYRTTSGGYWVQPEFSNGGTKNGTSYPGPGCVVPR
Ga0307469_109103181	3300031720	Hardwood Forest Soil	YEADDKCAWHNLYRMAEGGFAVQPEYSNGGGTAPGGGSYPGAGCVVPIPQP
Ga0307473_108702202	3300031820	Hardwood Forest Soil	DPGESNKSTWYDQSGYEADDKCAWHNLYQLNRTTGLNFWVQPEYSNGGNGYPGPGCVKP
Ga0315280_100224082	3300031862	Sediment	MLTIVSSHEIREAVTDPGDNNANGWYDAAGYEGDDKCVWHNLYQMTRGGFWVQPEFSNGGTVTASGFTTTYPSASPGVGGCVVPNR
Ga0308175_1029144332	3300031938	Soil	DEADDKCVWHNLYKMANGGFWVQPEYSNGGQVTASGFTTTYPGPGCIVP
Ga0307479_107135211	3300031962	Hardwood Forest Soil	ESNKNAWYDQSGYEADDKCAWHNLYQLNRTAGLNFWVQPEYSNGGSGYPGPGCVRP
Ga0315281_115371762	3300032163	Sediment	GYEADDKCAWHNLYQMTTGGFWVQPEFSNGGTVTRSGFTATYPGPGCIVPNR
Ga0307472_1024639542	3300032205	Hardwood Forest Soil	AVGYEADDKCAWHNLYQMTKGGFWVQPEYSNGLTRNGSTFPQHGCVVPNR
Ga0316624_122029751	3300033486	Soil	AWYDSAGYEADDKCAWHFLYQMTNSMFWVQPEYSNGGNTSASGFNATYPGPGCVVPNK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences