Metagenome / Metatranscriptome Family F068954

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068954
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	76 residues
Representative Sequence	KVLLPKVGEVAIVAEERHEIGEESEASLNQVRIEVSPEQLPDDEHELDMLCGRLVEAAETWASSCIAERHAEVSEL
Number of Associated Samples	111
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.82 %
% of genes near scaffold ends (potentially truncated)	97.58 %
% of genes from short scaffolds (< 2000 bps)	94.35 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.903 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.581 % of family members)
Environment Ontology (ENVO)	Unclassified (31.452 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.452 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.69% β-sheet: 25.00% Coil/Unstructured: 42.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00202	Aminotran_3	40.32
PF13847	Methyltransf_31	3.23
PF01243	Putative_PNPOx	3.23
PF01061	ABC2_membrane	1.61
PF07992	Pyr_redox_2	1.61
PF01494	FAD_binding_3	1.61
PF00892	EamA	1.61
PF00795	CN_hydrolase	0.81
PF07715	Plug	0.81
PF03476	MOSC_N	0.81
PF03704	BTAD	0.81
PF00679	EFG_C	0.81
PF02412	TSP_3	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	3.23
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	1.61
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	1.61
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	1.61
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	0.81
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.81
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.90 %
Unclassified	root	N/A	12.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.90 %
Unclassified	root	N/A	12.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.90 %
Unclassified	root	N/A	12.10 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	80.65 %
Unclassified	root	N/A	12.10 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.23 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	75.00 %
Unclassified	root	N/A	12.10 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.61 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.61 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.45 %
Unclassified	root	N/A	12.10 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.61 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	30.65 %
Unclassified	root	N/A	12.10 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.61 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.65 %
Unclassified	root	N/A	12.10 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.61 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.65 %
Unclassified	root	N/A	12.10 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
Rhizocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola	0.81 %
Coleofasciculaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae	0.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.65 %
Unclassified	root	N/A	12.10 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
Geitlerinema	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Geitlerinema	0.81 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.65 %
Unclassified	root	N/A	12.10 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
unclassified Geitlerinema	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Geitlerinema → unclassified Geitlerinema	0.81 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	30.65 %
Unclassified	root	N/A	12.10 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.61 %
Geitlerinema sp. PCC 7407	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Geitlerinema → unclassified Geitlerinema → Geitlerinema sp. PCC 7407	0.81 %
Rhizocola hellebori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	0.81 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.81 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_104312361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300000956\|JGI10216J12902_100141853	Not Available	604	Open in IMG/M
3300000956\|JGI10216J12902_103731985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300001537\|A2065W1_10386638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1084	Open in IMG/M
3300002915\|JGI25387J43893_1026228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	797	Open in IMG/M
3300003267\|soilL1_10021550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1916	Open in IMG/M
3300004156\|Ga0062589_101540497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300004463\|Ga0063356_100886892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1257	Open in IMG/M
3300004479\|Ga0062595_101718358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300004480\|Ga0062592_101171852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300004643\|Ga0062591_102438396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300005093\|Ga0062594_100151842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1519	Open in IMG/M
3300005093\|Ga0062594_103283374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300005184\|Ga0066671_10888475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300005187\|Ga0066675_10243030	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
3300005364\|Ga0070673_101953942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300005434\|Ga0070709_10220433	All Organisms → cellular organisms → Bacteria → Proteobacteria	1352	Open in IMG/M
3300005434\|Ga0070709_10455482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300005439\|Ga0070711_100243063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1408	Open in IMG/M
3300005440\|Ga0070705_101642212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300005459\|Ga0068867_101177052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300005535\|Ga0070684_100108035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2493	Open in IMG/M
3300005535\|Ga0070684_101067370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	759	Open in IMG/M
3300005536\|Ga0070697_100659481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Coleofasciculaceae → Geitlerinema → unclassified Geitlerinema → Geitlerinema sp. PCC 7407	922	Open in IMG/M
3300005545\|Ga0070695_100278031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1229	Open in IMG/M
3300005549\|Ga0070704_100465321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1091	Open in IMG/M
3300005549\|Ga0070704_101064419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	734	Open in IMG/M
3300005553\|Ga0066695_10471064	All Organisms → cellular organisms → Bacteria → Terrabacteria group	774	Open in IMG/M
3300005554\|Ga0066661_10893981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300005558\|Ga0066698_10878852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	575	Open in IMG/M
3300005587\|Ga0066654_10553025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	634	Open in IMG/M
3300005718\|Ga0068866_10169724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1280	Open in IMG/M
3300006046\|Ga0066652_100728826	Not Available	945	Open in IMG/M
3300006046\|Ga0066652_100902256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300006046\|Ga0066652_101723732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	570	Open in IMG/M
3300006237\|Ga0097621_101116900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300006871\|Ga0075434_101417085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300006954\|Ga0079219_10793160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300006954\|Ga0079219_10802247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	740	Open in IMG/M
3300009012\|Ga0066710_103426941	Not Available	602	Open in IMG/M
3300009090\|Ga0099827_10484163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1062	Open in IMG/M
3300009094\|Ga0111539_10765567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1124	Open in IMG/M
3300009098\|Ga0105245_11376539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	755	Open in IMG/M
3300009101\|Ga0105247_10874836	Not Available	692	Open in IMG/M
3300009792\|Ga0126374_11618386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300010044\|Ga0126310_11466291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300010303\|Ga0134082_10246179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	740	Open in IMG/M
3300010322\|Ga0134084_10372733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	550	Open in IMG/M
3300010333\|Ga0134080_10325751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	695	Open in IMG/M
3300010337\|Ga0134062_10103134	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300011996\|Ga0120156_1066987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651	Open in IMG/M
3300012208\|Ga0137376_10505777	Not Available	1048	Open in IMG/M
3300012349\|Ga0137387_10774724	Not Available	694	Open in IMG/M
3300012356\|Ga0137371_10674629	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012400\|Ga0134048_1160661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	534	Open in IMG/M
3300012469\|Ga0150984_116139768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579	Open in IMG/M
3300012481\|Ga0157320_1011155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300012517\|Ga0157354_1050455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300012893\|Ga0157284_10135897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	683	Open in IMG/M
3300012896\|Ga0157303_10084548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300012899\|Ga0157299_10043182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	978	Open in IMG/M
3300012908\|Ga0157286_10034847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1205	Open in IMG/M
3300012937\|Ga0162653_100091241	All Organisms → cellular organisms → Bacteria → Terrabacteria group	506	Open in IMG/M
3300012948\|Ga0126375_10093639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1758	Open in IMG/M
3300012985\|Ga0164308_11426320	Not Available	633	Open in IMG/M
3300012988\|Ga0164306_10900689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	721	Open in IMG/M
3300013102\|Ga0157371_10054582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2838	Open in IMG/M
3300015356\|Ga0134073_10396584	Not Available	519	Open in IMG/M
3300015372\|Ga0132256_101476784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	791	Open in IMG/M
3300018082\|Ga0184639_10226790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	989	Open in IMG/M
3300018482\|Ga0066669_10685113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	903	Open in IMG/M
3300019867\|Ga0193704_1043328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	892	Open in IMG/M
3300019875\|Ga0193701_1067651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300021080\|Ga0210382_10286946	All Organisms → cellular organisms → Bacteria → Terrabacteria group	723	Open in IMG/M
3300021344\|Ga0193719_10060927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1637	Open in IMG/M
3300021445\|Ga0182009_10127422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1189	Open in IMG/M
3300024186\|Ga0247688_1012154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1215	Open in IMG/M
3300024245\|Ga0247677_1021097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	930	Open in IMG/M
3300024245\|Ga0247677_1053677	Not Available	589	Open in IMG/M
3300024279\|Ga0247692_1050445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	644	Open in IMG/M
3300024286\|Ga0247687_1007538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1414	Open in IMG/M
3300025908\|Ga0207643_11113754	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300025915\|Ga0207693_10059409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2995	Open in IMG/M
3300025915\|Ga0207693_10254046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1379	Open in IMG/M
3300025927\|Ga0207687_11031385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	706	Open in IMG/M
3300025935\|Ga0207709_11406912	Not Available	578	Open in IMG/M
3300025942\|Ga0207689_10100318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Rhizocola → Rhizocola hellebori	2378	Open in IMG/M
3300026041\|Ga0207639_10877264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	838	Open in IMG/M
3300026075\|Ga0207708_11126883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	685	Open in IMG/M
3300026118\|Ga0207675_100234158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1773	Open in IMG/M
3300026523\|Ga0209808_1064604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1618	Open in IMG/M
3300026547\|Ga0209156_10092944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1511	Open in IMG/M
3300027360\|Ga0209969_1058662	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300027775\|Ga0209177_10140822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300027787\|Ga0209074_10107488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	952	Open in IMG/M
3300027909\|Ga0209382_11206831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300028065\|Ga0247685_1010889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1090	Open in IMG/M
3300028596\|Ga0247821_11020006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300028704\|Ga0307321_1131801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300028708\|Ga0307295_10000547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8025	Open in IMG/M
3300028710\|Ga0307322_10153205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300028714\|Ga0307309_10035753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1034	Open in IMG/M
3300028722\|Ga0307319_10239134	Not Available	597	Open in IMG/M
3300028755\|Ga0307316_10405334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300028768\|Ga0307280_10182236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	736	Open in IMG/M
3300028778\|Ga0307288_10096703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1071	Open in IMG/M
3300028787\|Ga0307323_10105871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1010	Open in IMG/M
3300028793\|Ga0307299_10314922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587	Open in IMG/M
3300028799\|Ga0307284_10199744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300028799\|Ga0307284_10232276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	730	Open in IMG/M
3300028814\|Ga0307302_10200237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	974	Open in IMG/M
3300028819\|Ga0307296_10664543	Not Available	570	Open in IMG/M
3300028875\|Ga0307289_10306717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300028875\|Ga0307289_10484460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300028884\|Ga0307308_10586578	Not Available	534	Open in IMG/M
3300030336\|Ga0247826_11648716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300031092\|Ga0308204_10158639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300031901\|Ga0307406_10782442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	804	Open in IMG/M
3300032004\|Ga0307414_11570064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	613	Open in IMG/M
3300032004\|Ga0307414_12284528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300034817\|Ga0373948_0082860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	734	Open in IMG/M
3300034819\|Ga0373958_0111069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.23%
Host-Associated	Host-Associated	21.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.61%
Plants	Host-Associated → Plants	21.77%
Aquatic	Environmental → Aquatic	1.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.26%
Freshwater	Environmental → Aquatic → Freshwater	0.81%
Sediment	Environmental → Aquatic → Sediment	0.81%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.32%
Loam	Environmental → Terrestrial → Soil → Loam	10.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.84%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.81%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.23%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.61%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.61%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.61%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.81%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.81%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.81%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011996	Permafrost microbial communities from Nunavut, Canada - A39_65cm_12M	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024186	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29	Environmental	Open in IMG/M
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028065	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK26	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1043123612	3300000955	Soil	RGATPAEIDELAKSLLPKVGEVAIVAEERHEIGEDSEASLNQVRIEVSPEHLPDDEHELDILCGRLVEAAEQWANACLADRPRADVSEL*
JGI10216J12902_1001418531	3300000956	Soil	AEIDELAKSLLPKVGEVSIVAEERHEIAEETEVQVTQVRIDVAPENLPDDPHELDMLCGRLVEAADTWARGCIAERHVEVSEL*
JGI10216J12902_1037319851	3300000956	Soil	VFAGRRATPAEIDELAKTLLPKVGEVSIVAEERHEIGEASEASLNQIRIEVSPEHLPDDEHELDELCGRLVESAERWAHDCIAERHAEI*
A2065W1_103866381	3300001537	Permafrost	ELAKSLLSKVGEVAIVAERRHEIGEDSEASLNQVRIEVAQDQLPDDEHELDEMCGRLVEASEAWARSCIAERHAEVSEL*
JGI25387J43893_10262281	3300002915	Grasslands Soil	AGRGATAAEIDELAQALLPKVGEVSIVAEERHEIGEESEASVNQVRIEVAADQLPDDEHELDQLCGRLVEAAESWARDCIADRHAEISEL*
soilL1_100215502	3300003267	Sugarcane Root And Bulk Soil	PKVGEVAIVAERRHEIGEVSEASLNQVRIEVAPKQLPDDEHELDMLCGRLVEAAENWANSCIRERHTGIAEP*
Ga0062589_1015404971	3300004156	Soil	LPKVGEVAIVAEERHEIGEESEASLNQVRIEVSPEHLPDDEHELDVLCGRLVEAAEQWANACVADRPRADVSEL*
Ga0063356_1008868921	3300004463	Arabidopsis Thaliana Rhizosphere	HEISEESEASLNQVRIEISPERLPEDEHELDVMCGRLVEATESWARACFAERANQA*
Ga0062595_1017183581	3300004479	Soil	RAATPAEIDELAKALLPKIGEVAIVAEERHEIGEGSEASLNQVRIEVSPERLPDDPHELDQLCGRLVEAAEHWARNCIAERRVEVPRL*
Ga0062592_1011718522	3300004480	Soil	AEIDELARLLLPKVGEVAIVAEERHEISQGSEASLNQVRIEVSAEQLPDDEHELDVMCGRLVEATEAWARTCFADRANQP*
Ga0062591_1024383961	3300004643	Soil	PKVGEVAIVAEERHEIGEESEASLNQVRIEVSREQLPDDPGELNQLCGHLVEAAEHWARNCIAERRVEVPRL*
Ga0062594_1001518422	3300005093	Soil	GVFAGRRATPAEIDELAKALLPKVGEVAIVAEERHEIGVSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAERHAEI*
Ga0062594_1032833742	3300005093	Soil	LPKVGEVAIVAEERHEIGEESEASLNQVRIEISAEQLPEDEHELDMLCGRLVESAEQWASACIAERHADVSEI*
Ga0066671_108884752	3300005184	Soil	KVGEVSIVAEERHEIGEESEASVNQVRIEVSADQLPDDEHELDQLCGRLVEAAESWARGCIADRHAEISEL*
Ga0066675_102430301	3300005187	Soil	ELAAALLPKVGDVSIVAEERHEIGEDAEASLNQVRIEVSPDHVPDDERELDILCGRLVEAAESWARGCIADRHAEVSEP*
Ga0070671_1009584083	3300005355	Switchgrass Rhizosphere	RHEIGEDSEASLNQVRIEVAPDQLPDDEHELDMLCGRLVEAAEQWANACVADRHADVAEL
Ga0070673_1019539421	3300005364	Switchgrass Rhizosphere	AEIDELAKALLPKVGEVAIVAEERHEIGEESEASLNQVRIEISAEQLPEDEHELDMLCGRLVESAEQWASACIAERHADVSEI*
Ga0070709_102204333	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	EVSIVAEERHEIAESSEASLNLVRVEVAPEQLPDDEHELDQLCGRLVEAAERWAQGCIAERHVDTADL*
Ga0070709_104554821	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	HEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQSCIDERRVDVADL*
Ga0070711_1002430631	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	FAGRAATPAEIDDLAKSLLPKIGEVSIVAEERHEIAESSEASLNLVRVEVAPEQLPDDDHELDELCGRLVEAAEHWAQRCIAERRADVAEL*
Ga0070705_1016422121	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	EVAIVAEERHEISGDSEVSLNQVRVEISPDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV*
Ga0068867_1011770521	3300005459	Miscanthus Rhizosphere	EVAIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV*
Ga0070684_1001080351	3300005535	Corn Rhizosphere	AEIDELAKALLPKVGEVAIVAEERHEIGEDSEASLNQVRIEVSPDQLPGDGHELDMLCGRLVEAAEQWASACVADRHADVAEL*
Ga0070684_1010673701	3300005535	Corn Rhizosphere	AEIDELAKALLPKVGEVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERHVDVADL*
Ga0070697_1006594811	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ATPAEIDELAAALVPKVGEVSIVAEHRHEIGEATEASLNQVRVEIAPEHLPDDERELDMLCGRLVEAADAWARACIADRHAEVSEL*
Ga0070695_1002780312	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GVFAGRGATPAEIDELAAALLPKVGEVSIVAEHRHEIGEATEASLNQVRVEIAPEHLPDDERELDMLCGRLVEAADAWARACIADRHAEVSEL*
Ga0070704_1004653213	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	KSLLPKVGEVAIVAEERHEIGEGSEASLNQVRIEVSPEQLPEDEHELDILCGRLVEAAETWANACFADRPRADVAEL*
Ga0070704_1010644192	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	GRRATPAEIDELAKALLPKVGEVAIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV*
Ga0066695_104710641	3300005553	Soil	GEVSIVAEERHEIGEGTEAQVGQVRIEVAPDHLPDQEHELDVLCGRLVEAAESWARGCIAERHAEVSEL*
Ga0066661_108939812	3300005554	Soil	TAELDELAQAVVPKVGEASILAEERHEVGGDAEASLHQVRILVPPDHLPADDHELDQLSGRLIEIAETWARGCIAERHAEVAEP*
Ga0066698_108788522	3300005558	Soil	KVGEVSIVAEERHEIGEGTEAQVGQVRIEVAPDHLPDNEQELDVLCGRLIEAAESWARDCIAERHAEVSEL*
Ga0066654_105530253	3300005587	Soil	ALLPKVGEVAIVAEERHEIGEDSEASLSQVRIEVAPEHLPDDERELDILCGRLVEAAEHWATACIAERHADVAEL*
Ga0068866_101697242	3300005718	Miscanthus Rhizosphere	SLLPKVGEVAIVAEERHEISGDSEVSLNQVRVEISPDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV*
Ga0066652_1007288261	3300006046	Soil	KVGEVSIVAEERHEIGEGTEAQVGQVRIEVAPDHLPDQEHELDVLCGRLVEAAESWARGCIAERHAEVSEL*
Ga0066652_1009022562	3300006046	Soil	PKVGEVSIVAEHRHEIGPEAEASLNQVRIELTPDQLPDNERELDMLCGRLVEAADSWARGCIAERHAEVSEL*
Ga0066652_1017237322	3300006046	Soil	FAGRGATPAEIDDLASALVPKVGEVSIVAEERHEIGEDTEASLNQVRIEVASDHLPDDERELDVLCGRLVEAAETWARGCIADRHAEVSEL*
Ga0097621_1011169002	3300006237	Miscanthus Rhizosphere	SSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERHVDVADL*
Ga0075434_1014170851	3300006871	Populus Rhizosphere	IVAEERHEIGEGSEASLNQVRIEVAPEHLPDDAHELDMLCGRLVEAAESWARDCIADRSTQV*
Ga0079219_107931601	3300006954	Agricultural Soil	RAATPAEIDDLARVLLPKVGEVAIVAEERHEIAEGSEASLNLVRVEVSPEQLPDDEHELDMLCGRLVEAASQWANTCIADRHADVSEL*
Ga0079219_108022471	3300006954	Agricultural Soil	EVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERRVDVADL*
Ga0066710_1034269411	3300009012	Grasslands Soil	AEERHEIGGDTEAQLDQVRIEVAPDHLPDDPHELDMLCGRLVEAAESWARDCIAERHAEVSEL
Ga0099827_104841631	3300009090	Vadose Zone Soil	ELAHALLPLVGDISIVSEQRHEIGEEVEASLHQVRIGVAEDHLPSDVDALADRLVAKAEFWAQACIAERHAEVSEL*
Ga0111539_107655671	3300009094	Populus Rhizosphere	EVAIVAEERHEISEESEASLNQVRIEVSPEQLPDDEHELDVMGGRLVEATEAWARACFAERANQP*
Ga0105245_113765391	3300009098	Miscanthus Rhizosphere	RHEIGVSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAERHAEI*
Ga0105247_108748363	3300009101	Switchgrass Rhizosphere	AEIDELAKALLPKVGEVAIVAEERHEIGEDSEASLNQVRIEVAPDQLPDDEHELDMLCGRLVEAAEQWANACVADRHADVAEL*
Ga0126374_116183862	3300009792	Tropical Forest Soil	ALLPKVGEVAIVAEERHEIAEHSEVSLNLVRVEVDPEYLPTNEHDLDQLCGRLVEAAEHWAESCIAERHADVADL*
Ga0126310_114662912	3300010044	Serpentine Soil	IVAEERHEIAEGSEASLNQVRIEVSPDRLPDDQHELDELCAWLVDAAKLWAQGCINERHAEVSEL*
Ga0134082_102461792	3300010303	Grasslands Soil	VAEERHEIGEESEASVNQVRIEVAADQLPDDEHELDQLCGRLVEAAESWARDCIADRHAEISEL*
Ga0134084_103727331	3300010322	Grasslands Soil	DELAQALLPKVGEVSIVAEERHEIGEESEASVNQVRIEVAADQLPNDEHELDQLCGRLVEAAESWARDCIADRHAEISEL*
Ga0134080_103257512	3300010333	Grasslands Soil	SLVPKVGEVSIVAEERHEIGEGTEAQVGQVRIEVAPDHLPDNEQELDVLCGRLIEAAESWARDCIAERHAEVSEL*
Ga0134062_101031341	3300010337	Grasslands Soil	LVPKVGEVSIVAEERHEIGGETEAQVDQVRIEVAPDHLPDDPHELDMLCGRLVEAAEMWAQSCIAERHAEVSEL*
Ga0120156_10669872	3300011996	Permafrost	GGATSAEIDELAKSLLSKVGEVAIVAERRHEIGEDSEASLNQVRIEVAQDQLPDDEHELDEMCGRLVEASEAWARSCIAERHAEVSEL*
Ga0137376_105057773	3300012208	Vadose Zone Soil	SIVAEERHEIGEEAEASLNQVRIEVAPDHLPADERELDILCGRLVEAAETWARACIAERHAEVSEL*
Ga0137387_107747243	3300012349	Vadose Zone Soil	AAALLPKVGDVSIVAEERHEIGEDAEASLNQVRIEVSPDHVPDDERELDILCGRLVEAAESWARGCIAERHAEVSEP*
Ga0137371_106746291	3300012356	Vadose Zone Soil	AALLPKVGDVSIVAEERHEIGEDAEASLNQVRIEVSPDHVPDDERELDILCGRLVEAAESWARGCIADRHAEVSEP*
Ga0134048_11606612	3300012400	Grasslands Soil	VAEERHEIGGETEAQVDQVRIEVAPDHLPDDPHELDMLCGRLVEAAEMWAQSCIAERHAEVSEL*
Ga0150984_1161397681	3300012469	Avena Fatua Rhizosphere	TPAEIDDLARALLPKVGEVAIVAEERHEIGEDSEASLSQVRIEVAPEHLPDDGHELDILCGRLVEAAEHWASACIADRHADVAEL*
Ga0157320_10111552	3300012481	Arabidopsis Rhizosphere	ERHEISEESEASLNQVRIEISPDQLPQDEHELDVMCGRLVEATEAWARTCFADRANKA*
Ga0157354_10504551	3300012517	Unplanted Soil	IDELARLLLPKVGEVAIVAEERHEISEESEASLNQVRIEISPDQLPQDEHELDVMCGRLVEATEAWARTCFADRANKA*
Ga0157284_101358971	3300012893	Soil	ELAKALLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAQRHAEI*
Ga0157303_100845482	3300012896	Soil	FAGRRATPAEIDELAKALLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAQRHAEI*
Ga0157299_100431822	3300012899	Soil	PAEIDELAKALLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAQRHAEI*
Ga0157289_101352001	3300012903	Soil	GGSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAQRHAEI*
Ga0157286_100348471	3300012908	Soil	LLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAQRHAEI*
Ga0162653_1000912412	3300012937	Soil	PKVGEVAIVAERRHEIGEDSEASLNQVRIEVAPDQLPDDERELDMLCGRLVEAAEHWANSCIAERHADVSEP*
Ga0126375_100936391	3300012948	Tropical Forest Soil	VGEVAIVAEERHEIGEGSEASLNQVRIEVSPEHLPKGEHELDELCGRLVEAAERWANDCIADRHVDVPSL*
Ga0164308_114263203	3300012985	Soil	AIVAEQRYEIGEEAEASLNQVRIEVSPEHLPDDEHELDMLCGRLVEAAEQWANACFADRPRADMEA*
Ga0164306_109006891	3300012988	Soil	AATRAEIDELAKALLPKVGEVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDVLCGRLVEAAEHWAQGCIAERRVDVADL*
Ga0157371_100545824	3300013102	Corn Rhizosphere	IDDLAAALLPKVGEVSIVAEERHEIGAEVEASLNQVRIEIAPDQLPDDERELDMLCGRLVEAADTWARGCIADRHAEVSEL*
Ga0134073_103965841	3300015356	Grasslands Soil	IVAEERHEIGEDAEASLNQVRIEVAPEHLPDDERELDMLCGRLVEAADTWARACIAERHADVSEL*
Ga0132256_1014767841	3300015372	Arabidopsis Rhizosphere	KVLLPKTGEVSIVAEERHEIAPGSEASLNQVRVEVSPEHLPEDEHELDQLCGRLVEAAERWAQGCIAERHAEVSEL*
Ga0184639_102267902	3300018082	Groundwater Sediment	EVAIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV
Ga0066669_106851132	3300018482	Grasslands Soil	VNFGIFAGRAATAAEIDDLAAALLPKVGEVSIVAERRHEIGPDAEASLNQVRIEVSPDQLPDDEHELDILCGRLVEAAESWAQGCIAGRH
Ga0193704_10433281	3300019867	Soil	AIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV
Ga0193701_10676512	3300019875	Soil	EIDELAKSLLPKVGEVAIVAEERHEIGEESEASVNQVRIEVAPEHLPDDAHELDQMCGRLVEASEAWARQCIAERRVEVSEP
Ga0210382_102869461	3300021080	Groundwater Sediment	VAEVSIVAEERHEIGPATEASLNQVRIEVSPDQLPDDEHELDILCGRLVEAAEIWARHCIAERHAEVSEP
Ga0193719_100609271	3300021344	Soil	RHEIGEESEASLNQVRIEVSPEHLPDDEHELDILCGRLVEAAESWASSCIAERHAEISEP
Ga0182009_101274222	3300021445	Soil	VFAGRGATPAEIDDLAAALLPRVGEVSIVAEERHEIAEGTEASLNQVRIEVAPDQLPDDPRELDMLCGRLVEAAERWARACIADRHAEVSEL
Ga0247688_10121541	3300024186	Soil	PKVGEVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQSCIAERRVDVADL
Ga0247677_10210972	3300024245	Soil	EERHQIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERHVDVADL
Ga0247677_10536772	3300024245	Soil	GRAATPAEIDDLGKALLPKVGEVAIVSEERHEIAENSEASLNLVRVEVAPEQLPDDEHELDQLCGRLVEAAEHWAQGCIAARHAEI
Ga0247692_10504452	3300024279	Soil	AATRAEIDELAKALLPKVGEVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQSCIDERRVDVADL
Ga0247687_10075381	3300024286	Soil	IVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERHVDVADL
Ga0207643_111137543	3300025908	Miscanthus Rhizosphere	SEASLNLVRVEVGPEQLPADDHELDVLCGRLVEAAEHWAQGCIAERRVDVADL
Ga0207693_100594094	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GRAATPAEIDDLAKSLLPKIGEVSIVAEERHEIAESSEASLNLVRVEVAPEQLPDDERELDQLCGRLVEAAERWAQGCIAERHVDTADL
Ga0207693_102540463	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GRAATPAEIDDLAKSLLPKIGEVSIVAEERHEIAESSEASLNLVRVEVAPEQLPDDDHELDELCGRLVEAAEHWAQRCIAERRADVAEL
Ga0207687_110313853	3300025927	Miscanthus Rhizosphere	ELAKSLLPKVGEVAIVAEERHEIGEGSEASLNQVRIEVSPEQLPEDEHELDILCGRLVEAAETWANACFADRPRADVAEL
Ga0207709_114069121	3300025935	Miscanthus Rhizosphere	RHEIGEGSEASLNQVRIEVSPEQLPEDEHELDILCGRLVEAAETWANACFADRPRADVAE
Ga0207689_101003184	3300025942	Miscanthus Rhizosphere	IVAEERHEIGEGSEASLNQVRIEVSPERLPEDEHELDILCGRLVEAAETWANACFADRPRADVAEL
Ga0207639_108772641	3300026041	Corn Rhizosphere	VAEERHEIGEESEASLNQVRIEISAEQLPEDEHELDMLCGRLVESAEQWASACIAERHADVSEI
Ga0207708_111268831	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	DELAKALLPKVGEVAIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV
Ga0207675_1002341581	3300026118	Switchgrass Rhizosphere	VAEERHEIGAEVEASLNQVRIEIAPDQLPDDERELDMLCGRLVEAADTWARGCIADRHAEVSEL
Ga0209808_10646043	3300026523	Soil	FGVFAGRGATAAEIDELAQALLPKVGEVSIVAEERHEIGEESEASVNQVRIEVAADQLPDDEHELDQLCGRLVEAAESWARDCIADRHAEISEL
Ga0209156_100929441	3300026547	Soil	TPAEIDELAAALLPKVGDVSIVAEERHEIGEDAEASLNQVRIEVSPDHLPDDERELDILCGRLVEAAESWARGCIAERHAEVSEP
Ga0209969_10586622	3300027360	Arabidopsis Thaliana Rhizosphere	FAGRRATPAEIDELAKALLPKVGEVAIVAEERHEIGGSSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAQRHAEI
Ga0209177_101408222	3300027775	Agricultural Soil	GEVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERRVDVADL
Ga0209074_101074883	3300027787	Agricultural Soil	PAEIDELAKALLPKVGEVAIVAEERHEIGEDSEASLNQVRIEVSPDQLPDDDHELDMLCGRLVEAAEQWANACVADRHADVAEL
Ga0209382_112068311	3300027909	Populus Rhizosphere	EERHEIGASSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAERHAEI
Ga0247685_10108891	3300028065	Soil	AGRAATRAEIDELAKALLPKVGEVSIVAEERHEIAESSEASLNLVRVEVGPEQLPADDHELDELCGRLVEAAEHWAQGCIAERHVDVADL
Ga0247821_110200062	3300028596	Soil	AEIDELAKALLPKVGEVAIVAEERHEIGESSEASLNQVRIEVSPEHLPDDEHDLDELCGRLVEAAERWAHDCIAERHAEI
Ga0307321_11318012	3300028704	Soil	FAGRGATPAEIDELAKSLLPKVGEVAIVAEERHEIGEDAEASLNQVRIEVSPEHLPDDEHELDILCGRLVEAAEQWANACFADRPRADVSEI
Ga0307295_100005479	3300028708	Soil	AALLPKVGEVSIVAEERHEIGAGVEASLNQVRIELGADQLPDDERELDMLCGRLVEAADSWARGCIADRHAEVSEL
Ga0307322_101532051	3300028710	Soil	GEVSIVAEERHEIGAGVEASLNQVRIELGADQLPDDERELDMLCGRLVEAADSWARGCIADRHAEVSEL
Ga0307309_100357533	3300028714	Soil	LAKALLPKVGEVAIVAEERHEIGEESEASLNQVRIEVSPEHLPDDEHELDELCGRLVEAAEQWANTCIAERHVDVSEL
Ga0307319_102391341	3300028722	Soil	HEIGEESEASLNQVRIEVSPEHLPDDEHELDILCGRLVEAAESWASSCIAERHAEISEP
Ga0307316_104053341	3300028755	Soil	AGRGATSAEIDELAKSLLPKVGEVAIVAEERHEIGEESEASVNQVRIEVAPDQLPDGEHELDVMCGRLVEASEAWARACIAERHAEVSEP
Ga0307280_101822362	3300028768	Soil	LLPKVGEVSIVAEERHEIGAGVEASLNQVRIELGADQLPDDERELDMLCGRLVEAADSWARGCIADRHAEVSEL
Ga0307288_100967033	3300028778	Soil	VFAGRGATPAEIDELAKALLPKVGEVAIVAEERHEIGEESEASLNQVRIEVSPEHLPDDEHELDELCGRLVEAAEQWANTCIAERHVDVSEL
Ga0307323_101058712	3300028787	Soil	PKVGEVAIVAERRHEIGEDSEASLNQVRIEVAPEHLPDDERELDMLCGRLVEAAENWANSCIAERHAEVSEP
Ga0307299_103149223	3300028793	Soil	GEVAIVAEERHEIGEDAEASLNQVRIEVSPEHLPDDEHELDILCGRLVEAAEQWANACFADRPRADVSEI
Ga0307284_101997441	3300028799	Soil	AAEIDELAQALLPKVGEVSIVAEERHEIGEESEASVNQVRIEIAADQLPDDEHELDILCGRLVEAAESWARGCIAERHAEVSEI
Ga0307284_102322761	3300028799	Soil	AGRAATPAEIDELAKALLPKVGEVAIVAERRHEIGEDSEASLNQVRIEVAPEHLPDDERELDMLCGRLVEAAENWANSCIAERHAEVSEP
Ga0307302_102002371	3300028814	Soil	EIDELAKVLLPKVGEVAIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV
Ga0307296_106645431	3300028819	Soil	AIVAEERHEIGEESEASLNQVRIEVSPEHLPDDEHELDELCGRLVEAAEQWANACIAERHVDVSEL
Ga0307289_103067172	3300028875	Soil	GVFAGRRATPAEIDELAKALLPKVGEVAIVAEERHEISGDSEVSLNQVRVEISSDQLPDDEHELDVMCGRLVEASEAWARSCFAERATEV
Ga0307289_104844602	3300028875	Soil	FGVFAGRGATSAEIDELAKSLLPKVGEVAIVAEERHEIGEESEASVRQVRIEVAPEHLPDDAHELDQMCGRLVEASEAWARQCIAERRVEVSEP
Ga0307308_105865781	3300028884	Soil	EERHEIGEDAEASLNQVRIEVMPEHLPEDEHELDILCGRLVEAAETWARACIADRHADVSEL
Ga0247826_116487161	3300030336	Soil	RHEIGEESEASLNQVRIEVAPDQLPDDEHELDVMCGRLVEASEAWARQCIAERHAEVSEP
Ga0308204_101586392	3300031092	Soil	LLPKVGEVAIVAEERHEIGEESEASVNQVRIEVAPEHLPDDAHELDQMCGRLVEASEAWARQCIAERRIEVSEP
Ga0307406_107824422	3300031901	Rhizosphere	PAEIDELAKWLLPKVGEVAIVAEERHEIAEGSEASLNQVRIEVSPNQLPDDQRELDELCGWLVEAAKRWAHGCIAERHAEVSEL
Ga0307414_115700641	3300032004	Rhizosphere	VFAGRAATPAEIDELAKWLLPKVGEVAIVAEERHEIAEGSEASLNQVRIEVSPDRLPDDQHELDELCAWLVDAAKLWAQGCINERHAEVSEL
Ga0307414_122845282	3300032004	Rhizosphere	KVLLPKVGEVAIVAEERHEIGEESEASLNQVRIEVSPEQLPDDEHELDMLCGRLVEAAETWASSCIAERHAEVSEL
Ga0373948_0082860_2_205	3300034817	Rhizosphere Soil	VSIVAEERHEIAESSEASLNLVRVEVAPEQLPDDERELDQLCGRLVEAAERWAQGCIAERHVDTADL
Ga0373958_0111069_434_652	3300034819	Rhizosphere Soil	PKIGEVSIVAEERHEIAESSEASLNLVRVEVAPEQLPDDERELDQLCGRLVEAAERWAQGCIAERHVDTADL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068954

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences