NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F068886

Metagenome / Metatranscriptome Family F068886

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F068886
Family Type Metagenome / Metatranscriptome
Number of Sequences 124
Average Sequence Length 56 residues
Representative Sequence VFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA
Number of Associated Samples 110
Number of Associated Scaffolds 124

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 77.24 %
% of genes near scaffold ends (potentially truncated) 32.26 %
% of genes from short scaffolds (< 2000 bps) 87.10 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (62.903 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(16.936 % of family members)
Environment Ontology (ENVO) Unclassified
(45.161 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.258 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.10%    β-sheet: 0.00%    Coil/Unstructured: 43.90%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 124 Family Scaffolds
PF00528BPD_transp_1 50.00
PF00005ABC_tran 35.48
PF08402TOBE_2 8.06
PF13416SBP_bac_8 1.61
PF13481AAA_25 0.81
PF00730HhH-GPD 0.81

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 124 Family Scaffolds
COG01223-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.81
COG0177Endonuclease IIIReplication, recombination and repair [L] 0.81
COG1059Thermostable 8-oxoguanine DNA glycosylaseReplication, recombination and repair [L] 0.81
COG1194Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairsReplication, recombination and repair [L] 0.81
COG22313-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamilyReplication, recombination and repair [L] 0.81

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.90 %
UnclassifiedrootN/A37.10 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000891|JGI10214J12806_11998893All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300000956|JGI10216J12902_107796243All Organisms → cellular organisms → Bacteria → Proteobacteria3257Open in IMG/M
3300004047|Ga0055499_10013111All Organisms → cellular organisms → Bacteria → Proteobacteria1003Open in IMG/M
3300004114|Ga0062593_100423402Not Available1201Open in IMG/M
3300004463|Ga0063356_101974984All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300004463|Ga0063356_105625944All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria538Open in IMG/M
3300004463|Ga0063356_105934763Not Available524Open in IMG/M
3300004479|Ga0062595_100283794All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300005328|Ga0070676_10060423All Organisms → cellular organisms → Bacteria2251Open in IMG/M
3300005337|Ga0070682_101239727All Organisms → cellular organisms → Bacteria → Proteobacteria631Open in IMG/M
3300005354|Ga0070675_100534696All Organisms → cellular organisms → Bacteria1059Open in IMG/M
3300005355|Ga0070671_100582766All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300005356|Ga0070674_101113522Not Available698Open in IMG/M
3300005364|Ga0070673_100580589Not Available1021Open in IMG/M
3300005364|Ga0070673_101187041All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae715Open in IMG/M
3300005367|Ga0070667_102340611All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300005441|Ga0070700_100372147All Organisms → cellular organisms → Bacteria → Proteobacteria1066Open in IMG/M
3300005456|Ga0070678_101631991All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales606Open in IMG/M
3300005466|Ga0070685_10056412All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2283Open in IMG/M
3300005466|Ga0070685_10460510All Organisms → cellular organisms → Bacteria → Proteobacteria893Open in IMG/M
3300005471|Ga0070698_101021225Not Available774Open in IMG/M
3300005543|Ga0070672_100460021Not Available1097Open in IMG/M
3300005549|Ga0070704_101991936Not Available539Open in IMG/M
3300005563|Ga0068855_102363344Not Available531Open in IMG/M
3300005618|Ga0068864_102164286All Organisms → cellular organisms → Bacteria → Proteobacteria563Open in IMG/M
3300005719|Ga0068861_100775577All Organisms → cellular organisms → Bacteria898Open in IMG/M
3300005719|Ga0068861_102190556All Organisms → cellular organisms → Bacteria → Proteobacteria554Open in IMG/M
3300005836|Ga0074470_10109877All Organisms → cellular organisms → Bacteria3602Open in IMG/M
3300005836|Ga0074470_11613943All Organisms → cellular organisms → Bacteria1534Open in IMG/M
3300005841|Ga0068863_101969866All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300005844|Ga0068862_102375035All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300006358|Ga0068871_100736804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae905Open in IMG/M
3300006844|Ga0075428_101224113Not Available791Open in IMG/M
3300006881|Ga0068865_100271906All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300006881|Ga0068865_100853885All Organisms → cellular organisms → Bacteria789Open in IMG/M
3300009100|Ga0075418_10101969All Organisms → cellular organisms → Bacteria3047Open in IMG/M
3300009148|Ga0105243_10986959Not Available844Open in IMG/M
3300009157|Ga0105092_10801946All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300009177|Ga0105248_12991257Not Available538Open in IMG/M
3300009553|Ga0105249_11774564All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300009597|Ga0105259_1098998Not Available689Open in IMG/M
3300009609|Ga0105347_1004387All Organisms → cellular organisms → Bacteria → Proteobacteria5204Open in IMG/M
3300009610|Ga0105340_1177553All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300009678|Ga0105252_10081051All Organisms → cellular organisms → Bacteria1277Open in IMG/M
3300009678|Ga0105252_10108747Not Available1120Open in IMG/M
3300010403|Ga0134123_10531969Not Available1114Open in IMG/M
3300011107|Ga0151490_1426754All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300011119|Ga0105246_11203821Not Available697Open in IMG/M
3300011417|Ga0137326_1047563All Organisms → cellular organisms → Bacteria → Proteobacteria931Open in IMG/M
3300011420|Ga0137314_1042260All Organisms → cellular organisms → Bacteria1105Open in IMG/M
3300011434|Ga0137464_1030218Not Available1474Open in IMG/M
3300011445|Ga0137427_10041445All Organisms → cellular organisms → Bacteria1815Open in IMG/M
3300012039|Ga0137421_1087251All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300012046|Ga0136634_10089741All Organisms → cellular organisms → Bacteria → Proteobacteria1150Open in IMG/M
3300012212|Ga0150985_100713829All Organisms → cellular organisms → Bacteria1252Open in IMG/M
3300012212|Ga0150985_109977932All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300012212|Ga0150985_118498427Not Available540Open in IMG/M
3300012212|Ga0150985_120322735All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300012354|Ga0137366_10131868All Organisms → cellular organisms → Bacteria1884Open in IMG/M
3300012469|Ga0150984_100745042Not Available1632Open in IMG/M
3300012469|Ga0150984_115763950Not Available596Open in IMG/M
3300012892|Ga0157294_10143506Not Available657Open in IMG/M
3300012901|Ga0157288_10165361Not Available675Open in IMG/M
3300012916|Ga0157310_10345952All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300012958|Ga0164299_10201797All Organisms → cellular organisms → Bacteria1150Open in IMG/M
3300012961|Ga0164302_10723974Not Available740Open in IMG/M
3300012988|Ga0164306_10078114All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2097Open in IMG/M
3300014745|Ga0157377_10109636All Organisms → cellular organisms → Bacteria1657Open in IMG/M
3300015077|Ga0173483_10991139All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300015200|Ga0173480_10275604All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae928Open in IMG/M
3300015371|Ga0132258_10608810All Organisms → cellular organisms → Bacteria → Proteobacteria2743Open in IMG/M
3300015372|Ga0132256_101642547All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300015373|Ga0132257_101586464Not Available837Open in IMG/M
3300015374|Ga0132255_104256972All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300018055|Ga0184616_10253897All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300018067|Ga0184611_1118940Not Available926Open in IMG/M
3300018073|Ga0184624_10166780Not Available974Open in IMG/M
3300018081|Ga0184625_10041000All Organisms → cellular organisms → Bacteria2298Open in IMG/M
3300018083|Ga0184628_10000838All Organisms → cellular organisms → Bacteria15724Open in IMG/M
3300018432|Ga0190275_10296404All Organisms → cellular organisms → Bacteria1583Open in IMG/M
3300018469|Ga0190270_10043591All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3055Open in IMG/M
3300018476|Ga0190274_11529290All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300018481|Ga0190271_10010668All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria6496Open in IMG/M
3300018481|Ga0190271_10039897All Organisms → cellular organisms → Bacteria → Proteobacteria3892Open in IMG/M
3300019361|Ga0173482_10098075All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300019362|Ga0173479_10159064Not Available912Open in IMG/M
3300020016|Ga0193696_1144169Not Available591Open in IMG/M
3300022756|Ga0222622_10186317All Organisms → cellular organisms → Bacteria1367Open in IMG/M
3300025905|Ga0207685_10822110Not Available513Open in IMG/M
3300025907|Ga0207645_10271833All Organisms → cellular organisms → Bacteria1124Open in IMG/M
3300025917|Ga0207660_11490227Not Available547Open in IMG/M
3300025923|Ga0207681_11171001Not Available646Open in IMG/M
3300025926|Ga0207659_10256637All Organisms → cellular organisms → Bacteria1420Open in IMG/M
3300025930|Ga0207701_10214954Not Available1686Open in IMG/M
3300025930|Ga0207701_10673630All Organisms → cellular organisms → Bacteria → Proteobacteria877Open in IMG/M
3300025931|Ga0207644_10123368All Organisms → cellular organisms → Bacteria1975Open in IMG/M
3300025936|Ga0207670_10102739All Organisms → cellular organisms → Bacteria → Proteobacteria2044Open in IMG/M
3300025937|Ga0207669_11596345All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300025938|Ga0207704_10130792Not Available1738Open in IMG/M
3300025942|Ga0207689_10517911Not Available1000Open in IMG/M
3300025944|Ga0207661_11909048Not Available540Open in IMG/M
3300025945|Ga0207679_11565874Not Available604Open in IMG/M
3300025960|Ga0207651_11994780Not Available521Open in IMG/M
3300025961|Ga0207712_11658323Not Available573Open in IMG/M
3300025972|Ga0207668_10519913All Organisms → cellular organisms → Bacteria → Proteobacteria1027Open in IMG/M
3300026047|Ga0208658_1019088Not Available562Open in IMG/M
3300026075|Ga0207708_10439900All Organisms → cellular organisms → Bacteria → Proteobacteria1084Open in IMG/M
3300026118|Ga0207675_100419204All Organisms → cellular organisms → Bacteria1322Open in IMG/M
3300027513|Ga0208685_1037674All Organisms → cellular organisms → Bacteria → Proteobacteria1057Open in IMG/M
3300028577|Ga0265318_10007033All Organisms → cellular organisms → Bacteria5126Open in IMG/M
3300028712|Ga0307285_10240012Not Available514Open in IMG/M
3300028802|Ga0307503_10484155Not Available663Open in IMG/M
3300028819|Ga0307296_10247880All Organisms → cellular organisms → Bacteria → Proteobacteria969Open in IMG/M
3300031366|Ga0307506_10017019All Organisms → cellular organisms → Bacteria1739Open in IMG/M
3300031538|Ga0310888_10500561All Organisms → cellular organisms → Bacteria → Proteobacteria727Open in IMG/M
3300031547|Ga0310887_10766879Not Available603Open in IMG/M
3300031731|Ga0307405_11625219Not Available571Open in IMG/M
3300031943|Ga0310885_10434378All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300031944|Ga0310884_10928841All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300032012|Ga0310902_10220051Not Available1126Open in IMG/M
3300032017|Ga0310899_10632865Not Available538Open in IMG/M
3300032157|Ga0315912_10348256All Organisms → cellular organisms → Bacteria1170Open in IMG/M
3300034147|Ga0364925_0409997Not Available514Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.94%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil8.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere6.45%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere5.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.84%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment4.03%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.03%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere3.23%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.23%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.42%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.42%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.42%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.42%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.61%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.61%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.61%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere1.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.81%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.81%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.81%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.81%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.81%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.81%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.81%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.81%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.81%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.81%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.81%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.81%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.81%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004047Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009597Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299EnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300009678Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011107Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011417Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2EnvironmentalOpen in IMG/M
3300011420Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2EnvironmentalOpen in IMG/M
3300011434Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2EnvironmentalOpen in IMG/M
3300011445Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2EnvironmentalOpen in IMG/M
3300012039Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2EnvironmentalOpen in IMG/M
3300012046Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012892Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012916Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300018055Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coexEnvironmentalOpen in IMG/M
3300018067Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coexEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300020016Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026047Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D1_rd (SPAdes)EnvironmentalOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027513Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)EnvironmentalOpen in IMG/M
3300028577Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaGHost-AssociatedOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300031366Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_SEnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300034147Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10214J12806_1199889313300000891SoilGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHIYTSRRRGKGEAA*
JGI10216J12902_10779624343300000956SoilLGRSSSSGRIVALDRAALLGLALGLALYVLPFWREGRLRPAFWITLVSTLLHVYTSHKRAGRDGQDGQDGRDGREGQETA*
Ga0055499_1001311123300004047Natural And Restored WetlandsLGRSSSSRWRWIVLCDRAALGGLALGLALYVMPLWREGRLRVAFWITLLSTLAHVYTSRQRGQRGQDEA*
Ga0062593_10042340223300004114SoilLLDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDRAA*
Ga0063356_10197498423300004463Arabidopsis Thaliana RhizosphereLGRSSNRRWIVLWDRVALGGLALGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGKDQA*
Ga0063356_10562594423300004463Arabidopsis Thaliana RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSVLLHVYTSRRRGKGQAA*
Ga0063356_10593476313300004463Arabidopsis Thaliana RhizosphereLGRSSSRRWIVLADRVALGGLALGLLLYVMPFWREGRLRPALWITLLSTLLHVYTSRQRGKGEAA*
Ga0062595_10028379413300004479SoilALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDRAA*
Ga0070676_1006042323300005328Miscanthus RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLVSVLLHVYTSRRRGKGQAA*
Ga0070682_10123972723300005337Corn RhizosphereMFDRAALGGLALGLALYVMPFWREGRLRPAFWITLVSALLHVYTSRQRGKGQAA*
Ga0070675_10053469613300005354Miscanthus RhizosphereGGLALGLALYVLPFWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA*
Ga0070671_10058276633300005355Switchgrass RhizosphereKRWIVALDRVALGGLALGLALYVMPFWREGRLRPAFWITLVSALLHVYTSRQSGKGEAA*
Ga0070674_10111352223300005356Miscanthus RhizosphereLLDRAALGGLALGLALFVMPFWREGRLRPAFWLTLLSTLLHVYTSRQRGKD
Ga0070673_10058058913300005364Switchgrass RhizosphereLGRSSSKRWIVALDRVALGGLALGLALYVMPFWREGRLRPAFWITLVSALLHVYTSRQ
Ga0070673_10118704123300005364Switchgrass RhizosphereLGRSSSRRWIVLWDRVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGQRGKDEA*
Ga0070667_10234061123300005367Switchgrass RhizosphereLALYVLPFWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA*
Ga0070700_10037214723300005441Corn, Switchgrass And Miscanthus RhizosphereLGRSSNRRWIVLWDRVALGGLAVGLALYVMPLWREGRLRPAFWITLLSALLHVYTSRQRGQRGKDEA*
Ga0070678_10163199123300005456Miscanthus RhizosphereLGRSSSSRWIVLCDRAALGGLALGLALYVMPFWREGRLRPAFWITLLSALVHVYTSRQRGKGAA*
Ga0070685_1005641233300005466Switchgrass RhizosphereLGRSSSRRWIVLWDRVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGKDEA*
Ga0070685_1046051023300005466Switchgrass RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA*
Ga0070698_10102122513300005471Corn, Switchgrass And Miscanthus RhizosphereLGRSSSSSWIVYLDRAALSALGVGLALYVLPFWREGRLRPAFWLTLVATLLH
Ga0070672_10046002123300005543Miscanthus RhizosphereVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGKDEA*
Ga0070704_10199193613300005549Corn, Switchgrass And Miscanthus RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSVLLHVYTSRRRG
Ga0068855_10236334413300005563Corn RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPALWVTLLSALLHIYTSRQRGKDRAA*
Ga0068864_10216428623300005618Switchgrass RhizosphereLGRSSSRRWIVLLDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDRAA*
Ga0068861_10077557723300005719Switchgrass RhizosphereLGRSSNRRWIVLWDRVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGKDEA*
Ga0068861_10219055623300005719Switchgrass RhizosphereLGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHIYTSRRRGKGEAA*
Ga0074470_1010987743300005836Sediment (Intertidal)LGRSSSSRWRWIVLCDRAALGGLALGLALYVMPLWREGRLRVAFWITLLSTLAHVYTSRRRGKGAA*
Ga0074470_1161394333300005836Sediment (Intertidal)LARSSSSRWLVLLDRAAIGSLALGLALYVMPYWRDGRLAAAFWITLAATLLHVYTSHARSSQGGP*
Ga0068863_10196986623300005841Switchgrass RhizosphereWIVALDRVALGGLALGLALYVMPFWREGRLRPAFWITLVSALLHVYTSRQSGKGEAA*
Ga0068862_10237503523300005844Switchgrass RhizosphereLALYVVPFWREGRLRPAFWITLLSALLHIYTSRRRGKGEAA*
Ga0068871_10073680423300006358Miscanthus RhizosphereLGRSSSKRWIVALDRVALGGLALGLALYVMPFWREGRLRPAFWITLVSALLHVYTSRQSGKGEAA*
Ga0075428_10122411323300006844Populus RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSR
Ga0068865_10027190633300006881Miscanthus RhizosphereLGRSSNRRWIVLWDRLALGGLALGLALYVMPLWREGRLRPAFWLTLVAALLHVYTSRQRGQRGKDEA*
Ga0068865_10085388513300006881Miscanthus RhizosphereLYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA*
Ga0075418_1010196943300009100Populus RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGQAA*
Ga0105243_1098695923300009148Miscanthus RhizosphereLGRSSSRGWIVAFDRSALGGLAVGIALYVAPFWREGRLRAALWITLLATVLHAFTSRERGGRQEPE
Ga0105092_1080194623300009157Freshwater SedimentLGRSSSSRWIVVFDRVALGGLALGLALYVLPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA*
Ga0105248_1299125713300009177Switchgrass RhizosphereLLDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDR
Ga0105249_1177456423300009553Switchgrass RhizosphereVFDRVALGGLALGLALYVMPFWREERLRPAFWITLLSALLHIYTSRRRGKGEAA*
Ga0105259_109899823300009597SoilVFDRVALGGLALGLALYVLPFWREGRLRPAFWITLLSTLLHVYTSRQRGKGEAA*
Ga0105347_100438733300009609SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHIYTSRRRGKGQAA*
Ga0105340_117755323300009610SoilVALGGLALGLALYVMPFWREGRLRPAFWITLLAALLHVYTSRRRGKGQAA*
Ga0105252_1008105123300009678SoilALGLALYVMPFWREGRLRPAFWITLLAALLHVYTSRRRGKGQAA*
Ga0105252_1010874723300009678SoilVFDRVALGGLALGLALYVLPFWREGRLRPAFWITLLSALLHVYTSRQRGKGQAA*
Ga0134123_1053196923300010403Terrestrial SoilLLDRAALGGLALGLALYVMPFWREGRLRPAFWLTLLSTLLHVYTSRQRGKDGAA*
Ga0151490_142675423300011107SoilLGRSSNSQRWIVALDRCAVGGLVLGLALYVMPLWREGRLRPAFWLTLVATLLHVYTSHKRAKSEAA*
Ga0105246_1120382123300011119Miscanthus RhizosphereVALGSLAVGLALYVMPYWREQRLAAAFWITFLATVLHVYTSHARGQQGD
Ga0137326_104756323300011417SoilVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHIYTSRRRGKGQAA*
Ga0137314_104226013300011420SoilGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHIYTSRRRGKGQAA*
Ga0137464_103021833300011434SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRQRGKGQAA*
Ga0137427_1004144523300011445SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLATLLHVYTSRRRGKGQAA*
Ga0137421_108725123300012039SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLAALLHVYTSRRRGKGQAA*
Ga0136634_1008974123300012046Polar Desert SandVLADRVVLIGLGLGLALYVMPFWAEGRLRWAFWVTLVSALLHVYTSHRRLRGAR*
Ga0150985_10071382923300012212Avena Fatua RhizosphereLGRSSSKRWIVLLDRGALGGLALGLALYVLPFWREGRLRPAFWITLVSALLHVYTSRQGGKGEAA*
Ga0150985_10997793223300012212Avena Fatua RhizosphereLGRSSNSQRWIVALDRCAVGGLVLGLALYVMPLWREGRLRPAFWITFVATLLHVYTSHKRAKSEAA*
Ga0150985_11849842733300012212Avena Fatua RhizosphereMGKLDRAALTGLALGLALYVMPLWRGGRLRPAFWITLVSALLHVYT
Ga0150985_12032273523300012212Avena Fatua RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITFVSALAHVYTSRQRGKGETA*
Ga0137366_1013186833300012354Vadose Zone SoilVGGLVLGLALYVMPLWREGRLRPAFWLTLVATLLHVYTSHKRAKSEAA*
Ga0150984_10074504233300012469Avena Fatua RhizosphereLGRSSSKRWIVLLDRGALGGLALGLALYVLPFWREGRLRPAFWITLVSALLHVYTSRQSGKGEAA*
Ga0150984_11576395023300012469Avena Fatua RhizosphereVGGLVLGLALYVMPLWREGRLRPAFWITLVATLLHVYTSHKRAK
Ga0157294_1014350613300012892SoilVLDRAALGGLAVGLALYVMPFWREGRLRPAFWLTLVSALLHVYTSRQS
Ga0157288_1016536113300012901SoilVALGGLALGLLLYVMPFWREGRLRVAFWITLLSTLAHVYTS
Ga0157310_1034595213300012916SoilLGRSSSSRWIVLFDRAALGGLALGLALYVMPFWREGRLRPAFWITLLSALVHVYTSRQRGKGAA*
Ga0164299_1020179723300012958SoilMALGGLALGLALYVMPFWREGRLRPACWITLVSALLHVYTSRQSGKGEAA*
Ga0164302_1072397413300012961SoilLGRSSSRRLDRAALAGLALGLALYVLPLWREGRLRFAFWLTLVSTLLHIYTSHAGRARS*
Ga0164306_1007811433300012988SoilLGRSSSKRWIVALDRVALGGLAPGLALYVMPFWREGRLRPAFWITLVSALLHVYTSRQSGKGEAA*
Ga0157374_1171648923300013296Miscanthus RhizosphereMPLWREGRLRPAFWLTLVAALLHVYTSRQSGKGEAS*
Ga0157377_1010963633300014745Miscanthus RhizosphereMFDRVALGGLALGLALYVLPFWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA*
Ga0173483_1099113923300015077SoilLGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREGRLRPALWITLLSTLLHVYTSRQRGKGEAA*
Ga0173480_1027560423300015200SoilVALGGLALGLLLYVMPFWREGRLRPALWITLLSTLLHVYTSRQRGKGEAA*
Ga0132258_1060881013300015371Arabidopsis RhizosphereSSSRRWIVLFDRVALGGLALGLLLYVMPFWRDGRLRPAFWITLLSTLLHVYTSRQRGKGEAA*
Ga0132256_10164254723300015372Arabidopsis RhizosphereVALGGLALGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGQRGKDDA*
Ga0132257_10158646413300015373Arabidopsis RhizosphereVALGGLALGLALYVMPFWREGRLRPAFWITLIAALLHVYTSRQRGKGEALAS
Ga0132255_10425697223300015374Arabidopsis RhizosphereVLFDRVALGGLALGLLLYVMPFWRDGRLRPAFWITLLSTLLHVYTSRQRGKGEAA*
Ga0184616_1025389723300018055Groundwater SedimentVFDRVALGGLAVGLALYVMPFWREGRLRPAFWITFLAALLHVYTSRRRGKGQAA
Ga0184611_111894023300018067Groundwater SedimentLGRSSSSRWIVLCDRAALGGLALGLALYVMPFWREGRLRPAFWITLLSALVHVYTSRQRGKGAA
Ga0184624_1016678023300018073Groundwater SedimentLGRSSNRRWIVLGDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRQRGKG
Ga0184625_1004100033300018081Groundwater SedimentVALGGLALGLALYVMPLWREGRLRPAFWITLLAVLLHVYTSRQRGKDEA
Ga0184628_10000838103300018083Groundwater SedimentVFDRVALGGLALGLALYVMPFWREGRLRPAFWITFLAALLHVYTSRRRGKGQAA
Ga0190275_1029640423300018432SoilMIGLALGLALYVAPFWPEGRLRPAFWITLIATLLHVYTSHKRAPGEAA
Ga0190270_1004359143300018469SoilLGRSSSSRWIVAFDRAALGGLALGLALYVMPFWREGRLRPAFWITLLATLLHVYTSRRRGKGQAA
Ga0190274_1152929023300018476SoilLGRSSSRRWIVLADRVALGGLALGLLLYVMPFWREGRLRPALWITLLSTLLHVYTSRQRGKGEAA
Ga0190271_1001066843300018481SoilLGRSSSSRWIVAFDRAALGGLALGLALYVMPFWREGRLRPAFWITFLSALLHIYTSRQRGKGQAA
Ga0190271_1003989733300018481SoilLGRSSSSRWIVLGDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALVHVYTSRQRGKGAA
Ga0173482_1009807523300019361SoilLLDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDRAA
Ga0173479_1015906423300019362SoilLGRSSSRRWIVLLDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDRAA
Ga0193696_114416913300020016SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRQRGKGQAA
Ga0222622_1018631723300022756Groundwater SedimentVFDRVALGGLALGLLLYVMPFWREGRLRPALWITLLSTLLHVYTSRQRGKGEAA
Ga0207685_1082211023300025905Corn, Switchgrass And Miscanthus RhizosphereLGLALYVMPLWREGRLRAAFWITLLSTLAHVYTSRQRGKGAA
Ga0207645_1027183323300025907Miscanthus RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLVSVLLHVYTSRRRGKGQAA
Ga0207660_1149022723300025917Corn RhizosphereLGRSSNSSWIVLLDRAALTGLALGLALYVLPFWREGRLRPALWITLVSTVLHVYTSH
Ga0207681_1117100113300025923Switchgrass RhizosphereLGRSSSSRWIVVFDRVALGGLALGLALYVVPFWREGRLRPAFWITLLSALLHVYTSRRRG
Ga0207659_1025663733300025926Miscanthus RhizosphereVFDRVALGGLALGLALYVLPFWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA
Ga0207701_1021495433300025930Corn, Switchgrass And Miscanthus RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA
Ga0207701_1067363023300025930Corn, Switchgrass And Miscanthus RhizosphereVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGKDEA
Ga0207644_1012336823300025931Switchgrass RhizosphereMFDRVALGGLALGLALYVLPFWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA
Ga0207670_1010273933300025936Switchgrass RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIYTSRQRGKDRAA
Ga0207669_1159634523300025937Miscanthus RhizosphereALGGLALGLALYVMPFWREGRLRPAFWITLLSVLLHVYTSRRRGKGQAA
Ga0207704_1013079233300025938Miscanthus RhizosphereLGRSSSRRWIVLLDRAALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA
Ga0207689_1051791123300025942Miscanthus RhizosphereLGRSSSRGWIVAFDRSALGGLAVGIALYVAPFWREGRLRAALWITLLATVLHAFTSRERG
Ga0207661_1190904823300025944Corn RhizosphereGRSSNRRWIVLWDRLALGGLALGLALYVMPLWREGRLRPAFWITFLSALMHVYTSRRRGKGQAA
Ga0207679_1156587413300025945Corn RhizosphereLGRSSSRRWIVLLDRAALGGLALGLALYVMPFWREGRLRPALWITLLSALLHIY
Ga0207651_1199478023300025960Switchgrass RhizosphereLGRSSSRRWIVLWDRVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHV
Ga0207712_1165832323300025961Switchgrass RhizosphereLGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREERLRPAFWITLLSALLHIYTSRRRGKGEAA
Ga0207668_1051991323300025972Switchgrass RhizosphereVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSVLLHVYTSRRRGKGQAA
Ga0208658_101908823300026047Natural And Restored WetlandsLGRSSSSRWRWIVLCDRAALGGLALGLALYVMPLWREGRLRVAFWITLLSTLA
Ga0207708_1043990023300026075Corn, Switchgrass And Miscanthus RhizosphereVALGGLAVGLALYVMPLWREGRLRPAFWITLLSALLHVYTSRQRGQRGKDEA
Ga0207675_10041920423300026118Switchgrass RhizosphereLGRSSNRRWIVLWDRVALGGLAVGLALYVMPLWREGRLRPAFWITFLAALLHVYTSRQRGKDEA
Ga0208685_103767423300027513SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHIYTSRRRGKGQAA
Ga0265318_1000703343300028577RhizosphereVALDRLAVGGLGLGLGLYVLPLWREGRLRWAFLVTLISTLLHIYTSHKRST
Ga0307285_1024001223300028712SoilLGRSNSSRWIVLFDRAALGGLALGLALYVMPFWREGRLRPAFWITLLSALVHVYTSRQRGKGAA
Ga0307503_1048415513300028802SoilVFDRVALGGLALGLLLYVLPFWREGRLRPAFWITLLSTLLHVYTSRQRGKGEAA
Ga0307296_1024788023300028819SoilVGGLVLGLALYVMPFWREGRLRPAFWITLVATLLHVYTSHKRAKSEAA
Ga0307506_1001701923300031366SoilVGGLVLGLALYVMPLWREGRLRPAFWLTLVATLLHVYTSHKRAKSEAA
Ga0310888_1050056123300031538SoilLGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA
Ga0310887_1076687923300031547SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRGKGQAA
Ga0307405_1162521923300031731RhizosphereLGRSSSRRWIVVFDRVALGGLALGLLLYVLPFWREGRLRPAFWITLLSTLLHVYTSRQRGKGE
Ga0310885_1043437823300031943SoilSSSRWIVVFDRVALGGLALGLALYVVPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEA
Ga0310884_1092884123300031944SoilLGRSSSSRWIVVFDRVALGGLALGLALYVVPFWREGRLRPAFWITLLSALLHVYTSRRRGKGEAA
Ga0310902_1022005113300032012SoilVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSALLHVYTSRRRG
Ga0310899_1063286513300032017SoilLGRSSSSRWIVVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLSVLLHVYTSRRRGKGQAA
Ga0315912_1034825623300032157SoilVLLDRVALWGLALGLGLYVMPFWRDGRLRWALALTFVSTLLHIYTSHKRGAGPAAAPPGAAQDGGER
Ga0364925_0409997_29_1933300034147SedimentVFDRVALGGLALGLALYVMPFWREGRLRPAFWITLLATLLHVYTSRRRGKGQAA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.