Metagenome / Metatranscriptome Family F068544

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F068544
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	67 residues
Representative Sequence	MLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEPEMNPGLAVG
Number of Associated Samples	95
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.61 %
% of genes near scaffold ends (potentially truncated)	23.39 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (96.774 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (12.903 % of family members)
Environment Ontology (ENVO)	Unclassified (36.290 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.742 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.74% β-sheet: 0.00% Coil/Unstructured: 54.26%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF03009	GDPD	29.03
PF01979	Amidohydro_1	4.84
PF07676	PD40	4.84
PF00246	Peptidase_M14	1.61
PF13345	Obsolete Pfam Family	0.81
PF00326	Peptidase_S9	0.81
PF07478	Dala_Dala_lig_C	0.81
PF04002	RadC	0.81
PF13709	DUF4159	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	29.03
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.58 %
Unclassified	root	N/A	2.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.58 %
Unclassified	root	N/A	2.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.77 %
Unclassified	root	N/A	2.42 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.81 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	57.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.23 %
Unclassified	root	N/A	2.42 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	57.26 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.23 %
Unclassified	root	N/A	2.42 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	7.26 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	7.26 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Tylenchina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Panagrolaimomorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Strongyloidoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Strongyloididae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Parastrongyloides	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	4.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.03 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.23 %
Unclassified	root	N/A	2.42 %
Parastrongyloides trichosuri	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8697461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1832	Open in IMG/M
2228664021\|ICCgaii200_c0820887	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	941	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0867787	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0869915	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	590	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0870054	All Organisms → cellular organisms → Bacteria	2372	Open in IMG/M
3300000891\|JGI10214J12806_11372897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	634	Open in IMG/M
3300002123\|C687J26634_10323789	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	516	Open in IMG/M
3300003319\|soilL2_10070246	All Organisms → cellular organisms → Bacteria	4581	Open in IMG/M
3300003319\|soilL2_10162387	All Organisms → cellular organisms → Bacteria	3805	Open in IMG/M
3300004019\|Ga0055439_10029042	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1390	Open in IMG/M
3300004114\|Ga0062593_101278312	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	776	Open in IMG/M
3300004156\|Ga0062589_100835278	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300004156\|Ga0062589_102857038	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	504	Open in IMG/M
3300004463\|Ga0063356_100018977	All Organisms → cellular organisms → Bacteria → Proteobacteria	6389	Open in IMG/M
3300004463\|Ga0063356_102406435	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	805	Open in IMG/M
3300004480\|Ga0062592_100237044	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1324	Open in IMG/M
3300005093\|Ga0062594_101058308	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	787	Open in IMG/M
3300005294\|Ga0065705_10085213	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	532	Open in IMG/M
3300005294\|Ga0065705_10879659	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	582	Open in IMG/M
3300005367\|Ga0070667_100170136	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300005444\|Ga0070694_100032891	All Organisms → cellular organisms → Bacteria	3408	Open in IMG/M
3300005445\|Ga0070708_100220468	All Organisms → cellular organisms → Bacteria	1779	Open in IMG/M
3300005445\|Ga0070708_100716813	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300005468\|Ga0070707_100131798	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2431	Open in IMG/M
3300005468\|Ga0070707_100214616	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300005468\|Ga0070707_101060353	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	776	Open in IMG/M
3300005471\|Ga0070698_100006203	All Organisms → cellular organisms → Bacteria	13017	Open in IMG/M
3300005471\|Ga0070698_100071265	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	3485	Open in IMG/M
3300005471\|Ga0070698_100173988	All Organisms → cellular organisms → Bacteria	2093	Open in IMG/M
3300005471\|Ga0070698_100779135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	900	Open in IMG/M
3300005518\|Ga0070699_100000123	All Organisms → cellular organisms → Bacteria	71157	Open in IMG/M
3300005518\|Ga0070699_101805112	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	560	Open in IMG/M
3300005545\|Ga0070695_101486389	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	563	Open in IMG/M
3300005617\|Ga0068859_100666679	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300005836\|Ga0074470_10017016	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300005841\|Ga0068863_100054106	All Organisms → cellular organisms → Bacteria	3804	Open in IMG/M
3300005844\|Ga0068862_100043857	All Organisms → cellular organisms → Bacteria	3813	Open in IMG/M
3300006032\|Ga0066696_10492715	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300006845\|Ga0075421_100453356	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1532	Open in IMG/M
3300006853\|Ga0075420_100072896	All Organisms → cellular organisms → Bacteria → Proteobacteria	3040	Open in IMG/M
3300006871\|Ga0075434_100105981	All Organisms → cellular organisms → Bacteria	2821	Open in IMG/M
3300006871\|Ga0075434_100589379	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300006880\|Ga0075429_100536071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1026	Open in IMG/M
3300006918\|Ga0079216_10112469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1344	Open in IMG/M
3300006969\|Ga0075419_11367218	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	527	Open in IMG/M
3300009012\|Ga0066710_100190204	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2909	Open in IMG/M
3300009012\|Ga0066710_102655163	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300009100\|Ga0075418_10771627	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1038	Open in IMG/M
3300009148\|Ga0105243_13022697	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	510	Open in IMG/M
3300009553\|Ga0105249_10053005	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3707	Open in IMG/M
3300009553\|Ga0105249_12268088	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	616	Open in IMG/M
3300009870\|Ga0131092_10905856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	723	Open in IMG/M
3300009873\|Ga0131077_10967306	Not Available	728	Open in IMG/M
3300010110\|Ga0126316_1017713	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	511	Open in IMG/M
3300010391\|Ga0136847_10200109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1207	Open in IMG/M
3300010391\|Ga0136847_11273103	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	653	Open in IMG/M
3300010391\|Ga0136847_12869969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	510	Open in IMG/M
3300010399\|Ga0134127_10605510	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1125	Open in IMG/M
3300011419\|Ga0137446_1091945	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	715	Open in IMG/M
3300011429\|Ga0137455_1139872	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	720	Open in IMG/M
3300011444\|Ga0137463_1001434	All Organisms → cellular organisms → Bacteria → Proteobacteria	7913	Open in IMG/M
3300012355\|Ga0137369_10857316	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	614	Open in IMG/M
3300012360\|Ga0137375_10172436	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2085	Open in IMG/M
3300012360\|Ga0137375_10421664	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1159	Open in IMG/M
3300012532\|Ga0137373_11018434	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	598	Open in IMG/M
3300012923\|Ga0137359_11089676	Not Available	683	Open in IMG/M
3300012972\|Ga0134077_10250983	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	732	Open in IMG/M
3300013308\|Ga0157375_11385307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	828	Open in IMG/M
3300014881\|Ga0180094_1163133	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	522	Open in IMG/M
3300014884\|Ga0180104_1105119	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	807	Open in IMG/M
3300015195\|Ga0167658_1077073	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	763	Open in IMG/M
3300015252\|Ga0180075_1091083	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	540	Open in IMG/M
3300018053\|Ga0184626_10224184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	792	Open in IMG/M
3300018059\|Ga0184615_10011533	All Organisms → cellular organisms → Bacteria	4823	Open in IMG/M
3300018063\|Ga0184637_10040840	All Organisms → cellular organisms → Bacteria → Proteobacteria	2821	Open in IMG/M
3300018084\|Ga0184629_10003909	All Organisms → cellular organisms → Bacteria	5558	Open in IMG/M
3300018422\|Ga0190265_11331708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300018422\|Ga0190265_12911234	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	572	Open in IMG/M
3300018429\|Ga0190272_12408565	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	571	Open in IMG/M
3300018433\|Ga0066667_12329949	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300018469\|Ga0190270_11119405	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	821	Open in IMG/M
3300019458\|Ga0187892_10062762	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300019458\|Ga0187892_10329943	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	749	Open in IMG/M
3300020067\|Ga0180109_1468558	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	530	Open in IMG/M
3300020068\|Ga0184649_1575039	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300021859\|Ga0210334_11075232	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	615	Open in IMG/M
3300025146\|Ga0209322_10286203	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	675	Open in IMG/M
3300025160\|Ga0209109_10146775	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1190	Open in IMG/M
3300025164\|Ga0209521_10211960	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	1154	Open in IMG/M
3300025174\|Ga0209324_10648147	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	613	Open in IMG/M
3300025318\|Ga0209519_10744772	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	523	Open in IMG/M
3300025324\|Ga0209640_10026317	All Organisms → cellular organisms → Bacteria	5072	Open in IMG/M
3300025325\|Ga0209341_10916856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	652	Open in IMG/M
3300025558\|Ga0210139_1054747	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300025917\|Ga0207660_10988592	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	686	Open in IMG/M
3300025922\|Ga0207646_10211590	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1751	Open in IMG/M
3300025922\|Ga0207646_10624685	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	966	Open in IMG/M
3300025922\|Ga0207646_11413654	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	605	Open in IMG/M
3300025986\|Ga0207658_11785253	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	561	Open in IMG/M
3300026035\|Ga0207703_10395595	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1281	Open in IMG/M
3300026088\|Ga0207641_10027471	All Organisms → cellular organisms → Bacteria	4700	Open in IMG/M
3300026535\|Ga0256867_10002350	All Organisms → cellular organisms → Bacteria	8119	Open in IMG/M
3300027543\|Ga0209999_1010417	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300027637\|Ga0209818_1002075	All Organisms → cellular organisms → Bacteria	3951	Open in IMG/M
3300027880\|Ga0209481_10053979	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300027886\|Ga0209486_10078992	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300027886\|Ga0209486_10146004	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300027909\|Ga0209382_10367306	All Organisms → cellular organisms → Bacteria	1609	Open in IMG/M
3300027909\|Ga0209382_10517438	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1312	Open in IMG/M
3300027909\|Ga0209382_10669622	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1121	Open in IMG/M
3300028812\|Ga0247825_10832372	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	667	Open in IMG/M
3300028812\|Ga0247825_11130837	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	571	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1003296	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3077	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10017011	All Organisms → cellular organisms → Bacteria	1867	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10086435	Not Available	836	Open in IMG/M
3300031229\|Ga0299913_10173613	All Organisms → cellular organisms → Bacteria	2130	Open in IMG/M
3300031229\|Ga0299913_10768918	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	938	Open in IMG/M
(restricted) 3300031237\|Ga0255334_1026787	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	663	Open in IMG/M
3300031548\|Ga0307408_100017203	All Organisms → cellular organisms → Bacteria	4837	Open in IMG/M
3300031716\|Ga0310813_10052517	All Organisms → cellular organisms → Bacteria	3008	Open in IMG/M
3300032421\|Ga0310812_10396457	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	620	Open in IMG/M
3300033433\|Ga0326726_10110699	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2469	Open in IMG/M
3300033501\|Ga0326732_1067286	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	587	Open in IMG/M
3300033550\|Ga0247829_10683663	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	854	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.42%
Host-Associated	Host-Associated	20.97%
Engineered	Engineered	1.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.29%
Plants	Host-Associated → Plants	20.97%
Aquatic	Environmental → Aquatic	16.13%
Wastewater	Engineered → Wastewater	1.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.52%
Sediment	Environmental → Aquatic → Sediment	8.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.45%
Freshwater	Environmental → Aquatic → Freshwater	4.84%
Marine	Environmental → Aquatic → Marine	2.42%
Peat	Environmental → Terrestrial → Peat	1.61%
Cave	Environmental → Terrestrial → Cave	1.61%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.71%
Loam	Environmental → Terrestrial → Soil → Loam	16.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.45%
Sand	Environmental → Terrestrial → Soil → Sand	3.23%
Lake	Environmental → Aquatic → Freshwater → Lake	2.42%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.61%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.81%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.06%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.45%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.23%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.42%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.61%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.61%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.61%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.81%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.81%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.65%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.03%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.23%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.23%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	3.23%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	2.42%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.42%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.42%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.61%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.61%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.61%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.61%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.81%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.81%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.81%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.81%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.81%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002123	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_3	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015252	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020068	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021859	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025146	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025174	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 3	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031237 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033501	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fraction	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02989600	2088090015	Soil	MERRPEMLDPVMYHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGVEDESDFDEPEAQPGLAVG
ICCgaii200_08208872	2228664021	Soil	MLDPVMYHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGVEDESDFDEPEAQPGLAVG
ICChiseqgaiiDRAFT_08677871	3300000033	Soil	LGKRKAVDEMLDPVMHHLHQARETATWIAQLMRIDPELMLPAALPLLAARLMDAGGIEDDSELDEPEANSGLAVG*
ICChiseqgaiiDRAFT_08699151	3300000033	Soil	MLDPVMHHLHQARETATWIAQLMRIDPELMLPAALPLLAARLMDAGGIEDDSELDEPEANSGLAVG*
ICChiseqgaiiDRAFT_08700542	3300000033	Soil	MLDPVMYHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGVEDESDFDEPEAQPGLAVG*
JGI10214J12806_113728971	3300000891	Soil	VERSKRGAMERRYGMLDPVMHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEADLSDPSIGLAAG*
C687J26634_103237891	3300002123	Soil	MLDPVMQHLSEAKQTATWVAQLMHLDPDLMLPAALPLLAARLMDAGGVEEETDGEEDSEV
soilL2_100702463	3300003319	Sugarcane Root And Bulk Soil	MLDPVVQSIAQAKQTATWVAQLMHLDPELMIPAALPLLAARLMDAGGVEEDPEEQPDGNPDLSLAAG*
soilL2_101623873	3300003319	Sugarcane Root And Bulk Soil	MLDPVVQSLTQAKQTATWVAQLMHLDPELMIPAALPLLAARLMDAGGVEDDPEEQTDGTSDLSLAVG*
Ga0055439_100290422	3300004019	Natural And Restored Wetlands	MLDPVVQHLTQAKQAATWVAQLMHLDPELMIPAALPLLAARLMDAGGVEEDPEPEPGDPQFGLAVG*
Ga0062593_1012783122	3300004114	Soil	MLDPVMHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEADLSDPSIGLAAG*
Ga0062589_1008352782	3300004156	Soil	MLDPVMHHLHQARETATWIAQLMRVDPELMLPAALPLLAARLMDAGGCEEDAEIGPLEPSID
Ga0062589_1028570381	3300004156	Soil	MLDPVMQHLHQARETATWIAQLMRIDPELMLPAALPLLAARLMDAGGIEDDSELDEPEANSGLAVG*
Ga0063356_1000189776	3300004463	Arabidopsis Thaliana Rhizosphere	MLDPVLHHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGYDDDAELAPLDPSVDLAAG*
Ga0063356_1024064352	3300004463	Arabidopsis Thaliana Rhizosphere	MLDPVMQHLHQAKETASWVAQLMRLDPDLMLPAALPLLAARLMDAGGIDDETEGDATDMNPGLAVG*
Ga0062592_1002370442	3300004480	Soil	MLDPVLHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIDDEADGDDPELNPGLAVG*
Ga0062594_1010583082	3300005093	Soil	MLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEPEMNPGLAVG*
Ga0065705_100852131	3300005294	Switchgrass Rhizosphere	MLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEP
Ga0065705_108796591	3300005294	Switchgrass Rhizosphere	MLDPVLHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGVEDDPEPDLSDPSVG
Ga0070667_1001701363	3300005367	Switchgrass Rhizosphere	MLGVMERRIQMLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAELGLLDPSIDLAAG*
Ga0070694_1000328913	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MERRYDMLDPVMHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEADLSDPSIGLAAG*
Ga0070708_1002204682	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLHHLQQAKQTAAWVAQLMRLDPELMLPAALPLVAARLMDAGGFEEDSESELADPNIGLAAG*
Ga0070708_1007168131	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVMHHLQQAKQTAAWVAQLMRLDPELMLPAALPLIAARLMDAGGVEDDPEPELGDASMGLAAG*
Ga0070707_1001317983	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLHHLQQAKQTAVWVAQLMRVDPELMLPAALPLLAARLMDAGGVEDDDADTADPSVGLAAG*
Ga0070707_1002146162	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLYHLQQAKQTAIWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEPDLTDPSVGLAAG*
Ga0070707_1010603532	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVMHHLQQAKQTAMWVAQLMRLDPELMLPAALPLVAARLMDAGGIEDDPEPELADPSMGLAAG*
Ga0070698_10000620312	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLHHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGCDDDVELAPLDPSVDLAAG*
Ga0070698_1000712654	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGIEDDPEPDLADPSVGLAAG*
Ga0070698_1001739882	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVMHHLQQAKQTAMWVAQLMRLDPELMLPAALPLVAARLMDAGGVEDDPEPELADPSMGLAAG*
Ga0070698_1007791351	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLHHLQQAKQTAAWVAQLMRLDPELMLPAALPLVAARLMDAGGFEDDPESELADPNKGLAAG*
Ga0070699_10000012315	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVMHHLHQARETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGVEDDDAELDDPESNAGLAVG*
Ga0070699_1018051121	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MERRVSMLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDA
Ga0070695_1014863891	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEPEMNPGLAVG*
Ga0068859_1006666792	3300005617	Switchgrass Rhizosphere	MLDPVMHHLHQARETATWIAQLMRVDPELMLPAALPLLAARLMDAGGCEEDSEFGPLEPSIDLAAG*
Ga0074470_100170162	3300005836	Sediment (Intertidal)	MIDPVIQHLHQAKQTAIWVAQLMQLDPELVLPAALPLVAARLMDAGGVDDDIEAEGMDPSLGLAIG*
Ga0068863_1000541062	3300005841	Switchgrass Rhizosphere	MERRIQMLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAELGLLDPSIDLAAG*
Ga0068862_1000438573	3300005844	Switchgrass Rhizosphere	EMLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEPEMNPGLAVG*
Ga0066696_104927151	3300006032	Soil	MFDPVFHHLQQAKQTAIWVAQLMRVDPELMLPAALPLLAARLMDAGGMDDDPDEGDAELEMAVG*
Ga0075421_1004533561	3300006845	Populus Rhizosphere	MFDPMLQHLSQAKQTAVWFAQLMRLDPDLVIPAALPLLAARLMDAGGIDEDPSDDAGTGSAAEYAVG*
Ga0075420_1000728963	3300006853	Populus Rhizosphere	MHHLHQARETATWIAQLMRIDPELMLPAALPLLAARLMDAGGIEDDSELDEPEANSGLAVG*
Ga0075434_1001059812	3300006871	Populus Rhizosphere	MLDPVMHHLQQAKQTAAWVAQLMRLDPELMLPAALPLIAARLMDAGGVEDEPESELGDASIGLAAG*
Ga0075434_1005893792	3300006871	Populus Rhizosphere	MLDPVMHHLQQAKQTAAWVAQLMRLDPELMLPAALPLIAARLMDAGGVEDEPEPELGDASMGLAAG*
Ga0075429_1005360711	3300006880	Populus Rhizosphere	QQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGIEDDPEPDLADPSVGLAAG*
Ga0079216_101124691	3300006918	Agricultural Soil	MLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDF
Ga0075419_113672182	3300006969	Populus Rhizosphere	DPMLQHLSQAKQTAFWFAQLMRLDPDLVIPAALPLLAARLMDAGGIDEDPSDDAGTGSAAEYAVG*
Ga0066710_1001902042	3300009012	Grasslands Soil	MFDPVFHHLQQAKQTAIWVAQLMRVDPELMLPAALPLLAARLMDAGGMDDDPDEGDAELEMAVG
Ga0066710_1026551631	3300009012	Grasslands Soil	MLDPVLHHLQQAKQTAAWVAQLMRLDPELMLPAALPLVAARLMDAGGFEDDTESELADPNMGLAAG
Ga0075418_107716272	3300009100	Populus Rhizosphere	MERRLGMLDPVLHHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGCDDDAELAPLDPSVDLAAG*
Ga0105243_130226971	3300009148	Miscanthus Rhizosphere	MLDPVIYHLQQAKQTATWVAQLMRLDPELMLPAALPLLAARLMDAGGMDDEPEVELGDPSVGLAAG*
Ga0105249_100530052	3300009553	Switchgrass Rhizosphere	MERRVSMLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEPEMNPGLAVG*
Ga0105249_122680881	3300009553	Switchgrass Rhizosphere	MLDPVIYHLQQAKQTATWVAQLMRLDPELMLPAALPLLAARLMDAGGMDDEPEAELGDPSVGLAAG*
Ga0131092_109058561	3300009870	Activated Sludge	VSKGGASVIDPVLQHLQQAKHTAAMVAQMMRLDPELVLPAALPLLAARLMDAGGVEEEPEPDQSDPATGMAVG*
Ga0131077_109673061	3300009873	Wastewater	VSKGGASVIDPVLQHLQQAKHTAAVVAQMMRLDPDLVLPAALPLLAARLMDAGGVEEEAEPDQADSASGMAVG*
Ga0126316_10177131	3300010110	Soil	MLDPVMHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGMEDDAEADLADPSMGLAAG*
Ga0136847_102001092	3300010391	Freshwater Sediment	MLDPVMHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEPELADPSIGLAAG*
Ga0136847_112731032	3300010391	Freshwater Sediment	MLDPVLHHLQQAKQTAVWVAQLMRVDPELMLPAALPLLAARLMDAGGVEDDPDPDTADPSVGLAAS*
Ga0136847_128699691	3300010391	Freshwater Sediment	MERRLGMLDPVLHHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGCDDDVELSQLDSSVDLAAG*
Ga0134127_106055101	3300010399	Terrestrial Soil	MERRNQMLDPVMHHLHQARETATWIAQLMRVDPELMLPAALPLLAARLMDAGGCEEDAEFGPLEPSIDLAAG*
Ga0137446_10919452	3300011419	Soil	MERRFEMLDPVMHHLHQARETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGVEDDDSELDEPESNTGLAVG*
Ga0137455_11398722	3300011429	Soil	MLDPMMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIDDDADGDDPELNPGLAVG*
Ga0137463_10014348	3300011444	Soil	MERRIQMLDPVLHHLHQAKETASWVAQLMRVDPELMLPAALPLLAARLMDAGGCEDDVEPGLLDSSIDLAAG*
Ga0137369_108573162	3300012355	Vadose Zone Soil	VELFLLYRGSEVTAALEIGAMERQTAMLDPVLHHLQQAKQTAIWVAQLMRVDPELMLPAALPLLAARLMDAGGVDDDPDEGESDLELAVG*
Ga0137375_101724362	3300012360	Vadose Zone Soil	MERQTAMLDPVLHHLQQAKQTAIWVAQLMRVDPELMLPAALPLLAARLMDAGGVDDDPDEGESDLELAVG*
Ga0137375_104216642	3300012360	Vadose Zone Soil	MLDPVLHHLQQAKQTAIWVAQLMRVDPDLMLPAALPLLAARLMDAGGAEDEVEDGDQEMGLAVG*
Ga0137373_110184341	3300012532	Vadose Zone Soil	QQAKQTAIWVAQLMRVDPDLMLPAALPLLAARLMDAGGAEDEVEDGDQEMGLAVG*
Ga0137359_110896762	3300012923	Vadose Zone Soil	MERRRAMFDPVFHHLQQAKQTAIWVAQLMRVDPELMLPAALPLLAARLMDAGGMDDEPDDGDAELEMAVG*
Ga0134077_102509831	3300012972	Grasslands Soil	MERRRAMFDPVFHHLQQAKQTAIWVAQLMRVDPELMLPAALPLLAARLMDAGGMDDDADEGDGELEMAVG*
Ga0157375_113853071	3300013308	Miscanthus Rhizosphere	HLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDDADLDEPEMNPGLAVG*
Ga0180094_11631331	3300014881	Soil	MERRFEMLDPVMHHLHQARETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGVEDDDSELDEPEANSGLAVG*
Ga0180104_11051192	3300014884	Soil	MERRFGMLDPVLHHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGCDDDAELAPLDPSVDLAAG*
Ga0167658_10770731	3300015195	Glacier Forefield Soil	MERRNPMLDPVLHHLHQAKETASWVAQLMRLDPELMLPAALPLLAARLMDAGGYEDDVEGTPLDSTLDLAAG*
Ga0180075_10910831	3300015252	Soil	MERRVSMLDPVMHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIDDDADLDEPEMNSGLAVG*
Ga0184626_102241842	3300018053	Groundwater Sediment	MLDPVLQHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGYDDDAELTPLDQSVDLAAG
Ga0184615_100115333	3300018059	Groundwater Sediment	MERRFEMLDPVMHHLHQARETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGVEDDDSELDEPEANSGLAVG
Ga0184637_100408402	3300018063	Groundwater Sediment	MLDPVLQHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGCDDDAELTPLDPSVDLAAG
Ga0184629_100039093	3300018084	Groundwater Sediment	MLDPVLQHLHQAKETATWVAQLMRVDPDLMLPAALPLLAARLMDAGGCDDDAELAPLDPSADLAAG
Ga0190265_113317081	3300018422	Soil	MLDPVLHHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGYDDDEEESPRIGPSVDLAAG
Ga0190265_129112341	3300018422	Soil	MLDPVLQHLHQAKETATWIAELMRIDPDLMLPAALPLLAARLMDAGGYDDEDEDPTLMDPSVDLAAG
Ga0190272_124085651	3300018429	Soil	MLDPVLQHLHQAKETATWIAQLMRVDPDLMLPAALPLLAARLMDAGGYDDDEEPALMDPSVDLAAG
Ga0066667_123299492	3300018433	Grasslands Soil	AKQTASWVAQLMRVDPELMLPAALPLLAARLMDAGGMDDDPDEGDAELEMAVG
Ga0190270_111194052	3300018469	Soil	MLDPVMHHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEEDTESDETDVDPSLAVG
Ga0187892_100627622	3300019458	Bio-Ooze	MLDPVVQHLSQAKQTATWVSQLMHLDPELMLPAALPLLAARLMDAGGVEDEPDPGPDDPELKLAAG
Ga0187892_103299431	3300019458	Bio-Ooze	MLDPVLLHLQQAKQTAIWVAQLIRLEPELMLPAALPLVAARLMDAGGMDEEVDEGEAGSG
Ga0180109_14685581	3300020067	Groundwater Sediment	MLDPVLQHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGYDDDPELTPLDQSVDL
Ga0184649_15750392	3300020068	Groundwater Sediment	MLDPVMHHLHQARETATWVAQLMRVDPDLMLPAALPLLAARLMDAGGVEDDDSELDEPEANSGLAVG
Ga0210334_110752321	3300021859	Estuarine	MLDPVMHHLAQAKATAQWFAQLIQLDPELVLPAALPLLAARLMDAGGVEEEGDEEFPEAELAVS
Ga0209322_102862031	3300025146	Soil	MLDPVMQHLSEAKQTATWVAQLMHLDPDLMLPAALPLLAARLMDAGGVEEETDGEEDSEVQVA
Ga0209109_101467751	3300025160	Soil	MIDPVLQHLSQAKQTAAWIAQLMHLDPELVVPAAMPLLAARLMDAGGVEEEESEGEPENPEAQVA
Ga0209521_102119601	3300025164	Soil	VPMLDPVMQHLSEAKQTATWVAQLMHLDPDLMLPAALPLLAARLMDAGGVEEETDGEEDSEVQVA
Ga0209324_106481472	3300025174	Soil	MLDPVMQHLSEAKQTATWVAQLMHLDPDLMLPAALPLLAARLMDAGGVEEETDGEEDSE
Ga0209519_107447721	3300025318	Soil	MIDPVMQHLSQAKQTAAWIAQLMHLDPELVVPAAMPLLAARLMDAGGVEEEESEGEPENPEAQVA
Ga0209640_100263172	3300025324	Soil	MIDPVMQHLSQAKQTAAWIAQLMHLDPELVVPAAMPLLAARLMDAGGVEEEESEGEPEDPEVQVA
Ga0209341_109168561	3300025325	Soil	MLDPVMQHLSEAKQTATWVAQLMHLDPDLMLPAALPLLAARLMDAGGVEEETDGEE
Ga0210139_10547472	3300025558	Natural And Restored Wetlands	MLDPVVQHLTQAKQAATWVAQLMHLDPELMIPAALPLLAARLMDAGGVEEDPEPEPGDPQFGLAVG
Ga0207660_109885921	3300025917	Corn Rhizosphere	MERRYGMLDPVMHHLQQAKQTAVWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEADLSDPSIGLAAG
Ga0207646_102115902	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLDPVLYHLQQAKQTAIWVAQLMRLDPELMLPAALPLVAARLMDAGGVDDDPEPDLTDPSVGLAAG
Ga0207646_106246851	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LKGWFSMLDPVMHHLQQAKQTAAWVAQLMRLDPELMLPAALPLIAARLMDAGGVEDDPEPELGDASMGLAAG
Ga0207646_114136542	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	SGKSSKRGARERWYRMLDPVMHHLQQAKQTAMWVAQLMRLDPELMLPAALPLVAARLMDAGGIEDDPEPELADPSMGLAAG
Ga0207658_117852531	3300025986	Switchgrass Rhizosphere	MLGVMERRIQMLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAELGLLDPSIDLAAG
Ga0207703_103955952	3300026035	Switchgrass Rhizosphere	MLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAELGLLDPSIDLAAG
Ga0207641_100274713	3300026088	Switchgrass Rhizosphere	MERRIQMLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAELGLLDPSIDLAAG
Ga0256867_100023506	3300026535	Soil	MFDPMLLQLTQAKQTAVWFAQLMRLDPDLVIPAALPLLAARLMDAGGIEEETAEDSSNGHAPEYAVG
Ga0209999_10104173	3300027543	Arabidopsis Thaliana Rhizosphere	MLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFDEPEAEPGLAVG
Ga0209818_10020753	3300027637	Agricultural Soil	MLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFDEPEAQPGLAVG
Ga0209481_100539792	3300027880	Populus Rhizosphere	MLDPVMHHLHQARETATWIAQLMRIDPELMLPAALPLLAARLMDAGGIEDDSELDEPEANSGLAVG
Ga0209486_100789921	3300027886	Agricultural Soil	VTRDPNLGGTERRPEMLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFDEPEAQPGLAVG
Ga0209486_101460042	3300027886	Agricultural Soil	VTRDPNLGGTERRPEMLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFEDPEAQPGLAVG
Ga0209382_103673062	3300027909	Populus Rhizosphere	MFDPMLQHLSQAKQTAVWFAQLMRLDPDLVIPAALPLLAARLMDAGGIDEDPSDDAGTGSAAEYAVG
Ga0209382_105174382	3300027909	Populus Rhizosphere	MLDPVLHHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGCDDDAELAPLDPSVDLAAG
Ga0209382_106696222	3300027909	Populus Rhizosphere	MLDPVLQHLHQAKETATWVAQLMRIDPDLMLPAALPLLAARLMDAGGYDDDAELNPLDQSVDLAAG
Ga0247825_108323722	3300028812	Soil	VTKDPNVGGMERRPEMLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFDEPEAQPGLAVG
Ga0247825_111308372	3300028812	Soil	VMYHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFDEPEAQPGLAVG
(restricted) Ga0255311_10032963	3300031150	Sandy Soil	MLDPVMHHLQQAKQTAMWVAQLMRLDPELMVPAALPLVAARLMDAGGVEDDPEPELADPSMGLAAG
(restricted) Ga0255310_100170112	3300031197	Sandy Soil	MLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGVEDESDFDEPEAQPGMAVG
(restricted) Ga0255310_100864351	3300031197	Sandy Soil	RRPAGTRAFGRRLQMLDPVVQSLTQAKQTATWVAQLMHLDPELMIPAALPLLAARLMDAGGVEEDPEEQPDGSSDLSLAAG
Ga0299913_101736132	3300031229	Soil	MFDPMLQQLTQAKQTAVWFAQLMRLDPDLVIPAALPLLAARLMDAGGIEEESGDDNGGVNAPEYAVG
Ga0299913_107689182	3300031229	Soil	MFDPMLLQLSQAKQTAVWFAQLMRLDPDLVIPAALPLLAARLMDAGGIEDESSEDSGSGSSAEYAVG
(restricted) Ga0255334_10267871	3300031237	Sandy Soil	KGGRNMLDPVMYHLHQARETATWVAQLMRIDPELMLPAALPLLAARLMDAGGVEDEADFDEPEAQPGMAAG
Ga0307408_1000172031	3300031548	Rhizosphere	MLDPVMYHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDSDEPEAQPGLAVG
Ga0310813_100525173	3300031716	Soil	MLDPVMHHLQQAKQTAAWVAQLMRLDPELMLPAALPLIAARLMDAGGVEDEPESELGDASIGLAAG
Ga0310812_103964571	3300032421	Soil	MLDPVMHHLQQAKQTAAWVAQLMRLDPELMLPAALPLIAARLMDAGGVEDEPEPELGDASMGLAAG
Ga0326726_101106992	3300033433	Peat Soil	MERRIQMLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAEPGMRDPSIDLAAG
Ga0326732_10672862	3300033501	Peat Soil	MLDPVLHHLHQAKETATWVAQLMRVDPELMLPAALPLLAARLMDAGGWEDDAEPGMRDPSIDLAAG
Ga0247829_106836631	3300033550	Soil	LGGMERRPEMLDPVMYHLHQAKETATWVAQLMRIDPELMLPAALPLLAARLMDAGGIEDESDFDEPEAQPGLAVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters