Metagenome / Metatranscriptome Family F068531

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F068531
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	97 residues
Representative Sequence	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPGELLALARALAHDV
Number of Associated Samples	108
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.19 %
% of genes near scaffold ends (potentially truncated)	59.68 %
% of genes from short scaffolds (< 2000 bps)	58.06 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (58.065 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.968 % of family members)
Environment Ontology (ENVO)	Unclassified (33.065 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.903 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.90% β-sheet: 6.50% Coil/Unstructured: 49.59%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.124.1.1: Phospholipase C	d1ca1a1	1ca1	0.6613
a.124.1.1: Phospholipase C	d1p5xa_	1p5x	0.64376
a.205.1.1: Hsp90 co-chaperone CDC37	d1us7b_	1us7	0.64216
a.246.2.1: TTHA0068-like	d2ijqa1	2ijq	0.62877
a.24.19.0: automated matches	d3iqca_	3iqc	0.61524

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF00069	Pkinase	29.84
PF09694	Gcw_chp	8.06
PF01804	Penicil_amidase	2.42
PF00117	GATase	1.61
PF07642	BBP2	1.61
PF12850	Metallophos_2	0.81
PF00202	Aminotran_3	0.81
PF03167	UDG	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	119.35
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.42
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.81
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.81
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.06 %
Unclassified	root	N/A	41.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.06 %
Unclassified	root	N/A	41.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.06 %
Unclassified	root	N/A	41.94 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	54.03 %
Unclassified	root	N/A	41.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	54.03 %
Unclassified	root	N/A	41.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	54.03 %
Unclassified	root	N/A	41.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	54.03 %
Unclassified	root	N/A	41.94 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	53.23 %
Unclassified	root	N/A	41.94 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.81 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	53.23 %
Unclassified	root	N/A	41.94 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.81 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	53.23 %
Unclassified	root	N/A	41.94 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.81 %
unclassified Micromonospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	53.23 %
Unclassified	root	N/A	41.94 %
Micromonospora sp. MP36	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. MP36	0.81 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	0.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.81 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459018\|G1P06HT02FLNWJ	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	533	Open in IMG/M
3300000956\|JGI10216J12902_109977578	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1332	Open in IMG/M
3300000956\|JGI10216J12902_115959042	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	624	Open in IMG/M
3300004114\|Ga0062593_102419105	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	593	Open in IMG/M
3300004463\|Ga0063356_100893980	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1253	Open in IMG/M
3300004479\|Ga0062595_102097553	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	550	Open in IMG/M
3300004643\|Ga0062591_100849787	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	849	Open in IMG/M
3300004643\|Ga0062591_102856073	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	512	Open in IMG/M
3300004782\|Ga0062382_10326518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	707	Open in IMG/M
3300005332\|Ga0066388_106890138	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	572	Open in IMG/M
3300005356\|Ga0070674_100765121	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	831	Open in IMG/M
3300005437\|Ga0070710_11542546	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	500	Open in IMG/M
3300005445\|Ga0070708_100439800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1230	Open in IMG/M
3300005471\|Ga0070698_100310741	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1507	Open in IMG/M
3300005518\|Ga0070699_100238125	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300005535\|Ga0070684_102168170	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	524	Open in IMG/M
3300005562\|Ga0058697_10209517	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	888	Open in IMG/M
3300005618\|Ga0068864_100168168	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1997	Open in IMG/M
3300005833\|Ga0074472_10044000	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	954	Open in IMG/M
3300006904\|Ga0075424_102586649	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	531	Open in IMG/M
3300006904\|Ga0075424_102656923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	523	Open in IMG/M
3300009011\|Ga0105251_10313560	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	712	Open in IMG/M
3300009012\|Ga0066710_103880888	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	560	Open in IMG/M
3300009137\|Ga0066709_101869581	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	838	Open in IMG/M
3300009162\|Ga0075423_10343117	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300010371\|Ga0134125_12664843	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	543	Open in IMG/M
3300010396\|Ga0134126_11679287	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	698	Open in IMG/M
3300012187\|Ga0136622_10341084	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	628	Open in IMG/M
3300012206\|Ga0137380_11244185	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	629	Open in IMG/M
3300012360\|Ga0137375_10119008	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300012685\|Ga0137397_11000138	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	615	Open in IMG/M
3300012929\|Ga0137404_11621067	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	600	Open in IMG/M
3300012930\|Ga0137407_11406493	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	663	Open in IMG/M
3300012955\|Ga0164298_10412555	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	876	Open in IMG/M
3300012957\|Ga0164303_10350160	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	892	Open in IMG/M
3300012986\|Ga0164304_11821236	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	509	Open in IMG/M
3300012987\|Ga0164307_10611384	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	842	Open in IMG/M
3300012988\|Ga0164306_11469357	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	583	Open in IMG/M
3300012989\|Ga0164305_10355016	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1106	Open in IMG/M
3300014314\|Ga0075316_1219969	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	508	Open in IMG/M
3300014325\|Ga0163163_12535254	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	571	Open in IMG/M
3300015371\|Ga0132258_13974700	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1004	Open in IMG/M
3300018028\|Ga0184608_10075998	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1369	Open in IMG/M
3300018429\|Ga0190272_10864280	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	843	Open in IMG/M
3300018469\|Ga0190270_11588904	Not Available	705	Open in IMG/M
3300022756\|Ga0222622_11061799	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	596	Open in IMG/M
3300025917\|Ga0207660_10503092	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	983	Open in IMG/M
3300025922\|Ga0207646_10804153	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	837	Open in IMG/M
3300025945\|Ga0207679_11049699	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	747	Open in IMG/M
3300025988\|Ga0208141_1007057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. MP36	935	Open in IMG/M
3300025992\|Ga0208775_1011318	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	668	Open in IMG/M
3300025993\|Ga0208415_1016777	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	702	Open in IMG/M
3300026088\|Ga0207641_10543273	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1132	Open in IMG/M
3300026142\|Ga0207698_11761135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	635	Open in IMG/M
3300027882\|Ga0209590_10546932	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	746	Open in IMG/M
3300028719\|Ga0307301_10325821	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	505	Open in IMG/M
3300028791\|Ga0307290_10205923	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	721	Open in IMG/M
3300028803\|Ga0307281_10036145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1504	Open in IMG/M
3300028811\|Ga0307292_10287899	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	687	Open in IMG/M
3300028819\|Ga0307296_10829953	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	504	Open in IMG/M
3300028828\|Ga0307312_10558145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	757	Open in IMG/M
3300028889\|Ga0247827_10150800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1235	Open in IMG/M
3300031094\|Ga0308199_1102629	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	632	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1035027	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1201	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1082429	Not Available	779	Open in IMG/M
3300031547\|Ga0310887_10732288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	616	Open in IMG/M
3300031716\|Ga0310813_11772732	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	579	Open in IMG/M
3300031731\|Ga0307405_11691988	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	560	Open in IMG/M
3300031740\|Ga0307468_102566476	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	500	Open in IMG/M
3300031852\|Ga0307410_12039878	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	512	Open in IMG/M
3300032003\|Ga0310897_10555354	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	563	Open in IMG/M
3300033475\|Ga0310811_10078357	All Organisms → cellular organisms → Bacteria → Proteobacteria	4340	Open in IMG/M
3300033513\|Ga0316628_103407702	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	575	Open in IMG/M
3300033550\|Ga0247829_10488270	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1019	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.39%
Host-Associated	Host-Associated	25.81%
Engineered	Engineered	0.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.52%
Plants	Host-Associated → Plants	25.81%
Aquatic	Environmental → Aquatic	8.87%
Solid Waste	Engineered → Solid Waste	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.48%
Marine	Environmental → Aquatic → Marine	3.23%
Sediment	Environmental → Aquatic → Sediment	3.23%
Freshwater	Environmental → Aquatic → Freshwater	2.42%
Roots	Host-Associated → Plants → Roots	0.81%
Phylloplane	Host-Associated → Plants → Phylloplane	0.81%
Grass	Engineered → Solid Waste → Grass	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.77%
Loam	Environmental → Terrestrial → Soil → Loam	8.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.06%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.65%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.23%
Sand	Environmental → Terrestrial → Soil → Sand	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.42%
Lake	Environmental → Aquatic → Freshwater → Lake	0.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.81%
Ice	Environmental → Aquatic → Freshwater → Ice	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.81%
Composting	Engineered → Solid Waste → Grass → Composting	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.06%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.03%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.03%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.23%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.23%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.42%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.81%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.81%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.84%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.84%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.23%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	3.23%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.23%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.42%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.42%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.61%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.61%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.61%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.81%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.81%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.81%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.81%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.81%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.81%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.81%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.81%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459018	Litter degradation MG2	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003992	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012187	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ448 (21.06)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014314	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleA_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025988	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101 (SPAdes)	Environmental	Open in IMG/M
3300025992	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_104 (SPAdes)	Environmental	Open in IMG/M
3300025993	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026053	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2MG_00771950	2170459018	Switchgrass, Maize And Mischanthus Litter	MFGESTGPIAAHTGRLAGATAYMQLASDTPEGTVDARSTFIKRFGDLVALLRVDPANDAAQDLALTAAAAAVEAEPVTVEAGVEWSVVPDDLTLKGRLLARQVELIRVASGTEPHELLALARALSHDAVPVVSSPSIHVEMVQVIAPPAPPRGGVN
JGI10216J12902_1099775782	3300000956	Soil	MVQLGIDAPPEAFLDAKSTFIKRFGDLVALLRADPGNDAAQDLALAAAAAAVGAEPLEVEAGVEWSVISDDLTLKGRLLARQVESLRIAAGTEPDELLALARALSHDFVPVRSSPGIQVEMVKFLTPPAGTPPA
JGI10216J12902_1159590421	3300000956	Soil	MQLAEVLPLELRGRRVDSKSTFVKRFGDLVALLRVDPGNDAAQDLALTAACAAVEAEPVDVEAGLAWSVIPDDLALKGRLLARQVEAVHVAAGAEPHELLALARALSHDTVAIPSCPNVQVQMVDHIVPPPGV
JGI10216J12902_1170240162	3300000956	Soil	MPVAKSRPGMHLAAIPMDPKSTFIKRFGDLVALLRADPGNDAAQELALEAAAAAVADAALRIEAGVEWHVIPSE
Ga0055470_101067801	3300003992	Natural And Restored Wetlands	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVPVELEAGIAWSQIPDDMPLKARMLA
Ga0055439_101110231	3300004019	Natural And Restored Wetlands	VDRKSTFIKRFGDLIALLRADPGNDAAQDLALAAAVAAVESESLEVEAGIAWNVIPDNLTLKGRLLA
Ga0055490_101719721	3300004052	Natural And Restored Wetlands	VDSKSTFIKRFGDLVTLLRMDPGNDAAQELALSAAATAVAERSVEVEAGVEWGSIPDDMGLKARML
Ga0062593_1024191051	3300004114	Soil	LDSRSSFIQRFGDLIALLRADPGNDAAQDLALAAATGAVAAQAVEVEAGIHWSVIPEDLTLKGRLLARQVDVLRVAAGAEPHELLALARALSHDVTPLPSS
Ga0063356_1008356312	3300004463	Arabidopsis Thaliana Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAVVHDRAIEFEAGIAWNQIPDDMPLKARMLARQVDRLRIEAGADPDELQAL
Ga0063356_1008939801	3300004463	Arabidopsis Thaliana Rhizosphere	VDAKSTFVKRFGDLVALLRADPGNDAAQDLALTAACAAVEAEAIEVEAGIAWSVIPDDLSLKGRLLARQVETVRVAAGAEPHELLAL
Ga0062595_1020975531	3300004479	Soil	MQLALDAPRKASVEAAPTFVKRFGDLVALLRADPGNDAAQDLALDTSAAAIATEPVVLEAGVEWSVIPDDLTLKGRMLARHVETIRIAAGTGPDELLILARALSHDTVAVQSSPNIQVQMVQFLAP
Ga0062591_1008497871	3300004643	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSVAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVDTIRIAAGTGPDELLLLARALSHDSVPV
Ga0062591_1028560731	3300004643	Soil	LDSRSSFIQRFGDLIALLRADPGNDAAQDLALAAATGAVAAQAVEVEAGIHWSVIPEDLTLKGRLLARQVDVLRVAAGAEPHELLALARALSHDVTPLPSSPHIELEMV
Ga0062382_103265181	3300004782	Wetland Sediment	VDSKSAFIKRFGDLVVLLRVDPGNDAAQDLALAAAASAVESEPVEVEAGIEWSVIPDELTLKGRLLARRVEVVRIAAGAEPDELLA
Ga0066388_1068901381	3300005332	Tropical Forest Soil	VEANSTFVKRFGDLVALLRADPSNDAAQDLALDTAAGAVETEPVVLEAGVEWSGIPDDLSLKGRLLARHVETIRIAAGTGPDELLTLARALSHD
Ga0070660_1005691162	3300005339	Corn Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVAVELEAGIAWSQIPDDMPLKARMLARQVDRLRIEAGADPDELQ
Ga0070674_1007651211	3300005356	Miscanthus Rhizosphere	MQLEIDALREVSLDAKSTFIKRFGDLVALLRADPGNDAAQDLALAAAAAAVETGPLEVEAGIEWSVIPDDLTLKGRLLARHVEAIRIAAGTEPD
Ga0070710_115425461	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MEAKSTFVKRFGDLVALLRSDPGNDAAQDLALDTSVAAVESEEMVIEAGVEWTVIPDDLTLKGRLLARHVESIRIAAGTGPDELLTLARALSHDSVPVQSSPNIQVQMVQVLSPPPGAPRSP
Ga0070708_1004398002	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LQLTPRERLTLDAKSTFIRRFGDLVALLRADPANDAAQDLALAAAVAAVETEPLEVEAGIEWSAIPDDLTLKGRLLARQVETVRITAGAEPDELLALARALSHDVVPVR
Ga0070662_1008568122	3300005457	Corn Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVAAELEAGIAWSQIPDDMPLKARMLARQVDRLRIEAGADPDELQALARAL
Ga0070698_1003107411	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALAAACVAVETEPVDVEAGLAWSVIPDDLALKSRLLARQVDAVHVAAGAEPHELLALARALSHDTVVIPSCPNVQVRMVEHLVPPPGVPAAPEMGASRGAAAASDPPMP
Ga0070699_1002381253	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDAKSTFIKRFGDLVALLRVDPGADAAQDLALAAAAAAVETEPLEVEAGIEWNVIPDDLTLKGRLLARQVEVVRIAAGAEPDELLALARALSHDLVPIPRS
Ga0070684_1021681702	3300005535	Corn Rhizosphere	MPVAKSRSGMHLAAIPMDPKSTFIKRFGDLVALLRADPGNDAAQELALEAASAAVAYAALRIEAGVEWHVIPDEMTLKARMLARQVDAFSVAAGTSPQELQSFARALAHDVTPIPKL
Ga0070684_1023548631	3300005535	Corn Rhizosphere	VGPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTAPIELEAGIAWSQIPDDMPLKTRMLARQVDR
Ga0070672_1017853411	3300005543	Miscanthus Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVPVELEAGIAWSQIPDDMPLKARMLARQVDRIRIEAGADPDELQALARALAHDVTPLPTTPNITVETVRL
Ga0070704_1016673891	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	LQLTPRERLTLDAKSTFIRRFGDLVALLRADPANDAAQDLALAAAVAAVETEPLEVEAGIEWSAIPDDLTLKGRLL
Ga0058697_102095172	3300005562	Agave	VDATSTFIQRFGDLIASLRVDPGNDAAQDLALTAAAAAVEAEPVTVEAGVEWSVIPDDLTLKGRLLARQVERIRVAAGAEPHELLALARALSHDTVQVASSPNILVEMVQVIAPPPSSPP
Ga0068864_1001681681	3300005618	Switchgrass Rhizosphere	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVDTIRIAAGTGPDELLLLARALSH
Ga0074472_100440002	3300005833	Sediment (Intertidal)	VDSKSAFIKRFGDLVVLLRVDPGNDAAQDLALAAAASAVESEPVEVEAGIEWSVIPDELTLKGRLLARQVELVRIAAGAEPDELLALARALSHDLVPIPSSPHIEVEMV
Ga0068862_1001482001	3300005844	Switchgrass Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAATAVRTVAVELEAGIAWSQIPDDMPLKARMLARQV
Ga0075287_10491361	3300005873	Rice Paddy Soil	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALAAAVAALVAEPVEVEAGVAWNEIPAHMGLKARMLARQVDRLRIEA
Ga0075425_1013578292	3300006854	Populus Rhizosphere	LDPKSTFIKRFGDLVALLRFEPGNDAAQDLALTASIAAVEFEPVEIEASLEWSVVPAEFTLKNRLLAR
Ga0075424_1025866491	3300006904	Populus Rhizosphere	MEAKSTFVKRFGDLVALLRSDPGNDAAQDLALDTSVAAVESEEMVIEAGIEWTVIPDDLTLKGRLLARHVESIRIAAGTGPDELLTLARALSHDSVPVQSSPNIQVQMVQ
Ga0075424_1026569232	3300006904	Populus Rhizosphere	MQLAHDSPRKASVDARSTFLKRFGDLVALLRADPANDAAQDLALSTSTAAVETEPVVLEAGVEWNVLPDDLTLKGRLLARHVETVRIAAGTGPEE
Ga0105251_103135601	3300009011	Switchgrass Rhizosphere	LDLLSPFPAAEDGRVGPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQSASIELEAGIAWSQIPDDMPLKTRMLARQVDRLRIEAGADPDELQALARALAHDVT
Ga0066710_1038808881	3300009012	Grasslands Soil	VDLKSTFVKRFGDLVALLRVDPGNDAAQDLALTAAAAAVAENPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPSELLALARALAHDVTPIPS
Ga0075418_112241912	3300009100	Populus Rhizosphere	VDSRSTFVKRFGDLIALLRVDPGNDAAQDLALTAAAAAVESDPVEVEAGVEWSVIPDDLTLKGRLLARRVEAIRIAAGA
Ga0066709_1018695811	3300009137	Grasslands Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEYPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPGELLALARALAHDVTPIPSTPDIEVKL
Ga0075423_103431171	3300009162	Populus Rhizosphere	MQLAHDSPRKASVDARSTFLKRFGDLVALLRADPANDAAQDLALSTSAAAVETEPVVLEAGVEWNVLPDDLTLKGRLLARHVETVRIAAGTGPEELLTLARALSHDTVP
Ga0075423_119507042	3300009162	Populus Rhizosphere	VDPKSAFIKRFGDLVAMLRVDPGNDAAQDLALTAACAAVAGTPLEIEAGLELSEAPPELSLKGRLLSRQVDCI
Ga0126312_109025452	3300010041	Serpentine Soil	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACAAVEAEPVDVEAGIAWSVIPDDLSLKGRLLLRQVEAVHVAVGA
Ga0126382_110974441	3300010047	Tropical Forest Soil	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQSASIELEAGIAWAQIPDDMPLKARMLARQVDRIRIEAGADPDELQALARALAHDVTPLPTTPNITVELVRLLAPPEPSRPGPTA
Ga0134125_126648432	3300010371	Terrestrial Soil	VDPKSTFIKRFGDLIALLRVDPGNDAAQDLALSAAVAAVEAEPVEVEAGVEWSVIPEELTLKGRLLARQVEVIRIAAGAGSQELLALA
Ga0134126_116792871	3300010396	Terrestrial Soil	VDSKSTFVKRFGDLVALLRVDPANDAAQDLALTAACAAVETESVDVEAGLAWSVIPDDLTLKGRLLARQVEAVHVAAGAEHHELLALARALSHDTVIIPSCPNVQVRMVEHLVPPPGVPAAPEMGASRGAAAASEP
Ga0136622_103410841	3300012187	Polar Desert Sand	VDLTSTFIKRFGDLVALLRVDPANDAAQDLALTAAAAAVEHAPVEVDARPERCVPHELSLQARMLARQVDRLRISAGAEPQELLALARALAHDITPVTARPFIEIHQGRAA
Ga0137380_112441852	3300012206	Vadose Zone Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPGELLALARALAHDV
Ga0150985_1187273051	3300012212	Avena Fatua Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAARTAPIELEAGIAWHQIPEDMPLKGRMLARQVDRIRIEAGADPDELQALARALAHDVTPLPVAPNIAVELVRLLAPPEPTGPASPNPGGGTQDSTPDRRL
Ga0137369_100787173	3300012355	Vadose Zone Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAA
Ga0137375_101190083	3300012360	Vadose Zone Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPI
Ga0150984_1130232472	3300012469	Avena Fatua Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALAAAASAVQTGPIELEAGIAWTQIPDDMPLKARMLARQVDRLRIEAGADPDELHALARALAHDVTPLPITPNVTIELVRL
Ga0157216_101448672	3300012668	Glacier Forefield Soil	VDPTSAFVKRFGDLIALLRFDPANDAAQDLALTAAAAAVELDGLEIEAGVQWSVIPDELT
Ga0137397_110001381	3300012685	Vadose Zone Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPGELLALARALAHDVTPIPSTHDIEVKLIPPAAQPPSGGSNGEGRGPSAERSRAPQARSGER
Ga0137404_116210671	3300012929	Vadose Zone Soil	VDAKSTFVKRFGDLVALLRVDPGNDAAQDLALAAAAAAVETEPLEVEAGIEWNVIPDDLTLKGRLLARQVEVVRIAAGAEPDELLALARALSHDLVPIPRSSPHIEVELVQVLVPPPACPAGRA
Ga0137407_114064931	3300012930	Vadose Zone Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWNAIPDDMTLKGRLLARSVDHVRIAAGADPSELLALARALAHDVTPLPSTPNVQVELI
Ga0164298_101594732	3300012955	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAVEGEPVLIEAGVEWSVIPDDL
Ga0164298_104125551	3300012955	Soil	MQLEIDAPREVSVDAKSTFIKRFGDLVALLRADPGNDAAQDLALAAAAAAVETGPLEVEAGIEWSVIPDDLTLKGRLLARHVEAIRIAAGTEPDELLAL
Ga0164303_103501601	3300012957	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSTAAVETEPVVLEAGVEWSVIPDDHTLKGRMLARHVETVRIAAGTGPEELLTLARALSHDTVPVHSSANIQVEMVELLTPPPDPSPFKP
Ga0164303_109936542	3300012957	Soil	VGPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQSASIELEAGIAWSQIPDDMPLKARMLARQVDRI
Ga0164309_118599321	3300012984	Soil	VDARSTFLKRFGDLVALLRADPGNDAAQDLALATSAAAIESEPVVIEAGVEWTVIPDDLTLKGRLLAR
Ga0164308_122271431	3300012985	Soil	LDLLSPFPAAEDGRVGPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQSASIELEAGIAWSQIPDDMPLKARMLARQVDRIRIEAGADPDELQALARALAHDVTPLPTTPNITVETVRLL
Ga0164304_118212361	3300012986	Soil	MQLEIDAPREVSVDAKSTFIKRFGDLVALLRADPGNDAAQDLALAAAAAAVETGPLEVEAGIEWSVIPDDLTLKGRLLARHVEAIRIAAGTEPDELLALARALSHDAVPVRSSPNIQVEM
Ga0164307_106113841	3300012987	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAVEGEPVLIEAGVEWSVIPDDLTLKGRLLARQVETIRIAAGTAPDELLLLARALSH
Ga0164306_114693571	3300012988	Soil	LEAKSTFVRRFGDLVALLRADPGNDAAQDLALATSVAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVETIRIAAGTGPDELLLLARALSHDAVPMRSSPNIQVEMV
Ga0164305_103550162	3300012989	Soil	MEAKSTFVKRFGDLVALLRSDPGNDAAQDLALDTSVAAVESEEMVIEAGVEWTVIPDDLTLKGRLLARHVESIRIAAGTGPDELLTLARALSHDSVPVQSSPNIQVQMVQVL
Ga0075322_10397881	3300014311	Natural And Restored Wetlands	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVPVELEAGIAWSQIPDDMPLKARML
Ga0075316_11819271	3300014314	Natural And Restored Wetlands	LDSKSAFVKRFGDLVALLRADPGNDAAQDLALAAAAGAVEAEPVEVEAGIQWSVIPDELTLKGRLLARQ
Ga0075316_12199692	3300014314	Natural And Restored Wetlands	VDSKSAFIKRFGDLIALLRADPGNDAAQDLALAAATAAVEAEAVEVEAGVQWSVIPDELTLKGRLLARQVEVLRVAAGAESEELLLLARALSHDLTPI
Ga0163163_125352541	3300014325	Switchgrass Rhizosphere	VDSKSTFVKRFGDLVALLRVDPANDAAQDLALSAACAAVEAEPVDVEAGLAWSVIPDDLALKGRLLARQVEAVHVAAGAESHELLALARALSHDTVVIPSCPNVQVRMVEHLVPPPGVTVTPEVSGDR
Ga0132258_127439023	3300015371	Arabidopsis Rhizosphere	MQLEIDAPREVSVDAKSTFIKRFGDLVALLRADPGNDAAQDLALAAAAAAVETGPLEVEAGIEWSVIPDDLTLKGRLLAR
Ga0132258_139747002	3300015371	Arabidopsis Rhizosphere	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAIETESVVIEAGVEWSVIPDDLTLKGRLLARQVDTIRIAAGTGPDELLLLARALSHDTAPVCSSPNIQVELVQFLTPPPGAPE
Ga0184608_100759981	3300018028	Groundwater Sediment	VDSKSAFVKRFGDLVILLRVDPGNDAAQDLALSAACAAVEAEPVDVEAGLAWSVIPDDLTLKGRLLARQVEAVHVAAGAEPHELLALARALSHDTVLIPSCPNVQ
Ga0184615_102271591	3300018059	Groundwater Sediment	VDAKSTFVKRFGDLVALLRVDPGNDAAQDLALTAACAAVEAEPVDVEAGLAWSVIPDDLALKGRL
Ga0190272_108642802	3300018429	Soil	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACHAIEAEPVDVEAGVAWSVIPDDLALKGRLLARQVEAVHVAAGAEPHELLALARALSHDTVVIPSCPNVQVRMVEHLVPPPGLPAVPEAGVDRGAPTS
Ga0190270_115889042	3300018469	Soil	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACHAIEAEPVDVEAGVAWSVIPDDLALKGRLLARQVEAVHGAAGAGPHELL
Ga0190264_117490642	3300019377	Soil	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACAAVEAEPVDVEAGLAWSVIPDDLALKGRLLAR
Ga0193743_11107791	3300019889	Soil	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACHAIEAEPVDVEAGVAWSVIPDDLALKSR
Ga0222622_110617992	3300022756	Groundwater Sediment	VDSKSAFVKRFGDLVALLRVDPANDAAQDLALSAACHAIEAEPVDVEAGVAWSVIPDDLALKSRLLARQVEAVHVAAGAEPHELLALARALSHDTVAIPSCPNVQVQMVEHLVPPPGV
Ga0247792_10888931	3300022880	Soil	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVAAELEAGIAWSQIPDDMPLK
Ga0210076_10573121	3300025567	Natural And Restored Wetlands	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAATAVQTVAVELEAGIAWSQIPDDMPLKARMLARQVDRLRIEAGADPDELQALARALAHDVTPLPVTPNIIVELVRLLAPPE
Ga0207660_105030922	3300025917	Corn Rhizosphere	VDSKSTFVKRFGDLVALLRVDPANDAAQDLALTAACAAVEAESVDVEAGLAWSVIPDDLTLKGRLLARQVEAVHVAAGAEHHELLALARALSHDTVIIPSCPNVQVRMVEYLVPPPGVPAAPQDRGA
Ga0207649_108456092	3300025920	Corn Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAATAVQTVAVELEAGIAWSRIPDDMPLKARMLARQVDRLRIEAGA
Ga0207646_108041531	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LQLTPRERLTLDAKSTFIRRFGDLVALLRADPANDAAQDLALAAAVAAVETEPLEVEAGIEWSAIPDDLTLKGRLLARQVETVRITAGAEPDELLALARALSHDVVPV
Ga0207679_110496991	3300025945	Corn Rhizosphere	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVETIRIAAGTGADELLLLARALSHDT
Ga0207640_116587061	3300025981	Corn Rhizosphere	LDSRSSFIQRFGDLIALLRADPGNDAAQDLALAAATGAVAAQAVEVEAGIHWSVIPEDLTLKGRLLARQVDV
Ga0208141_10070571	3300025988	Rice Paddy Soil	VDPKSIFIKRFGDLVALLRFDPGNDAAQDLALTASAAAVAGEPLEVEAGAEWSSVPAESTLKSRLLARHVDRLRIAAGAEPHDLLAVA
Ga0208775_10113181	3300025992	Rice Paddy Soil	VDPKSIFIKRFGDLVALLRFDPGNDAAQDLALTASAAAVAGEPLEVEAGAEWSSVPAESTLKSRLLARHVDRLRIAAGAEPHDLLA
Ga0208415_10167771	3300025993	Rice Paddy Soil	VDPKSTFIKRFGDLVALLRFDPGNDAAQDLALTASAAAVAGEPLEVEAGAEWSSVPAESTLKSRLLARHVDRLRIAAGAEPHDLLAVA
Ga0208422_10207351	3300026053	Natural And Restored Wetlands	MKIGSHPHLSSEEGGVDPSATFIKRFGDLVMLLRVDPGNDAAQDLALSAAAAAVGDVAVEVEAGIEWGQIPDDMGLKARMLARQVDRLRIEAGGRL
Ga0207641_105432731	3300026088	Switchgrass Rhizosphere	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAVEAEPVVIEAGLQWSVIPDDLTLKGRLLARQVETIRIAAGTGADELLLLARALSHDTVP
Ga0207641_113478751	3300026088	Switchgrass Rhizosphere	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACAAVEAEPVDVEAGLAWSVIPDDLALKGRL
Ga0207698_117611351	3300026142	Corn Rhizosphere	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSVAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVDTIRIAAGTGPDELLLLARALSHDS
Ga0209590_105469321	3300027882	Vadose Zone Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALSAAAAAVAEHPLEVEAGVEWNVIPDDLTLKGRLLARSVDCVRIAAGADLGELLALARALAHDVTPLPSTPNVQVEL
Ga0268265_107801401	3300028380	Switchgrass Rhizosphere	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVAAELEAGIAWSQIPDDMPLKARMLARQVDRLRIEA
Ga0268265_114664081	3300028380	Switchgrass Rhizosphere	VDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACHAIETEPVDVEAGVAWSTIPDDLALKGRLLARQVEAVHVA
Ga0247822_103402532	3300028592	Soil	VDPTASFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVPVELEAGIAWSQIPDDMPLKARMLARQVDRLRIEAGADPDELQALARALAHDVTPLPVTPNITVELVRLLAPPETPPP
Ga0247821_102096412	3300028596	Soil	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAATAVRTVAVELEAGIAWSQIPDDMPLKARMLARQVDRLRIEAGADPDELQALARALAHDVTPLP
Ga0247821_103249391	3300028596	Soil	VDSKSAFVKRFGDLVLLLRVDPGNDAAQDLALAAACAAVEAEPVDVEAGIAWSTIPDELALKQRLLARQVEAV
Ga0307301_103258211	3300028719	Soil	VDSKSAFVKRVGDLVILLRVDPGNDAAQDLALSAACAAVEAEPVDVEAGLAWSVIPDDLALKDRLLARQVETVRVAAGAEPHELLALARALSHDTVVIPSCPNVQVRMVEHLVPPPGVTVTPEVSGDRDASAAADPPVPRGA
Ga0307290_102059231	3300028791	Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPGELLALARALAHDVTPIPSTPDIEVKLIPPGA
Ga0307504_104797611	3300028792	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVETI
Ga0307281_100361451	3300028803	Soil	VDAKSAFVKRFGDLVALLRVDPGNDAAQDLALTAACAAVEAEPVDIEAGLAWTVIPDDLALKSRLLARQVEAVHVVAGAEPHELLALARALSHDTVVIPSCPNVRVQMVEHLVPPPGVPAAPEAGAD
Ga0307292_102878991	3300028811	Soil	VDLKSTFVKRFGDLVALLRSDPGNDAAQDLALTAAAAAVAEHPVEVEAGVEWSVIPDELTLKGRLLARSVDQVRIAAGAEPHELLALARALSHDLTPLPSTPNVQVDLIPLAAESPSLEDARPER
Ga0307296_106344132	3300028819	Soil	VDSKSAFVKRFGDLVILLRVDPGNDAAQDLALSAACAAVEAEPVDVEAGLAWSVIPDDLALKGRLLARQVETV
Ga0307296_108299531	3300028819	Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPCELLALARALAHDVTPIPSTPDIEVKLIPPGAQPPSGGSNGE
Ga0307312_105581452	3300028828	Soil	VDPKSAFVKRFGDLVALLRVDPGNDAAQDLALAAACVAVEAEPVDVEAGLAWSVIPDDLALKSRLLARQVEAVHVAAGAEPHELLALARALSH
Ga0247827_101508002	3300028889	Soil	VDSKSAFVKRFGDLVLLLRVDPGNDAAQDLALAAACAAVEAEPVDVEAGIAWSTIPDELALKQRLLARQVEAVHVVAGAEDHELLALARALSHDTVP
Ga0247826_116991601	3300030336	Soil	VDPTASFIKRFGDLVTLLRVDPGNDAAQDLALSAAAAAVQTVPVELEAGIAWSQIPDDMPLKARMLARQVDPQAIDLT
Ga0308199_11026291	3300031094	Soil	VDLKSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPLEVEAGVEWSVIPDDLTLKGRLLARSVDHVRIAAGAEPGELLALARALAHDVTPIPSTPDIEVKLIPPAAQPPSGGS
(restricted) Ga0255310_102236311	3300031197	Sandy Soil	VDPTSTFVKRFGDLVALLRVDPPNDAAQDLALTAACAAVESEPVEVEAGIEWSTIPDDLTLKGRLLARQVESVRVAAG
(restricted) Ga0255312_10350272	3300031248	Sandy Soil	VDSKSTFIKRFGDLIALLRVDPGNDAAQDLALTAAAAAVESEPLEVEAGIEWSVIPDELTLKGRLLARQVDVVRIAAGAEPHELLALARALSHDLVPIPSTPHIEVEMVQLLAPPPGSPSGSPSGG
(restricted) Ga0255312_10824292	3300031248	Sandy Soil	VDSKSTFVKRFGDLVALLRVDPANDAAQDLALTAACAAVETEPVDVEAGIAWSVIPDDLALKSRLLARQVEAVHVAAGAEPHE
Ga0310887_107322881	3300031547	Soil	MQLALDSPRKASVDARSTFLKRFGDLVALLRADPGNDAAQDLALATSTAAVETEPVVLEAGVEWSVIPDDLTLKGRLLARHVETVRIAAGTGPEELLTLARALSHDTVPVHSSANIQVEMVELLTPPPDPSPF
Ga0310813_117727321	3300031716	Soil	VDLTSTFVKRFGDLVALLRADPGNDAAQDLALTAAAAAVAEHPVEVEAGVEWSVIPDELTLKGRLLARSVDHLRISAGAEPHELLALARALAHDLTP
Ga0307405_116919881	3300031731	Rhizosphere	LDSSSAFVKRFGDLIALLRADPGNDAAQDLALAAAAAAVESEPVEIEAGIHWSVIPDDLTLKGRLLARQVEVVRVGAGAEPDELLALARALSHDLTPIPSS
Ga0307468_1025664762	3300031740	Hardwood Forest Soil	MDPKSTFIKRFGDLVALLRADPGNDAAQELALSAAAAAVAGAPLRIEAGVEWHVIPDEMTLKARMLARQVEAFSVAAGTSPQELQSFA
Ga0307410_120398781	3300031852	Rhizosphere	LPRSPHPSSRGRRVDSKSAFVKRFGDLVALLRVDPGNDAAQDLALSAACAAVEAEPVDIEAGIAWSVIPDDLTLKGRLLVRQVEAVHVAVGAEPQELLALARALSHDTVAIPSCPNVRVQMVEHLVPP
Ga0307412_105228202	3300031911	Rhizosphere	VDAKSTFVKRFGDLVTLYRVDPGNDAAQELALDAAAAAVADGPVEIEAGIEWSAIPGDMGLKARMLARQV
Ga0310897_105553542	3300032003	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAVEAEPVVIEAGLQWSVIPDDLTLKGRLLARQVETIRIAAGTGPDELLL
Ga0310902_107720341	3300032012	Soil	VDPTATFIKRFGDLVTLLRVDPGNDAAQDLALSAAATAVQTVAVELEAGIAWSRIPDDMPLKARMLARQVDRLRIEAGADPAELQALARALAHDVTPLPVTPNIIVE
Ga0315910_116484612	3300032144	Soil	MHLAAISMDQKSTFIKRFGDLVALLRADPGNDAAQELALSAAAAAVADAPLRVEAGVEWHLIPDEMTLKA
Ga0334722_103306081	3300033233	Sediment	MDHKSTFIKRFGDLVALLRFDPANDAAQDLALAASLAAVEHEPVEVEAGAEWSVAPAEFTLKSRL
Ga0310811_100783571	3300033475	Soil	LEAKSTFVKRFGDLVALLRADPGNDAAQDLALATSAAAIETEPVVIEAGVEWSVIPDDLTLKGRLLARQVDTIRIAAGTGPDELLLL
Ga0316628_1034077021	3300033513	Soil	VDRKSTFIKRFGDLIALLRADPGNDAAQDLALAASVAAVESEPLEVEAGIAWNVIPDELTLKGRLLARQVEVVRIAAGAEPHELLALARALSHDLTPLPSSLHVEVE
Ga0247829_104882701	3300033550	Soil	VDSKSAFVKRFGDLVLLLRVDPGNDAAQDLALAAACAAVEAEPVDVEAGIAWSTIPDELALKQRLLARQVEAVHVVAGAEDHELLALARALSHDTVPI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters