Metagenome / Metatranscriptome Family F068503

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068503
Family Type	Metagenome / Metatranscriptome
Number of Sequences	124
Average Sequence Length	45 residues
Representative Sequence	VDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Number of Associated Samples	105
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.87 %
% of genes near scaffold ends (potentially truncated)	89.52 %
% of genes from short scaffolds (< 2000 bps)	95.97 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.548 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.419 % of family members)
Environment Ontology (ENVO)	Unclassified (26.613 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.677 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.17% β-sheet: 16.67% Coil/Unstructured: 79.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF07859	Abhydrolase_3	8.87
PF01068	DNA_ligase_A_M	7.26
PF02668	TauD	5.65
PF04909	Amidohydro_2	2.42
PF13185	GAF_2	0.81
PF00536	SAM_1	0.81
PF03466	LysR_substrate	0.81
PF00920	ILVD_EDD	0.81
PF10686	YAcAr	0.81
PF00743	FMO-like	0.81
PF10009	DUF2252	0.81
PF13649	Methyltransf_25	0.81
PF04679	DNA_ligase_A_C	0.81
PF05719	GPP34	0.81
PF13751	DDE_Tnp_1_6	0.81
PF13738	Pyr_redox_3	0.81
PF08402	TOBE_2	0.81
PF00296	Bac_luciferase	0.81
PF01565	FAD_binding_4	0.81
PF13431	TPR_17	0.81
PF13006	Nterm_IS4	0.81
PF09084	NMT1	0.81
PF00903	Glyoxalase	0.81
PF05598	DUF772	0.81
PF00682	HMGL-like	0.81
PF04392	ABC_sub_bind	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	8.87
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	8.06
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	7.26
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.65
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.61
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.81
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.81
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.81
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.81
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.55 %
Unclassified	root	N/A	31.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.55 %
Unclassified	root	N/A	31.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.55 %
Unclassified	root	N/A	31.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.90 %
Unclassified	root	N/A	31.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.39 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.42 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.61 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.45 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.29 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.03 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2.42 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.81 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.81 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.81 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Thiotrichaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae	0.81 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.81 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.81 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.81 %
unclassified Alcaligenaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae	0.81 %
Thiothrix	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix	0.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.81 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.81 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.81 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	0.81 %
Bradyrhizobium cenepequi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cenepequi	0.81 %
Alcaligenaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	0.81 %
Thiothrix nivea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix → Thiothrix nivea	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.29 %
Thiothrix nivea DSM 5205	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix → Thiothrix nivea → Thiothrix nivea DSM 5205	0.81 %
Pseudomonas sp. 32_A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. 32_A	0.81 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	0.81 %
Bradyrhizobium cenepequi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cenepequi	0.81 %
Alcaligenaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	0.81 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.81 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.81 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.81 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10588200	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300001661\|JGI12053J15887_10288590	Not Available	805	Open in IMG/M
3300001867\|JGI12627J18819_10004790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5106	Open in IMG/M
3300001867\|JGI12627J18819_10500303	Not Available	500	Open in IMG/M
3300002245\|JGIcombinedJ26739_101324629	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300003505\|JGIcombinedJ51221_10092101	All Organisms → cellular organisms → Bacteria → Proteobacteria	1199	Open in IMG/M
3300004080\|Ga0062385_10301141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Thiotrichaceae → Thiothrix → Thiothrix nivea → Thiothrix nivea DSM 5205	919	Open in IMG/M
3300004082\|Ga0062384_101089574	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300004091\|Ga0062387_101215270	Not Available	591	Open in IMG/M
3300004091\|Ga0062387_101276290	Not Available	579	Open in IMG/M
3300005166\|Ga0066674_10303664	Not Available	750	Open in IMG/M
3300005367\|Ga0070667_100919173	Not Available	815	Open in IMG/M
3300005531\|Ga0070738_10398549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300005538\|Ga0070731_11061423	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005607\|Ga0070740_10154676	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300006954\|Ga0079219_10223878	Not Available	1091	Open in IMG/M
3300009143\|Ga0099792_11084594	Not Available	539	Open in IMG/M
3300009698\|Ga0116216_10733315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300009698\|Ga0116216_10911128	Not Available	526	Open in IMG/M
3300010039\|Ga0126309_10633037	Not Available	678	Open in IMG/M
3300010045\|Ga0126311_10558970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	902	Open in IMG/M
3300010341\|Ga0074045_10845207	Not Available	578	Open in IMG/M
3300010360\|Ga0126372_10959495	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	863	Open in IMG/M
3300010360\|Ga0126372_12659341	Not Available	552	Open in IMG/M
3300010366\|Ga0126379_13197819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	548	Open in IMG/M
3300010376\|Ga0126381_100912810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1265	Open in IMG/M
3300010376\|Ga0126381_102115993	All Organisms → cellular organisms → Bacteria → Proteobacteria	810	Open in IMG/M
3300010376\|Ga0126381_104557643	Not Available	534	Open in IMG/M
3300010379\|Ga0136449_102254943	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300010396\|Ga0134126_10790986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1073	Open in IMG/M
3300010400\|Ga0134122_10761723	Not Available	918	Open in IMG/M
3300012203\|Ga0137399_11101313	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300012205\|Ga0137362_11665759	Not Available	525	Open in IMG/M
3300012212\|Ga0150985_101323127	Not Available	594	Open in IMG/M
3300012212\|Ga0150985_104328451	Not Available	727	Open in IMG/M
3300012212\|Ga0150985_116148858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300012212\|Ga0150985_118980064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. 32_A	626	Open in IMG/M
3300012350\|Ga0137372_10850165	Not Available	652	Open in IMG/M
3300012357\|Ga0137384_11554282	Not Available	511	Open in IMG/M
3300012907\|Ga0157283_10071255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	858	Open in IMG/M
3300012922\|Ga0137394_10516049	All Organisms → cellular organisms → Bacteria → Proteobacteria	1014	Open in IMG/M
3300012957\|Ga0164303_10496186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	780	Open in IMG/M
3300012961\|Ga0164302_11352859	Not Available	578	Open in IMG/M
3300012989\|Ga0164305_10471484	All Organisms → cellular organisms → Bacteria → Proteobacteria	980	Open in IMG/M
3300014325\|Ga0163163_11389350	Not Available	764	Open in IMG/M
3300015371\|Ga0132258_11501112	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300016294\|Ga0182041_10553425	All Organisms → cellular organisms → Bacteria → Proteobacteria	1005	Open in IMG/M
3300016294\|Ga0182041_11117697	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300016341\|Ga0182035_11836907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300016357\|Ga0182032_10934688	Not Available	738	Open in IMG/M
3300016371\|Ga0182034_10104359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2039	Open in IMG/M
3300016371\|Ga0182034_10641736	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300016371\|Ga0182034_11493731	Not Available	592	Open in IMG/M
3300016371\|Ga0182034_11583174	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300016445\|Ga0182038_10434035	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300017822\|Ga0187802_10238322	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300017943\|Ga0187819_10446485	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300017973\|Ga0187780_11345578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300017975\|Ga0187782_10438054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	996	Open in IMG/M
3300017995\|Ga0187816_10408738	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300018006\|Ga0187804_10353585	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300020581\|Ga0210399_11144642	Not Available	620	Open in IMG/M
3300020582\|Ga0210395_10122060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1935	Open in IMG/M
3300020583\|Ga0210401_10619641	Not Available	943	Open in IMG/M
3300021168\|Ga0210406_10680753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	794	Open in IMG/M
3300021171\|Ga0210405_11404218	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300021180\|Ga0210396_11165324	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300021404\|Ga0210389_11485625	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300021406\|Ga0210386_10029849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4276	Open in IMG/M
3300021407\|Ga0210383_10585285	Not Available	962	Open in IMG/M
3300021560\|Ga0126371_10289952	All Organisms → cellular organisms → Bacteria → Proteobacteria	1761	Open in IMG/M
3300021560\|Ga0126371_10492478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1374	Open in IMG/M
3300021560\|Ga0126371_12923146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	579	Open in IMG/M
3300022557\|Ga0212123_10368981	All Organisms → cellular organisms → Bacteria → Proteobacteria	974	Open in IMG/M
3300022720\|Ga0242672_1044040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	729	Open in IMG/M
3300022726\|Ga0242654_10137940	Not Available	803	Open in IMG/M
3300025917\|Ga0207660_11439427	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300025929\|Ga0207664_11451921	Not Available	607	Open in IMG/M
3300025930\|Ga0207701_10488282	Not Available	1055	Open in IMG/M
3300025986\|Ga0207658_10903939	Not Available	804	Open in IMG/M
3300026095\|Ga0207676_11160020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	765	Open in IMG/M
3300026340\|Ga0257162_1051266	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300026360\|Ga0257173_1032721	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300026482\|Ga0257172_1070702	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300026555\|Ga0179593_1112931	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300026880\|Ga0209623_1011586	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300027173\|Ga0208097_1002907	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300027376\|Ga0209004_1007990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1513	Open in IMG/M
3300027521\|Ga0209524_1090902	Not Available	641	Open in IMG/M
3300027706\|Ga0209581_1258670	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027905\|Ga0209415_10193305	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300028047\|Ga0209526_10807838	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300030494\|Ga0310037_10239601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300030741\|Ga0265459_12777926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	608	Open in IMG/M
3300031543\|Ga0318516_10536388	Not Available	670	Open in IMG/M
3300031544\|Ga0318534_10182534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1212	Open in IMG/M
3300031545\|Ga0318541_10478673	Not Available	696	Open in IMG/M
3300031546\|Ga0318538_10007038	All Organisms → cellular organisms → Bacteria	4428	Open in IMG/M
3300031546\|Ga0318538_10126079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1340	Open in IMG/M
3300031561\|Ga0318528_10012332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cenepequi	3918	Open in IMG/M
3300031572\|Ga0318515_10369080	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300031744\|Ga0306918_10149689	All Organisms → cellular organisms → Bacteria → Proteobacteria	1722	Open in IMG/M
3300031744\|Ga0306918_10995237	Not Available	651	Open in IMG/M
3300031771\|Ga0318546_11086889	Not Available	562	Open in IMG/M
3300031792\|Ga0318529_10246330	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300031792\|Ga0318529_10396817	Not Available	642	Open in IMG/M
3300031796\|Ga0318576_10618047	Not Available	510	Open in IMG/M
3300031835\|Ga0318517_10362084	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300031859\|Ga0318527_10329603	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300031879\|Ga0306919_11347743	Not Available	539	Open in IMG/M
3300031890\|Ga0306925_11633193	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300031897\|Ga0318520_10536601	Not Available	724	Open in IMG/M
3300031912\|Ga0306921_10413508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1574	Open in IMG/M
3300031962\|Ga0307479_11368022	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300031981\|Ga0318531_10200763	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300032090\|Ga0318518_10680507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300032174\|Ga0307470_11633200	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300032180\|Ga0307471_100524683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1335	Open in IMG/M
3300032205\|Ga0307472_102146239	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300032783\|Ga0335079_11992191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300032892\|Ga0335081_11357931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300033289\|Ga0310914_11779229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300033290\|Ga0318519_10091972	All Organisms → cellular organisms → Bacteria → Proteobacteria	1616	Open in IMG/M
3300033290\|Ga0318519_10958492	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.74%
Host-Associated	Host-Associated	7.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.48%
Aquatic	Environmental → Aquatic	7.26%
Plants	Host-Associated → Plants	7.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.48%
Freshwater	Environmental → Aquatic → Freshwater	6.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.61%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.81%
Roots	Host-Associated → Plants → Roots	0.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.97%
Loam	Environmental → Terrestrial → Soil → Loam	10.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.61%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.81%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.81%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.03%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.03%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.23%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.61%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.81%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.03%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.23%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.23%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.23%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.23%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.23%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.61%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.61%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.61%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.81%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.81%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026880	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_105882001	3300001593	Forest Soil	VDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
JGI12053J15887_102885902	3300001661	Forest Soil	PLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
JGI12627J18819_100047905	3300001867	Forest Soil	ANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
JGI12627J18819_105003031	3300001867	Forest Soil	DGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
JGIcombinedJ26739_1013246292	3300002245	Forest Soil	AVDGGDPLLANSCIFVGPEEPAFAGALGPVGAELLCLQFRRRARD*
JGIcombinedJ51221_100921012	3300003505	Forest Soil	GEPLSANSCIFVGSKEPAFAGASGPVGAELLCLQFRRARD*
Ga0062385_103011411	3300004080	Bog Forest Soil	VDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRHRARD*
Ga0062384_1010895742	3300004082	Bog Forest Soil	GGDPLPANSCSFIGPEEPAFAGASGTVGAELLCLQFRRRAGD*
Ga0062387_1012152702	3300004091	Bog Forest Soil	PLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRHRARD*
Ga0062387_1012762901	3300004091	Bog Forest Soil	AVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0066674_103036641	3300005166	Soil	WLVLAGDAAVDGGDPSPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0070667_1009191732	3300005367	Switchgrass Rhizosphere	AAVDGGDPLPANSCIFVGPEEPAFAGASGRVGAELLCLQFRRRARD*
Ga0070738_103985492	3300005531	Surface Soil	PANSCIFVSPQEPAIAGAAGRDGAELLCLQFRHRAHD*
Ga0070731_110614232	3300005538	Surface Soil	ASSCVFIGPEEPAFAGASGRAGAELLCLQFRRRVRD*
Ga0070740_101546762	3300005607	Surface Soil	GDIVIDGGDPLPANSCIFVGPQEPAFNAHSGRVGAELLCLQFRRRAPR*
Ga0079219_102238781	3300006954	Agricultural Soil	AAVDGGDPLPANSCIFAGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0099792_110845941	3300009143	Vadose Zone Soil	AGDAAVGGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0116216_107333152	3300009698	Peatlands Soil	VLAGDAAVDGGDPLPANSCIFVGPEEPAFAGASGRVGAELLCLQFRRRARD*
Ga0116216_109111282	3300009698	Peatlands Soil	AVDGGNPLPANSCIFVGPEEPAFAGASGRVGVELLCLQFRRRARG*
Ga0126309_106330371	3300010039	Serpentine Soil	VDGGDPLPANSCIFVNPADPAFAGASGPVGAELLCLQFRRRARD*
Ga0126311_105589702	3300010045	Serpentine Soil	VLAGDAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARG*
Ga0074045_108452071	3300010341	Bog Forest Soil	IRFRIFVGPEDPAFAGASGPVGAELLCLQFRRCARD*
Ga0126372_109594952	3300010360	Tropical Forest Soil	SCIFVGPEDPAFAGASGPVGADLLCLQFRRRTRD*
Ga0126372_126593411	3300010360	Tropical Forest Soil	VLAGDAAVDGSHPLPANSCIFVGPEDLAFAGASGPVGAGLLCLQFRRRARD*
Ga0126379_131978191	3300010366	Tropical Forest Soil	VLAGDAAVDGGGPLPANSCIFVAPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0126381_1009128101	3300010376	Tropical Forest Soil	VLAGDAAVDGGDPLPANSCIFVGREDPAFAGASGPVGAELLCLQFRRRARD*
Ga0126381_1021159932	3300010376	Tropical Forest Soil	DPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRCARD*
Ga0126381_1045576432	3300010376	Tropical Forest Soil	DGGDPLPANSCIFVGPEEPAFIGASGPVGAELLCLQFHRRAAA*
Ga0136449_1022549432	3300010379	Peatlands Soil	VLAGDAAVDGGDPLPANSCIFVGPEDPTFAGTSGRVGVELLCLQFRRRARD*
Ga0134126_107909863	3300010396	Terrestrial Soil	AGEAAIDGGDPLPANSCIFVGPQDPALAGASGPVGAELLCLQFRRRARD*
Ga0134122_107617232	3300010400	Terrestrial Soil	SCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0137399_111013132	3300012203	Vadose Zone Soil	AGDAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0137362_116657591	3300012205	Vadose Zone Soil	DAAVDDGDRLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0150985_1013231272	3300012212	Avena Fatua Rhizosphere	VDGGDPLPANSCIFVGPEDPAFTGASGPVGAELLCLQFRRRARD*
Ga0150985_1043284513	3300012212	Avena Fatua Rhizosphere	LPANSCIFVGPEDPAFDGASGPVGAELLCLQFRRRARD*
Ga0150985_1161488582	3300012212	Avena Fatua Rhizosphere	VEGDDPLPANSCIFVGPEDPAFAGASGPVGTELLCLRFRRRARG*
Ga0150985_1189800641	3300012212	Avena Fatua Rhizosphere	LAGDAAVDGGDPLPANSCIFVGPQDPAFAGASGPVGAELLCLQFRRRARD*
Ga0137372_108501651	3300012350	Vadose Zone Soil	LVLTGDAAVNGGDPLPADSCIFVGPEDPAFAGTSGPVGAELLCLQFRRRARD*
Ga0137384_115542821	3300012357	Vadose Zone Soil	AVDGGDPLPANSCIFVSPEDPAFAGASGPVGAELLCLQFRRRTRD*
Ga0157283_100712552	3300012907	Soil	GGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0137394_105160492	3300012922	Vadose Zone Soil	GGGQFLLVLAGNAAVDGGDPLPANSCIFIGPEDPAFAGASGPVGAELLCLQFRRRTRD*
Ga0164303_104961862	3300012957	Soil	MLAGDAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0164302_113528593	3300012961	Soil	GDAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD*
Ga0164305_104714842	3300012989	Soil	GDPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRRARA*
Ga0163163_113893501	3300014325	Switchgrass Rhizosphere	LHRDCRGAPSAGGDPLPANSCIFVGPQDPAFAGASGPVGAELLGLQFRRCARD*
Ga0132258_115011121	3300015371	Arabidopsis Rhizosphere	NALPANSCIFVGPEDPAFAGASGPAGAELLCLQFRRARA*
Ga0182041_105534252	3300016294	Soil	GDAAVDGGDPLPANSCIFVGSKEPAFAGASGPVGAELLCLQFRLHAGLNPAR
Ga0182041_111176972	3300016294	Soil	EGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0182035_118369072	3300016341	Soil	LPANSCIFVGPEEPALAGASGRVGVELVCLQFRRGARD
Ga0182032_109346881	3300016357	Soil	GDAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGGELLCLQFRRRAPD
Ga0182034_101043592	3300016371	Soil	VLAGDAAVDGGDPLPANSCIFVVPEDSAFAGASGPVGGELLCLQFRRRAPD
Ga0182034_106417363	3300016371	Soil	LPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRAQE
Ga0182034_114937312	3300016371	Soil	GDTAVNGGGPLPANSCIFVGPEDPTFAGTSGPVGAELLCLQFRRCARD
Ga0182034_115831741	3300016371	Soil	GDAAVDGGDLLPANSCILIGPEELAFAGASGRVGAELVCLQFRRRARD
Ga0182038_104340352	3300016445	Soil	GGDPLPANSCIFVGPEDPAFAGASGPVGGELLCLQFRRRAPD
Ga0187802_102383222	3300017822	Freshwater Sediment	VLAGDAVVDGGDLLPANSCIFVDPEDPAFAGTSGRVGAELLCLQFRRRARD
Ga0187819_104464851	3300017943	Freshwater Sediment	AAVDGGDPLPANSCIFVGSKEPAFAGASGPVGAELLCLQFRRARD
Ga0187780_113455781	3300017973	Tropical Peatland	LVLAGDAAVDGGDPLPANSCIFVGPEDSAFAGASGPAGAELLCLQFRRRARD
Ga0187782_104380542	3300017975	Tropical Peatland	VLAGDAAVDGGDPLPANSCIFVGSKEPAFAGASGPVGAELLCLQFRRRARD
Ga0187816_104087382	3300017995	Freshwater Sediment	PANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0187804_103535851	3300018006	Freshwater Sediment	DPLPANSCIFVGPEDPAFAGTSGRVGVELLCLQFRRRAWD
Ga0210399_111446421	3300020581	Soil	RTHARFVGPEEPAFAGALGPVGAELLCLQFRRRARD
Ga0210395_101220601	3300020582	Soil	PLPANSCIFVGSTEPAFAGASGPVGAELLCLQFRRAGLNPAR
Ga0210401_106196411	3300020583	Soil	DTAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRHRARD
Ga0210406_106807531	3300021168	Soil	AAVDGGDPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRRARD
Ga0210405_114042182	3300021171	Soil	ANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0210396_111653241	3300021180	Soil	AVDGGDPLPANSCIFVGSTEPAFAGASGPVGAELLCLQFRRAGLNPAR
Ga0210389_114856252	3300021404	Soil	PLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0210386_100298491	3300021406	Soil	DGDDPLPANSCIFVGPEEPAFAGTSGRAGAELLCLQLRCRARD
Ga0210383_105852853	3300021407	Soil	VLAGDTAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRHRARD
Ga0126371_102899521	3300021560	Tropical Forest Soil	DGGDRLPANSCIFVCPEEPAFAGASGRVGAELLCLQFRRRARD
Ga0126371_104924783	3300021560	Tropical Forest Soil	VLAGGAAVDGGDPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRRARD
Ga0126371_129231462	3300021560	Tropical Forest Soil	DGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRARD
Ga0212123_103689812	3300022557	Iron-Sulfur Acid Spring	AVDGGDPLPANSCIFVGPEDPAFAGASGPAGAELLCLQFRRRSRD
Ga0242672_10440401	3300022720	Soil	VLAGDAAVDGGDPLPANSCIFVGPEDPAFAGVSGPVGAELLCLQFRRRARD
Ga0242654_101379401	3300022726	Soil	AAVDGGDPLPANSCIFVGPEDPAFVGASGPVGAELLCLQFRRRARD
Ga0207660_114394271	3300025917	Corn Rhizosphere	GDLLPANSCIFVGPEEPPFAGASGPVGAELLCLQFRRRARD
Ga0207664_114519211	3300025929	Agricultural Soil	AGDTAVDGGDPLLTNSCIFVGPEDPAFAGASGPVGAELLCLQFRHRARD
Ga0207701_104882821	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	PLPANSCIFVGPEEPAFTGASGPVGAELLCLQFRRGPRD
Ga0207658_109039392	3300025986	Switchgrass Rhizosphere	GGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0207676_111600201	3300026095	Switchgrass Rhizosphere	VAVDGGNPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRRARD
Ga0257162_10512661	3300026340	Soil	AAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0257173_10327211	3300026360	Soil	NSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0257172_10707021	3300026482	Soil	LPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0179593_11129311	3300026555	Vadose Zone Soil	GDPLPANSCIFVGPEDPAIAGASGPVGAELLCLQFRRRARD
Ga0209623_10115861	3300026880	Forest Soil	LVLAGDAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRTRD
Ga0208097_10029071	3300027173	Forest Soil	TRPRSETRVSAAVDGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0209004_10079901	3300027376	Forest Soil	GDAAVDGGDPLLANFCIFVGPEEPAFAGALGPVGAELLCLQFRRRARD
Ga0209524_10909022	3300027521	Forest Soil	ANSCIFVGPEEPAFAGALGPVGAELLCLQFRRRARD
Ga0209581_12586702	3300027706	Surface Soil	GDIVIDGGDPLPANSCIFVGPQEPAFNAHSGRVGAELLCLQFRRRAPR
Ga0209415_101933051	3300027905	Peatlands Soil	LAGDAAVDGGDPLPANSCIFVGPEEPAFAGVSGRFGAELLCLQFRRRAHGDGAGRAPNQ
Ga0209526_108078381	3300028047	Forest Soil	DGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0310037_102396011	3300030494	Peatlands Soil	VLAGDAAVDGGDPLPANSCIFVGPEEPAFAGASGRVGAELLCLQFRRRARD
Ga0265459_127779262	3300030741	Soil	LVLAGDAALDGGDPLPANSRIFVGPEEPAFAVASGRVGAELLCLQFRRRARD
Ga0318516_105363881	3300031543	Soil	DGGDPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRCARD
Ga0318534_101825341	3300031544	Soil	GDAAVDGGDPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRCARD
Ga0318541_104786731	3300031545	Soil	LPANSCIFVGPEEPAFAGASGLVGAELLCLQFRRRARD
Ga0318538_100070385	3300031546	Soil	VEGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRAQE
Ga0318538_101260793	3300031546	Soil	VLAGDAAVDSGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRS
Ga0318528_100123321	3300031561	Soil	GDAAVEGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRAQE
Ga0318515_103690801	3300031572	Soil	VLTGDAAVEGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0306918_101496891	3300031744	Soil	AAVDGDDPLPANSCIFVGSKEPAFAGASGPVGAELLCLQFRLHAGLNPAR
Ga0306918_109952371	3300031744	Soil	GDAAVDGGDPLPANSCIFVVPEDSAFAGASGPVGAELLCLQFRRRARG
Ga0318546_110868891	3300031771	Soil	DGGNPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0318529_102463301	3300031792	Soil	DPLPANSCIFVGSKEPAFAGASGPVGAELLCLQFRLHAGLNPAR
Ga0318529_103968171	3300031792	Soil	VDGGNPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0318576_106180472	3300031796	Soil	VDGGDPLPANSCIFVGPEEPAFAGASGPVGAELLCLQFRRCARD
Ga0318517_103620841	3300031835	Soil	AAVDGRDPLPDNSCIFVGSKEPAFAGASGPVGAELLCLQFRLHAGLNPAR
Ga0318527_103296031	3300031859	Soil	VEGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRVRD
Ga0306919_113477431	3300031879	Soil	AVDGGDPLPANSCIFVGPEDPAFAGASGPVGGELLCLQFRRRAPD
Ga0306925_116331931	3300031890	Soil	GQLPANSCIFVGPEEPAFAGASGRVGAELLCLQFRRRARD
Ga0318520_105366011	3300031897	Soil	LVLAGDAAVDGGDPLPANSCIFVGPEEPAFAGASGLVGAELLCLQFRRRARD
Ga0306921_104135084	3300031912	Soil	DPLPANSCIFVGPEEPAFAGASGLVGAELLCLQFRRRARD
Ga0307479_113680222	3300031962	Hardwood Forest Soil	AAVNGGDPLPANSCIFVGPDEPAFAGASGPVGAELLCLQFRRRRTREERATDASA
Ga0318531_102007631	3300031981	Soil	LTGDAAVEGGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRAQE
Ga0318518_106805071	3300032090	Soil	AVDAAVGGGAPLPANSCIFVGPEEPALAGASGRVGVELVCLQFRRGARD
Ga0307470_116332002	3300032174	Hardwood Forest Soil	RSVAANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0307471_1005246833	3300032180	Hardwood Forest Soil	DPLPANSCIFAGPEDPAFAGASGPVGAELLCLQFRHRARD
Ga0307472_1021462392	3300032205	Hardwood Forest Soil	DAAVGCGDPLPANSCIFVGPEDPAFAGASGPVGAELLCLQFRRRARD
Ga0335079_119921911	3300032783	Soil	GDPLPANSCIFVGPQDAAFAGAAGPFGAELLCLQFRRRARD
Ga0335081_113579312	3300032892	Soil	PLPANSCIFVGPQDPAFAGASGPLGAELLCLQFRRGARD
Ga0310914_117792292	3300033289	Soil	NSCIFVGPEEPALAGASGRVGVELVCLQFRRGARD
Ga0318519_100919724	3300033290	Soil	ANSCIFVGPEEPAFAGASGLVGAELLCLQFRRRARD
Ga0318519_109584921	3300033290	Soil	QLPANSCIFVGPEEPAFAGASGRVGAELLCLQFRRRARD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068503

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences