Metagenome / Metatranscriptome Family F068266

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068266
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	56 residues
Representative Sequence	SRFLVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTVGAGDGYLES
Number of Associated Samples	105
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	88.00 %
% of genes from short scaffolds (< 2000 bps)	84.80 %
Associated GOLD sequencing projects	102
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.200 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (29.600 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.600 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.10% β-sheet: 0.00% Coil/Unstructured: 43.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF02899	Phage_int_SAM_1	88.00
PF01743	PolyA_pol	8.80
PF03023	MurJ	0.80
PF00196	GerE	0.80
PF01694	Rhomboid	0.80
PF00691	OmpA	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	88.00
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	88.00
COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	Translation, ribosomal structure and biogenesis [J]	8.80
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	0.80
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	0.80
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.20 %
Unclassified	root	N/A	20.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.20 %
Unclassified	root	N/A	20.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.20 %
Unclassified	root	N/A	20.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	57.60 %
Unclassified	root	N/A	20.80 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	48.80 %
Unclassified	root	N/A	20.80 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.80 %
Unclassified	root	N/A	20.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.80 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.80 %
Unclassified	root	N/A	20.80 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.80 %
Unclassified	root	N/A	20.80 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.80 %
Unclassified	root	N/A	20.80 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10453481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300001593\|JGI12635J15846_10562771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300003220\|JGI26342J46808_1002894	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300003224\|JGI26344J46810_1014444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	642	Open in IMG/M
3300003351\|JGI26346J50198_1008900	All Organisms → cellular organisms → Bacteria → Acidobacteria	965	Open in IMG/M
3300004635\|Ga0062388_102884297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300005167\|Ga0066672_10368392	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300005175\|Ga0066673_10134919	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300005176\|Ga0066679_10047503	All Organisms → cellular organisms → Bacteria	2456	Open in IMG/M
3300005180\|Ga0066685_10632351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300005186\|Ga0066676_10050743	All Organisms → cellular organisms → Bacteria	2356	Open in IMG/M
3300005447\|Ga0066689_10262995	All Organisms → cellular organisms → Bacteria → Acidobacteria	1064	Open in IMG/M
3300005468\|Ga0070707_100753581	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300005556\|Ga0066707_10838711	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300005586\|Ga0066691_10317747	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300005598\|Ga0066706_10816803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300005602\|Ga0070762_11318364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300006034\|Ga0066656_10243553	Not Available	1154	Open in IMG/M
3300006050\|Ga0075028_100372307	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300006050\|Ga0075028_100416160	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300006755\|Ga0079222_12640662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300006794\|Ga0066658_10303991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	852	Open in IMG/M
3300006794\|Ga0066658_10810839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300006804\|Ga0079221_11148131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300007076\|Ga0075435_100220591	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300007265\|Ga0099794_10249279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300009038\|Ga0099829_11515310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300009089\|Ga0099828_10310121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1420	Open in IMG/M
3300009089\|Ga0099828_10969705	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300009089\|Ga0099828_11877704	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300009143\|Ga0099792_10833556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300009520\|Ga0116214_1342222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300009615\|Ga0116103_1011214	All Organisms → cellular organisms → Bacteria → Acidobacteria	3034	Open in IMG/M
3300010322\|Ga0134084_10023774	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300010335\|Ga0134063_10734116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300010337\|Ga0134062_10585808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300010360\|Ga0126372_11105402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300010360\|Ga0126372_11211573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300010360\|Ga0126372_11800047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300010366\|Ga0126379_12637650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300010398\|Ga0126383_10057018	All Organisms → cellular organisms → Bacteria	3287	Open in IMG/M
3300011269\|Ga0137392_10299503	Not Available	1329	Open in IMG/M
3300011271\|Ga0137393_10682707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	880	Open in IMG/M
3300012096\|Ga0137389_10352628	Not Available	1252	Open in IMG/M
3300012189\|Ga0137388_11727495	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300012189\|Ga0137388_11847435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300012203\|Ga0137399_10463429	Not Available	1061	Open in IMG/M
3300012203\|Ga0137399_10977821	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	713	Open in IMG/M
3300012285\|Ga0137370_10310441	All Organisms → cellular organisms → Bacteria → Acidobacteria	943	Open in IMG/M
3300012351\|Ga0137386_11169964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300012359\|Ga0137385_10384619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1198	Open in IMG/M
3300012362\|Ga0137361_11689633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300012363\|Ga0137390_10647545	All Organisms → cellular organisms → Bacteria → Acidobacteria	1022	Open in IMG/M
3300012925\|Ga0137419_11349500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300012930\|Ga0137407_10446762	Not Available	1202	Open in IMG/M
3300012948\|Ga0126375_10147112	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300014154\|Ga0134075_10109222	Not Available	1171	Open in IMG/M
3300015245\|Ga0137409_10660277	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300017656\|Ga0134112_10336988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300017931\|Ga0187877_1000095	All Organisms → cellular organisms → Bacteria → Acidobacteria	114140	Open in IMG/M
3300017994\|Ga0187822_10327901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300018032\|Ga0187788_10050673	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300018060\|Ga0187765_10167782	Not Available	1250	Open in IMG/M
3300018090\|Ga0187770_11033036	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300018468\|Ga0066662_10512729	Not Available	1096	Open in IMG/M
3300020018\|Ga0193721_1021122	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300020170\|Ga0179594_10073463	Not Available	1195	Open in IMG/M
3300020199\|Ga0179592_10070343	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300020199\|Ga0179592_10404225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300020579\|Ga0210407_10261947	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300020579\|Ga0210407_11460115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300020580\|Ga0210403_10775554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300020581\|Ga0210399_10292885	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300020581\|Ga0210399_10603780	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300020582\|Ga0210395_11201427	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300021180\|Ga0210396_10352452	Not Available	1298	Open in IMG/M
3300021181\|Ga0210388_11807402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300021405\|Ga0210387_10542183	Not Available	1034	Open in IMG/M
3300021407\|Ga0210383_10466133	Not Available	1091	Open in IMG/M
3300021559\|Ga0210409_11011867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300022533\|Ga0242662_10055566	All Organisms → cellular organisms → Bacteria → Acidobacteria	1034	Open in IMG/M
3300024219\|Ga0247665_1009425	Not Available	1096	Open in IMG/M
3300025441\|Ga0208456_1052192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300026318\|Ga0209471_1040570	All Organisms → cellular organisms → Bacteria	2213	Open in IMG/M
3300026318\|Ga0209471_1197570	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	768	Open in IMG/M
3300026328\|Ga0209802_1153335	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300026333\|Ga0209158_1248593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300026343\|Ga0209159_1181196	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300026376\|Ga0257167_1044340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300026497\|Ga0257164_1078587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300026532\|Ga0209160_1067530	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300026551\|Ga0209648_10236119	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300026552\|Ga0209577_10576085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	696	Open in IMG/M
3300027381\|Ga0208983_1107703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300027610\|Ga0209528_1075959	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300027643\|Ga0209076_1024510	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300027660\|Ga0209736_1166466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300027855\|Ga0209693_10625483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300027869\|Ga0209579_10644822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300027911\|Ga0209698_10004109	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	16091	Open in IMG/M
3300028563\|Ga0265319_1282327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300028884\|Ga0307308_10021183	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300030759\|Ga0265745_1000703	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300031668\|Ga0318542_10635449	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300031708\|Ga0310686_112273149	Not Available	1147	Open in IMG/M
3300031718\|Ga0307474_10237632	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300031740\|Ga0307468_100206825	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300031740\|Ga0307468_101138738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300031753\|Ga0307477_10270284	Not Available	1176	Open in IMG/M
3300031753\|Ga0307477_10624184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300031754\|Ga0307475_11124978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300031754\|Ga0307475_11586313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300031823\|Ga0307478_10285488	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300031896\|Ga0318551_10290770	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.40%
Host-Associated	Host-Associated	1.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.00%
Aquatic	Environmental → Aquatic	10.40%
Plants	Host-Associated → Plants	1.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.00%
Freshwater	Environmental → Aquatic → Freshwater	6.40%
Sediment	Environmental → Aquatic → Sediment	2.40%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.20%
Loam	Environmental → Terrestrial → Soil → Loam	10.40%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.40%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.60%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.20%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.40%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.60%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.60%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001369	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003220	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1	Environmental	Open in IMG/M
3300003224	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030759	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12701J14581_10158341	3300001369	Forest Soil	LVQLLTFLALLGSATLLYLGTAWLFRCHELEEIYGIATRRRAPADAGFAEP*
JGI12712J15308_101057891	3300001471	Forest Soil	FLALLGGATLLYLGTAWLFRCHELEEIYGIATRRRSPADAGYAEP*
JGI12635J15846_104534812	3300001593	Forest Soil	CWFGNRYTQFTLHSRFLVQLLVFSGLIAGATALYLALAWVFRCHEIQEVYGIATRRRASAGDGYPEP*
JGI12635J15846_105627712	3300001593	Forest Soil	FLVQLLVFTGLITGATVLYLALAWVFRCHEIEEVYGIATRRTAGGGSGYAEP*
JGI12635J15846_107609132	3300001593	Forest Soil	MHSRFLVQLLTFLALLGGATLLYLGTAWLFRCHELEEIYGIATRKRAPADTGFAEP*
JGI26342J46808_10028943	3300003220	Bog Forest Soil	FTVHSRFLVQLLVFSGLIVGATALYLGLAWIFRCHEIQEVYGIATRKRASAGNGFAEP*
JGI26344J46810_10144442	3300003224	Bog Forest Soil	HSRFLIQLLVFSGLIAGATALYLGLAWLFRCHEIQEVYGIATRRTASAAESGYTEL*
JGI26346J50198_10089002	3300003351	Bog Forest Soil	TMHSRFLVQLLVFSGLIVGATTLYLTLAWLFRCHEIQEVYGIATRRRAGGGNGYGEL*
Ga0062388_1028842971	3300004635	Bog Forest Soil	RFLVQLLVFSGLIVGATALYLGLAWLFRCSEIHEVYGIATRRRAGAGDGGPEL*
Ga0066672_103683922	3300005167	Soil	FTIHSRFLVQLVVFAALIIGATAVYLALASLFRCHEIEEVYGIATRRTVGAGNGYAEP*
Ga0066673_101349191	3300005175	Soil	YYTAFTIHSRFLVQLVVFAALIIGATAVYLALAWLFRCHEIEEVYGIATRRTVGAGNGYVEP*
Ga0066679_100475033	3300005176	Soil	HSRFLVQFLVFAALILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS*
Ga0066685_106323512	3300005180	Soil	HSRFLVQFLVFAGLILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS*
Ga0066676_100507431	3300005186	Soil	WFGNYYTRFALHSRFLVQFLVFAALILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDAYMGS*
Ga0066689_102629951	3300005447	Soil	VACWFGNYYTGFALHSRFLVQFVVFAGLILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS*
Ga0070707_1007535812	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	FGIQLLVFTGLILGATALYLALAWIVRCHEIEEVYGIAVRRRTGSFLES*
Ga0066707_108387111	3300005556	Soil	VQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTVGAGNGYAEP*
Ga0066691_103177472	3300005586	Soil	YTAFTVNSRFLVQLSVFAGLITGATVLYLLLAWVFRCREIEEVYGIAVRRRPAGESGYAEL*
Ga0066706_108168031	3300005598	Soil	RFLVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGSGDGYMES*
Ga0070762_113183642	3300005602	Soil	TAFTVHSRFLVQLLVFAGLIGGATVLYLALAWLFRCHEIEEVYGIATRRTAGGGNGYAEP
Ga0066656_102435531	3300006034	Soil	IQLLVFAGLMTGATLLYLALAWVFRCHEIQEVYGIAVRRRAGVGEGGYAEL*
Ga0075028_1003723072	3300006050	Watersheds	NYYTGFALHSRFFVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYVGS*
Ga0075028_1004161601	3300006050	Watersheds	YYTTFTIHSRFLVQLLVFAGLILGATVLYLALAWLFRCHEIEEVYGIATRRRVSGANGLSEP*
Ga0070712_1018449971	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RFLVQLLTFLALLGGATLLYLGTAWLFRCHELEEIYGIATRRRTPADTGFAEP*
Ga0079222_126406622	3300006755	Agricultural Soil	ATHARFLVQFLVFFALIGGATALYLALAWLFRCHEIEEVYGIATRRATGADDGFVGT*
Ga0066658_103039912	3300006794	Soil	RFLVQFLVFAGLILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS*
Ga0066658_108108392	3300006794	Soil	VQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGAGNGYVGP*
Ga0079221_111481312	3300006804	Agricultural Soil	FLVQLIVFAGLIVGATVLYLALAWVFRCHEIQEVYGIAVRRRAGAGDGGYTGA*
Ga0073928_102972663	3300006893	Iron-Sulfur Acid Spring	FLALLGGATLLYLGTAWLFRCHELEEIYGIATRRRAPADAGFAEP*
Ga0075435_1002205911	3300007076	Populus Rhizosphere	HSRFLVQVSVFTGLIVGATLLYLALAWVFRCHEIQEVYGIAVRRRAGAGEGGYTGA*
Ga0099794_102492792	3300007265	Vadose Zone Soil	LHSRFLVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGSGDGYLGS*
Ga0099829_115153101	3300009038	Vadose Zone Soil	RFLVQLSVFAGLITGATVLYLLLAWVFRCREIEEVYGIAVRRRPAGESGYAEL*
Ga0099828_103101213	3300009089	Vadose Zone Soil	HSRFLVQLLVFAALIVGATALYLALAWLFRCHEIEEVYGIATRRTVGAVDGYVEP*
Ga0099828_109697052	3300009089	Vadose Zone Soil	HSRFLVQLLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDEYLGS*
Ga0099828_118777041	3300009089	Vadose Zone Soil	RFLVQLLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDEYLGS*
Ga0099792_108335561	3300009143	Vadose Zone Soil	YTAFTLHSRFLVQLLVFAGLIIGATSLYLALAWLFRCHEIEEVYGIATRRTAGSGDGYLES*
Ga0116214_13422222	3300009520	Peatlands Soil	LIQLLVFSGLIAGATVLYLGLAWLFRCHEIQEVYGIATRRRAGAGEGFGDS*
Ga0116103_10112141	3300009615	Peatland	TLFTMQARFLVQLSVFTGLILGATILYLALAWLFRCHELEEVYGIAVHRGPAAQTGYTVP
Ga0134084_100237743	3300010322	Grasslands Soil	SRFLIQLLVFAGLMTGATLLYLALAWVFRCHEIQEVYGIAVRRRAGAGEGYAEL*
Ga0134063_107341162	3300010335	Grasslands Soil	GNHYTAFTVHSRFLVQLLVFAGLITGATVLYLALAWIFRCHEIEEVYGIAVRRRTAGGEGGYAGA*
Ga0134062_105858082	3300010337	Grasslands Soil	SRFLVQLLVFAGLITGATVLYLALAWIFRCHEIEEVYGIATRRRTAGGEGGYAEA*
Ga0126372_111054021	3300010360	Tropical Forest Soil	TEFTMHSRFGVQLLVFTAMIVGATALYLALAWLMRCREIHEVYGIALRRKSGDEEGLAEA
Ga0126372_112115731	3300010360	Tropical Forest Soil	SRFLVQVSVFTGLIVGATVLYLALAWVFRCHEIQEVYGIAVRRRAGAGEGGYAEL*
Ga0126372_118000471	3300010360	Tropical Forest Soil	LVQLAVFTGLITGATVLYLALAWVFRCREIEEVYGIAIRHRTAGGEGGYEEA*
Ga0126379_126376502	3300010366	Tropical Forest Soil	SVFTGLIVGATLLYLALAWIFRCHEIQEVYGIAVRRRAGAGEGGYAEL*
Ga0126383_100570181	3300010398	Tropical Forest Soil	SRFLIQLLVFSGLIAGATVLYLALAWVFRCHEIQEVYGIAVRRRAGEESGYVGG*
Ga0137392_102995033	3300011269	Vadose Zone Soil	TIHSRFLVQLMVFTGLITGATVLYLALAWLFRCREIEEVYGIATRRRAGAGSDYVEL*
Ga0137393_106827072	3300011271	Vadose Zone Soil	GNYYTGFALHSRFFVQFLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGATNGYVEP*
Ga0137389_103526283	3300012096	Vadose Zone Soil	ACWFGNYYTGFALHSRFLVQLLVFVGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGTGDGYMGS*
Ga0137388_117274952	3300012189	Vadose Zone Soil	LHSRFFVQFLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTAGATNGYVEP*
Ga0137388_118474351	3300012189	Vadose Zone Soil	LLVFAALIVGATALYLALAWLFRCHEIEEVYGIATRRAAGAGDGYVGS*
Ga0137399_104634292	3300012203	Vadose Zone Soil	FFVQLLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGATNGYVGP*
Ga0137399_109778212	3300012203	Vadose Zone Soil	TTFTIHSRFLVQLLVFAGLITGATVLYLVLAWIFRCHEIEEVYGIATRRRIGGGDGYAEP
Ga0137370_103104412	3300012285	Vadose Zone Soil	YTGFALHSRFLVQFLVFAALILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS*
Ga0137386_111699641	3300012351	Vadose Zone Soil	AFTVHSRFLVQLVVFAGLITGATALYLALAWIFRCHEIEEVYGIAIRRRTAGGEGGYAEA
Ga0137385_103846192	3300012359	Vadose Zone Soil	VHSRFLVQLVVFAGLITGATALYLALAWIFRCHEIEEVYGIAIRRRTAGGEGGYAEA*
Ga0137361_116896332	3300012362	Vadose Zone Soil	FGNYYTTFTIHSRFLVQLLVFAGLLTGATVLYLVLAWIFRCHEIEEVYGIATRRRVGGGDGYAEP*
Ga0137390_106475451	3300012363	Vadose Zone Soil	LHSRFLVQLLVFAALIVGATALYLALAWLFRCHEIEEVYGIATRRTAGAGEGYLEP*
Ga0137419_113495001	3300012925	Vadose Zone Soil	NYYTTFTIHSRFAVQLLVFAGLIIGATVLYLALAWIFRCHEIEEVYGIATRRRIGGGNGYAEP*
Ga0137407_104467622	3300012930	Vadose Zone Soil	FLVQLLVFAGLIVGATVLYLALAWVFRCHEIEEVYGIATRRRIGGGDGYAEP*
Ga0126375_101471121	3300012948	Tropical Forest Soil	QLLVFSGLIIGATVLYLALAWIFRCHEIEEIYGIAIRRRTMDDGSGYAEV*
Ga0134075_101092222	3300014154	Grasslands Soil	SRFLVQLMVFTGLITGATVLYLALAWLFRCREIEEVYGIATRRRAGAGSDYVEL*
Ga0137409_106602771	3300015245	Vadose Zone Soil	FGNYYTGFAMHSRFLVQFFVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRATGAGDGFVES*
Ga0134112_103369882	3300017656	Grasslands Soil	ACWFGNYYTGFALHSRFLVQFLVFAGLILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS
Ga0187877_10000951	3300017931	Peatland	LSVFTGLILGATILYLALAWLFRCHELEEVYGIAVHRGPAAQTGYTVP
Ga0187822_103279012	3300017994	Freshwater Sediment	MKKTVSFALICAGFIAGATALYLGLAWLFRCHEIHEVYGIATRQRAGGGDGYAET
Ga0187788_100506733	3300018032	Tropical Peatland	EFTMQSRFSVQLLVFTALIVGATVLYLAAAWLLRCREIHEVYGIALRRKTGEGELAGA
Ga0187765_101677821	3300018060	Tropical Peatland	TMHSRFGVQLLVFTAMIVGATALYLALAWLMRCREIHEVYGIALRRKSGDEEGLAEA
Ga0187770_110330362	3300018090	Tropical Peatland	RFLMQLLVFSAMIAGATGLYLALAWLFRCHEVQEVYGIAVRRRAGSGADVEL
Ga0066662_105127291	3300018468	Grasslands Soil	HSRFLVQLMVFTGLITGATVLYLALAWLFRCREIEEVYGIATRRRAGAGSDYVEL
Ga0193729_10466291	3300019887	Soil	LTFLALLGGATLLYLGTAWLFRCHELEEIYGIATRRRTPADTGFAEP
Ga0193728_12287271	3300019890	Soil	MHSRFLVQLLTFLALILGATGLYLALAWLFRCHEMEEIYGIATRRRSPASSGFAEP
Ga0193721_10211221	3300020018	Soil	SRFLVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTVGAGDGYLES
Ga0179594_100734632	3300020170	Vadose Zone Soil	LHSRFLVQLLVFAALIIGATALYLALAWLFRCHEIEEVYGIAARRTAGAGEGYLEP
Ga0179592_100703433	3300020199	Vadose Zone Soil	LVQLLVFTALIGGATALYLALAWLFRCHEIEEVYGIATRRTVGTGEGYTGS
Ga0179592_104042251	3300020199	Vadose Zone Soil	TIHSRFLVQLLVFSGLILGATALYLGLAWLFRCHEIEEVYGIATRRTAGASAGDGYEGS
Ga0210407_102619471	3300020579	Soil	QVLIFAGLIIGATVLYLLLAWLFRCHEIEEVYGIATRRTAGGGNGYAEP
Ga0210407_104649482	3300020579	Soil	AWFGMHYTEFTMHSRFLVQLLTFLALLGGATLLYLGMAWLFRCHELEEIYGIATRRRAPADAGFAEP
Ga0210407_114601152	3300020579	Soil	MHSRFGVQLLVFTGLILGATALYLFLAWAFHCREVHEVYGIARRRKTGDEAYAEG
Ga0210403_107755542	3300020580	Soil	YTEFAMHSPFVIQLLIFTGLIVGATVLYLGLTWLFRCHEIEEVYGIATRRRVASGGNGYTEP
Ga0210399_102928853	3300020581	Soil	YTAFTMHSRFGVQLLVFTGLILGATALYLFLAWAFHCREVHEVYGIARRRKTGDEAYAEG
Ga0210399_106037801	3300020581	Soil	VFAGLIFGATALYLGLAWIVRCHEIEEVYGIAVRRQAGSLADY
Ga0210395_112014271	3300020582	Soil	SRFLVQLLVFSGLIFGATALYLGLAWLFRCSEIHEVYGIATRRRAGAGDGAPEL
Ga0210396_103524523	3300021180	Soil	TIHSRFLVQLLVFSGLIAGATVLYLGLAWLFRCHEIQEVYGIATRRRAGAGDGFGDA
Ga0210396_117341552	3300021180	Soil	EFTRHSRFLVQLLTFLALLGGATLLYLGTAWLFRCHELEEIYGIATRRRSPADTGYAEP
Ga0210388_118074022	3300021181	Soil	VQLLVFSELIVGATALYLALAWLFRCHEIQEVYGIATRRRAGAGDGYLEP
Ga0210387_105421832	3300021405	Soil	SRCLVQLLVFSGLIVGATALYLALAWLFRCHEIQEVYGIATRRRAGAGNGYTET
Ga0210383_104661332	3300021407	Soil	LVQLLVFSGLIVGATALYLALAWLFRCHEIQEVYGIATRRRAGAGNDYTET
Ga0210409_110118671	3300021559	Soil	MGVACWFGNYYTGFALHSRFFVQFLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGATNGYVEP
Ga0242662_100555661	3300022533	Soil	TEFTMHSRFLVQLLVFSGLIVGATALYLALAWLFRCHEIQEVYGIATRRRAGAGDGFGDS
Ga0212123_109035522	3300022557	Iron-Sulfur Acid Spring	MHYTEFTMHSRFLVQLLTFLALLGGATLLYLGTAWLFRCHELEEIYGIATRRRTPEDTGFAEP
Ga0247665_10094252	3300024219	Soil	AFTVQSRFLVQLLVFSGLIAGATALYLGLAWLFRCHEIREVYGIATRRTAGGGDGFAEP
Ga0208456_10521921	3300025441	Peatland	QARFLVQLSVFTGLILGATILYLALAWLFRCHELEEVYGIAVHRGPAAQTGYTVP
Ga0209471_10405703	3300026318	Soil	AFALHSRFLVQFLVFAALILGATALYLALAWLFRCHEIEEVYGIATRRTAGAGDGYMGS
Ga0209471_11975701	3300026318	Soil	LVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTVGAGDGYLES
Ga0209802_11533352	3300026328	Soil	YTTFTIHSRFLVQLLVFAALIVGATALYLALAWLFRCHEIEEVYGIATRRTVGAGNGYAE
Ga0209158_12485931	3300026333	Soil	YTAFTVNSRFLVQLSVFAGLITGATVLYLLLAWVFRCREIEEVYGIAVRRRPAGESGYAE
Ga0209159_11811961	3300026343	Soil	SFTVHSRFLVQFGVFAGLIIGATVLYLALAWVFRCHEIEEVYGIAVRRRTAGGEGGYTGE
Ga0257167_10443402	3300026376	Soil	RFLVQLLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGAGEGYLEP
Ga0257164_10785871	3300026497	Soil	ALHSRFFVQFLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGATNGYVGP
Ga0209160_10675303	3300026532	Soil	QLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIAMRRTAGSGDGYMES
Ga0209648_102361191	3300026551	Grasslands Soil	SRFFVQLLVFAGLIIGATAIYLALAWLFRCHEIEEVYGIATRRTAGAGDGYGEP
Ga0209577_105760852	3300026552	Soil	FLIQLLVFAGLMTGATLLYLALAWVFRCHEIQEVYGIAVRRRAGAGEGYAEL
Ga0208983_11077032	3300027381	Forest Soil	FTIHSRFLVQLLVFAGLIVGATVLYLALAWIFRCHEIEEVYGIATRRRVGGGYAEP
Ga0209528_10759591	3300027610	Forest Soil	FTLHSRFLVQLLVFAALIIGATALYLALAWLFRCHEIEEVYGIATRRTAGAGEGYLEP
Ga0209076_10245103	3300027643	Vadose Zone Soil	FTIYSRFLVQLLVFAALIVGATALYLVLAWLFRCHEIEEVYGIAMRRAAGSGDGYVEP
Ga0209736_11664662	3300027660	Forest Soil	SRFLVQLLVFSGLIAGATALYLALAWVFRCHEIQEVYGIATRRRASAGDGYPEP
Ga0209693_106254831	3300027855	Soil	FTVHSRFLVQLLVFAGLIGGATVLYLALAWLFRCHEIEEVYGIATRRTAGGGNGYAEP
Ga0209579_106448221	3300027869	Surface Soil	QFTLNSPFLIQLVVFGGMLAGATVLYLGLAWIFRCHEIQEIYGIATRRRSGSFEELAES
Ga0209698_100041091	3300027911	Watersheds	LVQLVVFSGLILGATALYLGLAWLFRCHEIEEVYGIATRRTAGASAGDGYVGS
Ga0265319_12823271	3300028563	Rhizosphere	MHSRFLVQLLVFSGLIVGATALYLALAWIFRCHEIQEVYGIATRRRAGAGDGFGDS
Ga0307308_100211833	3300028884	Soil	WFGNYYTTFTIHSRFLVQLLVFAGLIIGATALYLALAWLFRCHEIEEVYGIATRRTVGAGDGYLEP
Ga0265745_10007033	3300030759	Soil	FLVQLLVFSGLIVGATALYLALAWLFRCREIQEVYGIATRRRAGAGNGYTEP
Ga0318542_106354491	3300031668	Soil	VQLVVFAGLLTGATALYLALAWIFRCHEIEEVYGIAVRRRTAGGEGGYAEA
Ga0310686_1122731492	3300031708	Soil	LVQLLVFSGLIVGATALYLALAWLFRCHEIQEVYGIATRRRAGAGDGAPEL
Ga0307474_102376323	3300031718	Hardwood Forest Soil	LHSRFLVQLLVFSGLIAGATALYLALAWLFRCHEIQEVYGIATRRRAGGGNGYAEL
Ga0307468_1002068251	3300031740	Hardwood Forest Soil	LVQLLVFSGLIAGATALYLGLAWLFRCHEIHEVYGIATRRRASAGDGYAEL
Ga0307468_1011387381	3300031740	Hardwood Forest Soil	FTIHSRFLVQLLVFAGLITGATVLYLALAWIFRCHEIEEVYGIATRKRIGGGDGYVEP
Ga0307477_102702842	3300031753	Hardwood Forest Soil	IPATRFLIQLPVFAGLIIGATILYLLLAWVFRCPEIEEVYGIAVRRRGAGDEALAEP
Ga0307477_106241842	3300031753	Hardwood Forest Soil	VFSGLLFGATALYLALAWLFRCHEIEEVYGIAIRRTAGAGAGAGEGMLGG
Ga0307475_111249782	3300031754	Hardwood Forest Soil	FGNYYTVFTIHSRFLVQLLVFSGLIVGATALYLGLAWLFRCHEIEEVYGIATRRTAGASAGDGYEGS
Ga0307475_115863131	3300031754	Hardwood Forest Soil	FTLHSRFLVQLMVFAALIVGATALYLALAWLFRCHEIEEVYGIATRRAAGASAGDGYAGN
Ga0307478_102854881	3300031823	Hardwood Forest Soil	TAFTLHSRFLIQLLVFSGLIAGATVLYLGLAWLFRCHEIQEVYGIATRRRAGAGDGFGDA
Ga0307478_103549582	3300031823	Hardwood Forest Soil	YTAFTMHSRFLVQLLTFLALLGGATLLYLGMAWLFRCHELEEIYGIATRRRAPADVGFAE
Ga0318551_102907702	3300031896	Soil	WVGNRYTAFTLHSRFLVQLVVFAGLLTGATALYLALAWIFRCHEIEEVYGIAVRRRTAGGEGGYAEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068266

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences