Metagenome / Metatranscriptome Family F068260

Basic Information
Family ID	F068260
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	37 residues
Representative Sequence	MDEWPNKSPEPTAVGAVSSAVAVHVASRRWLSFFR
Number of Associated Samples	77
Number of Associated Scaffolds	124

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	61.47 %
% of genes near scaffold ends (potentially truncated)	53.60 %
% of genes from short scaffolds (< 2000 bps)	49.60 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Unclassified (54.400 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog (33.600 % of family members)
Environment Ontology (ENVO)	Unclassified (40.800 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.200 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 124 Family Scaffolds
PF13240	zinc_ribbon_2	2.42
PF06877	RraB	1.61
PF07285	DUF1444	1.61
PF02371	Transposase_20	1.61
PF07963	N_methyl	1.61
PF09951	DUF2185	0.81
PF13495	Phage_int_SAM_4	0.81
PF14112	DUF4284	0.81
PF07589	PEP-CTERM	0.81
PF02517	Rce1-like	0.81
PF12681	Glyoxalase_2	0.81
PF13649	Methyltransf_25	0.81
PF04355	SmpA_OmlA	0.81
PF14206	Cys_rich_CPCC	0.81
PF13370	Fer4_13	0.81
PF10997	Amj	0.81
PF13676	TIR_2	0.81
PF05157	T2SSE_N	0.81
PF04545	Sigma70_r4	0.81
PF05154	TM2	0.81
PF01476	LysM	0.81
PF00565	SNase	0.81
PF02674	Colicin_V	0.81
PF14568	SUKH_6	0.81
PF12831	FAD_oxidored	0.81
PF07603	DUF1566	0.81
PF04862	DUF642	0.81
PF13783	DUF4177	0.81
PF13637	Ank_4	0.81
PF01564	Spermine_synth	0.81
PF00583	Acetyltransf_1	0.81
PF14354	Lar_restr_allev	0.81
PF03143	GTP_EFTU_D3	0.81
PF16845	SQAPI	0.81
PF15601	Imm70	0.81
PF09346	SMI1_KNR4	0.81
PF13302	Acetyltransf_3	0.81
PF00359	PTS_EIIA_2	0.81
PF08388	GIIM	0.81
PF06271	RDD	0.81

COG ID	Name	Functional Category	% Frequency in 124 Family Scaffolds
COG3076	Regulator of RNase E activity RraB	Translation, ribosomal structure and biogenesis [J]	1.61
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.61
COG4848	YtpQ protein involved in methylglyoxal resistance, DUF1444/UPF0354 family	General function prediction only [R]	1.61
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.81
COG1286	Colicin V production accessory protein CvpA, regulator of purF expression and biofilm formation	Cell wall/membrane/envelope biogenesis [M]	0.81
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.81
COG2314	Uncharacterized membrane protein YozV, TM2 domain, contains pTyr	General function prediction only [R]	0.81
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.81
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.81

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
All Organisms	root	All Organisms	45.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
cellular organisms	root	All Organisms → cellular organisms	45.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	20.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.60 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.60 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.80 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	16.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.40 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.60 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.80 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.80 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.80 %
Lentisphaerae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae	0.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	8.00 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	3.20 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.40 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.60 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.80 %
unclassified Lentisphaerota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota	0.80 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8.00 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3.20 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.60 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.80 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.80 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.80 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.80 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.80 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8.00 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	2.40 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.80 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.80 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.80 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.80 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.80 %
unclassified Planctomycetales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales	0.80 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	1.60 %
Planctomycetales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	0.80 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.80 %
Desulfobacterales bacterium S7086C20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S7086C20	0.80 %
Planctomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomicrobium	0.80 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.80 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	0.80 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.80 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1.60 %
Planctomicrobium piriforme	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomicrobium → Planctomicrobium piriforme	0.80 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.80 %
Prosthecobacter fusiformis	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter → Prosthecobacter fusiformis	0.80 %
Planctomycetales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	0.80 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.80 %
Desulfobacterales bacterium S7086C20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S7086C20	0.80 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.80 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.40 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.40 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1.60 %
Planctomicrobium piriforme	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomicrobium → Planctomicrobium piriforme	0.80 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.80 %
Prosthecobacter fusiformis	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter → Prosthecobacter fusiformis	0.80 %
Planctomycetales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	0.80 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.80 %
Desulfobacterales bacterium S7086C20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S7086C20	0.80 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.80 %
Lentisphaerota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	0.80 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.80 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001401\|JGI20189J14885_1038338	Not Available	618	Open in IMG/M
3300005831\|Ga0074471_10172835	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Planctomicrobium → Planctomicrobium piriforme	667	Open in IMG/M
3300006104\|Ga0007882_10019615	All Organisms → cellular organisms → Bacteria → Proteobacteria	3150	Open in IMG/M
3300006104\|Ga0007882_10070999	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300006162\|Ga0075030_100014401	All Organisms → cellular organisms → Bacteria	6903	Open in IMG/M
3300006638\|Ga0075522_10006221	All Organisms → cellular organisms → Bacteria	8359	Open in IMG/M
3300006638\|Ga0075522_10008171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7142	Open in IMG/M
3300006642\|Ga0075521_10421518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	650	Open in IMG/M
3300009029\|Ga0066793_10550477	Not Available	658	Open in IMG/M
3300009510\|Ga0116230_10678667	Not Available	774	Open in IMG/M
3300009839\|Ga0116223_10778431	Not Available	548	Open in IMG/M
3300010379\|Ga0136449_100085116	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6632	Open in IMG/M
3300014161\|Ga0181529_10665495	Not Available	539	Open in IMG/M
3300014167\|Ga0181528_10124488	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1398	Open in IMG/M
3300014168\|Ga0181534_10014972	All Organisms → cellular organisms → Bacteria	3991	Open in IMG/M
3300014168\|Ga0181534_10024030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3061	Open in IMG/M
3300014200\|Ga0181526_10439303	Not Available	827	Open in IMG/M
3300014201\|Ga0181537_10795213	Not Available	642	Open in IMG/M
3300014201\|Ga0181537_10883895	Not Available	605	Open in IMG/M
3300014491\|Ga0182014_10199055	Not Available	1084	Open in IMG/M
3300014493\|Ga0182016_10207188	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	1261	Open in IMG/M
3300014499\|Ga0182012_10040087	Not Available	3883	Open in IMG/M
3300014499\|Ga0182012_10399793	Not Available	907	Open in IMG/M
3300014501\|Ga0182024_10127106	Not Available	3633	Open in IMG/M
3300014654\|Ga0181525_10203557	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300014655\|Ga0181516_10007869	All Organisms → cellular organisms → Bacteria	6188	Open in IMG/M
3300014655\|Ga0181516_10189194	Not Available	1044	Open in IMG/M
3300014655\|Ga0181516_10208396	Not Available	992	Open in IMG/M
3300014655\|Ga0181516_10355934	Not Available	746	Open in IMG/M
3300014657\|Ga0181522_10031833	Not Available	2916	Open in IMG/M
3300014838\|Ga0182030_10096448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter → Prosthecobacter fusiformis	4124	Open in IMG/M
3300014838\|Ga0182030_10096708	All Organisms → cellular organisms → Bacteria	4116	Open in IMG/M
3300014838\|Ga0182030_10610070	Not Available	1050	Open in IMG/M
3300014838\|Ga0182030_10855916	Not Available	822	Open in IMG/M
3300014839\|Ga0182027_11371095	Not Available	701	Open in IMG/M
3300016700\|Ga0181513_1189632	Not Available	944	Open in IMG/M
3300017988\|Ga0181520_10016581	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	8862	Open in IMG/M
3300017988\|Ga0181520_10021007	Not Available	7443	Open in IMG/M
3300018025\|Ga0187885_10367447	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	646	Open in IMG/M
3300018046\|Ga0187851_10736068	Not Available	555	Open in IMG/M
3300021520\|Ga0194053_10335434	Not Available	580	Open in IMG/M
3300022524\|Ga0224534_1001709	All Organisms → cellular organisms → Bacteria	11211	Open in IMG/M
3300022524\|Ga0224534_1009249	Not Available	3166	Open in IMG/M
3300022524\|Ga0224534_1013617	Not Available	2384	Open in IMG/M
3300023068\|Ga0224554_1002576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9342	Open in IMG/M
3300023068\|Ga0224554_1002576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9342	Open in IMG/M
3300023088\|Ga0224555_1030118	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2318	Open in IMG/M
3300023091\|Ga0224559_1018945	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2932	Open in IMG/M
3300023091\|Ga0224559_1292806	Not Available	541	Open in IMG/M
3300025470\|Ga0208389_1035427	Not Available	999	Open in IMG/M
3300025496\|Ga0208191_1044473	Not Available	979	Open in IMG/M
3300025648\|Ga0208507_1009123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4217	Open in IMG/M
3300025648\|Ga0208507_1056044	Not Available	1283	Open in IMG/M
3300025829\|Ga0209484_10168062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	538	Open in IMG/M
3300025862\|Ga0209483_1002250	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	13660	Open in IMG/M
3300025891\|Ga0209585_10008727	All Organisms → cellular organisms → Bacteria	3675	Open in IMG/M
3300027736\|Ga0209190_1104799	Not Available	1297	Open in IMG/M
3300027854\|Ga0209517_10186463	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → unclassified Planctomycetales → Planctomycetales bacterium	1293	Open in IMG/M
3300028745\|Ga0302267_10207351	Not Available	868	Open in IMG/M
3300028779\|Ga0302266_10051483	Not Available	1834	Open in IMG/M
3300028800\|Ga0265338_10011230	All Organisms → cellular organisms → Bacteria	10377	Open in IMG/M
3300028800\|Ga0265338_10076310	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2839	Open in IMG/M
3300028800\|Ga0265338_10111780	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium S7086C20	2198	Open in IMG/M
3300028800\|Ga0265338_11175068	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300028866\|Ga0302278_10074797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1975	Open in IMG/M
3300029911\|Ga0311361_10054494	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6350	Open in IMG/M
3300029911\|Ga0311361_10077528	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4958	Open in IMG/M
3300029911\|Ga0311361_10143950	Not Available	3155	Open in IMG/M
3300029911\|Ga0311361_10401244	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1440	Open in IMG/M
3300029911\|Ga0311361_10969731	Not Available	717	Open in IMG/M
3300029913\|Ga0311362_10045668	All Organisms → cellular organisms → Bacteria	6769	Open in IMG/M
3300029913\|Ga0311362_10048632	All Organisms → cellular organisms → Bacteria	6479	Open in IMG/M
3300029913\|Ga0311362_10070229	All Organisms → cellular organisms → Bacteria	4978	Open in IMG/M
3300029913\|Ga0311362_11148601	Not Available	585	Open in IMG/M
3300029914\|Ga0311359_11080395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	534	Open in IMG/M
3300029915\|Ga0311358_10174131	All Organisms → cellular organisms → Bacteria	2005	Open in IMG/M
3300029915\|Ga0311358_10770827	Not Available	694	Open in IMG/M
3300029922\|Ga0311363_10000087	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	166671	Open in IMG/M
3300029922\|Ga0311363_10765767	Not Available	898	Open in IMG/M
3300029952\|Ga0311346_10041860	All Organisms → cellular organisms → Bacteria	6761	Open in IMG/M
3300029952\|Ga0311346_10077053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4475	Open in IMG/M
3300029952\|Ga0311346_10140230	All Organisms → cellular organisms → Bacteria	2908	Open in IMG/M
3300029953\|Ga0311343_10505837	Not Available	1070	Open in IMG/M
3300029954\|Ga0311331_10558546	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1097	Open in IMG/M
3300029954\|Ga0311331_10836301	Not Available	824	Open in IMG/M
3300029957\|Ga0265324_10018483	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2519	Open in IMG/M
3300029982\|Ga0302277_1115291	Not Available	1147	Open in IMG/M
3300029982\|Ga0302277_1304238	Not Available	582	Open in IMG/M
3300030041\|Ga0302274_10012840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6215	Open in IMG/M
3300030506\|Ga0302194_10022524	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	3421	Open in IMG/M
3300030508\|Ga0302185_10194656	Not Available	693	Open in IMG/M
3300030508\|Ga0302185_10290788	Not Available	550	Open in IMG/M
3300030518\|Ga0302275_10173502	Not Available	1315	Open in IMG/M
3300030518\|Ga0302275_10487697	Not Available	621	Open in IMG/M
3300030688\|Ga0311345_10116790	All Organisms → cellular organisms → Bacteria	2973	Open in IMG/M
3300030688\|Ga0311345_10232489	Not Available	1824	Open in IMG/M
3300030688\|Ga0311345_10520844	Not Available	1014	Open in IMG/M
3300030688\|Ga0311345_10637840	Not Available	873	Open in IMG/M
3300031231\|Ga0170824_108807454	Not Available	522	Open in IMG/M
3300031247\|Ga0265340_10020598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3386	Open in IMG/M
3300031261\|Ga0302140_10163789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2078	Open in IMG/M
3300031524\|Ga0302320_10093691	All Organisms → cellular organisms → Bacteria	4885	Open in IMG/M
3300031524\|Ga0302320_11209425	Not Available	773	Open in IMG/M
3300031788\|Ga0302319_10460240	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1386	Open in IMG/M
3300031788\|Ga0302319_10611130	Not Available	1131	Open in IMG/M
3300031884\|Ga0316220_1092325	All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerota bacterium	1157	Open in IMG/M
3300032954\|Ga0335083_10420919	Not Available	1136	Open in IMG/M
3300033405\|Ga0326727_10043908	All Organisms → cellular organisms → Bacteria	7304	Open in IMG/M
3300034282\|Ga0370492_0078375	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.00%
Host-Associated	Host-Associated	8.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.60%
Aquatic	Environmental → Aquatic	26.40%
Plants	Host-Associated → Plants	8.00%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	44.00%
Freshwater	Environmental → Aquatic → Freshwater	24.80%
Soil	Environmental → Terrestrial → Soil	21.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.20%
Sediment	Environmental → Aquatic → Sediment	1.60%
Peat Moss	Host-Associated → Plants → Peat Moss	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	44.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	9.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.20%
Lentic	Environmental → Aquatic → Freshwater → Lentic	6.40%
Lake	Environmental → Aquatic → Freshwater → Lake	1.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.60%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	44.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.00%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	10.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.20%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.60%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	4.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.40%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.60%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	33.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	13.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	7.20%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	6.40%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	6.40%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.60%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	4.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.40%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.40%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.40%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.40%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	1.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.60%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.60%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.80%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.80%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.80%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.80%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.80%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.80%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001401	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012	Environmental	Open in IMG/M
3300005831	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM	Environmental	Open in IMG/M
3300006104	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016700	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300021520	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-8m	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300023088	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025400	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025470	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025496	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40 (SPAdes)	Environmental	Open in IMG/M
3300025648	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1 (SPAdes)	Environmental	Open in IMG/M
3300025829	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16B (SPAdes)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025891	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost154B-one (SPAdes)	Environmental	Open in IMG/M
3300027736	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030508	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_2	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031884	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005	Environmental	Open in IMG/M
3300032561	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068260

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20189J14885_10383381	3300001401	Arctic Peat Soil	MRLLPQPNQSPEPTAVGACSSAIAVHVASRRWLSF
Ga0074471_101728353	3300005831	Sediment (Intertidal)	MRDQSPNQSPEPTAVGACRSAIAVHVAGRRWLSFFVS
Ga0007882_100196157	3300006104	Freshwater	MKVLANKSPEPTAVGAVSSAVAVHVAGRRWLSFFR*
Ga0007882_100709993	3300006104	Freshwater	MTLMPNKSPEPTAVGAVRSAIAVHTAGRRWLSIFR*
Ga0075030_1000144012	3300006162	Watersheds	MTMWPNKSPEPTPVGAVSSAVAVRVAGRRWLSFFR*
Ga0075522_100062212	3300006638	Arctic Peat Soil	MKHLDYSRMPNKSPEPTAVGAGSSAIAVHVASRRWLSFLR*
Ga0075522_100081714	3300006638	Arctic Peat Soil	MAKDYPMMPNKSPEPTAVDAVSSAVAVHAASRRWLSFFR*
Ga0075521_104215182	3300006642	Arctic Peat Soil	MMVLVEAMTPNKSPEPTAVGAVSSAVAVHAASRRWLSFLR*
Ga0066793_105504771	3300009029	Prmafrost Soil	GSNLENHQMLPNKSPEPTAVSAFRSAIAVHVADAAWLSFLR*
Ga0116230_106786672	3300009510	Host-Associated	FADKWNIEAMMPNQSPEPTAVAAAVASHAASRRWLSFFR*
Ga0116223_107784311	3300009839	Peatlands Soil	EDDMMPNKSPEPTAVGAVRSAVAVRVASRRWLSLFR*
Ga0136449_1000851168	3300010379	Peatlands Soil	MIEAPNKSPEPTAVGACSSAVAVHVMSRRWFNFLRSL*
Ga0181517_100064578	3300014160	Bog	MIVNRYTPNKSPEPTAVGAISSAVAVPVASRRWLSFFR*
Ga0181529_100295712	3300014161	Bog	MESEVNRKPPNKSPEPTAVGACSSAIAVHVASRRWLSFFR*
Ga0181529_106654951	3300014161	Bog	AIEFVPMLPNKSPEPTAVGAVSSAIAVHVTSRRWLSFFR*
Ga0181528_101244881	3300014167	Bog	MSQPPNKSPEPTAVGAVSSAIAVHVASRRWLSSPL
Ga0181534_100149724	3300014168	Bog	MTVWPNKSPEPTAVGVGSSAVAVRVTSRRWLSFFR*
Ga0181534_100240301	3300014168	Bog	MTVMPNKSPEPTAVGAVSSAIAVHVTSRRWLSFFR
Ga0181526_104393031	3300014200	Bog	MTMWPNKSPEPTAVGAGRSAVAVHAASRRWLSFFR
Ga0181537_107952133	3300014201	Bog	DMDVRPNTSPEPIAVGAGSSAVAVHVASRRWLSFFR*
Ga0181537_108838951	3300014201	Bog	MDEWPNKSPEPTAVGAVRSAVAVHVASRRWLSFFR
Ga0182014_101990553	3300014491	Bog	DGGGEAMTPNQSPEPTAVGAGSSAIAVHVASRRWLSFFR*
Ga0182016_102071881	3300014493	Bog	MTMWPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0182017_109046031	3300014494	Fen	MLMSCDTHTPNKSPEPTAVGACSSAIAVHAASRRWL
Ga0182012_100400877	3300014499	Bog	MIRPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR*
Ga0182012_103997931	3300014499	Bog	ELDMSLMPNKSPEPTAVGAGSSAIAVHVAGRRWLSFFR*
Ga0182024_101271063	3300014501	Permafrost	MTTMSNKSPEPTAVGAVSSAVAVHVTSRRWLSFFR*
Ga0181525_102035571	3300014654	Bog	SLSALMFSNKSPEPTAVGAVSSAIAVHVASRRWLSFFR*
Ga0181516_1000786911	3300014655	Bog	MMRPNQSPEPTAVGAGRSAVAVHVASRRWLSFFR*
Ga0181516_101891941	3300014655	Bog	NQLQKDQMPNKSPEPTAVGAGRSAVAVHVASRRWLSFFR*
Ga0181516_102083963	3300014655	Bog	LFMIQVAMPNKALEPTAVGAGRSAIAVHVASRRWLSFFR*
Ga0181516_103559341	3300014655	Bog	MIVTRDQQPNKSPEPTAVGAVRSAVAVHVASRRWLS
Ga0181522_100318332	3300014657	Bog	MDEWPNKSPEPTAVGAVSSAVAVHVASRRWLSFFR*
Ga0182030_100964488	3300014838	Bog	VIMTMLPNKSPEPTAVGAVSSAVAVHVTSRRWLSFFR*
Ga0182030_100967083	3300014838	Bog	MIYDQQPNKSPEPTAVIAVSSAIAVHVASRRWLSFFR*
Ga0182030_106100701	3300014838	Bog	IMDFTSLMPNKSPEPTAVGAGSSAIAVQAASRRWLSFFR*
Ga0182030_108559163	3300014838	Bog	IMDFTSLMPNKSPEPTAVGAVRSAIAVHVASRRWLSFFR*
Ga0182027_113710952	3300014839	Fen	SLDLEVLMLMPNKSPEPTAVGAVSSAIAVHVVSRRWLSFFR*
Ga0182027_122503081	3300014839	Fen	MDSLPTAATPNKSPEPTAVGAVSSAVAVHVTSRRWLS
Ga0181513_11896321	3300016700	Peatland	GKDTQQPNKSPEPTAVGAGRSAVAVHVTSRRWLSFFR
Ga0181520_1001658115	3300017988	Bog	MIVNRYTPNKSPEPTAVGAISSAVAVPVASRRWLSFFR
Ga0181520_100210078	3300017988	Bog	MFISEAMLPNKTPEPTADGAVSSAIAVHAVSRRWLSFFR
Ga0187885_103674471	3300018025	Peatland	MFIHVKTPNKSPEPTAVGAVRSAVAVHVASRRWLSFFR
Ga0187851_107360681	3300018046	Peatland	MSQPPNKSPEPTAVGAGRSAVAVHVASRRWLSFFR
Ga0194053_103354341	3300021520	Anoxic Zone Freshwater	MTPPKSPELTADDAFSSTVAVHATSRRWLSFLRSA
Ga0224534_10017094	3300022524	Soil	MIMKSGPNKSPEPTAVGAGSSAVAVHAASRRWLSFFR
Ga0224534_10092496	3300022524	Soil	MIVTFSLPNKSPEPTAVGAVSSAIAVHIASRRWLSFFR
Ga0224534_10136175	3300022524	Soil	MSITMPQPNKSPEPTAVGAVSSAVAVHVASRRWLSFFR
Ga0224554_100257615	3300023068	Soil	MSSTATPNKSPEPTAVGARRSAVAVHAASRRWLSFFR
Ga0224554_10025767	3300023068	Soil	MVLFDEQPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0224555_10301185	3300023088	Soil	MSMTRLAAKSPEPTAVGAVSSAIAVHVASRRWLSCYEMS
Ga0224559_10189453	3300023091	Soil	MELDTPNKTLEPTADGAVSSAIAVHATSRRWLSFFR
Ga0224559_12928061	3300023091	Soil	MSEILTMWPNKTPEPTADDAVSSAIAVHAASRRWLSFFR
Ga0208387_10282783	3300025400	Freshwater	MIVMPRNVEPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0208389_10354273	3300025470	Freshwater	PSDTIMYSTVMPNQSPEPTAVGAVSSAVAVHVVSRRWLSFFR
Ga0208191_10444731	3300025496	Peatland	MKKVDQNMPPNKSPEPTAVGACSSAIAVHVTSRRWL
Ga0208507_10091236	3300025648	Freshwater	MKVLANKSPEPTAVGAVSSAVAVHVAGRRWLSFFR
Ga0208507_10560444	3300025648	Freshwater	RPKLMEHGLVMTKPPNKSPEPTAVGAVSSAIAVHVAGRRWLSFFR
Ga0209484_101680621	3300025829	Arctic Peat Soil	LIDMTVLPNKSPEPTAVGAGRSAIAVHAASRRWLSFLR
Ga0209483_100225017	3300025862	Arctic Peat Soil	MTMLPNKSPEPTAVGAVSSAIAVHVASRRWLSFLR
Ga0209585_1000872710	3300025891	Arctic Peat Soil	KMEDAMTMPNKSPEPTAVGAVRSAIAVNVASRRWLSFFR
Ga0209190_11047991	3300027736	Freshwater Lake	KQSQYYYEEQPNQSPEPTAVGAVSSAIAVHVASRRWLSFFR
Ga0209517_101864633	3300027854	Peatlands Soil	MMKNQPPNKSPEPTAVGAVNSAVAVHVASRRWLGFL
Ga0302267_102073513	3300028745	Bog	IEIYNLMPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0302202_104108322	3300028762	Bog	MVVFEMKPAPNKSPEPTAVGACSSAIAVHVASRRWLSFFR
Ga0302266_100514833	3300028779	Bog	MSIEIYNLMPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0265338_1001123013	3300028800	Rhizosphere	MSIEIYNLMPNKSPEPTAVGACSSAIAVHVASRRWLSFFR
Ga0265338_100763106	3300028800	Rhizosphere	MIDQPPNQSPEPTAVGAVSSAVAVHVASRRWLSFFR
Ga0265338_101117803	3300028800	Rhizosphere	VEIGIDRSNQSPEPTAVGAVSSAVAVHAAGRRWLSFLR
Ga0265338_102854423	3300028800	Rhizosphere	FIMDFTSLMPNKSPEPTAVGAVSSAIAVRVASRRWLSFFR
Ga0265338_105622392	3300028800	Rhizosphere	MRFYDEHPNTSQEPSAVGAVSSAVAVHLANRGWLGFL
Ga0265338_111750683	3300028800	Rhizosphere	AQHFLFGFFMVMFDEQPNKSPEPTGVGAVSSANAVHVAGRRWLSFFR
Ga0302278_100747971	3300028866	Bog	MYSQQPNKSPEPTAVGACSSAIAVHVASRRWLSFFR
Ga0302200_100037222	3300028909	Bog	MIYQSPNKSPEPTAVGACSSAIAVHAASRRWLSFLR
Ga0311361_100544943	3300029911	Bog	MITPRNHEPNQSPEPTAVGACLSAVAVHAASRRRLSFFR
Ga0311361_100775287	3300029911	Bog	MILSGRELQPNKSPEPTAVGAVRSAVAVHVASRRWLSFFR
Ga0311361_101439501	3300029911	Bog	MNPPPNKSPEPTAVGAVSSAVAVHVASRRWLSFFR
Ga0311361_104012443	3300029911	Bog	MIDLWPNKTLEPTADGAVSSAVAVHAASRRWLSFFR
Ga0311361_109697311	3300029911	Bog	FIMNFTISWPNKTLEPTADDAVSSAIAVHAASRRWLSFFR
Ga0311362_100456688	3300029913	Bog	MRQPPNKTPEPTADGVVSSTIAAHAASRRWLSFFR
Ga0311362_100486329	3300029913	Bog	MTMWPNKSPEPTAVGAVSSAIAVRVAGRRWLSFFR
Ga0311362_100702297	3300029913	Bog	MSESRVQQPNKSPEPTAVGAVSSAIAAHVASRRWLSFLR
Ga0311362_101171802	3300029913	Bog	MSDLLTMQANKSPEPTAVGAVSSAVAVHVARRRWLSFFR
Ga0311362_111486011	3300029913	Bog	AMILLPNKTLEPTADGAVSSAVAVHAASRRWLSFCR
Ga0311359_110803951	3300029914	Bog	MRLDDQPPNQSPEPTAVGAVSSAVAVHVASRRWLSF
Ga0311358_101741314	3300029915	Bog	RHAFATSMIKDRAVLPNKSPEPTGVGAGSSAIAVHAASRRWLSFFR
Ga0311358_107708271	3300029915	Bog	MNFTISWPNKTLEPTADGVVSSAIAVHAASRRWLS
Ga0311363_100000871	3300029922	Fen	IHFVSQAMTPNKSPEPTPVGAVRSASRFTVFGPAWLSFFR
Ga0311363_107657673	3300029922	Fen	MFLIEKMQPNQSPEPTAVGAVRSAVAVHVASRRWLSFF
Ga0311346_1004186012	3300029952	Bog	MTLMPNKSPEPTAVGAFCSAVAVRVASRRWLSFFR
Ga0311346_100770538	3300029952	Bog	MFLIEKMQPNQSPEPTAVGAVRSAVAVHVASRRWLSFFR
Ga0311346_101402303	3300029952	Bog	MKIQANQSPEPTAVGAGRSAVAVHVASRRWLSFFR
Ga0311343_105058371	3300029953	Bog	MTTMPNKSPEPTAVGACSSAVAVHAASRRWLSFFR
Ga0311331_105585462	3300029954	Bog	NKGMSRLVMPNKSPEPTAVGAVSSAIAVHVAGRRWLSFFR
Ga0311331_108363013	3300029954	Bog	MKPQPNQSPEPTAVGAGRSAVAVHVASRRWLSFFR
Ga0311331_112868661	3300029954	Bog	LVVTMLPNKSPEPTAVGAGRSAVAAHAVSRRWLSFFR
Ga0265324_100184836	3300029957	Rhizosphere	DAETLTGMTIVWPNKSPEPTAVGAVSSAVAVHVTSRLRLSFFR
Ga0265324_101462562	3300029957	Rhizosphere	RSRAPSRFMKIAMLPNKSPEPTAVDAGSSAVAVPVKRRRWLSFFR
Ga0302277_11152911	3300029982	Bog	MRHEWPNQSPEPTAVGACSSAIAVHVASRRWLSFF
Ga0302277_13042382	3300029982	Bog	SGDREMSMTPNKTLEPTADGVVSSAIAVHAASRRWLSYFR
Ga0302274_100128409	3300030041	Bog	MSRLVMPNKSPEPTAVGAVSSAIAVHVAGRRWLSFFR
Ga0302194_100225246	3300030506	Bog	MTMQPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0302185_101946562	3300030508	Bog	MTVSPNKSPEPTAVGAVSSAVAVHAASRRWLSFFR
Ga0302185_102907882	3300030508	Bog	MSLLPNQSPEPTAVGAVSSAIAVHVTSRRWLSFLR
Ga0302275_101735021	3300030518	Bog	MILSGRELQPNKSPEPTAVGAVRSAVAVHVASRRWLS
Ga0302275_104876972	3300030518	Bog	SLMIDLWPNKTLEPTADGAVSSAVAVHAASRRWLSFFR
Ga0311345_101167907	3300030688	Bog	VIMTMLPNKSPEPTAVGACRSAIAVHAASRRWLSF
Ga0311345_102324895	3300030688	Bog	FYIIDEWPNKSPEPTAVGAGSSAIAVHAASRRWLSFFR
Ga0311345_105208441	3300030688	Bog	FVLLQEVNMMPNKSPEPTAVGAGRSAVAVHIASRRWLSFFR
Ga0311345_106378403	3300030688	Bog	MFLIEKMQPNQSPEPTAVGAVRSAVAVHVASRRWLSF
Ga0170834_1097422121	3300031057	Forest Soil	MTKQANKSPEPTAVGAVSSAVAVYIASRRWLSFLKNE
Ga0170824_1088074541	3300031231	Forest Soil	VMTLLWPNKSPEPTRVGVLGSAFAGNVTGPGWLSFFR
Ga0265340_100205989	3300031247	Rhizosphere	MRRFIFVTDDVLPNQSPEPTAVGAVRSAIAVHVGSRRWLSFFR
Ga0302140_101637894	3300031261	Bog	SEDNKGMSRLVMPNKSPEPTAVGAVSSAIAVHVAGRRWLSFFR
Ga0302320_1009369111	3300031524	Bog	VTMMSNKSPEPTAVGAGSSAVAVRVESRRWLSFFR
Ga0302320_112094252	3300031524	Bog	MKMPPNKSPEPTAVGAGSSAVAVHVASRRWLSFFR
Ga0302319_104602401	3300031788	Bog	VDMTDPMPNKSPEPTAVGAVSSAIAVHVTSRRWLSFFR
Ga0302319_106111303	3300031788	Bog	MDLNFIKWPNQSPEPTAVGACSSAVAVHAASRRWLSFFR
Ga0316220_10923251	3300031884	Freshwater	QIVMTMTPNKSPEPTAVGAVRSAVAVHAVSRRWLSFFR
Ga0316222_10193404	3300032561	Freshwater	MILDLHTMLPNKSPEPTADSAGSSASRATRFVRLWLSFFR
Ga0335083_104209192	3300032954	Soil	GTVTFDICISMTPPNKSPEPTAVGAVSPLSRAAVSGRRWLSFFR
Ga0326728_100171137	3300033402	Peat Soil	MKMTPNKSPESTAVGAFRSAIAVQVAVQRGLSFLR
Ga0326727_1004390815	3300033405	Peat Soil	MSCIDVLPNKSPEPTAVGAVSSAIAVHVASRRWLSFLR
Ga0326727_100749939	3300033405	Peat Soil	MDMTMLPNKSPEPTAVGAVSSAVAVRVTGRRWLSFLR
Ga0370492_0078375_1249_1353	3300034282	Untreated Peat Soil	MTVWPNKSPESTAVGAGSSAIAVHVASRRWLSFFR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign