Metagenome / Metatranscriptome Family F068187

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068187
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	43 residues
Representative Sequence	ERYEFSFGGLSPGEHTVAVRAYDRFENVGSAKTTFTVPAAKP
Number of Associated Samples	96
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.40 %
% of genes from short scaffolds (< 2000 bps)	93.60 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.800 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (31.200 % of family members)
Environment Ontology (ENVO)	Unclassified (34.400 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.400 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.57% Coil/Unstructured: 71.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF07238	PilZ	59.20
PF00291	PALP	14.40
PF03648	Glyco_hydro_67N	1.60
PF00135	COesterase	0.80
PF07488	Glyco_hydro_67M	0.80
PF02401	LYTB	0.80
PF04055	Radical_SAM	0.80
PF12681	Glyoxalase_2	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG3661	Alpha-glucuronidase	Carbohydrate transport and metabolism [G]	2.40
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	1.60
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.80 %
Unclassified	root	N/A	3.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.80 %
Unclassified	root	N/A	3.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.80 %
Unclassified	root	N/A	3.20 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	81.60 %
Unclassified	root	N/A	3.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.40 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.40 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.20 %
Unclassified	root	N/A	3.20 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.60 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.20 %
Unclassified	root	N/A	3.20 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.60 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.20 %
Unclassified	root	N/A	3.20 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.60 %
Unclassified	root	N/A	3.20 %
Vibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio	0.80 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.60 %
Unclassified	root	N/A	3.20 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.80 %
Vibrio oreintalis group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio oreintalis group	0.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.60 %
Unclassified	root	N/A	3.20 %
Vibrio orientalis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio oreintalis group → Vibrio orientalis	0.80 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.80 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105512630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1608	Open in IMG/M
3300000789\|JGI1027J11758_11950173	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300001593\|JGI12635J15846_10144116	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300002908\|JGI25382J43887_10294467	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300003505\|JGIcombinedJ51221_10441284	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300004091\|Ga0062387_101689026	Not Available	514	Open in IMG/M
3300004092\|Ga0062389_104244971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio oreintalis group → Vibrio orientalis	539	Open in IMG/M
3300004633\|Ga0066395_10631465	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005174\|Ga0066680_10314341	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300005555\|Ga0066692_10091913	All Organisms → cellular organisms → Bacteria	1783	Open in IMG/M
3300005555\|Ga0066692_10296360	All Organisms → cellular organisms → Bacteria → Acidobacteria	1025	Open in IMG/M
3300005561\|Ga0066699_10630439	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300005569\|Ga0066705_10742827	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300005586\|Ga0066691_10015933	All Organisms → cellular organisms → Bacteria → Proteobacteria	3636	Open in IMG/M
3300005712\|Ga0070764_10661795	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	641	Open in IMG/M
3300006162\|Ga0075030_100737095	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300006162\|Ga0075030_100844382	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300006163\|Ga0070715_10224711	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300006176\|Ga0070765_100571780	All Organisms → cellular organisms → Bacteria → Proteobacteria	1065	Open in IMG/M
3300006176\|Ga0070765_100623121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017	Open in IMG/M
3300006176\|Ga0070765_100786464	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	899	Open in IMG/M
3300006176\|Ga0070765_101508845	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300006804\|Ga0079221_10037429	All Organisms → cellular organisms → Bacteria → Acidobacteria	2100	Open in IMG/M
3300006806\|Ga0079220_10806216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	711	Open in IMG/M
3300006903\|Ga0075426_11127594	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300007255\|Ga0099791_10267596	All Organisms → cellular organisms → Bacteria → Acidobacteria	812	Open in IMG/M
3300007258\|Ga0099793_10618584	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300009012\|Ga0066710_104663378	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300009038\|Ga0099829_10202124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1608	Open in IMG/M
3300009038\|Ga0099829_11160131	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300009088\|Ga0099830_10204320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1547	Open in IMG/M
3300009088\|Ga0099830_10794281	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300009088\|Ga0099830_11381369	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300009088\|Ga0099830_11813228	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300009089\|Ga0099828_11861064	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300009137\|Ga0066709_101673994	Not Available	905	Open in IMG/M
3300009137\|Ga0066709_103391368	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300010048\|Ga0126373_12305572	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300010304\|Ga0134088_10240954	All Organisms → cellular organisms → Bacteria → Acidobacteria	869	Open in IMG/M
3300010335\|Ga0134063_10059372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1684	Open in IMG/M
3300010358\|Ga0126370_10388390	All Organisms → cellular organisms → Bacteria → Acidobacteria	1142	Open in IMG/M
3300010360\|Ga0126372_10427099	All Organisms → cellular organisms → Bacteria → Acidobacteria	1219	Open in IMG/M
3300010360\|Ga0126372_12497755	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300010376\|Ga0126381_102358947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300011269\|Ga0137392_10401301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1138	Open in IMG/M
3300011269\|Ga0137392_10802756	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300011269\|Ga0137392_10870546	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300011270\|Ga0137391_11429576	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300011271\|Ga0137393_11158959	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300011271\|Ga0137393_11324004	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300012096\|Ga0137389_10926156	All Organisms → cellular organisms → Bacteria → Acidobacteria	748	Open in IMG/M
3300012096\|Ga0137389_11088104	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300012096\|Ga0137389_11741450	All Organisms → cellular organisms → Bacteria → Acidobacteria	519	Open in IMG/M
3300012096\|Ga0137389_11823538	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300012205\|Ga0137362_11103353	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300012210\|Ga0137378_10786275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300012361\|Ga0137360_11320475	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300012361\|Ga0137360_11486904	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012361\|Ga0137360_11513682	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300012582\|Ga0137358_10501033	All Organisms → cellular organisms → Bacteria → Acidobacteria	818	Open in IMG/M
3300012918\|Ga0137396_11171181	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300012925\|Ga0137419_11866572	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300012930\|Ga0137407_11095900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300012930\|Ga0137407_12160758	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300012944\|Ga0137410_11883846	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300012964\|Ga0153916_10564846	All Organisms → cellular organisms → Bacteria → Acidobacteria	1212	Open in IMG/M
3300012972\|Ga0134077_10329808	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300015053\|Ga0137405_1264794	All Organisms → cellular organisms → Bacteria → Acidobacteria	1064	Open in IMG/M
3300015053\|Ga0137405_1383651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1496	Open in IMG/M
3300015054\|Ga0137420_1191085	All Organisms → cellular organisms → Bacteria → Acidobacteria	1999	Open in IMG/M
3300015054\|Ga0137420_1312213	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300015193\|Ga0167668_1075612	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300015241\|Ga0137418_10098457	All Organisms → cellular organisms → Bacteria → Acidobacteria	2633	Open in IMG/M
3300015264\|Ga0137403_10685273	All Organisms → cellular organisms → Bacteria → Acidobacteria	886	Open in IMG/M
3300017955\|Ga0187817_10755848	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300018012\|Ga0187810_10154254	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300018088\|Ga0187771_10737679	Not Available	835	Open in IMG/M
3300020199\|Ga0179592_10258855	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300020580\|Ga0210403_10704142	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300020582\|Ga0210395_10800031	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300021046\|Ga0215015_11067339	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300021086\|Ga0179596_10161576	All Organisms → cellular organisms → Bacteria → Acidobacteria	1072	Open in IMG/M
3300021181\|Ga0210388_10165863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1924	Open in IMG/M
3300021181\|Ga0210388_10249887	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300021403\|Ga0210397_11392334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300021420\|Ga0210394_10969821	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300021474\|Ga0210390_10532952	All Organisms → cellular organisms → Bacteria → Acidobacteria	988	Open in IMG/M
3300021477\|Ga0210398_10933160	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300021478\|Ga0210402_11266037	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300021559\|Ga0210409_10858722	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300021559\|Ga0210409_11043941	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300021559\|Ga0210409_11379171	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300022726\|Ga0242654_10205268	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300024290\|Ga0247667_1068882	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300026318\|Ga0209471_1111148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300026323\|Ga0209472_1191424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	714	Open in IMG/M
3300026334\|Ga0209377_1042503	All Organisms → cellular organisms → Bacteria	2082	Open in IMG/M
3300026527\|Ga0209059_1338854	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300026529\|Ga0209806_1263564	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300027674\|Ga0209118_1155736	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300027729\|Ga0209248_10051142	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1267	Open in IMG/M
3300027846\|Ga0209180_10200827	All Organisms → cellular organisms → Bacteria → Acidobacteria	1149	Open in IMG/M
3300027911\|Ga0209698_11016349	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300028021\|Ga0265352_1014826	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	534	Open in IMG/M
3300028780\|Ga0302225_10031750	All Organisms → cellular organisms → Bacteria → Acidobacteria	2648	Open in IMG/M
3300028906\|Ga0308309_10268286	All Organisms → cellular organisms → Bacteria → Acidobacteria	1434	Open in IMG/M
3300028906\|Ga0308309_10637222	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300028906\|Ga0308309_10755636	All Organisms → cellular organisms → Bacteria → Acidobacteria	845	Open in IMG/M
3300028906\|Ga0308309_10850746	All Organisms → cellular organisms → Bacteria → Acidobacteria	792	Open in IMG/M
3300030007\|Ga0311338_10037336	All Organisms → cellular organisms → Bacteria → Acidobacteria	6690	Open in IMG/M
3300030763\|Ga0265763_1013137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300030862\|Ga0265753_1022495	All Organisms → cellular organisms → Bacteria → Acidobacteria	956	Open in IMG/M
3300030991\|Ga0073994_12134361	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300031231\|Ga0170824_107179308	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300031233\|Ga0302307_10105068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1477	Open in IMG/M
3300031753\|Ga0307477_10376777	All Organisms → cellular organisms → Bacteria → Acidobacteria	974	Open in IMG/M
3300031754\|Ga0307475_10602769	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300031910\|Ga0306923_12149002	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300031947\|Ga0310909_10456622	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1072	Open in IMG/M
3300031962\|Ga0307479_10357499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1444	Open in IMG/M
3300032205\|Ga0307472_100245307	All Organisms → cellular organisms → Bacteria → Acidobacteria	1400	Open in IMG/M
3300032205\|Ga0307472_102516684	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300033004\|Ga0335084_10069779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3639	Open in IMG/M
3300033808\|Ga0314867_126187	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.20%
Host-Associated	Host-Associated	0.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.00%
Aquatic	Environmental → Aquatic	7.20%
Plants	Host-Associated → Plants	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.60%
Freshwater	Environmental → Aquatic → Freshwater	4.80%
Sediment	Environmental → Aquatic → Sediment	2.40%
Peat	Environmental → Terrestrial → Peat	2.40%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.20%
Loam	Environmental → Terrestrial → Soil → Loam	12.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.40%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.20%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.40%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	31.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.40%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.00%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.20%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.40%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.40%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.40%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.60%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.80%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.80%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028021	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033808	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1055126304	3300000364	Soil	ERYEFTLLTGLSPGEHSIAVRAYDRFENVGSAKTTFTVPKP*
JGI1027J11758_119501733	3300000789	Soil	AALAPGEHTIAVRAYDHFQNVGSAKITFQVPPVK*
JGI12635J15846_101441161	3300001593	Forest Soil	RYVLGLPALAAGEHTLAVRAYDRFENIGAAKITFTVAAKP*
JGI25382J43887_102944671	3300002908	Grasslands Soil	PVEHYNFGFPALSPGEHTIAVRAYDRFENVGSAKTTFTVPAAKP*
JGIcombinedJ51221_104412841	3300003505	Forest Soil	EFSTGELGPGEHSIAVRAYDHFDNIGSAKTLLTVPPAKP*
Ga0062387_1016890262	3300004091	Bog Forest Soil	GNISDSLEERYEFSLSELSPGEHSIAVRAFDHFDNVGSAKTVVNVPTAKP*
Ga0062389_1042449711	3300004092	Bog Forest Soil	GNISDSLEERYEFSLSELSPGEHSIAVRAYDHFDNVGSAKTVVNVPPAKQ*
Ga0066395_106314652	3300004633	Tropical Forest Soil	YQSGMPRLSTGEHTIAVRAYDRFQNVGSAKITIQVPAGK*
Ga0066680_103143413	3300005174	Soil	DTGISDDSVEHYVFGLPALTPGEHTIAVRAYDHFENVGSAKTVFTVPTPKP*
Ga0066692_100919131	3300005555	Soil	VEHYNFGLPPLPPGEHSLAARAYDQFENVGSAKITFVAAASKP*
Ga0066692_102963601	3300005555	Soil	ISDDSVEHYVFGLPALTPGEHTIAVRAYDHFENVGSAKTVFTVPTPKP*
Ga0066699_106304391	3300005561	Soil	GIAAVSPGEHTLAVRVYDQFENVGSAKLTFTIPKP*
Ga0066705_107428271	3300005569	Soil	RLTVGLSPGEHTIAVRAYDRFENVGSGKTTFTVPAAKP*
Ga0066691_100159331	3300005586	Soil	ERYEFSFGGLSPGEHTVAVRAYDRFENVGSAKTTFTVPAAKP*
Ga0070764_106617951	3300005712	Soil	QSENYEFTLGNIAPGEHTIAVRVYDRFENVGSAKTTMNAPAAKP*
Ga0075030_1007370951	3300006162	Watersheds	HYEFGVADLRPGEHTIAVRAYDRFENVGSAKTIAVVPGVR*
Ga0075030_1008443821	3300006162	Watersheds	APEEHYQILLERLSAGEHTIAVRVYDKFENVGSAKTTVTVPAAKM*
Ga0070715_102247111	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	EEHYQITLHNLPLASGEHTIAVRAYDRFENVGSAKTTTNVPTTKP*
Ga0070765_1005717801	3300006176	Soil	GAVSDSLEERYEFTLPEALSPGEHSIAVRAYDHFENVGSAKTIVNVPGK*
Ga0070765_1006231211	3300006176	Soil	DSLEERYEFSLGELSPGEHTIAVRAYDHFDNVGSAKTVVNVPPAKP*
Ga0070765_1007864643	3300006176	Soil	VSDALSENYEFPLANLASGEHTIAVRAYDRFENVGSAKTTFNVAESKP*
Ga0070765_1015088451	3300006176	Soil	GSVSDSLEERYEFTPAGEFSHGEHSIAVRAYDHFENVGSAKTVVNIPGGKQ*
Ga0079221_100374291	3300006804	Agricultural Soil	EERYEFSVSNSSPGEHTVVVRAYDRFENVGSAKTTVNVPAKP*
Ga0079220_108062161	3300006806	Agricultural Soil	IPAVSPGEHTLAFRVYDRFENVGTAKITFNVPASKP*
Ga0075426_111275942	3300006903	Populus Rhizosphere	PPLASGEHTIAVRVYDRFQNVGSGKITIQVPAAK*
Ga0099791_102675961	3300007255	Vadose Zone Soil	LPSLPPGEHIIAVRAYDRFENVGSAKTTFTVPAAKP*
Ga0099793_106185841	3300007258	Vadose Zone Soil	AISDALVEHYNIGLPSLPPGEHTIAVRAYDRFENVGSAKRTFTVPAAKP*
Ga0066710_1046633781	3300009012	Grasslands Soil	SLEEHYEFRLTVGLSPGEHTIAVRAYDRFENVGSAKTTFTVPAAKP
Ga0099829_102021241	3300009038	Vadose Zone Soil	LPALTPGEHTIAVRAYDRLENVGSAKTIFTVPLAKP*
Ga0099829_111601311	3300009038	Vadose Zone Soil	RALSPGEHTVAVRAYDRFDNVGSAKITMTVPAAKP*
Ga0099830_102043201	3300009088	Vadose Zone Soil	SGGISDAPEERYEFSLNGLSPGEHTIAVRAYDKFENVGSAKTTVAVPAPKM*
Ga0099830_107942812	3300009088	Vadose Zone Soil	GSALGSEHTVAVRAYDRFENVGSAKTTVTVPAAKP*
Ga0099830_113813692	3300009088	Vadose Zone Soil	YEISLSGLASGEHTIAVRAYDRFENVGSAKTTFTVPTAKP*
Ga0099830_118132282	3300009088	Vadose Zone Soil	YVFGLPALPPGEHTIAVRAYDHFENVGSTKTVFTVPTPKP*
Ga0099828_118610641	3300009089	Vadose Zone Soil	ALVEHYDFGLPALTPGEHTIAVRAYDRFENVGSAKTIFTVRPAKL*
Ga0066709_1016739942	3300009137	Grasslands Soil	RPLAPGEHTLAVRAYDRFENVGSAKFTFVVAGKP*
Ga0066709_1033913682	3300009137	Grasslands Soil	FRLTVGLSPGEHTIAVRAYDRFENVGSGKTTFTVPAAKP*
Ga0126373_123055722	3300010048	Tropical Forest Soil	SAISPGEHTLAVRVYDRFENVGTAKITFTVPASKP*
Ga0134088_102409542	3300010304	Grasslands Soil	FGFPALAPGEHTIAVRAYDHFENVGSAKTTFTVPAPKP*
Ga0134063_100593724	3300010335	Grasslands Soil	GVPALTPGEHTLAVRVYDHFENVGSAKITFTVPASKP*
Ga0126370_103883903	3300010358	Tropical Forest Soil	GDGPVEQYHFGLPALSPGEHTLSVRVYDHFENVGAAKITFTVPAPKP*
Ga0126372_104270991	3300010360	Tropical Forest Soil	PQLAPGEHTLAVRAYDRFENVGTAKITFVVAGKP*
Ga0126372_124977551	3300010360	Tropical Forest Soil	FGIPALSPGEHTLAVRVYDRFENVGSAKVTFVVPRAGGK*
Ga0126381_1023589471	3300010376	Tropical Forest Soil	TVEPAPGEHTIVVRVYDRFENVGSGKTTIAVGTSKP*
Ga0137392_104013011	3300011269	Vadose Zone Soil	ALVEHYDFGLPALTPGEHTIAGRAYDRFENVGSAKITFTVSATKP*
Ga0137392_108027562	3300011269	Vadose Zone Soil	DLAGLSSREHTIAVRAYDHFENVGSAKTTFTVASAKP*
Ga0137392_108705462	3300011269	Vadose Zone Soil	FSLPVLGPGEHIIAVRAYDRFENVGSAKTTFTVPLAKP*
Ga0137391_114295761	3300011270	Vadose Zone Soil	YEFTLGDLAGLSSREHTIAVRAYDHFENVGSAKTTFTVPSAKP*
Ga0137393_111589592	3300011271	Vadose Zone Soil	APEERYEFSLNGLSPGEHTIAVRAYDKFENVGSAKTTVAVPAPKM*
Ga0137393_113240041	3300011271	Vadose Zone Soil	GGDWIIVAPTGAISDAPEERYEFSVSLPEGSAPGSEHTIAVRAYDHFENVGSAKTTVKVP
Ga0137389_109261561	3300012096	Vadose Zone Soil	HYDFGLPALTPGEHTIAVRAYDRLENVGSAKTIFTVPPAKL*
Ga0137389_110881042	3300012096	Vadose Zone Soil	APTGAISDAPEERYEFSVSLPEGSAPGSEHTIAVRAYDHFENVGSAKTTVKVP*
Ga0137389_117414501	3300012096	Vadose Zone Soil	ISDAPEERYEFSLSNLGPGEHTIAVRAYDKFENVGSAKTTVSLPAPKT*
Ga0137389_118235381	3300012096	Vadose Zone Soil	APEEHYEFTPGVLLPGEHTIAVRAFDRFDNVGSAKTTVAVRESKP*
Ga0137362_111033532	3300012205	Vadose Zone Soil	MGLPSLPPGEHIIAVRAYDRFENVGSAKITFTVPAGKP*
Ga0137378_107862752	3300012210	Vadose Zone Soil	APDGAISDALVEHYNFGLPPLPPGEHSLAVRAYDQFENVGSAKITFVAAPSKP*
Ga0137360_113204752	3300012361	Vadose Zone Soil	EERYDFSLNLGLDPGEHTVAVRAYDHFDNVGSAKTSINVPTAKP*
Ga0137360_114869042	3300012361	Vadose Zone Soil	GPPSLPPGDHILAVRAYDRFENVGSAKITFTVPAGRP*
Ga0137360_115136821	3300012361	Vadose Zone Soil	ALVEHYNTSLPSRPPGEHTIAVRAYDRFENVGSAKTTFTVPVAKP*
Ga0137358_105010331	3300012582	Vadose Zone Soil	IGLPSVPPGEHTIAVRAYDRFENVGSAKTTFTVPAAKP*
Ga0137396_111711812	3300012918	Vadose Zone Soil	ALVEHYDFGLPSLTPGEHTIAVRVYDRFENVGSGKTTFTVPAAKP*
Ga0137419_118665721	3300012925	Vadose Zone Soil	HYDFGFPALPPGEHTLAVRAYDRFENVGTAKTTFTAPAAKP*
Ga0137407_110959002	3300012930	Vadose Zone Soil	ILAAPVGGISDALEEHYEFRLTMELSPGEHTIAARAYDRFENVGSAKTTFIVPKAKP*
Ga0137407_121607582	3300012930	Vadose Zone Soil	IAPALTEREHTIAVRAYDRFENVGSAKTSFVVPTGKL*
Ga0137410_118838461	3300012944	Vadose Zone Soil	LVEHYNLSLPSLPPGEHTIAVRAYDRFENVGSAKTTFTVPAAKP*
Ga0153916_105648461	3300012964	Freshwater Wetlands	HYEFSLSGLGAGEHTIAVRAYDRFENVGSAKITFTVPTTKT*
Ga0134077_103298082	3300012972	Grasslands Soil	TVGLSPGEHTIAVRAYDRFENVGSGKTTFTVPAAKP*
Ga0137405_12647941	3300015053	Vadose Zone Soil	DWILVAPAGNISDALEERYAFSLAGIAPPGEHTVAVRAYDHFDNVGSAKTTINISGTKP*
Ga0137405_13836513	3300015053	Vadose Zone Soil	DALVEHYDIGLPTLPPGEHTIAVRAYDRFENVGSEKTTFTVPASKP*
Ga0137420_11910854	3300015054	Vadose Zone Soil	LGLPALAPGEHTIAVRAYDRFENVGSAKITFTVPAAKL*
Ga0137420_13122131	3300015054	Vadose Zone Soil	ALVEHYDFGLPSLPSLTPGEHTIAVRVYDRFENVGSGKTTFTVPAAKP*
Ga0167668_10756121	3300015193	Glacier Forefield Soil	SISDAPEEKYEFTINDLSAGEHTIAVRAYDHFENVGSAKTTVTVPKSNHH*
Ga0137418_100984575	3300015241	Vadose Zone Soil	ERYEIPLSGLGPGEHAISVRAYDRFENVGSAKTIVIVPAAKP*
Ga0137403_106852731	3300015264	Vadose Zone Soil	FALPPGEHLIAVRAYDRFENVGSAKVTFTVQAVKP*
Ga0187817_107558481	3300017955	Freshwater Sediment	EERYEFTLGTGVAPGEHTISVRAFDRFENVGSAKTTFTVPGAKP
Ga0187810_101542543	3300018012	Freshwater Sediment	RYEFLLSNLGPGEHTIAVRAYDKFENVGSAKATVSLPAPKV
Ga0187771_107376792	3300018088	Tropical Peatland	EFTLRNLSAGEHTVAVRAYDQFENLTAAEVTFTVPAAKK
Ga0179592_102588553	3300020199	Vadose Zone Soil	GLTALPPGEHTIAVRAYDRFENVGSAKITFIVPATKP
Ga0210403_107041421	3300020580	Soil	MLSSLALREHTIAVRAFDRFENVGSAKLTFTIPNAKP
Ga0210395_108000311	3300020582	Soil	VSDAHEERYQMTLHDLPLASGEHTIAVRAYDRFENVGSAKTTTTIPTSNP
Ga0215015_110673393	3300021046	Soil	LVSPTGGISAAPDEHYELSLSNLGPGEHTIAVRAYDKFENVGSAKTTVSLPAPKT
Ga0179596_101615763	3300021086	Vadose Zone Soil	PIEKYSFGLPVLTAGEHTIAVRAYDHFENVGSAKTTFSVPAAKP
Ga0210388_101658634	3300021181	Soil	SLEERYEFTLPEALSPGEHSIAVRAYDHFENVGSAKTIVNIPGK
Ga0210388_102498874	3300021181	Soil	QPLTKLVEHTIAVRAYDRFENVGSAKTVTTIPTTKP
Ga0210397_113923341	3300021403	Soil	PAGNISDSLEERYEFSLGELSPGEHTIAVRAYDHFDNVGSAKTVVNVSIAKP
Ga0210394_109698211	3300021420	Soil	FEKLTAGEHTIAVRAYDRFENVGSAKITTTVSNSKP
Ga0210390_105329522	3300021474	Soil	EDYEFSVTDLRPGEHTIAVRAYDRFENVGSAKTVVTIPSAKP
Ga0210398_109331602	3300021477	Soil	ISDAPDEHYEFTLSSLSSGEHTIAVRAYDRFENAGSSKTTINIPARKP
Ga0210402_112660372	3300021478	Soil	FSITAGIAPGEHTIAVRAYDHFDNVGSAKTTINIPAAKP
Ga0210409_108587221	3300021559	Soil	EEHYEFTISDPSAGEHTIAVRAYDRFENVGSAKTTVTVTSSTRR
Ga0210409_110439412	3300021559	Soil	EHYDFGLPALPPGEHTFAVRAYDRFENVGSAKITFTVPNAKP
Ga0210409_113791712	3300021559	Soil	IGNVSDALDEKYEFTLSDLAPGEHTIAVRAYDRFENVGSAKIATTTRAARP
Ga0242654_102052681	3300022726	Soil	INLPASAPHETEHTIAVRVYDRFENVGSAKTTVKVP
Ga0247667_10688821	3300024290	Soil	TSGISDAPDEHYEFTLSNLASGEHTIAVRAYDRFENIGSAKTTVVVPASKP
Ga0209471_11111481	3300026318	Soil	TSRISDSPEERYEISLSGLGPGEHTISVRAYDRFENGGSAKTIVTVPAAKP
Ga0209472_11914242	3300026323	Soil	EISLSSLGPGEHVISVRAYDRFENVGSAKTIVTVPAAKP
Ga0209377_10425031	3300026334	Soil	YNFGLPPLPPGEHSLAARAYDQFENVGSAKITFVAAASKP
Ga0209059_13388542	3300026527	Soil	EEHYEFRLTVGLSPGEHTIAVRAYDRFENVGSGKTTFTVPAAKP
Ga0209806_12635642	3300026529	Soil	DSLEEHYEFRLTVGLSPGEHTIAVRAYDRFENVGSGKTTFTVPAAKP
Ga0209331_10666401	3300027603	Forest Soil	ISDAPTEKYDFTLPDFGPGEHTISVRVFDRFENVGSAKATVRR
Ga0209118_11557362	3300027674	Forest Soil	DFSLASLSPGEHTVAVRAYDRFDNVGSGKATITVPAAKP
Ga0209248_100511423	3300027729	Bog Forest Soil	RYEFTITEPQPGEHTVAVRAYDRFENVGSAKTTFTVPAGKK
Ga0209180_102008271	3300027846	Vadose Zone Soil	EHYDFGLPALTPGEHTIAVRAYDRLENVGSAKTIFTVPPAKL
Ga0209698_110163492	3300027911	Watersheds	HYEFGVADLRPGEHTIAVRAYDRFENVGSAKTIAVVPGVR
Ga0265352_10148261	3300028021	Soil	DAPSENYEFTLGSLTPGEHTIAVRAYDRFENVGSAKTTFNVVESKP
Ga0302225_100317501	3300028780	Palsa	TVEVPRGEHTIAVRAYDHFENLGNAKTTIVVPTAKP
Ga0308309_102682863	3300028906	Soil	SDSLEERYEFSLSELSPGEHTIAIRAYDHFDNVGSAKTVVNAPPAKP
Ga0308309_106372221	3300028906	Soil	ISDSLEERYEFSLGELSPGEHTIAVRAYDHFDNVGSAKTVVNVPPAKP
Ga0308309_107556361	3300028906	Soil	LEERYEFSTGELSPGEHSIAVRAYDHFDNIGSAKTLLTVPPAKP
Ga0308309_108507461	3300028906	Soil	LEERYEFTLPEALSPGEHSIAVRAYDHFENVGSAKTIVNVPGK
Ga0311338_100373365	3300030007	Palsa	AEHYDFTTAPVTGAREHTIAVRAYDRFDNVGSAKTVLTLPAKP
Ga0265763_10131371	3300030763	Soil	PEEYYEFGVTDLRPGEHTIAVRAYDRFENVGGAKTVVTIPSAKP
Ga0265753_10224953	3300030862	Soil	YEFTLGSLAPGEHTIAVRAYDRFENVGSAKNTFNVTEAKP
Ga0073994_121343612	3300030991	Soil	GISDALVERYEFSLPSLTPGEHTLAVRVYDRFENVGSGKTTFTMPAAKP
Ga0170824_1071793082	3300031231	Forest Soil	AGNISDAPEEHYEFTISDQSAGEHTIAARAYDRFENVGSAKTTVTVTSSNHR
Ga0302307_101050683	3300031233	Palsa	SHISDAPEERYDFTVSDLRPGEHTIAVRAYDQFDNVGSAKTIAVVPAAKP
Ga0307477_103767771	3300031753	Hardwood Forest Soil	YDFGLPALPPGEHTLAVRAYDRFENVGSAKITFTVPNAKP
Ga0307475_106027692	3300031754	Hardwood Forest Soil	DALEERYDFSITAGIAPGEHTIAVRAYDHFDNVGSAKTTINISAAKP
Ga0306923_121490022	3300031910	Soil	ENYGQILRGLTPGEHTISVRAYDRFENVGAEKTTIHIPTKS
Ga0310909_104566223	3300031947	Soil	HGLMPGEHTVAVRAYDRFENVGSGKTTFTVAGTKN
Ga0307479_103574991	3300031962	Hardwood Forest Soil	PTGGISDAPEERYEFSLSNLGPGEHTIAVRAYDKFENVGSAKTSVAVPAPKM
Ga0307472_1002453071	3300032205	Hardwood Forest Soil	YEFRLTMGLSAGEHTIAVRAFDRFENVGSAKTTFTIPSTKP
Ga0307472_1025166842	3300032205	Hardwood Forest Soil	MGLPSLPPGEHIISVRAYDRFENVGSAKITFTVPAGKP
Ga0335084_100697794	3300033004	Soil	LPLAAPGEHTIAVRVYDRFQNIGSAKTTIQVATQK
Ga0314867_126187_443_589	3300033808	Peatland	LNDALEEKYEITLTNVAPGEHTLAVRAFDRFENAGSAKKVFSVAAAKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068187

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences