Metagenome / Metatranscriptome Family F068054

Overview

Basic Information

• Family ID: F068054
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 125
• Average Sequence Length: 51 residues
• Representative Sequence: MREYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEQVPEVPRSPYNILVVERVY
• Number of Associated Samples: 105
• Number of Associated Scaffolds: 125

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 19.63 %
• % of genes near scaffold ends (potentially truncated): 41.60 %
• % of genes from short scaffolds (< 2000 bps): 74.40 %
• Associated GOLD sequencing projects: 101
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (84.800 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (9.600 % of family members)
• Environment Ontology (ENVO): Unclassified (19.200 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (56.800 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 14.81%
  Coil/Unstructured: 85.19%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF01709	Transcrip_reg	8.00
PF13302	Acetyltransf_3	3.20
PF01557	FAA_hydrolase	2.40
PF01694	Rhomboid	2.40
PF01174	SNO	2.40
PF03575	Peptidase_S51	2.40
PF04020	Phage_holin_4_2	2.40
PF07883	Cupin_2	1.60
PF02371	Transposase_20	1.60
PF01979	Amidohydro_1	1.60
PF06224	HTH_42	1.60
PF03793	PASTA	0.80
PF13544	Obsolete Pfam Family	0.80
PF01544	CorA	0.80
PF09851	SHOCT	0.80
PF08241	Methyltransf_11	0.80
PF00082	Peptidase_S8	0.80
PF01066	CDP-OH_P_transf	0.80
PF01053	Cys_Met_Meta_PP	0.80
PF12773	DZR	0.80
PF00563	EAL	0.80
PF00565	SNase	0.80
PF00589	Phage_integrase	0.80
PF13189	Cytidylate_kin2	0.80
PF02607	B12-binding_2	0.80
PF09130	DUF1932	0.80
PF10944	DUF2630	0.80
PF13519	VWA_2	0.80
PF00072	Response_reg	0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG0217	Transcriptional and/or translational regulatory protein YebC/TACO1	Translation, ribosomal structure and biogenesis [J]	8.00
COG0118	Imidazoleglycerol phosphate synthase glutamine amidotransferase subunit HisH	Amino acid transport and metabolism [E]	2.40
COG0311	Pyridoxal 5'-phosphate synthase subunit PdxT (glutamine amidotransferase)	Coenzyme transport and metabolism [H]	2.40
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	2.40
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	2.40
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.60
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	1.60
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.80
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.80
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.80
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.80
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.80
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.80
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.80
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.80
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.80
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.80
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.80
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.80
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.80
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.80
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.80
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.80
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.80
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.80
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.80
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.80

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.80 %
Unclassified	root	N/A	15.20 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.80 %
Unclassified	root	N/A	15.20 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.80 %
Unclassified	root	N/A	15.20 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.80 %
Unclassified	root	N/A	15.20 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	70.40 %
Unclassified	root	N/A	15.20 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	62.40 %
Unclassified	root	N/A	15.20 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.60 %

Level 7

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	58.40 %
Unclassified	root	N/A	15.20 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.80 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.80 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.40 %
Unclassified	root	N/A	15.20 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.80 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.80 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2189573000|GPBTN7E02GI3UC	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530
3300000597|AF_2010_repII_A1DRAFT_10082299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	805
3300003324|soilH2_10257896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1068
3300004153|Ga0063455_100780618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658
3300004479|Ga0062595_100845429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	762
3300004479|Ga0062595_101361515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	644
3300004633|Ga0066395_10125561	All Organisms → cellular organisms → Bacteria	1271
3300004633|Ga0066395_10415627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	761
3300005177|Ga0066690_10852205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	587
3300005179|Ga0066684_10022337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3316
3300005184|Ga0066671_10712589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	648
3300005187|Ga0066675_10766484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	727
3300005332|Ga0066388_100065379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3900
3300005332|Ga0066388_107966558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530
3300005338|Ga0068868_101755585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586
3300005366|Ga0070659_100715471	All Organisms → cellular organisms → Bacteria → Terrabacteria group	867
3300005434|Ga0070709_10007590	All Organisms → cellular organisms → Bacteria	5955
3300005436|Ga0070713_100264872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1572
3300005444|Ga0070694_100276560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1279
3300005454|Ga0066687_10817046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555
3300005467|Ga0070706_100128291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2366
3300005468|Ga0070707_102001095	All Organisms → cellular organisms → Bacteria → Terrabacteria group	547
3300005471|Ga0070698_100640619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1004
3300005537|Ga0070730_10002818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15778
3300005542|Ga0070732_10273996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1012
3300005552|Ga0066701_10629040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	651
3300005553|Ga0066695_10653232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	623
3300005563|Ga0068855_100573389	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1220
3300005614|Ga0068856_100145254	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2380
3300005764|Ga0066903_100721035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1763
3300005764|Ga0066903_103396833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	859
3300005843|Ga0068860_101778156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	638
3300005891|Ga0075283_1034137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	840
3300005891|Ga0075283_1084819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580
3300005898|Ga0075276_10152490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530
3300006028|Ga0070717_10072558	All Organisms → cellular organisms → Bacteria	2874
3300006028|Ga0070717_10269445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1508
3300006028|Ga0070717_10945561	All Organisms → cellular organisms → Bacteria	785
3300006175|Ga0070712_101490122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591
3300006804|Ga0079221_11012572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625
3300009137|Ga0066709_100944616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1259
3300010043|Ga0126380_10607651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	862
3300010048|Ga0126373_11857284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666
3300010152|Ga0126318_10579905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	585
3300010321|Ga0134067_10285335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632
3300010322|Ga0134084_10325150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	579
3300010337|Ga0134062_10175634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	965
3300010366|Ga0126379_10107997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2494
3300010396|Ga0134126_10356673	All Organisms → cellular organisms → Bacteria	1705
3300010396|Ga0134126_10530335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1354
3300010396|Ga0134126_12426890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	571
3300010398|Ga0126383_11994454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	668
3300010401|Ga0134121_11061991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	799
3300010401|Ga0134121_11263929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	741
3300011991|Ga0120153_1061015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	666
3300011992|Ga0120146_1023901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1119
3300012001|Ga0120167_1053731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	879
3300012008|Ga0120174_1004268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5480
3300012011|Ga0120152_1005181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6269
3300012206|Ga0137380_11052339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694
3300012210|Ga0137378_10772820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	872
3300012211|Ga0137377_10248393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1709
3300012211|Ga0137377_11196070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	690
3300012356|Ga0137371_10445251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1002
3300012357|Ga0137384_10364231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1197
3300012359|Ga0137385_11006446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	687
3300012372|Ga0134037_1140653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549
3300012683|Ga0137398_10774899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	669
3300012955|Ga0164298_10841552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661
3300012971|Ga0126369_11721615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716
3300012971|Ga0126369_12649796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586
3300012977|Ga0134087_10673254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545
3300013104|Ga0157370_11527408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	600
3300013105|Ga0157369_10338902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1562
3300013297|Ga0157378_10476010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1243
3300013307|Ga0157372_10626364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1253
3300013307|Ga0157372_10893406	All Organisms → cellular organisms → Bacteria	1031
3300013764|Ga0120111_1038266	All Organisms → cellular organisms → Bacteria	1247
3300013764|Ga0120111_1108584	Not Available	651
3300013766|Ga0120181_1095300	All Organisms → cellular organisms → Bacteria → Terrabacteria group	652
3300014157|Ga0134078_10465719	All Organisms → cellular organisms → Bacteria	580
3300014745|Ga0157377_10732043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722
3300014823|Ga0120170_1014525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2393
3300015371|Ga0132258_10875512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2267
3300015374|Ga0132255_105753225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525
3300017947|Ga0187785_10396171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	662
3300018431|Ga0066655_11062469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564
3300020070|Ga0206356_11355104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	685
3300020076|Ga0206355_1431753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619
3300024246|Ga0247680_1048838	All Organisms → cellular organisms → Bacteria → Terrabacteria group	615
3300025910|Ga0207684_11585621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530
3300025929|Ga0207664_10342189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1322
3300025929|Ga0207664_10642834	All Organisms → cellular organisms → Bacteria → Terrabacteria group	953
3300026315|Ga0209686_1165868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	638
3300026542|Ga0209805_1218517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	802
3300027773|Ga0209810_1000285	All Organisms → cellular organisms → Bacteria	130741
3300027857|Ga0209166_10016891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4602
3300028381|Ga0268264_11296184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	738
3300031231|Ga0170824_126319800	All Organisms → cellular organisms → Bacteria → Terrabacteria group	902
3300031771|Ga0318546_10712088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	706
3300031859|Ga0318527_10269186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	725
3300031939|Ga0308174_10147811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1746
3300031939|Ga0308174_11756884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533
3300032001|Ga0306922_10986399	All Organisms → cellular organisms → Bacteria	870
3300032174|Ga0307470_10240605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1188
3300032180|Ga0307471_100457502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1417
3300032261|Ga0306920_103663669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.00%
Host-Associated	Host-Associated	12.00%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.20%
Plants	Host-Associated → Plants	12.00%
Aquatic	Environmental → Aquatic	0.80%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.40%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.60%
Freshwater	Environmental → Aquatic → Freshwater	0.80%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.80%
Loam	Environmental → Terrestrial → Soil → Loam	19.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.20%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.60%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.80%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.40%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	9.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.20%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.60%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.80%

Habitat

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	9.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.60%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.00%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.20%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.20%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.40%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.60%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.60%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.80%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.80%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.80%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental
3300003324	Sugarcane bulk soil Sample H2	Environmental
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental
3300005898	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_405	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental
3300010082	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental
3300011991	Permafrost microbial communities from Nunavut, Canada - A34_65cm_12M	Environmental
3300011992	Permafrost microbial communities from Nunavut, Canada - A23_65cm_12M	Environmental
3300012001	Permafrost microbial communities from Nunavut, Canada - A24_80cm_12M	Environmental
3300012008	Permafrost microbial communities from Nunavut, Canada - A39_80cm_12M	Environmental
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental
3300012372	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental
3300013766	Permafrost microbial communities from Nunavut, Canada - A26_65cm_6M	Environmental
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated
3300015374	Col-0 rhizosphere combined assembly	Host-Associated
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental
3300024245	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK18	Environmental
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_06215130	2189573000	Grass Soil	LDGPVVMREYVYDVPDKEPVEGQELYLSDGSGPWRVNFREQVPEVPRSPYNILVVERIR
FE2_03556420	2189573003	Grass Soil	EPVEGQELYLSNGSGPWRVRLLEHVPGVPRSPYNILVVERVED
AF_2010_repII_A1DRAFT_100822991	3300000597	Forest Soil	MREYVYDVPEKEPAEGQELYLSNGSGPWRVLLLEKVPEVHRSPYNILVVERVY*
AL16A1W_100607233	3300000887	Permafrost	EGQELYLSDGSGPWRVTLREQVPGVPRSPYNILVVERVG*
AL16A1W_101071611	3300000887	Permafrost	EGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVKRVD*
soilH2_102578963	3300003324	Sugarcane Root And Bulk Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVTLVEKVPEVHRSPYNILVVE
Ga0063455_1007806182	3300004153	Soil	MREYVYDVPDREPVEGQELYLSNGSGPWRVSLLEMVPEVPRSPYNILVVERAD*
Ga0062595_1008454291	3300004479	Soil	VVLKEYIYDVPDKEPVEGQELYLSDGSGPWRVMLLEQVPEVPRSPYNILVVERVN*
Ga0062595_1013615152	3300004479	Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSFLENVPEQPRSPYN
Ga0066395_101255611	3300004633	Tropical Forest Soil	VMREYVYDVPDKEPAEGQELYLSNGSGPWRVLLLEKVPEVHRSPYNILVVERVH*
Ga0066395_104156273	3300004633	Tropical Forest Soil	DVPDKEPVEGQELYLSNGSGPWRVILCENVPGVPRSPYNILVVERVF*
Ga0066690_108522051	3300005177	Soil	YDVPDKEPVEGQELYLSNGSGPWRVSFLEHVPEQPRSPYNVLVVERVY*
Ga0066684_100223373	3300005179	Soil	MKEYVYDVPDKEPVEGQELYLSNGSGPWRVTLLEKVPEVPRSPYNILVVERVY*
Ga0066671_107125892	3300005184	Soil	PDKEPVEGQELYLSNGSGPWRVTLLEKVPEVPRSPYNILVVERVY*
Ga0066675_107664841	3300005187	Soil	YDVPDKEPVEGQELYLSNGSGPWRVIFLETVPDHPRSPYNILVVELVA*
Ga0066388_1000653795	3300005332	Tropical Forest Soil	MLMREYVYDVPDKEPVEGQELYLSNGSGPWRVVLLEKVPEVPLSPYNILVVESVY*
Ga0066388_1079665581	3300005332	Tropical Forest Soil	MREYVYDVPDKEPAEGQELYLSNGSGPWRVLLLEKVPEVHRSPYNILVVERVY*
Ga0070682_1009904151	3300005337	Corn Rhizosphere	EGQELYLSNGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0068868_1017555853	3300005338	Miscanthus Rhizosphere	VMREYIYDIPDKEPVEGQELYLSNGSGPWRVSYREQVPSLPRSPYNVLVVERVHM*
Ga0070659_1007154714	3300005366	Corn Rhizosphere	GPVVVKNYIYGVPDKEPVEGQELYLSNGSGPWRVRFLEHVPGVPRSPYNILVVERITP*
Ga0070709_100075905	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKEYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF*
Ga0070713_1002648723	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MREYIYDVPDKEPVVGQEFYLSNGSGPWRVIYLEQVPEQPRSPYNILVVERVF*
Ga0070694_1002765602	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSFLENVPEQPRSPYNVLVVERVYY*
Ga0066687_108170461	3300005454	Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSFLENVPEQPRSPYNVLVVERVY*
Ga0070706_1001282912	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MREYVYDVPDKEPVEGQELYLSNGSGPWRVTLMEKVPEVHRSPYNIIVVERAY*
Ga0070707_1020010951	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	YEVPDKEPVEGQELYLSDGSGPWRVSLREMVPEVPRSPYNVLVVERVD*
Ga0070698_1006406191	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VVMREYVYDVPDKEPVEGQELYLSNGSGPWRVTLMEKVPEVHRSPYNIIVVERAY*
Ga0070730_100028184	3300005537	Surface Soil	MRDYVYNVPEKEPVEGQELYLSNGTGPWRVCYLEHAPEQYRSPYNVLVVERLE*
Ga0070732_102739961	3300005542	Surface Soil	YNVPEKEPVEGQELYLSNGTGPWRVCYLEHAPEQYRSPYNVLVVERLE*
Ga0066701_106290401	3300005552	Soil	DYVYDVPDKEPAEGQELYLSNGSGPWRVLLLEKVPDVHRSPYNVLVVERVY*
Ga0066695_106532321	3300005553	Soil	VMREYVNDVPDKEPAEGQEPYLSDGSGPWHVILLENVPEQARSPYNILVVERVA*
Ga0068855_1005733892	3300005563	Corn Rhizosphere	MKNYIYGVPDKEPVEGQELYLSNGSGPWRVRFLEHVPGVPRSPYNILVVERVEDY*
Ga0068856_1001452541	3300005614	Corn Rhizosphere	LYLSNGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0066903_1007210355	3300005764	Tropical Forest Soil	MREYVYDVPDKEPAEGQELYLSDGSGPWRVTRLEWVPEVYQSPYNILVVESVS*
Ga0066903_1033968333	3300005764	Tropical Forest Soil	MQEYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEQVPEVPLSPYNILVVERI*
Ga0068860_1017781562	3300005843	Switchgrass Rhizosphere	DGPLVMREYVYEVPDKEPVEGQELYLSNGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0075283_10341371	3300005891	Rice Paddy Soil	GPVVLTDYFYDIPDKEPVEGQELYLSDGSGPWRVRFLQQVPDNVRSPDNILVVERIG*
Ga0075283_10848192	3300005891	Rice Paddy Soil	MREYVYDVPGKEPVEGQEIYLSNGSGPWRVCLREQVPDLPRSPYNILVV
Ga0075276_101524902	3300005898	Rice Paddy Soil	DGPVVLKEYVYDVPDKEPVEGQELYLSDGSGPWRVTLLENVPEQPRSPYNILVVERVE*
Ga0070717_100725585	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	YGVPDKEPVEGQQLYLSNGSGPWRVRFLEQVPGMPRSPYNILVVERLADY*
Ga0070717_102694451	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKNYVYGVPDKEPVEGQELYLSNGSGPWRITFLECVPGLPRSPHNILVVEQVGD*
Ga0070717_109455611	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKNYVYGVPDKEPVEGQELYLSNGSGPWRITLLECVPGLPRSPHNIIVVEQVGD*
Ga0070716_1004821161	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	EPVEGQELYLSNGSGPWRVRLLEHVPGVPRSPYNILVVERVEAY*
Ga0070712_1014901222	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKEYVYDVPNKEPVEGQELYLSNGSGPWRVSLLEKVPEVPRSPYNILVVERV
Ga0079221_110125722	3300006804	Agricultural Soil	MREYIYDIPDKEPVEGQELYLSNGSGPWRVSYREQVPSLPRSPYNVLVVERVHM*
Ga0066709_1009446163	3300009137	Grasslands Soil	MREYVYDVPDKEPVEGQELNLSTGSGPWRVSFLENVPEQPRSPYNVLVVERVY*
Ga0066709_1013553691	3300009137	Grasslands Soil	KEPVEGQELYLSDGSGPWRVTFREQVPEVPRSPYNILVVERVY*
Ga0126380_106076513	3300010043	Tropical Forest Soil	VILREYVYDVPDKEPVEGQELYLSNGTGPWRVCLREHVPEVHRSPYNILVVERVF*
Ga0126373_118572841	3300010048	Tropical Forest Soil	MREYVYDVPEKEPVEGQELYLSNGSGPWRVSLLEQVPDVHRSPYNILVVERLY*
Ga0127469_1565821	3300010082	Grasslands Soil	EPVEGQELYLSNGSGPWRVSLLEMVPEVPRSPYNILVVERAD*
Ga0126318_105799052	3300010152	Soil	MREYIYNVPEKEPVEGQELYLSNGSGPWRVMLLDYVPEQPRSPYNILVVERVE*
Ga0134067_102853352	3300010321	Grasslands Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSFLEHVPEQPRSPYNILVVERVY*
Ga0134084_103251503	3300010322	Grasslands Soil	MREYVYDVPDREPVEGQELYLSNGSGPWRVSLLEMVPE
Ga0134062_101756341	3300010337	Grasslands Soil	EVPDKEPVEGQELYLSNGSGPWRVILREQVPEVPRSPYNILVVESVY*
Ga0126379_101079974	3300010366	Tropical Forest Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEQVPEVPRSPYNILVVERVY*
Ga0134128_121602222	3300010373	Terrestrial Soil	QELYLSNGSGPWRVRLLEHVPGVPRSPYNILVVERVEAY*
Ga0134126_103566731	3300010396	Terrestrial Soil	MREYIYDVPDKEPVVGQELYLSNGSGPWRVIYLEQVPEQPRSPYNILVVERVF*
Ga0134126_105303352	3300010396	Terrestrial Soil	MKDYVYDVPDKEPVEGQELYLSNGTGPWRVSLREHVPNVPRSPYNILVVVAVE*
Ga0134126_124268902	3300010396	Terrestrial Soil	MREYVYEVPDKEPVEGQELYLSDGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0126383_119944541	3300010398	Tropical Forest Soil	DVPDREPAEGQELYLSDGSGPWRVTVLERVPEVHKSPYNILVVERVY*
Ga0134121_110619912	3300010401	Terrestrial Soil	MREYVYEVPDKEPVEGQELYLSNGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0134121_112639293	3300010401	Terrestrial Soil	VYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF*
Ga0120153_10610152	3300011991	Permafrost	MRDYVYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVERVG*
Ga0120146_10239013	3300011992	Permafrost	MRDYVYEVPDKEPVEGQELYLSDGSGPWRVTLREQVPGVPRSPYNILVVERVG*
Ga0120167_10537312	3300012001	Permafrost	MRDYVYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVKRVD*
Ga0120174_10042687	3300012008	Permafrost	MREYVYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVKRVD*
Ga0120152_10051818	3300012011	Permafrost	YVYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVKRVD*
Ga0120152_11094262	3300012011	Permafrost	DKEPVEGQELYLSDGSGPWRVTLREQVPGVPRSPYNILVVERVG*
Ga0137380_110523392	3300012206	Vadose Zone Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSFLEHVPEQPRSPYNVLVVERVY*
Ga0137376_102808181	3300012208	Vadose Zone Soil	EPVEGQELYLSDGSGPWRVTLREQVPEVPRSPYNILVVERVY*
Ga0137379_112484363	3300012209	Vadose Zone Soil	PAEGQELYLSNGSGPWRVTLMEKVPEVHRSPYNILVVERVY*
Ga0137378_107728201	3300012210	Vadose Zone Soil	MREYVYDVPDKEPVEGQELYLSDGSGPWRVSFLENVPEQPRSPYNVLVVERVY*
Ga0137377_102483934	3300012211	Vadose Zone Soil	MKNYIYDVPDKEPVEGQELYLSNGSGPWRVRLLENVPGVPRSPHNILVVEQVE*
Ga0137377_111960702	3300012211	Vadose Zone Soil	MREYVYEVPDREPVEGQELYLSDGSGPWRVTLREQVPEVPRSPYNILVVERVY*
Ga0137371_104452512	3300012356	Vadose Zone Soil	MKNYIYDVPDKEPVEGQELYLSNGSGPWRVRLLENVPGVPRSP
Ga0137384_103642311	3300012357	Vadose Zone Soil	MKEYVYDVPDKEPVEGQELYLSNGSGPWRVTLLEKVPEVPRSPYNILVVE
Ga0137385_110064462	3300012359	Vadose Zone Soil	MKNYVYDVPDKEPVEGQELYLSNGSGPWRVRLLENVPGVPRSPYNILVVERVD*
Ga0134037_11406532	3300012372	Grasslands Soil	VMKEYVYDVPDKEPVEGQELYLSNGSGPWRVTLLEKVPEVPRSPYNILVVERVY*
Ga0137398_107748992	3300012683	Vadose Zone Soil	MKNYVYGVPDKEPVEGQELYLSNGSGPWRVRLLEHVPGVPRSPYNILVVERVED*
Ga0164298_108415522	3300012955	Soil	VMREYVYEVPDKEPVEGQELYLSDGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0164299_104289491	3300012958	Soil	YLSDGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0126369_117216151	3300012971	Tropical Forest Soil	MREYVYDVPDKEPVEGQELYLSNGTGPWRVILREDVPGTPRSPYNVLVVERVF*
Ga0126369_126497962	3300012971	Tropical Forest Soil	MREYVYDVPDKEPVEGQELYLSNGTGPWRVILRENVPGVPRSPYNILVVERVF*
Ga0134087_106732542	3300012977	Grasslands Soil	VVMREYVYDVPDKEPVEGQELYLSNGSGPWRVSLREMAPEVPRSPYNILVVERVY*
Ga0164305_105042641	3300012989	Soil	DKEPVQGQEIYLSNGSGPWRVTFREQVPNQPRSPYNTLVVESLDA*
Ga0157370_115274083	3300013104	Corn Rhizosphere	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSFLENVPEQPRSPY
Ga0157369_103389022	3300013105	Corn Rhizosphere	MKEYVYDVPDKEPVEGHELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF*
Ga0157378_104760102	3300013297	Miscanthus Rhizosphere	MREYVYEVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF*
Ga0157372_106263643	3300013307	Corn Rhizosphere	MREYIYDIPDKEPVEGQELYLSNGSGPWRVSYREHVPSLPRSPYNVLVVERVHT*
Ga0157372_108934061	3300013307	Corn Rhizosphere	PVVMREYVYEVPDKEPVEGQELYLSNGSGPWRVTLREQVPEVPLSPYNILVVESVY*
Ga0120111_10382661	3300013764	Permafrost	VYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVERVD*
Ga0120111_11085841	3300013764	Permafrost	YEVPDKEPVEGQELYLSDGSGPWRVTLREQVPGVPRSPYNILVVERVG*
Ga0120181_10953001	3300013766	Permafrost	SVGGPVVMRDYVYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVERVG
Ga0134078_104657191	3300014157	Grasslands Soil	GSLDGPVVMREYVYDVPDREPVEGQELYLSNGSGPWRVSLLEMVPEVPRSPYNILVVERAD*
Ga0182008_106662392	3300014497	Rhizosphere	YLSNGSGPWRVMVVEMVPEVPRSPYNILIVESVY*
Ga0157377_107320431	3300014745	Miscanthus Rhizosphere	MREYVYEVPDKEPVEGQELYLSNGSGPWRVTLREQVPEVPLSPYNILVVE
Ga0120170_10145253	3300014823	Permafrost	MREYVYEVPDKEPVEGQELYLSDGSGPWRVSLREQVPEVPRSPYNILVVERVDLFGNGP*
Ga0132258_108755123	3300015371	Arabidopsis Rhizosphere	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVYRSPYNILVVERVD*
Ga0132255_1057532252	3300015374	Arabidopsis Rhizosphere	GPVVMREYVYDVPDKEPVEGQELYLSNGTGPWRVILRENVPEVHRSPYNILVVERIF*
Ga0187785_103961711	3300017947	Tropical Peatland	MREYVYDVPDKEPVEGQELYLSDGSGPWRVTLREHAPEVHRSPHNILVVERVY
Ga0066655_110624691	3300018431	Grasslands Soil	VVMREYVYEVPDKEPVEGQELYLSDGSGPWRVTLREQVPEVPRSPYNILVVERVY
Ga0066667_103899571	3300018433	Grasslands Soil	KEPVEGQELYLSNGSGPWRVSLLEMVPEVPRSPYNILVVERAD
Ga0206356_113551041	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MREYIYDIPDKEPVEGQELYLSNGSGPWRVSYREQVPSLPRSPYNVLVVERVHM
Ga0206355_14317532	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MKNYIYGVPDKEPVEGQELYLSNGSGPWRVRFLEHVPGVPRSPYNILGVERVEDY
Ga0247677_10097971	3300024245	Soil	EPVEGQELYLSNGSGPWRVRFLEHVPGVPRSPYNILVVERVEDY
Ga0247680_10488381	3300024246	Soil	VYEVPDKEPVEGQELYLSNGSGPWRVRFLEHVPGVPRSPYNILVVERVEDY
Ga0207684_115856212	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF
Ga0207664_103421892	3300025929	Agricultural Soil	MREYVYEVPDKEPVEGQELYLSNGSGPWRVSLLEKVPDVHRSPYNILVVERVY
Ga0207664_106428341	3300025929	Agricultural Soil	VVMKNYVYGVPDEEPVEGQELYLSNGSGPWRVRLLEHVPGVPRSPYNILVVERVEAY
Ga0207664_116549692	3300025929	Agricultural Soil	ELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF
Ga0209686_11658681	3300026315	Soil	GQELYLSNGSGPWRVTLLEKVPEVPRSPYNILVVERVY
Ga0209805_12185171	3300026542	Soil	MKEYVYDVPDKEPVEGQELYLSNGSGPWRVTLLEKVPEVPRSPYNILVVERVY
Ga0209810_1000285123	3300027773	Surface Soil	MREYVYDVPDKEPVEGQELHLSDGSGPWRVRLREEVPGQPRSPYNVLVVERVE
Ga0209166_100168915	3300027857	Surface Soil	MRDYVYNVPEKEPVEGQELYLSNGTGPWRVCYLEHAPEQYRSPYNVLVVERLE
Ga0268264_112961841	3300028381	Switchgrass Rhizosphere	GSLDGPLVMREYVYEVPDKEPVEGQELYLSNGSGPWRVTLREQVPEVPLSPYNILVVESV
Ga0170824_1263198001	3300031231	Forest Soil	MKNYIYGVPDKEPVEGQELYLSNGSGPWRVRLLEHVPGVPRSPYNILVVERVED
Ga0318546_107120882	3300031771	Soil	MREYVYDVPDKEPVEGQELYLSDGSGPWRVTLREQVPEVHRSPYNILVVERVY
Ga0318550_106511722	3300031797	Soil	KEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPFNILVVERAY
Ga0318527_102691861	3300031859	Soil	EYIYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPFNILVVERAY
Ga0308174_101478112	3300031939	Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVIYLESAPNQPRSPYNILVVEQVY
Ga0308174_117568841	3300031939	Soil	MKNYIYGVPDKEPVEGQELYLSDGSGPWRVRFLECAPGFPRSPHNVLVVERVD
Ga0306922_109863993	3300032001	Soil	DVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPFNILVVERAY
Ga0307470_102406052	3300032174	Hardwood Forest Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPFNILVVERVY
Ga0307471_1004575023	3300032180	Hardwood Forest Soil	MREYVYDVPDKEPVEGQELYLSNGSGPWRVSLLEKVPEVHRSPYNILVVERVF
Ga0306920_1036636691	3300032261	Soil	MREYVYDVPDKEPVEGQELYLSDGSGPWRVTLREQVPEVHRSPYNILVVERVH