Metagenome / Metatranscriptome Family F068053

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F068053
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	67 residues
Representative Sequence	MDNPLDIFKKEKDGTLVWIAAVGQLHTAAALVAELSEKCPGEYRVFDKRTGEMIPSNEPLQTRRGTLH
Number of Associated Samples	64
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.00 %
% of genes near scaffold ends (potentially truncated)	20.80 %
% of genes from short scaffolds (< 2000 bps)	75.20 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.600 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (60.800 % of family members)
Environment Ontology (ENVO)	Unclassified (56.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.21% β-sheet: 8.33% Coil/Unstructured: 61.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF07238	PilZ	16.00
PF00313	CSD	4.00
PF14384	BrnA_antitoxin	3.20
PF00072	Response_reg	2.40
PF01432	Peptidase_M3	1.60
PF12088	DUF3565	1.60
PF01842	ACT	1.60
PF05235	CHAD	1.60
PF00962	A_deaminase	1.60
PF13083	KH_4	0.80
PF02899	Phage_int_SAM_1	0.80
PF12844	HTH_19	0.80
PF01266	DAO	0.80
PF01345	DUF11	0.80
PF13683	rve_3	0.80
PF13364	BetaGal_dom4_5	0.80
PF13031	DUF3892	0.80
PF00872	Transposase_mut	0.80
PF01740	STAS	0.80
PF02954	HTH_8	0.80
PF15780	ASH	0.80
PF13620	CarboxypepD_reg	0.80
PF00118	Cpn60_TCP1	0.80
PF00578	AhpC-TSA	0.80
PF01436	NHL	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	1.60
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	1.60
COG1816	Adenosine/6-amino-6-deoxyfutalosine deaminase	Nucleotide transport and metabolism [F]	1.60
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	1.60
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	1.60
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.80
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.80
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.60 %
Unclassified	root	N/A	38.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.60 %
Unclassified	root	N/A	38.40 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.60 %
Unclassified	root	N/A	38.40 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.40 %
Unclassified	root	N/A	38.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.40 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.40 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.40 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.40 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.40 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.40 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.40 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.40 %
Dermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermatophilaceae	0.80 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.40 %
Kineosphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermatophilaceae → Kineosphaera	0.80 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.40 %
Kineosphaera limosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermatophilaceae → Kineosphaera → Kineosphaera limosa	0.80 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002906\|JGI25614J43888_10044297	Not Available	1371	Open in IMG/M
3300002907\|JGI25613J43889_10014863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2170	Open in IMG/M
3300002910\|JGI25615J43890_1092462	Not Available	536	Open in IMG/M
3300002914\|JGI25617J43924_10125547	Not Available	900	Open in IMG/M
3300002914\|JGI25617J43924_10149161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300002914\|JGI25617J43924_10191501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermatophilaceae → Kineosphaera → Kineosphaera limosa	680	Open in IMG/M
3300002917\|JGI25616J43925_10177540	Not Available	836	Open in IMG/M
3300002917\|JGI25616J43925_10182299	Not Available	822	Open in IMG/M
3300002917\|JGI25616J43925_10404112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300005518\|Ga0070699_100442381	Not Available	1178	Open in IMG/M
3300006173\|Ga0070716_100496837	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300006175\|Ga0070712_101780114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300007255\|Ga0099791_10275912	Not Available	799	Open in IMG/M
3300007265\|Ga0099794_10024528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2769	Open in IMG/M
3300007265\|Ga0099794_10032654	All Organisms → cellular organisms → Bacteria	2445	Open in IMG/M
3300007265\|Ga0099794_10108553	All Organisms → cellular organisms → Bacteria → Acidobacteria	1389	Open in IMG/M
3300007788\|Ga0099795_10117348	Not Available	1061	Open in IMG/M
3300009038\|Ga0099829_10105419	All Organisms → cellular organisms → Bacteria → Acidobacteria	2199	Open in IMG/M
3300009038\|Ga0099829_10117996	All Organisms → cellular organisms → Bacteria → Acidobacteria	2085	Open in IMG/M
3300009038\|Ga0099829_10599009	Not Available	916	Open in IMG/M
3300009038\|Ga0099829_10685712	Not Available	851	Open in IMG/M
3300009038\|Ga0099829_10702536	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300009038\|Ga0099829_10841802	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300009038\|Ga0099829_11020526	Not Available	686	Open in IMG/M
3300009088\|Ga0099830_10295359	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1292	Open in IMG/M
3300009088\|Ga0099830_10546272	All Organisms → cellular organisms → Bacteria → Acidobacteria	948	Open in IMG/M
3300009088\|Ga0099830_10956702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300009089\|Ga0099828_10056640	Not Available	3274	Open in IMG/M
3300009089\|Ga0099828_10132016	All Organisms → cellular organisms → Bacteria → Acidobacteria	2193	Open in IMG/M
3300009090\|Ga0099827_11203305	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300009143\|Ga0099792_10718340	Not Available	648	Open in IMG/M
3300011120\|Ga0150983_12475274	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300011120\|Ga0150983_16559033	Not Available	527	Open in IMG/M
3300011269\|Ga0137392_10124191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2062	Open in IMG/M
3300011269\|Ga0137392_10210390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1593	Open in IMG/M
3300011269\|Ga0137392_10889741	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300011269\|Ga0137392_11073670	Not Available	661	Open in IMG/M
3300011270\|Ga0137391_11470379	Not Available	527	Open in IMG/M
3300011271\|Ga0137393_10292693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1386	Open in IMG/M
3300011271\|Ga0137393_10347364	All Organisms → cellular organisms → Bacteria → Acidobacteria	1267	Open in IMG/M
3300012096\|Ga0137389_10111170	Not Available	2193	Open in IMG/M
3300012096\|Ga0137389_10190948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1701	Open in IMG/M
3300012096\|Ga0137389_10593188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	952	Open in IMG/M
3300012096\|Ga0137389_10598636	Not Available	947	Open in IMG/M
3300012096\|Ga0137389_10624452	Not Available	926	Open in IMG/M
3300012189\|Ga0137388_10075421	All Organisms → cellular organisms → Bacteria	2825	Open in IMG/M
3300012189\|Ga0137388_10228428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1687	Open in IMG/M
3300012189\|Ga0137388_10620345	All Organisms → cellular organisms → Bacteria → Acidobacteria	1005	Open in IMG/M
3300012189\|Ga0137388_11130965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300012202\|Ga0137363_10147300	All Organisms → cellular organisms → Bacteria → Acidobacteria	1846	Open in IMG/M
3300012202\|Ga0137363_10281840	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300012202\|Ga0137363_10392718	Not Available	1154	Open in IMG/M
3300012203\|Ga0137399_10031300	All Organisms → cellular organisms → Bacteria	3666	Open in IMG/M
3300012203\|Ga0137399_10302577	Not Available	1321	Open in IMG/M
3300012205\|Ga0137362_10036542	All Organisms → cellular organisms → Bacteria	3929	Open in IMG/M
3300012205\|Ga0137362_10080422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2716	Open in IMG/M
3300012205\|Ga0137362_10198458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1726	Open in IMG/M
3300012205\|Ga0137362_10443265	All Organisms → cellular organisms → Bacteria → Acidobacteria	1124	Open in IMG/M
3300012205\|Ga0137362_10514086	Not Available	1035	Open in IMG/M
3300012361\|Ga0137360_11147492	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300012362\|Ga0137361_10173871	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	1938	Open in IMG/M
3300012362\|Ga0137361_11351216	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300012363\|Ga0137390_10404737	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1343	Open in IMG/M
3300012363\|Ga0137390_11510178	Not Available	612	Open in IMG/M
3300012918\|Ga0137396_10645614	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300012923\|Ga0137359_10469576	Not Available	1112	Open in IMG/M
3300012923\|Ga0137359_10639518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M
3300012923\|Ga0137359_10718024	Not Available	870	Open in IMG/M
3300012923\|Ga0137359_10760916	Not Available	841	Open in IMG/M
3300012923\|Ga0137359_11115020	Not Available	675	Open in IMG/M
3300012923\|Ga0137359_11369274	Not Available	596	Open in IMG/M
3300012925\|Ga0137419_11159253	Not Available	646	Open in IMG/M
3300012927\|Ga0137416_11107664	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300012927\|Ga0137416_11876600	Not Available	548	Open in IMG/M
3300015241\|Ga0137418_10361408	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300020579\|Ga0210407_10067088	All Organisms → cellular organisms → Bacteria	2690	Open in IMG/M
3300020579\|Ga0210407_10266931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1334	Open in IMG/M
3300020580\|Ga0210403_11369569	Not Available	537	Open in IMG/M
3300020583\|Ga0210401_10011301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8722	Open in IMG/M
3300021088\|Ga0210404_10003506	All Organisms → cellular organisms → Bacteria	6358	Open in IMG/M
3300021088\|Ga0210404_10591792	Not Available	630	Open in IMG/M
3300021178\|Ga0210408_10609762	Not Available	864	Open in IMG/M
3300021403\|Ga0210397_10891734	Not Available	688	Open in IMG/M
3300022726\|Ga0242654_10158629	Not Available	761	Open in IMG/M
3300024330\|Ga0137417_1194806	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300024330\|Ga0137417_1321958	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300024330\|Ga0137417_1369343	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1179	Open in IMG/M
3300024330\|Ga0137417_1493548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1908	Open in IMG/M
3300025939\|Ga0207665_10584321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	871	Open in IMG/M
3300026304\|Ga0209240_1006695	All Organisms → cellular organisms → Bacteria	4340	Open in IMG/M
3300026304\|Ga0209240_1028793	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2121	Open in IMG/M
3300026304\|Ga0209240_1030535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2058	Open in IMG/M
3300026319\|Ga0209647_1129492	All Organisms → cellular organisms → Bacteria → Acidobacteria	1130	Open in IMG/M
3300026320\|Ga0209131_1135471	Not Available	1264	Open in IMG/M
3300026498\|Ga0257156_1124079	Not Available	538	Open in IMG/M
3300026499\|Ga0257181_1036199	Not Available	789	Open in IMG/M
3300026514\|Ga0257168_1001441	Not Available	3151	Open in IMG/M
3300026551\|Ga0209648_10008853	All Organisms → cellular organisms → Bacteria	8699	Open in IMG/M
3300026551\|Ga0209648_10024206	All Organisms → cellular organisms → Bacteria	5309	Open in IMG/M
3300026551\|Ga0209648_10086832	All Organisms → cellular organisms → Bacteria → Acidobacteria	2595	Open in IMG/M
3300026551\|Ga0209648_10100050	All Organisms → cellular organisms → Bacteria → Acidobacteria	2377	Open in IMG/M
3300026551\|Ga0209648_10254893	Not Available	1296	Open in IMG/M
3300026551\|Ga0209648_10562705	Not Available	634	Open in IMG/M
3300027603\|Ga0209331_1080281	Not Available	809	Open in IMG/M
3300027671\|Ga0209588_1014078	All Organisms → cellular organisms → Bacteria	2446	Open in IMG/M
3300027846\|Ga0209180_10094438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1699	Open in IMG/M
3300027846\|Ga0209180_10179679	All Organisms → cellular organisms → Bacteria → Acidobacteria	1221	Open in IMG/M
3300027862\|Ga0209701_10084968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1991	Open in IMG/M
3300027862\|Ga0209701_10212954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1147	Open in IMG/M
3300027875\|Ga0209283_10130036	All Organisms → cellular organisms → Bacteria → Acidobacteria	1663	Open in IMG/M
3300027875\|Ga0209283_10862815	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300027882\|Ga0209590_11037094	Not Available	510	Open in IMG/M
3300027903\|Ga0209488_10395815	All Organisms → cellular organisms → Bacteria → Acidobacteria	1023	Open in IMG/M
3300028536\|Ga0137415_10263573	All Organisms → cellular organisms → Bacteria → Acidobacteria	1530	Open in IMG/M
3300028536\|Ga0137415_11167240	Not Available	584	Open in IMG/M
3300030991\|Ga0073994_11967756	Not Available	817	Open in IMG/M
3300031753\|Ga0307477_10008565	All Organisms → cellular organisms → Bacteria	7072	Open in IMG/M
3300031753\|Ga0307477_10016245	All Organisms → cellular organisms → Bacteria	5077	Open in IMG/M
3300031754\|Ga0307475_10001097	All Organisms → cellular organisms → Bacteria → Acidobacteria	16185	Open in IMG/M
3300031820\|Ga0307473_10885521	Not Available	643	Open in IMG/M
3300031962\|Ga0307479_10037077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4669	Open in IMG/M
3300031962\|Ga0307479_11705560	Not Available	583	Open in IMG/M
3300031962\|Ga0307479_11906531	Not Available	544	Open in IMG/M
3300032180\|Ga0307471_100062879	All Organisms → cellular organisms → Bacteria → Acidobacteria	3148	Open in IMG/M
3300032205\|Ga0307472_100140837	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.40%
Loam	Environmental → Terrestrial → Soil → Loam	5.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.40%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	60.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	16.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.20%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.40%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25614J43888_100442972	3300002906	Grasslands Soil	MGPFDIXTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTLH*
JGI25613J43889_100148631	3300002907	Grasslands Soil	MDSPFDIFKKEKDGTMIWIAAVGQLHTAAALVAELSEKYPGEYRVFDRRTGEILPSNEPLQTGCGTLH*
JGI25615J43890_10924622	3300002910	Grasslands Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTLH*
JGI25617J43924_101255471	3300002914	Grasslands Soil	KEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTLH*
JGI25617J43924_101491612	3300002914	Grasslands Soil	MDNPLDIFKKEKDGTLTWIAAVGQLHTAAALVAELFQDSPGEYRVFDNRTGEMIPSQEPTQTWRGTLH*
JGI25617J43924_101915011	3300002914	Grasslands Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAXRVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECETLH*
JGI25616J43925_101775402	3300002917	Grasslands Soil	MDNPFDIFKKEKDGTLVWIAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMIPSNEPLQIGRGTLH*
JGI25616J43925_101822992	3300002917	Grasslands Soil	MGPFDIFKKEKDGTLVWVAAVGQLHTAAAFVAELSEKYPGEYRVFDKRTGEMITSDEPLQTGCGTLH*
JGI25616J43925_104041122	3300002917	Grasslands Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYSGEYRVFDKRTGEMLPSNEPLQTGCGTLH*
Ga0070699_1004423812	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDNPLDIFKKERDGTLVWIASVGQLHTAAALVAELSERHPGEYRVFDKRTGETIPSNEPLQTGGGTLH*
Ga0070716_1004968372	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MDNPFDIFRKEQDGTLVWIAAVGQLHIAAALVAELYEKYPGKYRVLDRRTGEMLPSNEPLQTTLH*
Ga0070712_1017801141	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AMDNPFDIFRKEQDGTLVWIAAVGQLHIAAALVAELYEKYPGKYRVLDRRTGEMLPSNEPLQTTLH*
Ga0099791_102759121	3300007255	Vadose Zone Soil	MDNPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEECLGEYRVFDKRTGDIIPSHEPLQIGRGTLH*
Ga0099794_100245287	3300007265	Vadose Zone Soil	LDNPFDIFQKEKDGTMVWIAAVGHLHTAAALVAELSEKCPGEYRVFDKRTGEIISSEEPLQIVRGTLH*
Ga0099794_100326544	3300007265	Vadose Zone Soil	MDNPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEECPGEYRVFDKRTGDIIPSHEPLQIGRGTLH*
Ga0099794_101085531	3300007265	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAARVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECETLH*
Ga0099795_101173481	3300007788	Vadose Zone Soil	MDIPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKHPGEYRVFDKRTGETLPSNKPLQTGCGTLH*
Ga0099829_101054193	3300009038	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAARVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECGTLH*
Ga0099829_101179964	3300009038	Vadose Zone Soil	MDNPFNIFQKEKHGTLVWIAAVGQLHTAAALVAELSEKYPGEYHVFDKRAGEIISSEEPLQTGRGTLR*
Ga0099829_105990093	3300009038	Vadose Zone Soil	MDNPLDIFKKEKDGTLTWIAAVGQLHTAAALVAELFQDSPGEYRVFDNRTGEMIPSQE
Ga0099829_106857122	3300009038	Vadose Zone Soil	VRPQSFCGLGIIALDNPFDIFQKEKDGTMVWIAAVGHLHTAAALVAELSENYPGEYRVFDKRTGEMIPSHEPLYCE*
Ga0099829_107025361	3300009038	Vadose Zone Soil	MDNPLDIFKKEKDGTLVWIAAVGQLHTAAALVAELSEKCPGEYRVFDKRTGEMIPSNEPLQTRRGTLH*
Ga0099829_108418022	3300009038	Vadose Zone Soil	MDNPFDIFKKEKDGTIVWITAVSQLHTAAALVAELSEKCPGEYRVFDKRTGETIPSEEPLQAGRGTSH*
Ga0099829_110205261	3300009038	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHMAAARVAELFQESPGEYCVFDQRTGKMIPSQEPLQTGCGTLH*
Ga0099830_102953592	3300009088	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHMAAARVTELFQESPGEYCVFDQRTGKMIPSQEPLQTGCGTLH*
Ga0099830_105462721	3300009088	Vadose Zone Soil	MDNPLDIFKKEKDGTLTWIAAVGQLHTAAALVAELFQDSPGEYRVFDKRTGEMIPSQEPLQTGRGTSH*
Ga0099830_109567022	3300009088	Vadose Zone Soil	MDNPFDIFKKEKDGTMVWIAVVGQLHTAAALVAELSEKYPGEYRVFDKRTGETIPAQQPLQTGSGTLH*
Ga0099828_100566404	3300009089	Vadose Zone Soil	MDNPFDIFKKEKDGTMVWIAAVGQLHIAAALVAELSEKYPGEYRVFDKRTGETIPAQQPLQTGSGTLH*
Ga0099828_101320162	3300009089	Vadose Zone Soil	MDNPLDIFKKEKDGTLVWIAAVGQLHTAAALVAELSEKCPGEYRVFDKRTREMIPSNEPLQTRRGTLH*
Ga0099827_112033051	3300009090	Vadose Zone Soil	VRPQSFCGLGIIALDNPFDIFQKEKDGTMVWIAAVAHLHTAAALVAELSEKYPGEYHVFDKRTGEIIPSHEPLQTGRGSYIR*
Ga0099792_107183401	3300009143	Vadose Zone Soil	PAAMDNLVDIFRKEKDGTLIWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMIPSKEPLQTRI*
Ga0150983_124752743	3300011120	Forest Soil	MDNPLEIFKKEKDGTLVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGAMIPSNEPLQTGRGTLH*
Ga0150983_165590331	3300011120	Forest Soil	MESPFDIFKKQRDGTLVWIAAVGQLHMAAALVADLHQTFPGEYRVLDKRTGEMIPSQEPCGTFN*
Ga0137392_101241912	3300011269	Vadose Zone Soil	VRPQSFCGLGIIALDNPFDIFQKEKDGTMVWIAAVGHLHTAAALVAELSEKCPGEYRVFDKRTGEIISSEEPLQIVRGTLH*
Ga0137392_102103902	3300011269	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHMAAARVAELLQESPGEYCVFDQRTGKMIPSQEPLQTGCGTLH*
Ga0137392_108897412	3300011269	Vadose Zone Soil	MNNPFDIFKKEKDGTIVWITAVSQLHTAAALVAELSEKCPGEYRVFDKRTGETIPSEEPLQAGRGTSH*
Ga0137392_110736702	3300011269	Vadose Zone Soil	MDNLVDIFRKEKDGSLVWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMILSQEPLQTGCGALH*
Ga0137391_114703791	3300011270	Vadose Zone Soil	MDNPFDIFKKEKDGTMIWIAAVGQLHTAAVRVAELPQESPGEYCVFDQRTGKMIPSQEPSQTECGTLH*
Ga0137393_102926933	3300011271	Vadose Zone Soil	MDNPFDIFKKEKDGNMVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGETIPAQQPLQTGSGTLH*
Ga0137393_103473643	3300011271	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAALVAEVSEKYPGEYRVFDRRTGEILPS
Ga0137389_101111703	3300012096	Vadose Zone Soil	MDNLVDIFRKEKDGTLIWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMIPSQEPLQTRI*
Ga0137389_101909481	3300012096	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMILSQEPLQTGCGTLH*
Ga0137389_105931882	3300012096	Vadose Zone Soil	MDNPFDIFMKEKWTLVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGETIPAQQPLQTGSGTLH*
Ga0137389_105986363	3300012096	Vadose Zone Soil	MNNPFDIFKKEKDGTIVWITAVSQLHTAAALVAELSEKCPGEYRVFDKRTGETIPSNEPLQTVHGTLH*
Ga0137389_106244521	3300012096	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAVRVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECETLH*
Ga0137388_100754212	3300012189	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMILSQEPLQTGCGALH*
Ga0137388_102284283	3300012189	Vadose Zone Soil	MDNLVDIFRKEKDGTLIWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMIPSKEPLQTRI*
Ga0137388_106203452	3300012189	Vadose Zone Soil	VRPQSFCGLGIIALDNPFDIFQKEKDGTMVWIAAVDHLHTAAALVAELSEKCPGEYRVFDKRTGEVISSEEPLQIVRGTLH*
Ga0137388_111309651	3300012189	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHMAAARVAELFQESPGEYCVFDQRTGKMI
Ga0137363_101473004	3300012202	Vadose Zone Soil	MDNPFDIFKKEKDGTMIWIAAVSQLHTAAALVAELSEKYPGEYHVFDKRAGEIISSEEPLQT
Ga0137363_102818402	3300012202	Vadose Zone Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELYEKCPGEYRVFDKRTREMIPSNASFQTGRGTLRQIRFSCE*
Ga0137363_103927183	3300012202	Vadose Zone Soil	NLFAAWEFIALDNPFDIFQKEKDGTMVWIAAVAHLHTAAALVAELSEKYPGEYHVFDKRTGEIIPSHEPLQTGRGTLR*
Ga0137399_100313003	3300012203	Vadose Zone Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELYEKCPGEYRVFDKRTREMIPSNASFQTGRGTLHQIRFSCE*
Ga0137399_103025771	3300012203	Vadose Zone Soil	MDNLVDIFRKEKGGTLVWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMILSQEPLQTGCGTLH*
Ga0137362_100365425	3300012205	Vadose Zone Soil	MDNPFDLFKKEKEGTMVWIAAVGQLHTAAALVAELSQKHPGEYRVFDKRTGETLPSNKPLQTGCGTLH*
Ga0137362_100804222	3300012205	Vadose Zone Soil	LDNPFDIFQKEKDGTMVWIAAVAHLHTAAALVAELSEKYPGEYHVFDKRTGEIIPSHEPLQTGRGTLR*
Ga0137362_101984582	3300012205	Vadose Zone Soil	MDSLVDIFRKEKDGTLIWIAAVVQLHTAAALVAELFQESPGEYCVFDQRTGKMIPSQEPLQTPS*
Ga0137362_104432652	3300012205	Vadose Zone Soil	MKEKGTLVWIAAVGQLHTATALVAELSEKYPGEYRVFDKRTGEIISSEESLQTGRGTLR*
Ga0137362_105140862	3300012205	Vadose Zone Soil	MKEKGTLVWIAAVGQLHTAAALVAELSEKYPGDYVVCDKRTGDMIPHEPMQTGGGTSH*
Ga0137360_111474922	3300012361	Vadose Zone Soil	MDIPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKHPGEYRVFDKRTGETLPSNK
Ga0137361_101738712	3300012362	Vadose Zone Soil	MGPFDIFTKEKDGTLVWIAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTVH*
Ga0137361_113512161	3300012362	Vadose Zone Soil	MDSPFDIFKKEKDGTMIWIAAVGQLHTAAALVAELSERYPGEYRVFDRRTGEILPSNEPLQTGCGTLH*
Ga0137390_104047373	3300012363	Vadose Zone Soil	LGIIALDNPFDIFQKEKDGTMVWIAAVGHLHTAAALVAELSENYPGDYRVFDKRTGEMISSEEPLQSGRGTLR*
Ga0137390_115101781	3300012363	Vadose Zone Soil	MDNPFNIFQKEKHGTLVWIAAVGQLHTAAALVAELSEKYPGEYNVFAKRAGEIISSEDPLQTGRGTLR*
Ga0137396_106456141	3300012918	Vadose Zone Soil	MDNPLEIFKKEKDGTLVWIAAVGQLHAAAALVAELSEKYPGEYRVFDKRTGEMISSEEPLQTGRGTLH*
Ga0137359_104695761	3300012923	Vadose Zone Soil	PFDIFQKEKDGTMVWIAAVAHLHTAAALVAELSEKYPGEYHVFDKRTGEIIPSHEPLQTGRGTLR*
Ga0137359_106395183	3300012923	Vadose Zone Soil	GAAMDSPFDIFKKEKDGTMIWIAAVGQLHTAAALVAELSEKYPGEYRVFDRRTGEILPSNEPLQTGCGTLH*
Ga0137359_107180243	3300012923	Vadose Zone Soil	EKDGTLVWIAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMISNEPLQTGCGTVH*
Ga0137359_107609162	3300012923	Vadose Zone Soil	FDICKKEKDGTLVWIAAVGQLHTAAAMVAELSEKFLAEYRVFDKRTGEMISNEPLQTGCGTLH*
Ga0137359_111150202	3300012923	Vadose Zone Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPL
Ga0137359_113692741	3300012923	Vadose Zone Soil	GAAMDSPFDIFKKEKDGTMIWIAAVGQLHTAAALVAELSERYPGEYRVFDRRTGEILPSNEPLQTGCGTLH*
Ga0137419_111592532	3300012925	Vadose Zone Soil	MDSPFDIFKKEEDGTMVWIAAVGQVHTAAALVAELSEKYPGEYRVFDKRTGEMISNEPLQTGCGTVH*
Ga0137416_111076642	3300012927	Vadose Zone Soil	MDNPFDIFQKEKDGTLVWIAAVGQLHTAAALVAELSENYAGEYRVFDKRTGEMISSEEPLQTGRGTLH*
Ga0137416_118766001	3300012927	Vadose Zone Soil	MDSLDIFKKEKDGTMVWIAAVGQLHTAAALVADLSEKYPGEYRVFDKRTGEMLPSSEPLQTGCGTLK*
Ga0137418_103614083	3300015241	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQVHTAAALVAELSEKYPGEYRVFDKRTGEMLPSNEPLRTGRGTLH*
Ga0210407_100670881	3300020579	Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELYEKCPGEYRVFDKRTREMIPSNEPLPAGRGTLH
Ga0210407_102669313	3300020579	Soil	MDNPLEIFKKENDGTLVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGAMIPSNEPLQTGRGALR
Ga0210403_113695691	3300020580	Soil	MESPFDIFKKQRDGTLGWIAAVGQLHMAAALVADLHQTFPGEYRVLDKRTGEMIPSQE
Ga0210401_1001130112	3300020583	Soil	MESPFDIFKKQRDGTLVWIAAVGQLHMAAALVADLHQTFPGEYRVLDKRTGEMIPSQEPCGTFN
Ga0210404_100035063	3300021088	Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELSQECPGEYRVFDKRTREMIPSNEPLPAGRGTLH
Ga0210404_105917922	3300021088	Soil	MENPLDIFKKETDGTIVWIAAVGQLDRAAALVAELSEKHPGEYRVFDKRTGAMIPSQESLQIGGGTLH
Ga0210408_106097622	3300021178	Soil	GAVMDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKCPGEYSVFDKRTREMIPSNASFQTGRGTLR
Ga0210397_108917343	3300021403	Soil	FKKQRDGTLVWIAAVGQLHMAAALVADLHQTFPGEYRVLDKRTGEMIPSQEPCGTFN
Ga0242654_101586291	3300022726	Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELSGKCPGEYSVFDKRTREMIPSNASFETGRGTLR
Ga0137417_11948062	3300024330	Vadose Zone Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELYEKCPGEYRVFDKRTREMIPSNASFQTGRGTLHQIRFSCE
Ga0137417_13219583	3300024330	Vadose Zone Soil	DIVDIFRKEKDGTLVWIAAVGQLHTAAARVAELSQESPGEYCVFDTAHGEDDSITGTSQTECETLH
Ga0137417_13693432	3300024330	Vadose Zone Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTLHY
Ga0137417_14935481	3300024330	Vadose Zone Soil	MDNPFDICKKEKDGTLVWIAAVGQLHTAAAMVAELSEKYPAEYRVFDERTGEMISNEPLQTGCGTLH
Ga0207665_105843212	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MDNPFDIFRKEQDGTLVWIAAVGQLHIAAALVAELYEKYPGKYRVLDRRTGEMLPSNEPLQTTLH
Ga0209240_10066959	3300026304	Grasslands Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTLH
Ga0209240_10287931	3300026304	Grasslands Soil	MDSPFDIFKKEKDGTMIWIAAVGQLHTAAALVAELSEKYPGEYRVFDRRTGEILPSNEPLQTGCGTLH
Ga0209240_10305351	3300026304	Grasslands Soil	MGPFDIFKKEKDGTLVWVAAVGQLHTAAAFVAELSEKYPGEYRVFDKRTGEMITSDEPLQTGCGTLH
Ga0209647_11294922	3300026319	Grasslands Soil	MDNRLDIFKKEKDGTLVWIAAVDQLHTAAALVAELSEKYPVEYRVFDKRTGETFPSNEPLETR
Ga0209131_11354712	3300026320	Grasslands Soil	VGPFDIFKKEKDGTLVWIAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMISNEPLQTGCGTVH
Ga0257156_11240791	3300026498	Soil	MDSPFDIFKKEKDGTMIWIAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPL
Ga0257181_10361991	3300026499	Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMIPSNEPLQIGRGTLH
Ga0257168_10014416	3300026514	Soil	MDIVDIFRKEKDGTLVWIAAVDQLHTAAVRVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECGTLH
Ga0209648_1000885311	3300026551	Grasslands Soil	MDNPLDIFKKEKDGTLTWIAAVGQLHTAAALVAELFQDSPGEYRVFDNRTGEMIPSQEPTQTWRGTLH
Ga0209648_100242067	3300026551	Grasslands Soil	MDNPFDIFKKEKDGTLVWIAAVGQLHAAAALVAELSEKYPGEYRVFDKRTGEMIPSNEALQTGCGTLH
Ga0209648_100868323	3300026551	Grasslands Soil	LDNPFDIFQKEKDGTMVWIAAVGHLHTAAALVAELSEKCPGEYRVFDKRTGEIISSEEPLQIVRGTLH
Ga0209648_101000504	3300026551	Grasslands Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAARVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECETLH
Ga0209648_102548933	3300026551	Grasslands Soil	MGPFDIFTKEKDGTLVWVAAVGQLHTAAAMVAELSEKYPGEYRVFDKRTGEMLPSNEPLQTGCGTVH
Ga0209648_105627052	3300026551	Grasslands Soil	FKKEKDGTIVWITAVSQLHTAAALVAELSEKCPGEYRVFDKRTGEMIPSNEPLQTRRGTL
Ga0209331_10802811	3300027603	Forest Soil	MDSPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGETLPSNEPLQTGCG
Ga0209588_10140783	3300027671	Vadose Zone Soil	MDNPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEECPGEYRVFDKRTGDIIPSHEPLQIGRGTLH
Ga0209180_100944383	3300027846	Vadose Zone Soil	MDNPFNIFQKEKHGTLVWIAAVGQLHTAAALVAELSEKYPGEYHVFDKRAGEIISSEEPLQTGRGTLR
Ga0209180_101796793	3300027846	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAARVAELSQESPGEYCVFDQRTGKMIPSQE
Ga0209701_100849682	3300027862	Vadose Zone Soil	MDNPFDIFKKEKDGTMVWIAVVGQLHTAAALVAELSEKYPGEYRVFDKRTGETIPAQQPLQTGSGTLH
Ga0209701_102129541	3300027862	Vadose Zone Soil	MDNLVDIFRKEKDGTLVWIAAVVQLHMAAARVAELFQESPGEYCVFDQRTGKMIPSQEPLQTGCGTLH
Ga0209283_101300361	3300027875	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAALVAELSEKYPGEYHVFDKRAGEIISSEEPLQTGRGTLR
Ga0209283_108628151	3300027875	Vadose Zone Soil	KEKDGNMVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGETIPAQQPLQTGSGTLH
Ga0209590_110370941	3300027882	Vadose Zone Soil	LDNPFDIFQKEKDGTMVWIAAVAHLHTAAALVAELSEKYPGEYHVFDKRTGEIIPSHEPLQTGRGSYIR
Ga0209488_103958152	3300027903	Vadose Zone Soil	MDIPFDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKHPGEYRVFDKRTGETLPSNKPLQTGCGTLH
Ga0137415_102635732	3300028536	Vadose Zone Soil	MNNPFDIFKKEKDGTIVWITAVSQLHTAAALVAELSEKCPGEYRVFDKRTGEMISSEEPLQTGRGTLH
Ga0137415_111672402	3300028536	Vadose Zone Soil	MDIVDIFRKEKDGTLVWIAAVGQLHTAAARVAELSQESPGEYCVFDQRTGKMIPSQEPSQTECET
Ga0073994_119677561	3300030991	Soil	MDSPFDIFKKEKDGILVWIAAVAQLHTAAAMVAELSEKYPGEYLVFDKRTGETLPSNEPLQTGCGTLH
Ga0307477_100085654	3300031753	Hardwood Forest Soil	MDNPLEIFKQEKDGTLVWIAAVGQLHMAAALVAELSEKYPGEYSVFDKRTGAMIPSNEPLQTGRGTLH
Ga0307477_100162453	3300031753	Hardwood Forest Soil	MDNPLEIFKKEKDGTLVWIAAVGQLHAAAALVAELSEKCPGEYRVFDKRTGAMIPSNEPLQTGRGTLH
Ga0307475_100010974	3300031754	Hardwood Forest Soil	MDNPFEIFKKEKDGTLAWIAVVGQLHTAAALVAELFEKCPGEYRVFDKRTGEMISSDEPLQTGRGTLH
Ga0307473_108855211	3300031820	Hardwood Forest Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKCPGEYRVFDKRTREMIPSNERLPTGRGTL
Ga0307479_100370774	3300031962	Hardwood Forest Soil	MDNPLDIFKKEKDGTMVWIAAVGQLHTAAALVAELSEKCPGEYRVFDKRTREMIPSNERLPTGRGTLH
Ga0307479_117055602	3300031962	Hardwood Forest Soil	MHNPLEIFKKEKDGTLVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGAMIPSNEPLQTGRGTLH
Ga0307479_119065312	3300031962	Hardwood Forest Soil	MDNPLEIFKKEKDGTLVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGAMIPSNEPLQTGRGTLH
Ga0307471_1000628791	3300032180	Hardwood Forest Soil	MDNPLEIFKKENDGTLVWIAAVGQLHTAAALVAELSEKYPGEYRVFDKRTGAMIPSNEPLQTGRGTLR
Ga0307472_1001408372	3300032205	Hardwood Forest Soil	MDNPFDIFLKEKDGTLVWIAAVGQLHTAAAFVAELTEKYAGDYHVFDKRTGEMIPSHEPLQTARGSYIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F068053

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences