NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F068038

Metagenome Family F068038

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068038
Family Type Metagenome
Number of Sequences 125
Average Sequence Length 54 residues
Representative Sequence VDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK
Number of Associated Samples 104
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 7.20 %
% of genes from short scaffolds (< 2000 bps) 5.60 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.800 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(28.800 % of family members)
Environment Ontology (ENVO) Unclassified
(43.200 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.600 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.54%    β-sheet: 0.00%    Coil/Unstructured: 41.46%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF04055Radical_SAM 2.40
PF07238PilZ 1.60
PF11154DUF2934 1.60
PF13366PDDEXK_3 1.60
PF00561Abhydrolase_1 0.80
PF13537GATase_7 0.80
PF01068DNA_ligase_A_M 0.80
PF03400DDE_Tnp_IS1 0.80
PF07274DUF1440 0.80
PF01548DEDD_Tnp_IS110 0.80
PF04239DUF421 0.80
PF02082Rrf2 0.80
PF09994DUF2235 0.80
PF07638Sigma70_ECF 0.80
PF04216FdhE 0.80
PF04945YHS 0.80
PF13517FG-GAP_3 0.80
PF06537DHOR 0.80
PF01435Peptidase_M48 0.80
PF02771Acyl-CoA_dh_N 0.80
PF00578AhpC-TSA 0.80
PF05598DUF772 0.80
PF04075F420H2_quin_red 0.80
PF00682HMGL-like 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG2186DNA-binding transcriptional regulator, FadR familyTranscription [K] 0.80
COG3547TransposaseMobilome: prophages, transposons [X] 0.80
COG3488Uncharacterized conserved protein with two CxxC motifs, DUF1111 familyGeneral function prediction only [R] 0.80
COG3477Uncharacterized membrane protein YagU, involved in acid resistance, DUF1440 familyFunction unknown [S] 0.80
COG3058Formate dehydrogenase maturation protein FdhEPosttranslational modification, protein turnover, chaperones [O] 0.80
COG2524Predicted transcriptional regulator, contains C-terminal CBS domainsTranscription [K] 0.80
COG2378Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domainsTranscription [K] 0.80
COG2323Uncharacterized membrane protein YcaP, DUF421 familyFunction unknown [S] 0.80
COG2188DNA-binding transcriptional regulator, GntR familyTranscription [K] 0.80
COG0640DNA-binding transcriptional regulator, ArsR familyTranscription [K] 0.80
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.80
COG1959DNA-binding transcriptional regulator, IscR familyTranscription [K] 0.80
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.80
COG1725DNA-binding transcriptional regulator YhcF, GntR familyTranscription [K] 0.80
COG1662Transposase and inactivated derivatives, IS1 familyMobilome: prophages, transposons [X] 0.80
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.80
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.80
COG1414DNA-binding transcriptional regulator, IclR familyTranscription [K] 0.80


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.80 %
All OrganismsrootAll Organisms7.20 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005174|Ga0066680_10014159All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4197Open in IMG/M
3300005557|Ga0066704_10212920All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1308Open in IMG/M
3300006028|Ga0070717_11815464All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300012349|Ga0137387_10186308All Organisms → cellular organisms → Bacteria1488Open in IMG/M
3300012354|Ga0137366_10209466All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1454Open in IMG/M
3300012359|Ga0137385_10409184All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1156Open in IMG/M
3300014150|Ga0134081_10108971All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium878Open in IMG/M
3300025939|Ga0207665_10058610All Organisms → cellular organisms → Bacteria2604Open in IMG/M
3300026343|Ga0209159_1200455All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil28.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil19.20%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil7.20%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil7.20%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.20%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.60%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.60%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.60%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.60%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.80%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.80%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027548Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25386J43895_1019862623300002912Grasslands SoilEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK*
Ga0066672_1086844513300005167SoilESAKRALQGARNDLEHAGGNWGGHRAAAMNHIDQALKELGEAEKYAREHHDTK*
Ga0066683_1038936413300005172SoilPQKDKPAEVDRAEQSLHTAKGELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0066680_1001415913300005174SoilPRAPQRDVPAEVESAKRALQGARNDLEHAGGNWGGHRAAAMNHIDQALKELAEAEKYAREHHDMK*
Ga0066680_1066593413300005174SoilMSPSATLFSSPQKDKPAEVDRAQQSLQTAKNELEHAGTEWGGHRVQAIKHIDAALKELEQAE
Ga0066679_1059250823300005176SoilAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK*
Ga0066690_1001107573300005177SoilPRAPQRDVPAEVESAKRALQGARNDLEHAGGNWGGHRAAAMNHIDQALKELGEAEKYAREHHDTK*
Ga0066671_1065912913300005184SoilTLFSSPQKDKPAEVDRAQQSLQTAKNALEHAGTEWGGHSIQAIKHIDAALKELEQAE*
Ga0066676_1052085713300005186SoilAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK*
Ga0066675_1039282323300005187SoilLNTAKGELEKAGAEWGGHRMQAIKHIDAALHELELGEQWARQHHDIK*
Ga0070680_10091875013300005336Corn RhizosphereAEVENARRALQNANNELQHAGGQWGGHRVAAMHHIEQALGELNQAEKWAREHHDMK*
Ga0066687_1009019313300005454SoilQKDKPAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK*
Ga0070698_10062157533300005471Corn, Switchgrass And Miscanthus RhizosphereNALKQAHNELQHAGGEWGGHRVKAMQHIQEAIAELNEAEKWAREHHEIK*
Ga0070735_1004625813300005534Surface SoilRRALQGAHNDLEHAGGQWGGHRVAAMKHIEEALKELGEAEKYAREHHDIK*
Ga0070697_10089488413300005536Corn, Switchgrass And Miscanthus RhizospherePQRDKPGEVDRAERSLQTAKNELARAGTEWGGHRVQAIKHIDAALRELEEAERWAREHHDIK*
Ga0070697_10194336713300005536Corn, Switchgrass And Miscanthus RhizosphereMDDARGAVDRAEQSLQTAKKQLEGAGAERGGHRVQAIKHIDAALHELELGEQWARQ
Ga0070732_1021776113300005542Surface SoilIDSARRALQGAHNDLEHAGGQWGGHRVAAMKHIEEALKELGEAEKYAREHHDIK*
Ga0066701_1095717123300005552SoilELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK*
Ga0066704_1021292013300005557SoilEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0066670_1063015613300005560SoilELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0066693_1010676823300005566SoilPEPAQKDVPAEVENARRALRNANTELEHAGGQWGGHRVAAMHHIEQALGELNQAEKWAREHHDMK*
Ga0066703_1032150713300005568SoilPAQKDVPAEVENARRALRNANTELEHAGGQWGGHRVAAMHHIEQALGELNQAEKWAREHHDMK*
Ga0066703_1063260423300005568SoilAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0066708_1070946423300005576SoilVDRAQQSLQTAKNALEHAGTEWGGHSIQAIKHIDAALKELEQAE
Ga0066706_1136729113300005598SoilVILEHAGGELGGHRVQAMKHIDAALHELEQAEQWARQHHDIK*
Ga0066903_10094474133300005764Tropical Forest SoilQHDVPGEVDSARNALKQAHNDLQHAGGEWGGHRAKALQHIQEAISELNEAEKWAREHHDIK*
Ga0070717_1181546413300006028Corn, Switchgrass And Miscanthus RhizosphereARNDLEHAGGQWGGHRVAAMKHIDEALKELGEAEAWARAHHNMR*
Ga0066656_1034089513300006034SoilDRAEQSLHTAKGELEKAGTEWGGHRVAAIKHIDAALKELEQAEAWARQHHEIK*
Ga0066656_1100026213300006034SoilDRAEQSLHTAKGELEKAGTEWGGHRVAAIKHIDAALKELEQAEAWARQHHEMK*
Ga0070716_10122145713300006173Corn, Switchgrass And Miscanthus RhizosphereSARSALRNAKSELEHAGAQWGGHRVAAMHHIDQALGELNEAEKWARAHHDMK*
Ga0066665_1128380123300006796SoilSPQKDKPAEVDRAEQSLHTAKGELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0066659_1055732613300006797SoilFQKDKPAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0066659_1142759233300006797SoilGELEKAGTEWGGHRVAAIKHIDAALKELEQAEAWARQHHEMK*
Ga0066660_1058802723300006800SoilAKNELEHAGTEWGGHRVQAIKHIDAALHELEQAEQWAREHHDIK*
Ga0066660_1136607613300006800SoilAKNELERAGTEWGGHRVQAIKHIDAALHELEEAERWAREHHDIK*
Ga0075425_10057658413300006854Populus RhizosphereAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK*
Ga0075435_10032709213300007076Populus RhizosphereSAPFQKDKPAEVDRAEQSLQTAKRELEGAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK*
Ga0066710_10153343413300009012Grasslands SoilLRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK
Ga0066710_10207298113300009012Grasslands SoilELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0066710_10322628213300009012Grasslands SoilGELEKAGTEWGGHRVAAIKHIDAALKELEQAEAWARQHHEMK
Ga0099829_1050397223300009038Vadose Zone SoilQRDKPGEVDRAERSLQTAKNELERAGTEWGGHRVQAIKHIDAALHELEEAERWAREHHDIK*
Ga0099828_1065744613300009089Vadose Zone SoilLEHAGNEWGGHRVQAIKHIDAALHELDLAEQWAREHRDIK*
Ga0099828_1076074813300009089Vadose Zone SoilVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK*
Ga0099828_1163241013300009089Vadose Zone SoilPGEVESARRALQGARNDLEHAGGEWGGHRAEAIKHIDAALKELGEAEKWAREHHDIK*
Ga0066709_10128680713300009137Grasslands SoilPFQKDKPAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK*
Ga0126373_1161066613300010048Tropical Forest SoilSVFPEPQRRDVVADIESARQRLRNARNDLEHAGGEWGGHRVNAMNHIDQAIKELDEAEHWAREHHDIR*
Ga0126373_1320605713300010048Tropical Forest SoilMSAMLISTALSLTPQKDVPAKVDSARQALQNARNQLDHAGGEWGGHRVNAMKHIDEALNELNQAEKWAKEHHEM*
Ga0134088_1038650133300010304Grasslands SoilDKPAEVDRAQQSLQTAKNELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0134062_1019244823300010337Grasslands SoilSAPFQKDKPAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEAWARQHHEIK*
Ga0126370_1190710313300010358Tropical Forest SoilNTARGALKGAYNDLQHAGGEWGGHRAKAMEHIQAAMTELNEAEKWAKEHHDIK*
Ga0126372_1301080713300010360Tropical Forest SoilVDSARQALRGALNDLQHAGSEWGGHRAAAMHHIDEALKELNEAEKFFHEHHQEKK*
Ga0126378_1053869433300010361Tropical Forest SoilVPMEVISARDRLKNARNDLAKAGGEWGGHREAAIKHIDEALKELGEAEKWAHEHHEVK*
Ga0126379_1072494913300010366Tropical Forest SoilMPDRVDSARGALKGAYNDLQHAGGEWGGHRVKAMDHIQAAINELNEAEKWAKEHHDAK*
Ga0126379_1147347913300010366Tropical Forest SoilAAPLLSDPPQRDVPADVERARERLTGARHDLDQAGGEWGGHRVAAIKHIDEALRELGEAEKWAREHHDIK*
Ga0126379_1221213713300010366Tropical Forest SoilARTALKGAYNDLQHAGGEWGGHRANAMNHIQEALRELNEAEKWAKEHHDVK*
Ga0134128_1290012713300010373Terrestrial SoilMFPEPQQRDVPAEVESAKQALHNARNELQHAGGEWGGHRAAAVKHIDEALRELNEGERWAREHHEIR*
Ga0126381_10112001613300010376Tropical Forest SoilEVNTARGALKGAYNDLQHAGGEWGGHRAKAMEHIQAAMTELNEAEKWAKEHHDIK*
Ga0126381_10449811313300010376Tropical Forest SoilARNDLEHAGGDWGGHRAAAMNHIDQALKELNEAEKFARQHHEMK*
Ga0134126_1219215713300010396Terrestrial SoilNAHNELEHAGGQWGGHRVAAMKHIQQALTELNEAENWARAHHDMK*
Ga0137364_1098392513300012198Vadose Zone SoilELEGAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK*
Ga0137382_1013620713300012200Vadose Zone SoilVDRAERSLQTAKNELERAGTEWGGHRVQAIKHIDAALHELEEAERWAREHHDIK*
Ga0137382_1094117613300012200Vadose Zone SoilQKDKPAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137365_1121189713300012201Vadose Zone SoilVRNRVYIPGGHRVAAIKHIDAVLQELEKAEDWARQHHEIK*
Ga0137380_1112459113300012206Vadose Zone SoilPAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK*
Ga0137377_1041405113300012211Vadose Zone SoilDRAEQSLQTAKKELEGAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK*
Ga0137387_1018630813300012349Vadose Zone SoilAEVDRAQQSLQTAKNELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137387_1059346213300012349Vadose Zone SoilVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQH
Ga0137387_1107257413300012349Vadose Zone SoilAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137386_1013836043300012351Vadose Zone SoilLQTAKNELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137386_1064999623300012351Vadose Zone SoilVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137386_1098376013300012351Vadose Zone SoilAARRALQGARNDLEHAGGEWGGHRVSAMKHIDEPIKELNEAEKYAREHHDIK*
Ga0137366_1020946633300012354Vadose Zone SoilDKPAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137384_1018772133300012357Vadose Zone SoilLQDRAEQRVQTAKKELEGAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK*
Ga0137385_1028060313300012359Vadose Zone SoilLQNAHNELEHAGGQWGGHRVTAMNHIEKAIAELNEAEKWAREHHDMK*
Ga0137385_1040918423300012359Vadose Zone SoilAEQSLQTAKGELEKAGTEWGGHRVAAIKHIDAALQELEKAEDWARQHHEIK*
Ga0137390_1175465213300012363Vadose Zone SoilLLPEPPQKEVPAEMEAARRGLESARNDLVHAGGDWGGHRMGAVNHIDAALKEIGEAEKWAREHHDIK*
Ga0137373_1084286713300012532Vadose Zone SoilTAKGELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0137359_1038884413300012923Vadose Zone SoilKPAEVDRAEQSLRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK*
Ga0134110_1030088113300012975Grasslands SoilEVDRAEQSLHTAKGELEKAGTEWGGHRVAAIKHIDAALKELEQAEAWARQHHEMK*
Ga0134110_1031346823300012975Grasslands SoilEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0134076_1040080013300012976Grasslands SoilAEVDRAEQSLHTAKGELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK*
Ga0164304_1043513123300012986SoilEVESAKQALHNARNELQHAGGEWGGHRAAAVKHIDEALRELNEGERWAREHHEIR*
Ga0134081_1010897113300014150Grasslands SoilTAKGELEKAGTEWGGHRVAAIKHIDAALKELEQAEAWARQHHEIK*
Ga0134079_1061498823300014166Grasslands SoilARNDLEHAGGQWGGHRVAAMNHIDAALKELGEAEKWARAHRDIK*
Ga0134085_1017778313300015359Grasslands SoilPAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEAWARQHHEIK*
Ga0132256_10105124813300015372Arabidopsis RhizosphereTLFSSAPQRDVPGEVDAARHALQGARNDLEHAGGEWGGHRVAAMKHIDEALRELSEAEKFAHEHHEIK*
Ga0134074_134314013300017657Grasslands SoilTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEAWARQHHEIK
Ga0066655_1062854023300018431Grasslands SoilEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0066667_1129799923300018433Grasslands SoilGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0210400_1092262523300021170SoilPEPPQRDVPAEMESARHALGGARNELVDAGGDWGGHRVGGNHIDADLKEIGEAEKWGREHPDIR
Ga0210397_1005565543300021403SoilPQKDVPVEVESAKRALQSARSDLAKAGAGWGGHRYTAMTHIDAALKELDEAEKWAREHHDIK
Ga0210402_1033181613300021478SoilNLFPSTPQQRDVPADVEAARRALQGARNDLEHAGGEWGGHRVAAMKHIDEAVRELNEAERWAKEHHDIK
Ga0207685_1014850023300025905Corn, Switchgrass And Miscanthus RhizosphereMTRRNPSAPQRDVPGEVDAARRSLQGARNDLEHAGGEWGGHRVAAMKHIDEAIKELNEAEKYAREHHDMK
Ga0207699_1098145323300025906Corn, Switchgrass And Miscanthus RhizosphereVESARSALRNAKSELEHAGAQWGGHRVAAMHHIDQALGELNEAEKWARAHHDMK
Ga0207660_1062609023300025917Corn RhizosphereAEVENARRALQNANNELQHAGGQWGGHRVAAMHHIEQALGELNQAEKWAREHHDMK
Ga0207646_1067456113300025922Corn, Switchgrass And Miscanthus RhizosphereALRTAKGELEHAGGEWGGHRVQAMKHIYAALHELEQAEQWARQHHDIK
Ga0207665_1005861013300025939Corn, Switchgrass And Miscanthus RhizospherePAEVDRAEQSLQTAKKELEGAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK
Ga0207702_1001172413300026078Corn RhizosphereEHAGGQWGGHRVAAMKHIQQALAELNEAENWARAHHDMK
Ga0209055_116326223300026309SoilFQKDKPAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0209239_134760313300026310Grasslands SoilLEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK
Ga0209761_103822513300026313Grasslands SoilEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK
Ga0209471_101939513300026318SoilFSSPQKDKPAEVDRAEQSLHTAKGELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0209470_136342313300026324SoilAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK
Ga0209801_112934313300026326SoilSSPQKDKPAEVDRAEQSLHTAKGELEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0209266_129504213300026327SoilAEVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEAWARQHHEIK
Ga0209803_130750023300026332SoilEHAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0209159_120045513300026343SoilSATLFSSPQKDKPAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK
Ga0257168_102462323300026514SoilRDLPAEMEAARRGLEGARNELVHAGGDWGGHRMVAISHIDAALKEIGEAEKWARAHHDIK
Ga0209807_104407333300026530SoilALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK
Ga0209056_1014508733300026538SoilQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWAREHHDIK
Ga0209161_1015868213300026548SoilVDRAEQSLQTAKGELEKAGTEWGGHRVQAIKHIDAALKELEQAEQWARQHHDIK
Ga0209523_111487913300027548Forest SoilGTEWGGHRVQAIKHIDAALHELEEAERWAREHHEIK
Ga0209689_120295613300027748SoilKDKPAEVDRAEQALRTAKGELEHAGGEWGGHRVQAMKHIDAALHELEQAEQWARQHHDIK
Ga0209180_1035158723300027846Vadose Zone SoilQRDKPGEVDRAERSLQTAKNELERAGTEWGGHRVQAIKHIDAALHELEEAERWAREHHDI
Ga0209583_1012191813300027910WatershedsRALQGARNDLEHAGGQWGGHRVAAKHIDEALRELKEAEMYAREHHDIR
Ga0209168_1026936833300027986Surface SoilRRALQGAHNDLEHAGGQWGGHRVAAMKHIEEALKELGEAEKYAREHHDIK
Ga0170823_1165171323300031128Forest SoilLLPEPPQKDVPVEVESAKRALQSARNDLAKAGAGWGGHRYTAMTHIDAALKELDEAEKWAREHHDIK
Ga0310813_1209969713300031716SoilPEPQQRVVPAEVESAKLALHNARNELQHAGGEWGGHRAAAVKHIDEALRELNEGERWAREHHEIR
Ga0306918_1062308723300031744SoilTAAQNALKGAYNDLQHAGGDWGGHRVSAMQHIQEALTELNEAEKWAREHHDIK
Ga0307477_10000982243300031753Hardwood Forest SoilDVPAEVEAARRGLEGARNDLAHAGGDWGGHRMQAINHIDAALKEIGEAEKWAREHHDIK
Ga0307473_1008453613300031820Hardwood Forest SoilAEQSLQTAKKELEGAGAEWGGHRVQAIKHIDAALHELELGEQWARQHHDIK
Ga0307478_1067869913300031823Hardwood Forest SoilALEGARNDLVHAGGDWGGHRMGAVNHIDAALKEIGEAEKWAREHHDIK
Ga0318520_1040268323300031897SoilSARKALESARNDLNHAGGEWGGHRAAAVQHIDQAIKELNEAEKFAREHHDIK
Ga0310916_1023958043300031942SoilLKGAYNDLQHAGGDWGGHRVSAMQHIQEALTELNEAEKWAREHHDIK
Ga0307470_1044705213300032174Hardwood Forest SoilQPPQRDVPGEVDSARNALKQAHNELQHAGGEWGGHRVKAMQHIQEAIAELNEAEKWAREHHEIK


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