NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F068001

Metagenome / Metatranscriptome Family F068001

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F068001
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 45 residues
Representative Sequence MEAAKSLERSREGLPGVWGAERIEGGGGNWGGPPRPGDLRIVSPERGVL
Number of Associated Samples 117
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 37.60 %
% of genes near scaffold ends (potentially truncated) 65.60 %
% of genes from short scaffolds (< 2000 bps) 80.00 %
Associated GOLD sequencing projects 109
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.600 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(10.400 % of family members)
Environment Ontology (ENVO) Unclassified
(20.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF00078RVT_1 21.60
PF08388GIIM 10.40
PF00872Transposase_mut 2.40
PF01348Intron_maturas2 1.60
PF07366SnoaL 0.80
PF00441Acyl-CoA_dh_1 0.80
PF01872RibD_C 0.80
PF13683rve_3 0.80
PF13358DDE_3 0.80
PF00296Bac_luciferase 0.80
PF04203Sortase 0.80
PF00005ABC_tran 0.80
PF02371Transposase_20 0.80
PF13701DDE_Tnp_1_4 0.80
PF00535Glycos_transf_2 0.80
PF02441Flavoprotein 0.80
PF13602ADH_zinc_N_2 0.80
PF00440TetR_N 0.80
PF00400WD40 0.80
PF02852Pyr_redox_dim 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG3328Transposase (or an inactivated derivative)Mobilome: prophages, transposons [X] 2.40
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.80
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.80
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.80
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.80
COG3547TransposaseMobilome: prophages, transposons [X] 0.80
COG3764Sortase (surface protein transpeptidase)Cell wall/membrane/envelope biogenesis [M] 0.80

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.60 %
UnclassifiedrootN/A2.40 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_111360559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae712Open in IMG/M
3300001867|JGI12627J18819_10373191All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria578Open in IMG/M
3300002563|JGI24138J36424_10110642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales650Open in IMG/M
3300004479|Ga0062595_102375258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia525Open in IMG/M
3300004633|Ga0066395_10571345All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia660Open in IMG/M
3300004635|Ga0062388_101125213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora772Open in IMG/M
3300005169|Ga0066810_10040199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia876Open in IMG/M
3300005181|Ga0066678_10362254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia958Open in IMG/M
3300005331|Ga0070670_100845488All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora828Open in IMG/M
3300005332|Ga0066388_101453134All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300005332|Ga0066388_101458962All Organisms → cellular organisms → Bacteria1193Open in IMG/M
3300005436|Ga0070713_101021830All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia798Open in IMG/M
3300005436|Ga0070713_101912801All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria575Open in IMG/M
3300005437|Ga0070710_10302943All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1043Open in IMG/M
3300005437|Ga0070710_11361426All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia529Open in IMG/M
3300005445|Ga0070708_100365227All Organisms → cellular organisms → Bacteria1360Open in IMG/M
3300005467|Ga0070706_101916502All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces537Open in IMG/M
3300005541|Ga0070733_10160640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1460Open in IMG/M
3300005555|Ga0066692_10446963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae823Open in IMG/M
3300005559|Ga0066700_10930650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium album576Open in IMG/M
3300005560|Ga0066670_10279887All Organisms → cellular organisms → Bacteria → Terrabacteria group1013Open in IMG/M
3300005576|Ga0066708_10679363All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora654Open in IMG/M
3300005598|Ga0066706_10872466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia704Open in IMG/M
3300005712|Ga0070764_10575039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia685Open in IMG/M
3300005764|Ga0066903_105010069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora703Open in IMG/M
3300006034|Ga0066656_11121680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia506Open in IMG/M
3300006052|Ga0075029_100929446All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia598Open in IMG/M
3300006102|Ga0075015_100409560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales767Open in IMG/M
3300006175|Ga0070712_100293280All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1314Open in IMG/M
3300006573|Ga0074055_11843989All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium826Open in IMG/M
3300006576|Ga0074047_12074230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora907Open in IMG/M
3300006580|Ga0074049_12809902All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia556Open in IMG/M
3300006606|Ga0074062_13026421All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora561Open in IMG/M
3300006791|Ga0066653_10387836All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora713Open in IMG/M
3300006806|Ga0079220_10936982All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria678Open in IMG/M
3300006847|Ga0075431_101099567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia760Open in IMG/M
3300006969|Ga0075419_10800552All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora674Open in IMG/M
3300009095|Ga0079224_100415764All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1933Open in IMG/M
3300009520|Ga0116214_1036885All Organisms → cellular organisms → Bacteria1766Open in IMG/M
3300009521|Ga0116222_1020297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3014Open in IMG/M
3300009523|Ga0116221_1021801All Organisms → cellular organisms → Bacteria3336Open in IMG/M
3300009792|Ga0126374_10023446All Organisms → cellular organisms → Bacteria2756Open in IMG/M
3300009840|Ga0126313_11569808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria548Open in IMG/M
3300010047|Ga0126382_11286785All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria660Open in IMG/M
3300010358|Ga0126370_11701132All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria607Open in IMG/M
3300010360|Ga0126372_10141131All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1905Open in IMG/M
3300010362|Ga0126377_10539584All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales1203Open in IMG/M
3300010376|Ga0126381_101147527All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1123Open in IMG/M
3300010376|Ga0126381_102587567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria726Open in IMG/M
3300010379|Ga0136449_101259321All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1158Open in IMG/M
3300011089|Ga0138573_1209663All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium album697Open in IMG/M
3300012188|Ga0136618_10492403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia530Open in IMG/M
3300012199|Ga0137383_10080772All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2349Open in IMG/M
3300012201|Ga0137365_10273617All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora1254Open in IMG/M
3300012201|Ga0137365_11083774All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium album578Open in IMG/M
3300012201|Ga0137365_11247761All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium album529Open in IMG/M
3300012204|Ga0137374_11248442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia516Open in IMG/M
3300012206|Ga0137380_10024220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5587Open in IMG/M
3300012208|Ga0137376_10509838All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1043Open in IMG/M
3300012211|Ga0137377_11016532All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria760Open in IMG/M
3300012350|Ga0137372_10004746All Organisms → cellular organisms → Bacteria13270Open in IMG/M
3300012355|Ga0137369_10819999All Organisms → cellular organisms → Bacteria → Terrabacteria group632Open in IMG/M
3300012359|Ga0137385_10943844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria712Open in IMG/M
3300012409|Ga0134045_1100324All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria588Open in IMG/M
3300012532|Ga0137373_10005868All Organisms → cellular organisms → Bacteria13213Open in IMG/M
3300012902|Ga0157291_10008398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1739Open in IMG/M
3300012930|Ga0137407_10080913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2737Open in IMG/M
3300012977|Ga0134087_10023134Not Available2292Open in IMG/M
3300012987|Ga0164307_11115501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia649Open in IMG/M
3300013765|Ga0120172_1134644All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium album590Open in IMG/M
3300013772|Ga0120158_10066395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2362Open in IMG/M
3300014152|Ga0181533_1154696All Organisms → cellular organisms → Bacteria933Open in IMG/M
3300014166|Ga0134079_10328144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora689Open in IMG/M
3300014839|Ga0182027_10183320All Organisms → cellular organisms → Bacteria2441Open in IMG/M
3300016387|Ga0182040_11269231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria621Open in IMG/M
3300017925|Ga0187856_1031234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes2534Open in IMG/M
3300017926|Ga0187807_1095813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria932Open in IMG/M
3300017928|Ga0187806_1381816All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia506Open in IMG/M
3300017938|Ga0187854_10465506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis526Open in IMG/M
3300017961|Ga0187778_10242099All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1157Open in IMG/M
3300017972|Ga0187781_10005202All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria9641Open in IMG/M
3300017974|Ga0187777_10036159All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3171Open in IMG/M
3300017975|Ga0187782_10090672All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2244Open in IMG/M
3300017996|Ga0187891_1242436All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia601Open in IMG/M
3300018007|Ga0187805_10619034All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia512Open in IMG/M
3300018017|Ga0187872_10132726All Organisms → cellular organisms → Bacteria → Terrabacteria group1209Open in IMG/M
3300018022|Ga0187864_10146903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1169Open in IMG/M
3300018053|Ga0184626_10021342All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2631Open in IMG/M
3300018072|Ga0184635_10068021All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1389Open in IMG/M
3300018078|Ga0184612_10290934All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria838Open in IMG/M
3300019259|Ga0184646_1058967All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria717Open in IMG/M
3300021178|Ga0210408_10275831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1340Open in IMG/M
3300021403|Ga0210397_10894227All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria687Open in IMG/M
3300021474|Ga0210390_10077679All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2749Open in IMG/M
3300025721|Ga0209587_1214208All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia506Open in IMG/M
3300025915|Ga0207693_10241672All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1417Open in IMG/M
3300026494|Ga0257159_1079428All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria568Open in IMG/M
3300026551|Ga0209648_10093756All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2476Open in IMG/M
3300027497|Ga0208199_1095815All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium album615Open in IMG/M
3300027570|Ga0208043_1035822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1507Open in IMG/M
3300027570|Ga0208043_1147120All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria616Open in IMG/M
3300027604|Ga0208324_1199655All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia531Open in IMG/M
3300027641|Ga0208827_1019086All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2546Open in IMG/M
3300027874|Ga0209465_10055401All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1903Open in IMG/M
3300028778|Ga0307288_10193349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae781Open in IMG/M
3300030056|Ga0302181_10135514All Organisms → cellular organisms → Bacteria1188Open in IMG/M
3300030619|Ga0268386_10611841All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis725Open in IMG/M
3300031234|Ga0302325_10499088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1840Open in IMG/M
3300031473|Ga0272434_1058425All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales3067Open in IMG/M
3300031543|Ga0318516_10041640Not Available2472Open in IMG/M
3300031573|Ga0310915_10905255All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria618Open in IMG/M
3300031713|Ga0318496_10813104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia515Open in IMG/M
3300031724|Ga0318500_10016157All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii2753Open in IMG/M
3300031890|Ga0306925_10795183Not Available982Open in IMG/M
3300031910|Ga0306923_12195375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria554Open in IMG/M
3300032013|Ga0310906_10642926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria735Open in IMG/M
3300032043|Ga0318556_10121901All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1333Open in IMG/M
3300032059|Ga0318533_11009513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora610Open in IMG/M
3300032160|Ga0311301_10288825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium2644Open in IMG/M
3300032828|Ga0335080_10156844All Organisms → cellular organisms → Bacteria2519Open in IMG/M
3300032895|Ga0335074_10222339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2265Open in IMG/M
3300032896|Ga0335075_10772823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces caelestis907Open in IMG/M
3300032954|Ga0335083_10968804All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia671Open in IMG/M
3300032954|Ga0335083_11019537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria650Open in IMG/M
3300034065|Ga0334827_223158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia557Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.40%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.20%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.40%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.60%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.20%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.20%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.40%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.40%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.40%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.60%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil1.60%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.60%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.60%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.60%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.80%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.80%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.80%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.80%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Agricultural Soil0.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.80%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.80%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.80%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.80%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.80%
RockEnvironmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300002563Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-312EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006576Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009095Agricultural soil microbial communities from Utah to study Nitrogen management - Steer compost 2015EnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011089Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012188Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012409Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012902Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013765Permafrost microbial communities from Nunavut, Canada - A30_80cm_6MEnvironmentalOpen in IMG/M
3300013772Permafrost microbial communities from Nunavut, Canada - A10_80_0.25MEnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017996Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300025721Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL1-D (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026494Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-AEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300027497Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027570Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300028778Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142EnvironmentalOpen in IMG/M
3300030056Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3EnvironmentalOpen in IMG/M
3300030619Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031473Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nordEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032895Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300034065Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 1-5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11136055913300000956SoilWKRSREGLPGVWGAERADSGGGNWGGPPRPGNLRKSLLERRAL*
JGI12627J18819_1037319123300001867Forest SoilLPGVWGAERIEGGGGNWGGPPRPGDLRFMSPERGVL*
JGI24138J36424_1011064233300002563Arctic Peat SoilMEAVKTLEGSREGLPGVWGAERSDGDGGNWGGPPRSGDLRMCRRSGV
Ga0062595_10237525813300004479SoilVKAMEAVKILEGSREGLPGVRGSERPDSGGGNWRGPPRPGDLRMVSPERRAL*
Ga0066395_1057134513300004633Tropical Forest SoilKSGRRPWKRRRAWKRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRIVLPERGVL*
Ga0062388_10112521313300004635Bog Forest SoilMEAVEILECSREELPGVEGAERSDGGGGNWGGPPRPGSLR
Ga0066810_1004019923300005169SoilVKAMEAAKILEDSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMVSPERRAL*
Ga0066678_1036225413300005181SoilMEAAKSLEAQPEELPGVWGAERIEGGGGNWGGPPRPGSLRFLLPERGVL*
Ga0070670_10084548813300005331Switchgrass RhizosphereMEAVESLECSREGLLGVWDAERSDGGGGNWGGPPRPGDLR*
Ga0066388_10145313433300005332Tropical Forest SoilRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRMVLPERGVL*
Ga0066388_10145896213300005332Tropical Forest SoilREGLPGVWGAERIEGGGGNWGGPPRPGSLRIVLPERGVL*
Ga0070713_10102183013300005436Corn, Switchgrass And Miscanthus RhizosphereVKAMEAVKILEDSREGLPGVRGPERPDSDGGNWRGPPRPGDLRMVSPERRAL*
Ga0070713_10191280113300005436Corn, Switchgrass And Miscanthus RhizosphereWKRSREGLPGVWGAERIEGGGGNWGGPPRPGDLRSVSPERGVL*
Ga0070710_1030294313300005437Corn, Switchgrass And Miscanthus RhizosphereMEAVKCLERSREELPGVWGAERIEGGGGNWGGPPRPGDLRIMSPERG
Ga0070710_1136142623300005437Corn, Switchgrass And Miscanthus RhizosphereMEAVKILEDSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMV
Ga0070708_10036522723300005445Corn, Switchgrass And Miscanthus RhizosphereMEAVQSLEASREGLPGVWDAERIEGGGGNWGGPPRPGDLRIMSSERGVL*
Ga0070706_10191650213300005467Corn, Switchgrass And Miscanthus RhizospherePWKRRRAWKRSREELPGVWGAERIEGGGGNWGGPPRPGSLRMLLPERGVL*
Ga0070733_1016064023300005541Surface SoilMEAVQSLDCSREGLPGVWGAERIEGGGGNWGGPPRPGDLRMLSPERGVL*
Ga0066692_1044696313300005555SoilWKRSREGLPGVWGAERIEGGGGNWGGPPRPGGLRFLLLPERGVL*
Ga0066700_1093065013300005559SoilMEAAKSLERSREELPGVWGAERIEGGGGNWGALPGPAACGFLLPERGVL*
Ga0066670_1027988723300005560SoilLDRSPDELPGVEGAERSDGGGGNWGALPGPTVCGLVLSERGAL*
Ga0066708_1067936313300005576SoilMEAVQSLEASREELPGVWGAERIDGGGGNWGGPPRPGDLRIMSPERGVL*
Ga0066706_1087246633300005598SoilMEGVKSLDRGPEEPPGVWGVERSEGGGGNWGGPPR
Ga0070764_1057503923300005712SoilVKAMEAVQSLECSREGLPGVWGAERIDGGGGNWGGPPRPGSLRMLSPERGVL*
Ga0066903_10501006923300005764Tropical Forest SoilMEAVQSLEASREELPGVWGAERIEGGGGNWGGPPRPGSLR
Ga0066656_1112168023300006034SoilMEGVKSLERSPEELPGVEGVERSDGGGGNWGGPPRPGG
Ga0075029_10092944623300006052WatershedsVKAMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMVSPERRAL*
Ga0075015_10040956023300006102WatershedsVKAMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMVSPERGVL*
Ga0070712_10029328013300006175Corn, Switchgrass And Miscanthus RhizosphereMEAVKILEDSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMVSPERRAL*
Ga0074055_1184398923300006573SoilMEAVQSLEAQPEGLPGVWGTERIDGDGGNWGGPPRPGSLRLL
Ga0074047_1207423023300006576SoilMEAVQSLEASREELPGVWGAERIEGGGGNWGGPPRPGDLRIMSPERGVL*
Ga0074049_1280990223300006580SoilMEAVKILEDSREGLPGVRGSERPDSDGGNWRGPPRPGDLR
Ga0074062_1302642113300006606SoilMEAAKSLERSREELPGVWGAERIEGGGGNWGGPPRPGGLRIMSPERGVL*
Ga0066653_1038783613300006791SoilMEAAKSLERSREGLPGVWGAERIEGGGGNWGGPPRPGDLRIVSPERGVL*
Ga0079220_1093698213300006806Agricultural SoilREELPGVGGAERIEGGGGNWGGPPRPGDLRILLPERGVL*
Ga0075431_10109956713300006847Populus RhizosphereGLLGVWGAERSDSGGGNWGDPPRPGNLRLVLPERGVL*
Ga0075419_1080055213300006969Populus RhizosphereMEAVKSLGCSREELLGVWGAERSDGGGGNWGGPPRPGDLR*
Ga0079224_10041576413300009095Agricultural SoilEPGSSREELPGVWGAERADSGGGNWGGPPRPSDLRKLLLERRTL*
Ga0116214_103688523300009520Peatlands SoilMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMVSPERRAL*
Ga0116222_102029753300009521Peatlands SoilMEAVKILEDSREGLPGVRGSERPDSGGGNWRGPPRPGDLRMVSPERRAL*
Ga0116221_102180123300009523Peatlands SoilMEAVKTLEGSREGLPGVRGSERPDSGGGNWRGPPRPGDLRMVSPERRAL*
Ga0126374_1002344623300009792Tropical Forest SoilMEAVQSLEASREELPGVWGAERIEGGGGNWGGPPRPGSLRMVLPERGVL*
Ga0126313_1156980823300009840Serpentine SoilYEGAERSDSDGGNWGDPPRPGDLRSGVLPERGVL*
Ga0126382_1128678523300010047Tropical Forest SoilGLPGVWGAERIEGGGGNWGGPPRPGSLRIVLPERGVL*
Ga0126370_1170113213300010358Tropical Forest SoilSREGLPGVWGVERIEGGGGNWGGPPRPGSLRILLPERGVL*
Ga0126372_1014113113300010360Tropical Forest SoilRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRIVLPERGVL*
Ga0126377_1053958433300010362Tropical Forest SoilMEAVQSLDGSREGLPGVWGAERIEGGGGNWGGPPRPGSLRIVLPERGVL*
Ga0126381_10114752713300010376Tropical Forest SoilRAWKRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRIVLPERGVL*
Ga0126381_10258756713300010376Tropical Forest SoilRAWKRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRILLPERGVL*
Ga0136449_10125932123300010379Peatlands SoilWKRSREGLPGVWGAERIEGGGGNWGGPPRPGDLRKVSPERGVL*
Ga0138573_120966323300011089Peatlands SoilMEAVQSLERSREGLPGVWGAERIEGGGGNWGGPPR
Ga0136618_1049240313300012188Polar Desert SandMEGVKSLDHSPEELPGVEGVERSDGDGGNWGGPPRPGG
Ga0137383_1008077233300012199Vadose Zone SoilRAWKRSREGLPGVWGAERIEGGGGNWGGPPRPGDLRITSSERGVL*
Ga0137365_1027361713300012201Vadose Zone SoilMEAVQILDCSREGLPGVWGAERIEGGGGNWGGPPRPGGLRILLPERGVL*
Ga0137365_1108377413300012201Vadose Zone SoilMEAVQSLARSREGLPGVWGAERIEGDGGNWGGPPRPGGLR
Ga0137365_1124776123300012201Vadose Zone SoilMEGAKTLDRSPEEPPGVEGVERSEGGGGNWGGPTRPGGLRTVVVGAA
Ga0137374_1124844213300012204Vadose Zone SoilMEGMKSLDRGPEEPPGVWGVERSEGGGGNWGGPPRPGGL
Ga0137380_1002422023300012206Vadose Zone SoilMEAVQSLECSREGLPGVWGAERIDGDGGNWGGPPRPGDLRMCLPERGVL*
Ga0137376_1050983823300012208Vadose Zone SoilAVKSLERSREELPGVEGVERAEGDGGNWGGPPRSMRAA*
Ga0137377_1101653223300012211Vadose Zone SoilAEPGSSREELPGVWGAERIEGGGGNWGGPPRPGDLRILSPERGVL*
Ga0137372_10004746133300012350Vadose Zone SoilMEGMKSLDRGPEEPPGVWGVERSEGGGGNWGGPPRPGGLWRFAV
Ga0137369_1081999923300012355Vadose Zone SoilMEGVKSLDRGPEEPPGVWGVERSEGGGGNWGGPPRP
Ga0137385_1094384413300012359Vadose Zone SoilREGLPGVWGAERIEGGGGNWGGPPRPGGLRFLLPERGVL*
Ga0134045_110032413300012409Grasslands SoilPEIRVKAMEAVESLERSREGLLGVWGAERSEGGGGNWGGPPRPGGLRIVLPERGVL*
Ga0137373_10005868133300012532Vadose Zone SoilMEGMKSLDRGPEEPPGVWGVERSEGGGGNWGGPPRPGGLWRFAVGV
Ga0157291_1000839813300012902SoilARADGAKAMEAVQILDGSREGLPGVRGAERIDGGGGNWGGPPRPGDLRMVLLERRAL*
Ga0137407_1008091323300012930Vadose Zone SoilMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPQPGDLRMVSPERRAL*
Ga0134087_1002313413300012977Grasslands SoilEELPGVEGVERSDGDGGNWGGPPRPGSLRLVLSERRVL*
Ga0164307_1111550113300012987SoilMEAVESLERSREELLGVWGAERSEGGGGNWGGPPRPGGLRMVLSERRVL*
Ga0120172_113464413300013765PermafrostMEAVKNLESSRDGLPGVGGVERSEGDGGNWGGRPRPGVC
Ga0120158_1006639543300013772PermafrostMEAVKTLEGSREGLPGVWGSERSDGDGGNWGGPPRPGDLR
Ga0181533_115469633300014152BogMEAVKNLDRSREELLGVVGAERSEGDGGNWGGPPR
Ga0134079_1032814413300014166Grasslands SoilMEAAKSLERSREELPGVGGAERIEGGGGNWGGPPRPGSLRMVLPERGVL*
Ga0182027_1018332023300014839FenMEVVKSLDRSHEELPGVVGAERSEGDGGNWGGPPRPKRLRVRGRDRSHNR*
Ga0182040_1126923113300016387SoilWKRSREGLPGVWGAERIDSDGGNWGGPPRPGSLRIVLPESGVL
Ga0187856_103123443300017925PeatlandMEAVENLDRSREELLGVVGAERSEGDGGNWGGPPRPKRLRVRGQGSFYNR
Ga0187807_109581323300017926Freshwater SedimentMEAVQNLDCSREGLPGVWGAERIEGGGGNWGGPPRPGGLRILLPERGIL
Ga0187806_138181613300017928Freshwater SedimentMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPRPGDLRM
Ga0187854_1046550613300017938PeatlandMEVVKNLDRSHEELPGVVGAERSEGDGGNWGGPPRPKR
Ga0187778_1024209923300017961Tropical PeatlandVQSLERSREELPGVGGAERIEGGGGNWGGPPRPGRLRMVLPERGVL
Ga0187781_1000520213300017972Tropical PeatlandAMEAVKILDGSREELPGVWGVERPEGGDGNWGGPPRPGGLREMPPERRVL
Ga0187777_1003615943300017974Tropical PeatlandSREELPGVGGAERIEGGGGNWGGPPRPGRLRMVLPERGVL
Ga0187782_1009067213300017975Tropical PeatlandMEAVKILDGSREELPGVWGVERPEGGDGNWGGPPRPGGLREMPPERRVL
Ga0187891_124243613300017996PeatlandMEVVKSLDRSHEGLPDVEGAERSEGDGGNWGGPPRPKRLR
Ga0187805_1061903413300018007Freshwater SedimentMEAVKILERSREELPGVEGAERIDGGGGNWRGPPRTKRAA
Ga0187872_1013272623300018017PeatlandSLGAKAMEVVKNLDRSHEELPGVVGAERSEGDGGNWGGPPRPKRLRVRGRDRSYNR
Ga0187864_1014690323300018022PeatlandMEVVKSLDRSHEGLPDVEGAERSEGDGGNWGGPPR
Ga0184626_1002134223300018053Groundwater SedimentMEAVKILEGSREGLPGVWGAERSEGDGGNWGGPPRPGDLRMVSPERRAL
Ga0184635_1006802123300018072Groundwater SedimentMEAVQILECSREGLPGVWGAERIDGGGGNWGGPPRPGDLRIVSPERGVL
Ga0184612_1029093423300018078Groundwater SedimentMEAVKILEGSREGLPGVWGAERSEGDGGNWGGPPRPGDLRMVSLERRAL
Ga0184646_105896713300019259Groundwater SedimentGSREGLPGVWGSERSEGDGGNWGGPPRPGDLRMVSLERRAL
Ga0210408_1027583113300021178SoilEGHGSGAEPGSSREELPGVWGAERIEGGGGNWGGPPRPGDLRILSPERGVL
Ga0210397_1089422713300021403SoilPGVEGAERIEGGGGNWGGPPRPGSLRMLLPERGVL
Ga0210390_1007767933300021474SoilMEAVQSLERSGEGLPGVRGSERIDGDGGNWGGPPRPGGLRVLLPECGVL
Ga0209587_121420813300025721Arctic Peat SoilMEGAKNLERSPEELPGVEGVERTDSDGGNWGGPPRPGGLRMPPERAGPISGD
Ga0207693_1024167213300025915Corn, Switchgrass And Miscanthus RhizosphereMEAVKILEDSREGLPGVRGSERPDSDGGNWRGPPRPGDLRMVSPERRAL
Ga0257159_107942823300026494SoilRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRMLLPERGVL
Ga0209648_1009375623300026551Grasslands SoilMEAVKILEGSREGLPGVRGSERPDSGGGNWRGPPRPGDLRMVSPERRAL
Ga0208199_109581513300027497Peatlands SoilMEAVQSLERSREGLPGVWGAERIEGGGGNWGGPPRPGDLRIMSPERGVL
Ga0208043_103582233300027570Peatlands SoilMEAVKILEDSREGLPGVRGPERPDSDGGNWRGPPRPGDLRKC
Ga0208043_114712023300027570Peatlands SoilAMEAVKILEDSREGLPGVRGPERPDSDGGNWRGPPRPGDLRMVSPERRAL
Ga0208324_119965513300027604Peatlands SoilMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPRPGDLRKCH
Ga0208827_101908633300027641Peatlands SoilMEAVKTLEGSREGLPGVRGSERPDSGGGNWRGPPRPGDLRMVSPERRAL
Ga0209465_1005540123300027874Tropical Forest SoilMEAVQSLDGSREGLPGVWGAERIEGGGGNWGGPPRPGSLRMVLPERGVL
Ga0307288_1019334913300028778SoilEAVKSLERSREELPGVEGVERAEGDGGNWGGPPRSMRAA
Ga0302181_1013551423300030056PalsaGVETLGHSPDELPGVEGAERSEGGGGNWGGPTRSERLRSPRKGRAL
Ga0268386_1061184123300030619SoilMEAVKILESSREELSGVEGVERSEGDGGNWGGRPRPG
Ga0302325_1049908823300031234PalsaMEGVETLGHSPDELPGVEGAERSEGGGGNWGGPTRSERLRSPRKGRAL
Ga0272434_105842523300031473RockMQAVKSLDRSREGLLGVWGAERSEGDDGNWCGPPRSGDLRLEVSSERRVL
Ga0318516_1004164013300031543SoilMEEVKSLGCSLEELPGVEGVERSEGGGGNWGGPPRPGGVR
Ga0310915_1090525523300031573SoilEELPGVWGAERIEGGGGNWGGPPRPGSLRIFLLPERGVL
Ga0318496_1081310413300031713SoilMEAVKILEGSREGLPGVRGSERPDSDGGNWRGPPR
Ga0318500_1001615743300031724SoilLRPGSADAEELSGVWGSERIDSGGGNWRGPVRPGGLRNVLLERRAL
Ga0306925_1079518313300031890SoilMEAVLSLERSREGLPGVWGAERIEGGGGNWGSPPRPGGLRIVLPERGVL
Ga0306923_1219537513300031910SoilWKRSREGLPGVWGAERIEGGGGNWGGPPRPGSLRILLPERGVL
Ga0310906_1064292623300032013SoilGAKAMEAVQILDGSREGLPGVRGAERIDGGGGNWGGPPRPGDLR
Ga0318556_1012190133300032043SoilEGVKSLECSPEELPGVEGAERSDGGGGNWGGPPRPGDAAERSSERPVL
Ga0318533_1100951313300032059SoilMEAVQSLEASREGLPGVWGAERIEGGGGNWGGPPRPGDLRIMSPERGVL
Ga0311301_1028882523300032160Peatlands SoilMEVVKNLDRSHEGLPGVVGVERSEGDGGNWGGPPRPKQLRVCGQDRSYNR
Ga0335080_1015684413300032828SoilMEGVKSLECSPEELPGVEGVERSDGGGGNWGGPPRPGPLRLDGLELGVL
Ga0335074_1022233913300032895SoilKRCRAWKRSREGLPGVWGAERIEGGGGNWGGPPRPGDLRIMSPERGVL
Ga0335075_1077282313300032896SoilLPGVWGAERIEGGGGNWGGPPRPGDLRIMSPERGVL
Ga0335083_1096880423300032954SoilKRCRAWKRSREGLSGVWGAERIEGGGGNWVGPPRPGDLRILLPERGVL
Ga0335083_1101953713300032954SoilRSREGLPGVWGAERADSDGGNWGGPPRPGSLRIVLPESGVL
Ga0334827_223158_426_5573300034065SoilMEAVQILDCSREGLPGVWGAERIDGGGGNWGGPPRPGRLRKCCR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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