Metagenome / Metatranscriptome Family F067946

Overview

Basic Information

• Family ID: F067946
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 125
• Average Sequence Length: 42 residues
• Representative Sequence: FSFSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ
• Number of Associated Samples: 110
• Number of Associated Scaffolds: 125

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 96.00 %
• Associated GOLD sequencing projects: 105
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (76.000 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.600 % of family members)
• Environment Ontology (ENVO): Unclassified (19.200 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (54.400 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 26.15%
  Coil/Unstructured: 73.85%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF01230	HIT	55.20
PF13581	HATPase_c_2	21.60
PF01209	Ubie_methyltran	8.00

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	8.00
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	8.00

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.00 %
Unclassified	root	N/A	24.00 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.00 %
Unclassified	root	N/A	24.00 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.00 %
Unclassified	root	N/A	24.00 %

Level 4

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	76.00 %
Unclassified	root	N/A	24.00 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	76.00 %
Unclassified	root	N/A	24.00 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	49.60 %
Unclassified	root	N/A	24.00 %

Level 7

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	41.60 %
Unclassified	root	N/A	24.00 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.80 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.80 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.80 %

Level 8

Name	Rank	Taxonomy	Distribution
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	37.60 %
Unclassified	root	N/A	24.00 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.80 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.80 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	37.60 %
Unclassified	root	N/A	24.00 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.80 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.80 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomadura flavalba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	33.60 %
Unclassified	root	N/A	24.00 %
Actinospica robiniae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	0.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.80 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001356|JGI12269J14319_10138256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1074
3300003368|JGI26340J50214_10087631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	809
3300004080|Ga0062385_11057395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548
3300005435|Ga0070714_100434264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1245
3300005435|Ga0070714_100783203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	923
3300005537|Ga0070730_10327036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1001
3300005539|Ga0068853_100284263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1525
3300005541|Ga0070733_10837356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	618
3300005577|Ga0068857_101914870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	581
3300005602|Ga0070762_10997681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	574
3300005615|Ga0070702_100035186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2765
3300006028|Ga0070717_12159824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501
3300006059|Ga0075017_100959530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	665
3300006176|Ga0070765_100329757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1415
3300006176|Ga0070765_100663099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	985
3300006237|Ga0097621_100559753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1041
3300006806|Ga0079220_10449273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	861
3300006903|Ga0075426_11324657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	547
3300009090|Ga0099827_10482501	Not Available	1064
3300009177|Ga0105248_12726692	Not Available	564
3300009672|Ga0116215_1394461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	599
3300009698|Ga0116216_10602858	Not Available	662
3300009700|Ga0116217_10873832	Not Available	552
3300010303|Ga0134082_10221044	Not Available	779
3300010366|Ga0126379_13221867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	546
3300010371|Ga0134125_11461727	Not Available	745
3300010379|Ga0136449_101647462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	971
3300010379|Ga0136449_104398389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	519
3300010401|Ga0134121_11000324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821
3300010858|Ga0126345_1203547	Not Available	672
3300010867|Ga0126347_1345287	Not Available	757
3300010876|Ga0126361_10260257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	944
3300011270|Ga0137391_10589812	Not Available	933
3300012207|Ga0137381_11210317	Not Available	648
3300012351|Ga0137386_10192160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1466
3300012515|Ga0157338_1002121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1524
3300012975|Ga0134110_10450313	Not Available	578
3300013104|Ga0157370_11956036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	526
3300013307|Ga0157372_13057625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	534
3300014201|Ga0181537_10077966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2247
3300016319|Ga0182033_10682183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898
3300017821|Ga0187812_1104305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	925
3300017934|Ga0187803_10483262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	505
3300017942|Ga0187808_10044764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1862
3300017948|Ga0187847_10113235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1490
3300017972|Ga0187781_10799578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	684
3300017974|Ga0187777_10911282	Not Available	632
3300017974|Ga0187777_11477260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	503
3300017975|Ga0187782_11523565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	527
3300018034|Ga0187863_10902910	Not Available	502
3300018043|Ga0187887_10227254	Not Available	1107
3300018085|Ga0187772_11191377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	561
3300018090|Ga0187770_11236406	Not Available	604
3300018090|Ga0187770_11743455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	509
3300020582|Ga0210395_10653519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	788
3300020583|Ga0210401_10480959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104
3300021171|Ga0210405_10579493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	875
3300021171|Ga0210405_10612736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847
3300021180|Ga0210396_10263207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1531
3300021180|Ga0210396_11426017	Not Available	572
3300021402|Ga0210385_11340650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	548
3300021405|Ga0210387_10212153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1683
3300021405|Ga0210387_11280781	Not Available	634
3300021407|Ga0210383_10856754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776
3300021420|Ga0210394_10783788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833
3300021432|Ga0210384_11326210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	624
3300021474|Ga0210390_10783481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	790
3300021474|Ga0210390_10798792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	781
3300021474|Ga0210390_10810059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	775
3300021474|Ga0210390_11274086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	590
3300021477|Ga0210398_11473495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	530
3300021479|Ga0210410_11706507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	523
3300021560|Ga0126371_13720750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	514
3300022533|Ga0242662_10040418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1165
3300022734|Ga0224571_116010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	541
3300024227|Ga0228598_1132255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	508
3300025320|Ga0209171_10191778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1160
3300025914|Ga0207671_10849913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	723
3300025915|Ga0207693_11423141	Not Available	514
3300025929|Ga0207664_11234235	Not Available	666
3300026142|Ga0207698_11841411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	620
3300027117|Ga0209732_1047165	Not Available	747
3300027172|Ga0208098_1009511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	877
3300027662|Ga0208565_1128610	Not Available	748
3300027692|Ga0209530_1034021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1514
3300027855|Ga0209693_10146193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1168
3300027867|Ga0209167_10623320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	590
3300027875|Ga0209283_10854158	Not Available	555
3300027884|Ga0209275_10429505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	747
3300027889|Ga0209380_10602943	Not Available	636
3300027908|Ga0209006_10090527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2718
3300028808|Ga0302228_10174503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	984
3300028906|Ga0308309_10434417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1129
3300030524|Ga0311357_11307675	Not Available	622
3300030580|Ga0311355_10814151	Not Available	856
3300030618|Ga0311354_10172691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2337
3300030677|Ga0302317_10267752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	770
3300030730|Ga0307482_1098492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	796
3300030739|Ga0302311_10111644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2190
3300031236|Ga0302324_102922420	Not Available	571
3300031543|Ga0318516_10386011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	807
3300031545|Ga0318541_10463513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	709
3300031564|Ga0318573_10460207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	684
3300031723|Ga0318493_10702846	Not Available	567
3300031751|Ga0318494_10268053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981
3300031751|Ga0318494_10703823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	591
3300031782|Ga0318552_10575504	Not Available	575
3300031805|Ga0318497_10427867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	741
3300031821|Ga0318567_10845887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	518
3300031845|Ga0318511_10316657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	707
3300031860|Ga0318495_10261556	Not Available	773
3300031860|Ga0318495_10392635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	612
3300031879|Ga0306919_11382054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	532
3300031897|Ga0318520_10685451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	640
3300031945|Ga0310913_10293104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1147
3300032010|Ga0318569_10348597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	690
3300032261|Ga0306920_104363164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica → Actinospica robiniae	508
3300032770|Ga0335085_11156376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	825
3300032828|Ga0335080_10294377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1764
3300032828|Ga0335080_10633040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1121
3300032898|Ga0335072_10629690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1070
3300032955|Ga0335076_11454817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	572
3300033289|Ga0310914_10446547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura flavalba	1171
3300033289|Ga0310914_11031055	Not Available	723
3300033290|Ga0318519_10817278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	574

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.40%
Host-Associated	Host-Associated	9.60%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.60%
Plants	Host-Associated → Plants	9.60%
Aquatic	Environmental → Aquatic	8.80%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.00%
Freshwater	Environmental → Aquatic → Freshwater	7.20%
Peat	Environmental → Terrestrial → Peat	5.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.20%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.80%
Sediment	Environmental → Aquatic → Sediment	0.80%
Roots	Host-Associated → Plants → Roots	0.80%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.80%
Loam	Environmental → Terrestrial → Soil → Loam	13.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.20%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.20%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.80%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.20%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.20%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.40%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.80%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.60%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.60%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.60%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.60%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.20%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.40%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.40%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.40%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.40%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.40%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.40%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.40%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.60%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.80%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.80%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental
3300010379	Sb_50d combined assembly	Environmental
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022734	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3	Host-Associated
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental
3300030524	II_Palsa_N3 coassembly	Environmental
3300030580	II_Palsa_N1 coassembly	Environmental
3300030618	II_Palsa_E3 coassembly	Environmental
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101382561	3300001356	Peatlands Soil	VLGSLMNFTITIPKLPAGVAIQSISITQQGLMITATGSHVTVSQNS*
JGI26340J50214_100876313	3300003368	Bog Forest Soil	QLGNFGDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS*
Ga0062385_110573951	3300004080	Bog Forest Soil	DFGGIPTSALGNLADFTFTIPKLPSGVAIQSVSVTQQGVLVTLTGHDTLLSKNS*
Ga0070714_1004342641	3300005435	Agricultural Soil	DVLGSLTDFNISIPKLPAGVKIQSISITQQGLRITASGQNTTLSQ*
Ga0070714_1007832031	3300005435	Agricultural Soil	LANFSFSIPKLPAGVSIQSVSVTQQGVMVIISGTHTTLSQNS*
Ga0070730_103270361	3300005537	Surface Soil	LSNFNVTIPKLPAGVSIQSVSVTQEGLMITVTGQNTTLSQ*
Ga0068853_1002842633	3300005539	Corn Rhizosphere	LGSLTDFTFSIPKLPAGVKIQSISVTQQGLRVTATGQNTTLSQ*
Ga0070733_108373562	3300005541	Surface Soil	FNVTIPKLPAGVSIQSVSVTQQGLMITVTGQNTTLSQ*
Ga0068857_1019148702	3300005577	Corn Rhizosphere	TDLLGNLVNFTVTIPKLPAGVKIQKISITPQGLRVSAAGHNTTLSQ*
Ga0070762_109976811	3300005602	Soil	SIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS*
Ga0070702_1000351865	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VLGSLTDFTFSIPKLPAGVKIQSISVTQQGLRITATGQNTTLSQ*
Ga0070717_121598241	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GSLTDFNISIPKLPAGVKIQSISITQQGLRITATGTNTSLSQ*
Ga0075017_1009595301	3300006059	Watersheds	IPKLPAGVTIQNVSVTQQGVQMTLAGHNTVLSQNS*
Ga0070765_1003297571	3300006176	Soil	LGNLANFSFSIPKLPAGVTIQSISVTQQGLRITAGGQNTTLNK*
Ga0070765_1006630991	3300006176	Soil	LSLLGSLANFSFSIPKLPAGVSIQSVSVTQQGVLITAIGHNTTLSQ*
Ga0097621_1005597531	3300006237	Miscanthus Rhizosphere	GSLTDFTFSIPKLPAGVKIQSISVTQQGLRVTATGQNTTLSQ*
Ga0079220_104492731	3300006806	Agricultural Soil	LLGNLVNFTVTIPKLPAGVKIQKISITPQGLRISAAGHNATFSQ*
Ga0075426_113246571	3300006903	Populus Rhizosphere	FSIPKLPAGVKIQSISVTQQGLRITATGQNTTLSQ*
Ga0099827_104825012	3300009090	Vadose Zone Soil	LADFTVTIPKLPAGVAIQSISVTQQGLQITAGGQNTTLSQ*
Ga0105248_127266922	3300009177	Switchgrass Rhizosphere	DVLGSLTDFTFSIPKLPAGVKIQSVNVTQQGVRITATGENTTLSQ*
Ga0116215_13944611	3300009672	Peatlands Soil	PADQLGNFGDFTISIPKLPSGVTIQSVSVTQQGVQVTITGHDTTLSQNS*
Ga0116216_106028581	3300009698	Peatlands Soil	FSFSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ*
Ga0116217_108738321	3300009700	Peatlands Soil	PADALGNLANFSFSIPKLPAGVTIQSISVTQQGLRITAAGTNTTLSQ*
Ga0134082_102210441	3300010303	Grasslands Soil	DFNITIPKLPAGVTIKSISITQQGLRITATGTNTTLSQ*
Ga0126379_132218671	3300010366	Tropical Forest Soil	NAADFTVTIPKLPAGVTIKSISVTQQGLRVTAVGHNTTLSK*
Ga0134125_114617272	3300010371	Terrestrial Soil	GSLTDFTFSIPKLPAGVKIQSVNVTQQGVRITATGENTTLSQ*
Ga0136449_1016474623	3300010379	Peatlands Soil	NLADFTITIPKLPAGVTIQNVSVTQEGVQITLAGHDTVLSQNS*
Ga0136449_1043983892	3300010379	Peatlands Soil	SIPKLPAGVSIQSVSVTQQGVMVTISGTHTTLSQNS*
Ga0134121_110003241	3300010401	Terrestrial Soil	DVLGSLTDFTFSIPKLPAGVKIQSISVTQQGLRITATGQNTTLSQ*
Ga0126345_12035471	3300010858	Boreal Forest Soil	INIPKLPPGVSIQSVSVTQQGVMVAISGTHTTLSQNS*
Ga0126347_13452872	3300010867	Boreal Forest Soil	PKLPPGVSIQSVSVTQQGVMVAIAGTHTTLSQNS*
Ga0126361_102602571	3300010876	Boreal Forest Soil	QLGNFNDFTINIPKLPPGVSIQSVSVTQQGVMVAIAGTHTTLSQNS*
Ga0137391_105898121	3300011270	Vadose Zone Soil	FNVNIPKLPAGVSIKSISITQQGVRISVAGTNTTLSQ*
Ga0137381_112103171	3300012207	Vadose Zone Soil	DVLGSLTDFTFSIPKLPAGVKVQSVSVTQQGLRITATGQNTTLSQ*
Ga0137386_101921604	3300012351	Vadose Zone Soil	DFNINIPKLPAGVAIQSISVTQQGLRITVTGHNTTLSQ*
Ga0157338_10021211	3300012515	Arabidopsis Rhizosphere	LGSLTDFTFSIPKLPAGVKIQSITVTQQGLRVTATGQNTTLSQ*
Ga0134110_104503132	3300012975	Grasslands Soil	DFTFSIPKLPAGVKIQSVSVTQQGVRITATGENTTLSQ*
Ga0157370_119560361	3300013104	Corn Rhizosphere	FTFSIPKLPAGVKIQSISVTQQGLRVTATGQNTTLSK*
Ga0157372_130576252	3300013307	Corn Rhizosphere	TDFTFSIPKLPAGVKIQSISVTQQGLRVTATGQNTTLSQ*
Ga0181537_100779661	3300014201	Bog	VLGSLANFSVSIPELPAGVSIQSVSVTQQGVLITANGHNTTLSQ*
Ga0182033_106821833	3300016319	Soil	NLVNFNISIPKLPAGVTIKNISITQQGLKITAAGTNTTLSQ
Ga0187812_11043053	3300017821	Freshwater Sediment	IPKLPSGVTIQSVSVTQQGVQVTITGHDTTLSQNS
Ga0187803_104832622	3300017934	Freshwater Sediment	SGMPTDALGNFSDFTITIPKLPPGVSIQSVSVTQQGVMVTITGQNTTLSQNS
Ga0187808_100447643	3300017942	Freshwater Sediment	GDFTITIPKLPAGVTIQSVSVTQQGVMVGIAGVNTTLSQNS
Ga0187847_101132353	3300017948	Peatland	TSLLGPLANFSFSIPKLPAGVSIQSVSVTQQGVLITAEGHNTTLSQ
Ga0187781_107995782	3300017972	Tropical Peatland	LGNLANFSITIPKLPAGVTIQSVSVTQQGLQITATGQNTTLSQ
Ga0187777_109112821	3300017974	Tropical Peatland	TSDILGNLNFNVNIPKLPAGVSIKSISVTQQGLRISVAGQNTSLSQ
Ga0187777_114772601	3300017974	Tropical Peatland	IPKLPAGVTIQSISVTQQGIMVTIAGTNTTLSQNS
Ga0187782_115235651	3300017975	Tropical Peatland	IPKLPPGVAIQSVSVTQQGVMVTVTGHDTTLSQNS
Ga0187863_109029102	3300018034	Peatland	SIPKLPPGVSIRNVSVTQQGVMITISGQNTTLSQNS
Ga0187887_102272541	3300018043	Peatland	TNFTITIPKLPAGVSIQSVSVTQQGLRIVATGHNTTLSQ
Ga0187772_111913771	3300018085	Tropical Peatland	FTITIPKLPPGVSIQSVTITQQGVMVTITGQNTTLSQNS
Ga0187770_112364061	3300018090	Tropical Peatland	ILGNLNFNVNIPKLPPGVSIKSISVTQQGVRISVAGQNTTLSQ
Ga0187770_117434552	3300018090	Tropical Peatland	TISIPKLPPGVTIQSVSVTQQGVMVTITGHDTTLSQNS
Ga0210395_106535193	3300020582	Soil	LGNLVDFDVSIPKLPAGVTIKNISVTQQGLRINAAGTNTTLSQ
Ga0210401_104809593	3300020583	Soil	PTNLLGNLANFNFSIPKLPAGVSIQSVSVTQQGVMVTVSGTNTTLSQNS
Ga0210405_105794931	3300021171	Soil	GNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0210405_106127363	3300021171	Soil	TDFNISIPKLPAGVKIQSISITQQGLRITATGTNTSLSQ
Ga0210396_102632073	3300021180	Soil	LGNLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Ga0210396_114260171	3300021180	Soil	DIPLSLLGSLANFSFSIPKLPAGVSIQSVSVTQQGVLITAVGHNTTLSQ
Ga0210385_113406502	3300021402	Soil	NFTITIPKLPAGVAIQSISITQQGLMITATGSHVTVSQNS
Ga0210387_102121531	3300021405	Soil	LGNLANFNFSIPKLPAGVSIQSVSVTQQGVMVTIAGTNTTLSQNQNS
Ga0210387_112807812	3300021405	Soil	ADVLGNLVDFNISIPKLPAGVKIQSISITQQGLRITATGTNTSLSQ
Ga0210383_108567541	3300021407	Soil	TIPKLPAGVTIQSVSVTQQGVQIALAGHDTVLSENS
Ga0210394_107837881	3300021420	Soil	NISIPKLPPGVSIQSVSVTQQGVMVSISGQNTTLSQNS
Ga0210384_113262101	3300021432	Soil	DVLGNLVNFTFSIPKLPAGVKIQSINITQQGLRITATGTNTSLSQ
Ga0210390_107834813	3300021474	Soil	FSVTIPKLPPGVSIQSVSVTQQGLMITATGQNTTLSQS
Ga0210390_107987922	3300021474	Soil	GGIPSDVLGNLANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0210390_108100592	3300021474	Soil	SVLGNLMNFSVTIPKLPAGVSIQSVSVTQQGLMITVTGQNTTLSQNQ
Ga0210390_112740861	3300021474	Soil	IPTDLLGNLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Ga0210398_114734952	3300021477	Soil	MNFTITIPKLPAGVAIQSISITQQGLMITATGSHVTVSQNS
Ga0210410_117065071	3300021479	Soil	NLANFNFSIPKLPPGVSIQSVSVTQQGVMVTISGTNTTLSQNS
Ga0126371_137207502	3300021560	Tropical Forest Soil	LGGLNFNVNIPKLPAGVSIKSISVTQQGLKITAGGTNTTLSQ
Ga0242662_100404181	3300022533	Soil	ISIPKLPAGVKIQSISITQQGLRITATGTNTSLSQ
Ga0224571_1160101	3300022734	Rhizosphere	FSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ
Ga0228598_11322552	3300024227	Rhizosphere	GHLADFNISIPKLPPGVSIQSVSVTQQGVMVSISGQNTTLNQNS
Ga0209171_101917781	3300025320	Iron-Sulfur Acid Spring	NLSDFSVTIPKLPPGVSIQNVSVTQQGLMITATGQHTTLSQS
Ga0207671_108499131	3300025914	Corn Rhizosphere	DFTFSIPKLPAGVKIQSISVTQQGLRVTATGQNTTLSK
Ga0207693_114231412	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GSLTDFNISIPKLPAGVKIQSISITQQGLRITASGQNTTLSQ
Ga0207664_112342352	3300025929	Agricultural Soil	NISIPKLPAGVKIQSISITQQGLRITATGTNTSLSQ
Ga0207698_118414111	3300026142	Corn Rhizosphere	GSLTDFTFSIPKLPAGVKIQSISVTQQGLRITATGQNTTLSQ
Ga0209732_10471652	3300027117	Forest Soil	GNFNDFTINIPKLPPGVSIQSVSVTQQGVMVSIAGSHTTLSQN
Ga0208098_10095113	3300027172	Forest Soil	SFSIPKLPPGVSIQSISVTQQGVMVTISGTHTTLSQNS
Ga0208565_11286102	3300027662	Peatlands Soil	ADALGNLVNFSFSIPKLPAGVTIQSISVTQQGLRITAAGQNTTLSQ
Ga0209530_10340211	3300027692	Forest Soil	GNLADFSFSIPKLPPGVSIRSVSVTQQGVMISISGQNTTLSQNS
Ga0209693_101461931	3300027855	Soil	LANFSFSIPKLPPGVSIQSISVTQQGVMVTISGTHTTLSQNS
Ga0209167_106233202	3300027867	Surface Soil	GLLDNLSNFNVTIPKLPAGVSIQSVSVTQQGLMITVTGQNTTLSQ
Ga0209283_108541581	3300027875	Vadose Zone Soil	PDVLGSLADFTVTIPKLPAGVAIQSISVTQQGLQITASGQNTTLSQ
Ga0209275_104295051	3300027884	Soil	ANFSFSIPKLPAGVSIKSVSVTQEGVMVTISGSHTTLSQNS
Ga0209380_106029431	3300027889	Soil	GSLVNFSFSIPKLPAGVTIQSVSVTQQGVRITATGQNTTLHQ
Ga0209006_100905274	3300027908	Forest Soil	GIPTSVLGSLANFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0302228_101745031	3300028808	Palsa	LADFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0308309_104344171	3300028906	Soil	DAGDIPLSLLGSLANFSFSIPKLPAGVSIQSVSVTQQGVLITAIGHNTTLSQ
Ga0311357_113076751	3300030524	Palsa	GSLANFNVSIPKLPAGVSISSVSVTQQGVRITATGHNTTLSQ
Ga0311355_108141513	3300030580	Palsa	NFNVSIPKLPAGVSISSISVTQQGVRITATGHNTTLSQ
Ga0311354_101726911	3300030618	Palsa	AGDIPTSLLGSLTNFSFSIPKLPAGVSIQNVSVTQQGVLITASGHNTTLSQ
Ga0302317_102677522	3300030677	Palsa	DFSVSIPKLPAGVSIQSVSVTQQGVLITANGHNTTLSQ
Ga0307482_10984923	3300030730	Hardwood Forest Soil	ANFSFSIPKLPAGVSIQSISVTQQGVMVTISGTHTTLSQNS
Ga0302311_101116444	3300030739	Palsa	LANFSFSIPKLPAGVSIQSVSVTQQGVLITADGHNTTLSQ
Ga0302324_1029224202	3300031236	Palsa	AGGVPTSLLGNLVNFTTTVPKLPAGMSIQSVSVTQQGVVITITGQNTTLSQ
Ga0318516_103860113	3300031543	Soil	TITIPKLPAGVTIQSVSVTQQGLMVSIAGTNTTLSQNS
Ga0318541_104635131	3300031545	Soil	LVNFNISIPKLPAGVTIKNISITQQGLKITAAGTNTTLSQ
Ga0318573_104602072	3300031564	Soil	NISLPKLPAGVTIKNISVTQQGLLITAAGTNTTLSQ
Ga0318493_107028461	3300031723	Soil	DQLGNFGNFTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0318494_102680533	3300031751	Soil	FGNFTITIPKLPAGVTIQSVSVTQQGLMVSIAGTNTTLSQNS
Ga0318494_107038231	3300031751	Soil	NFNVTIPKLPAGVTITSISVTQQGLLLTATGQNTTLSK
Ga0318552_105755041	3300031782	Soil	ALGNLADFTITIPKLPAGVTVQSVSVTQQGLQITATGQNTTLSQ
Ga0318497_104278672	3300031805	Soil	NFNINIPKLPAGVSITSITVTQQGLRIVATGQNTTLSQ
Ga0318567_108458871	3300031821	Soil	NLVNFNISLPKLPAGVTIKNISVTQQGLLITAAGTNTTLSQ
Ga0318511_103166571	3300031845	Soil	LVNFNISLPKLPAGVTIKNISVTQQGLLITAAGTNTTLSQ
Ga0318495_102615561	3300031860	Soil	FTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0318495_103926351	3300031860	Soil	NISIPKLPAGVTIQRISITQQGLRITAAGTNTTLSQ
Ga0306919_113820541	3300031879	Soil	LPSNILGNLVNFNISLPKLPAGVTIKNISVTQQGLLITAAGTNTTLSQ
Ga0318520_106854512	3300031897	Soil	IPTDQLGNFGDFTITIPKLPAGVTIQSVSVTQQGVMVSIAGMNTTLSQNS
Ga0310913_102931043	3300031945	Soil	GNLVNFNISIPKLPAGVTIKNISITQQGLKITAAGTNTTLSQ
Ga0318569_103485972	3300032010	Soil	IPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0306920_1043631642	3300032261	Soil	VNFTVTIPKLPAGVKIQKISITPQGLRITAAGHNATFSQ
Ga0335085_111563761	3300032770	Soil	NFTVNIPKLPAGVSIQSISVTQQGLRITVTGQNTTLSQ
Ga0335080_102943773	3300032828	Soil	LNFNVNIPKLPAGVSIKSISITQQGLRISVAGQNTSLSQ
Ga0335080_106330403	3300032828	Soil	LGSLVNFNISIPKLPAGVTIKNISITQQGLKITAAGTNTTLSQ
Ga0335072_106296901	3300032898	Soil	GSLTDFTFSIPKLPPGVKIQSISVTQQGLRVTATGQNTTLSQ
Ga0335076_114548171	3300032955	Soil	SFSIPKLPAGVTIQSVSVTQQGLRITAAGQNTTLSQ
Ga0310914_104465474	3300033289	Soil	FGDFTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0310914_110310551	3300033289	Soil	FGNFTITIPKLPAGVTIQSVSVTQQGVMVSIAGVNTTLSQNS
Ga0318519_108172782	3300033290	Soil	FTVTIPNLPAGVTIQSVSVTQQGLQIVASGQNITLSQ