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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F067940 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 125 |
| Average Sequence Length | 45 residues |
| Representative Sequence | VKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILSECRVA |
| Number of Associated Samples | 109 |
| Number of Associated Scaffolds | 125 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 1.60 % |
| % of genes near scaffold ends (potentially truncated) | 98.40 % |
| % of genes from short scaffolds (< 2000 bps) | 92.00 % |
| Associated GOLD sequencing projects | 101 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.43 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (68.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.200 % of family members) |
| Environment Ontology (ENVO) | Unclassified (23.200 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (52.000 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 34.29% β-sheet: 0.00% Coil/Unstructured: 65.71% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 125 Family Scaffolds |
|---|---|---|
| PF00186 | DHFR_1 | 48.80 |
| PF08668 | HDOD | 4.80 |
| PF01494 | FAD_binding_3 | 2.40 |
| PF00950 | ABC-3 | 1.60 |
| PF00582 | Usp | 0.80 |
| PF13280 | WYL | 0.80 |
| PF03466 | LysR_substrate | 0.80 |
| PF13328 | HD_4 | 0.80 |
| PF06052 | 3-HAO | 0.80 |
| COG ID | Name | Functional Category | % Frequency in 125 Family Scaffolds |
|---|---|---|---|
| COG0262 | Dihydrofolate reductase | Coenzyme transport and metabolism [H] | 48.80 |
| COG0654 | 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases | Energy production and conversion [C] | 4.80 |
| COG0578 | Glycerol-3-phosphate dehydrogenase | Energy production and conversion [C] | 2.40 |
| COG0644 | Dehydrogenase (flavoprotein) | Energy production and conversion [C] | 2.40 |
| COG0665 | Glycine/D-amino acid oxidase (deaminating) | Amino acid transport and metabolism [E] | 2.40 |
| COG0609 | ABC-type Fe3+-siderophore transport system, permease component | Inorganic ion transport and metabolism [P] | 1.60 |
| COG1108 | ABC-type Mn2+/Zn2+ transport system, permease component | Inorganic ion transport and metabolism [P] | 1.60 |
| COG4606 | ABC-type enterochelin transport system, permease component | Inorganic ion transport and metabolism [P] | 1.60 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 68.00 % |
| All Organisms | root | All Organisms | 32.00 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 15.20% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 14.40% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 9.60% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 8.00% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 6.40% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 4.80% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.80% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 4.80% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 2.40% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 2.40% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 2.40% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 2.40% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.40% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 2.40% |
| Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 2.40% |
| Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 2.40% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.60% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 1.60% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 0.80% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.80% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.80% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.80% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.80% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.80% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.80% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.80% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 0.80% |
| Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.80% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.80% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.80% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000567 | Peat soil microbial communities from Weissenstadt, Germany - SII-2010 | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300003995 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2 | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004082 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005944 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 | Environmental | Open in IMG/M |
| 3300005995 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 | Environmental | Open in IMG/M |
| 3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
| 3300006354 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 | Environmental | Open in IMG/M |
| 3300009029 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189 | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009500 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300009627 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10 | Environmental | Open in IMG/M |
| 3300009632 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 | Environmental | Open in IMG/M |
| 3300009709 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300009762 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40 | Environmental | Open in IMG/M |
| 3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
| 3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014168 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG | Environmental | Open in IMG/M |
| 3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
| 3300014638 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG | Environmental | Open in IMG/M |
| 3300014655 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG | Environmental | Open in IMG/M |
| 3300015052 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300017970 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
| 3300018037 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10 | Environmental | Open in IMG/M |
| 3300018038 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10 | Environmental | Open in IMG/M |
| 3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
| 3300020021 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300023030 | Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2 | Environmental | Open in IMG/M |
| 3300023101 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14 | Environmental | Open in IMG/M |
| 3300025509 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026215 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048 (SPAdes) | Environmental | Open in IMG/M |
| 3300026490 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A | Environmental | Open in IMG/M |
| 3300027313 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 45 (SPAdes) | Environmental | Open in IMG/M |
| 3300027574 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027590 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027648 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027767 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027795 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027903 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027908 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300028037 | Soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 | Environmental | Open in IMG/M |
| 3300028765 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2 | Environmental | Open in IMG/M |
| 3300028813 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3 | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300029910 | III_Palsa_E2 coassembly | Environmental | Open in IMG/M |
| 3300029913 | III_Bog_N3 coassembly | Environmental | Open in IMG/M |
| 3300029917 | I_Bog_E1 coassembly | Environmental | Open in IMG/M |
| 3300029923 | II_Fen_E1 coassembly | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300029945 | I_Bog_N2 coassembly | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030225 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3 | Environmental | Open in IMG/M |
| 3300030294 | II_Fen_E3 coassembly | Environmental | Open in IMG/M |
| 3300030503 | III_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030518 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2 | Environmental | Open in IMG/M |
| 3300030520 | III_Palsa_N2 coassembly | Environmental | Open in IMG/M |
| 3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030677 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3 | Environmental | Open in IMG/M |
| 3300030760 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030763 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031027 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3 | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
| 3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031524 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3 | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033402 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN | Environmental | Open in IMG/M |
| 3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
| 3300033982 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction | Environmental | Open in IMG/M |
| 3300034124 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI12270J11330_101355563 | 3300000567 | Peatlands Soil | VKLFDAELTTNESYVLLHRPEDSAREDLQELTQWILESCRVA* |
| JGI12635J15846_107857672 | 3300001593 | Forest Soil | VKLFAAELTTNESYVLLHRPADHAREDLQELTQWILSECRVA* |
| JGIcombinedJ26739_1009553482 | 3300002245 | Forest Soil | AELTTNESYVLLHRPEDRKREDLQELTQWILSECRVA* |
| Ga0055438_101512582 | 3300003995 | Natural And Restored Wetlands | FDAELETNESYVLLARPEDAGRDEVGELTRWILAECRVPSAA* |
| Ga0062385_101815841 | 3300004080 | Bog Forest Soil | VKLFADELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA* |
| Ga0062384_1009668421 | 3300004082 | Bog Forest Soil | VALVPARLSADRFAAGGLVKLFTDELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA |
| Ga0062387_1012110482 | 3300004091 | Bog Forest Soil | VKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILSECRVA* |
| Ga0062389_1025272011 | 3300004092 | Bog Forest Soil | DRFAAGGLVKLFTDELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA* |
| Ga0062388_1007387683 | 3300004635 | Bog Forest Soil | KLFDAELTTNENYVLLHRPADRAREDLQELMQWILSECRVA* |
| Ga0070696_1014766992 | 3300005546 | Corn, Switchgrass And Miscanthus Rhizosphere | LFDAELTTNESYYLLHRPEDSKREDLQELTQWILSTCRVS* |
| Ga0070762_103456181 | 3300005602 | Soil | GGLVKLFTAELTTNESYVLLHRPEDRAREDLQELTQWILTECRVA* |
| Ga0066788_100764483 | 3300005944 | Soil | LTTNESYYLLHRPEDRAREDLQELTRWILSECRVA* |
| Ga0066790_101503903 | 3300005995 | Soil | FEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA* |
| Ga0070765_1007962653 | 3300006176 | Soil | TAGGLVKLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA* |
| Ga0075021_109430281 | 3300006354 | Watersheds | VGVALVPSRLSADRFVAGGLIKLFDAELKTNESYVLLHRPEDRAREDLQELTQWILRSCRVA* |
| Ga0066793_106470712 | 3300009029 | Prmafrost Soil | VSGGLVKLFDAELTTNESYVLLHRPEDVAHKELQKFTHWILNEFRVA* |
| Ga0099830_112142432 | 3300009088 | Vadose Zone Soil | AAFITSESDVLLHMLEDRAREALQELTQWILAKCRVA* |
| Ga0116229_101945161 | 3300009500 | Host-Associated | TTNESYVLLHRPEDRKREDLQELTQWILSKCRVA* |
| Ga0116229_111980702 | 3300009500 | Host-Associated | FVAGGLVKLFAAELKTNESYVLLHRPEDQAREDLQELTQWILRSCRVA* |
| Ga0116109_10735842 | 3300009627 | Peatland | LVKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILRSCRVA* |
| Ga0116102_11125251 | 3300009632 | Peatland | AEWTTNESYVLLHRPEDYAREDLQEFTQWILSEFRVA* |
| Ga0116227_109364122 | 3300009709 | Host-Associated | FEAELTTNESYVLLHRPEDREREDLQELTQWILRKCRVA* |
| Ga0116130_10495934 | 3300009762 | Peatland | TTNESYVLLHRPEDYAREDLQEFTQWILSEFRVA* |
| Ga0074046_109109642 | 3300010339 | Bog Forest Soil | EAELTTNESYVLLHRTEDQACEELREFTQWILSEFRVA* |
| Ga0137391_103015293 | 3300011270 | Vadose Zone Soil | AGGLVKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILTKCRVA* |
| Ga0137363_102732673 | 3300012202 | Vadose Zone Soil | KTNESYVLLHRPEDRAREDLQELTQWILRSCRVA* |
| Ga0137363_109065973 | 3300012202 | Vadose Zone Soil | FDAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA* |
| Ga0137360_111803562 | 3300012361 | Vadose Zone Soil | ADRFVAGGLMKLFDAELKTNESYVLLHRPEDRAREDLQELTQWILNSCRVA* |
| Ga0137394_110019782 | 3300012922 | Vadose Zone Soil | VKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILTKCRVA* |
| Ga0137404_110820202 | 3300012929 | Vadose Zone Soil | VKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILAKCRVA* |
| Ga0137410_108365171 | 3300012944 | Vadose Zone Soil | AELRTQESYVLLARPEDAERDEVGELTRWILTECRTPSAA* |
| Ga0181534_105332931 | 3300014168 | Bog | AELTTNESYVLLHRPEDRAREDLQELTQWILSKCRVA* |
| Ga0182016_104455532 | 3300014493 | Bog | LSADRFAKGGLVKLFSEELTTNESYVLLHRPQDGEREDLQELTRWILSECRAG* |
| Ga0181536_102961552 | 3300014638 | Bog | PSRLSADRFAKGGLVKLFSEELTTNESYVLLHRPQDGEREDLQELTRWILSECRAG* |
| Ga0181516_104553982 | 3300014655 | Bog | ALVPSRLSADRFAGGGLVRLFDAELTTNESYVLLHRPEDKAREDLQELTQWILKSCRVA* |
| Ga0137411_12325902 | 3300015052 | Vadose Zone Soil | MKLFDAELKTNESYVLLHRPEDRAREDLQELTQWILRSCRVA* |
| Ga0137418_101016931 | 3300015241 | Vadose Zone Soil | GVALVPTQLSADRFQAGGLMKLFDAELKTNESYVLLHRPEDRAREDLQEVTQWILRSCRVA* |
| Ga0137403_102207511 | 3300015264 | Vadose Zone Soil | LTTNESYVLLHRPEDRAREDLQELTQWILTKCRVA* |
| Ga0187783_109417752 | 3300017970 | Tropical Peatland | FDVELATNESYVLLHRPEDGDREDLQEFTRWILNECQIA |
| Ga0187883_100838304 | 3300018037 | Peatland | PSRLCADRFAAGGLVKVFDAEWATNEGYVLLHRPEDQAREELQEFTEWILSEFRVA |
| Ga0187855_100905764 | 3300018038 | Peatland | LVKLFSEELATNESYVLLHRPQDGEREDLQELTRWILSECRAG |
| Ga0187859_103709533 | 3300018047 | Peatland | FAAGGLVKLFTDELTTNESYVLLHRPEDGAREDLQELTRWILKECRVA |
| Ga0193726_10250571 | 3300020021 | Soil | LVKLFDAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0210403_107198302 | 3300020580 | Soil | LFDAELKTNESYVLLHRPEDRAREDLQELTRWILSSCRVA |
| Ga0210403_113837242 | 3300020580 | Soil | LTTNESYVLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0210403_114756481 | 3300020580 | Soil | WTTHESYVLLHRPEAHAREDLQEFTQWILSEFRVA |
| Ga0210406_113807042 | 3300021168 | Soil | TNESYVLLHRPQDGKREELQELTRWILSECQAAARAST |
| Ga0210400_103406451 | 3300021170 | Soil | LTTNESYVLLHRPEDGGREDLQELTRWILSECRVA |
| Ga0210405_107885673 | 3300021171 | Soil | AELETNESYVLLHRPEDQARDDLQELTRWILSECREA |
| Ga0210396_107749692 | 3300021180 | Soil | LVKLFDAELATNENYVLLQRPEDGEREDLQELTQWILSKCRVA |
| Ga0210396_111368302 | 3300021180 | Soil | FEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0210387_107036023 | 3300021405 | Soil | ELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0210386_103214701 | 3300021406 | Soil | ARLSADRFVAGGLVKLFTDELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA |
| Ga0210386_114621792 | 3300021406 | Soil | KLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0210394_102227791 | 3300021420 | Soil | AAGGLVKLFTDELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA |
| Ga0210384_102553711 | 3300021432 | Soil | FDAELTTNESYVLLHRPEDRAREDLQELTQWILSECRVA |
| Ga0210391_105754801 | 3300021433 | Soil | VKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILSECRVA |
| Ga0210390_115333682 | 3300021474 | Soil | PARLSADRFAAGGLVKLFTDELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA |
| Ga0210392_104126373 | 3300021475 | Soil | LVPSRLSADRFTAGGLVKLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0210392_111128792 | 3300021475 | Soil | LVKLFAAELTTNESYVLLHRPEDRKREDLQELTQWILSECRVA |
| Ga0210409_103284924 | 3300021559 | Soil | AELTTNESYVLLHRPEDRAREDLQELTQWILSECRVA |
| Ga0224561_10257491 | 3300023030 | Soil | LFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0224557_12663112 | 3300023101 | Soil | LTTNESYVLLHRPEDKAREDLQELTQWILKSCRVA |
| Ga0208848_11180461 | 3300025509 | Arctic Peat Soil | GVALVPSRLSADRFVAGGLVKLFAAELATNESYVLLHRPEDREREDLQELTQWILSECRV |
| Ga0207663_102240691 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | LSTNESYYLLHRPEDREREDLQELTQWILSECRVA |
| Ga0209849_10796822 | 3300026215 | Soil | AELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0257153_10409773 | 3300026490 | Soil | GLVKLFDAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0207780_10935021 | 3300027313 | Tropical Forest Soil | RLSADRFEAGGLLRLFDAELTTNESYVLLHRPEDRKREDLQELTQWILSECRVA |
| Ga0208982_10499202 | 3300027574 | Forest Soil | KLFDAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0209116_11084031 | 3300027590 | Forest Soil | RLSADRFAAGGLVKLFSQELLTNESYVLLHRPQDGDREDLQELTRWILSECRAG |
| Ga0209420_10428514 | 3300027648 | Forest Soil | RFAAGGLVKLFTAELTTNESYVLLHRPADRAREDLQELTRWILSECRVA |
| Ga0209655_102445721 | 3300027767 | Bog Forest Soil | LSADRFVAGGLVKLFTDELTTNESYVLLHRPEDGKREDLQELTRWILSECRVA |
| Ga0209139_103673541 | 3300027795 | Bog Forest Soil | LTTNESYFLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0209656_102079351 | 3300027812 | Bog Forest Soil | AGGLVKLFTAELTTNESYVLLHRPEDRAREDLQELTRWILKECRVA |
| Ga0209275_100926281 | 3300027884 | Soil | IGGGLVKLFDAELTTNESYVLLHRPEDHAREDLQELTEWILSECRVA |
| Ga0209275_101190403 | 3300027884 | Soil | VKLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0209275_105670341 | 3300027884 | Soil | FVAGGLVKLFTAELTTNESYVLLHRPEDRAREDLQELTQWILTECRVA |
| Ga0209488_111842862 | 3300027903 | Vadose Zone Soil | GLVKLFDAELTTNESYVLLHRPEDRAREDLQELTQWILTKCRVA |
| Ga0209006_105669341 | 3300027908 | Forest Soil | KLFAQELTTNESYVLLHRPQDGKREELQELARWILSECQVAGRAPT |
| Ga0265349_10295111 | 3300028037 | Soil | RFSAGGLVKLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0302198_100679275 | 3300028765 | Bog | VGVALVPARLSADRFAAGGLVRLFDDAELATNESYVLLQRPEDKDREDLKELTDWILKECQVA |
| Ga0302198_104288801 | 3300028765 | Bog | GLVKLFDAELATNESYVLLHRPEDRAREDLQELTRWILSKCRVA |
| Ga0302157_105787832 | 3300028813 | Bog | LFDAELRTNESYVLLHRPEDHSREDLQELTRWILSECKVA |
| Ga0308309_106077543 | 3300028906 | Soil | TAGGLVKLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0311369_109290332 | 3300029910 | Palsa | RLSADRFAAGGLVKLFTDELRTNESYVLLHRPEDGEREDLQELTRWILKECRVA |
| Ga0311362_109641541 | 3300029913 | Bog | KLFEAELTTNESYVLLHRPEDSARDDLQELTRWILKSCRMP |
| Ga0311326_102195713 | 3300029917 | Bog | AGGLVRLFDDAELATNESYVLLQRPEDKDREDLKELTDWILKECQVA |
| Ga0311347_106977681 | 3300029923 | Fen | SAERFLSGALIKLFEAELVTNEQYVLLHRPEDAARADLCELAQWILDKCRVA |
| Ga0311340_116151021 | 3300029943 | Palsa | GVALVPSRLSADRFAAGGLVKLFTDELTTNENYVLLHRPEDGGREDLQELTRWILSECRV |
| Ga0311330_104291813 | 3300029945 | Bog | LVKLFDAELATNESYVLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0311371_102476364 | 3300029951 | Palsa | VPSRLSADRFVAGGLVKLFEAELTTNESYVLLHRPEDRAREDLQELTQWILKSCRVA |
| Ga0311371_116413772 | 3300029951 | Palsa | RLSADRFAAGGLVKLFTDELTTNESYVLLHRPEDGKREDLQELTRWILKECRVA |
| Ga0302177_101489051 | 3300030053 | Palsa | PSRLSADRFTSGGLVKLFTAELTTNESYVLLHRPADHAREDLQELTRWILSECRVA |
| Ga0302196_103085972 | 3300030225 | Bog | AGGLVKLFDAELATNESYVLLHRPEDRAREDLQELTRWILSKCRVA |
| Ga0311349_105451831 | 3300030294 | Fen | IPARLSAERFVSGALTKLFEAELVTNENYVLLHRPEDAQRADLCELADWILDKCRVA |
| Ga0311370_118588552 | 3300030503 | Palsa | FNAGGLVRLFAAELTTNESYVLLHRPEDRSREDLQELTQWILNECRVA |
| Ga0302275_104512911 | 3300030518 | Bog | KGGLVKLFSEELTTNESYVLLHRPQDGEREDLQELTRWILSECRAG |
| Ga0302275_104707271 | 3300030518 | Bog | ELATNESYVLLHRPEDRAREDLQELTRWILSKCRVA |
| Ga0311372_101183921 | 3300030520 | Palsa | TDELRTNENYVLLHRPEDGAREDLQELTRWILSECRVA |
| Ga0311357_100602625 | 3300030524 | Palsa | DRFTAGGLVKLFEAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0311357_110305571 | 3300030524 | Palsa | FTDELTTNESYVLLHRPEDGKREDLQELTRWILKECRVA |
| Ga0311355_100764935 | 3300030580 | Palsa | GLVKLFTDELTTNENYVLLHRPEDGGREDLQELTRWILSECRVA |
| Ga0311354_115674861 | 3300030618 | Palsa | DELRTNENYVLLHRPEDGAREDLQELTRWILSECRVA |
| Ga0302317_102936242 | 3300030677 | Palsa | ADRFTSGGLVKLFTAELTTNESYVLLHRPADHAREDLQELTRWILSECRVA |
| Ga0265762_11345332 | 3300030760 | Soil | ADRFATGGLVKLFSEELTTNESYVLLHRPQDGEREDLQELTRWILNECRTG |
| Ga0265763_10013683 | 3300030763 | Soil | VGVALVPSRLSADRFNAGGLIKLFAAELTTNESYYLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0302308_100776644 | 3300031027 | Palsa | SADRFAAGGLVKLFTDELTTNENYVLLHRPEDGGREDLQELTRWILSECRVA |
| Ga0170834_1051539681 | 3300031057 | Forest Soil | AELCTNESYYLLHRPEDRTREDLQELTRWILSKCRVA |
| Ga0170824_1173759272 | 3300031231 | Forest Soil | VKLFDAELTTNESYYLLHRPEDRAREDLQELTRWILKECRVA |
| Ga0302325_114262401 | 3300031234 | Palsa | LTMNESYYLLHRPEDRKREDLQELTQWILSKCRVA |
| Ga0302324_1007470674 | 3300031236 | Palsa | AGGLVKLFEAELTTNESYVLLHRPEDREREDLQELTQWILSKCRVA |
| Ga0302324_1012573353 | 3300031236 | Palsa | QGVGIALVPSRLSADRFAAGGLVKLFTDELTTNESYVLLHRPEDGKREDLQELTRWILKECRVA |
| Ga0170820_140814431 | 3300031446 | Forest Soil | PLVPSRLSADRFTAGGLVKLFSAELCTNESYYLLHRPEDRTREDLQELTRWILSKCRVA |
| Ga0302320_113209292 | 3300031524 | Bog | VKLFDAELATNESYVLLHRPEDRAREDLQELTRWILSECRVA |
| Ga0302326_115030863 | 3300031525 | Palsa | LVKLFEAELATNESYVLLHRPEDRQREDLQELTQWILSECRVA |
| Ga0302326_124806812 | 3300031525 | Palsa | LFTDELTTNESYVLLHRPEDGKREDLQELTRWILKECRVA |
| Ga0310686_1033576466 | 3300031708 | Soil | VGIALVPSRLSADRFATGGLVKLFSEELTTNESYVLLHRPKDGEREDLQELTRWILNECRTG |
| Ga0307476_100944443 | 3300031715 | Hardwood Forest Soil | MKLFDAELKTNESYVLLHRPEDRAREDLQELTQWILSSCRVA |
| Ga0307476_112369161 | 3300031715 | Hardwood Forest Soil | KLFEAELTTNESYVLLHRPEDSAREDLQELTQWILSKCRVA |
| Ga0307478_107797941 | 3300031823 | Hardwood Forest Soil | VKLFRDELTTNESYVLLHRPEDGEREDLQELTRWILSECRVA |
| Ga0335073_110169043 | 3300033134 | Soil | NESYVLLHRPQDGQREELQELTRWILSECRLPSRAFA |
| Ga0326728_107967441 | 3300033402 | Peat Soil | ALVPSRLSADRFAKGGLVKLFSEELTTNESYVLLHRPQDGEREDLQELTRWILSECRAG |
| Ga0326726_118656232 | 3300033433 | Peat Soil | THESYVLLARPQDARRAEVDELTLWILSECRVPGAA |
| Ga0371487_0154960_1013_1138 | 3300033982 | Peat Soil | RLFDAELTTNESYVLLHRPEDCKREDLQELTQWILSECRVA |
| Ga0370483_0231097_4_186 | 3300034124 | Untreated Peat Soil | VALVPSRLSADRFIAGGLVKLFAAELATNESYVLLHRPEDAARDDLQELTQWILKSCSVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |