Metagenome / Metatranscriptome Family F067925

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067925
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	49 residues
Representative Sequence	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAP
Number of Associated Samples	78
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	97.60 %
% of genes from short scaffolds (< 2000 bps)	94.40 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.800 % of family members)
Environment Ontology (ENVO)	Unclassified (78.400 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.400 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.04% β-sheet: 0.00% Coil/Unstructured: 65.96%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF00211	Guanylate_cyc	4.00
PF04909	Amidohydro_2	3.20
PF12680	SnoaL_2	2.40
PF02525	Flavodoxin_2	2.40
PF00903	Glyoxalase	1.60
PF13495	Phage_int_SAM_4	0.80
PF01527	HTH_Tnp_1	0.80
PF13538	UvrD_C_2	0.80
PF07883	Cupin_2	0.80
PF14534	DUF4440	0.80
PF03070	TENA_THI-4	0.80
PF09995	MPAB_Lcp_cat	0.80
PF04828	GFA	0.80
PF08002	DUF1697	0.80
PF13460	NAD_binding_10	0.80
PF13409	GST_N_2	0.80
PF02668	TauD	0.80
PF01471	PG_binding_1	0.80
PF02586	SRAP	0.80
PF04986	Y2_Tnp	0.80
PF01609	DDE_Tnp_1	0.80
PF00043	GST_C	0.80
PF04199	Cyclase	0.80
PF05368	NmrA	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	4.00
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.80
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.80
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.80
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.80
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.80
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.80
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.80
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.80
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	0.80
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.80
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.80
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.60 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.60 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.60 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.60 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.60 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.80 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.80 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.80 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.60 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	5.60 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.00 %
unclassified Chromatiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales	0.80 %
Cellvibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae	0.80 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.80 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.80 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.60 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	5.60 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.00 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Simiduia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Simiduia	0.80 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.80 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.80 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.60 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	5.60 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.60 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.80 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.80 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.80 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Simiduia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Simiduia	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.60 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	5.60 %
Bradyrhizobium sp. C-145	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	1.60 %
Saccharopolyspora phatthalungensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	0.80 %
Methylobacterium sp. BTF04	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. BTF04	0.80 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.80 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.80 %
Simiduia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Simiduia	0.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_103887396	Not Available	561	Open in IMG/M
3300004633\|Ga0066395_10265658	All Organisms → cellular organisms → Bacteria → Proteobacteria	926	Open in IMG/M
3300004633\|Ga0066395_11014217	Not Available	507	Open in IMG/M
3300005332\|Ga0066388_107991652	Not Available	529	Open in IMG/M
3300005436\|Ga0070713_100472953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300005764\|Ga0066903_100339185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Cellvibrionaceae → Simiduia	2418	Open in IMG/M
3300006176\|Ga0070765_102319704	Not Available	500	Open in IMG/M
3300010046\|Ga0126384_12046332	Not Available	548	Open in IMG/M
3300010048\|Ga0126373_11667869	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300010048\|Ga0126373_12826799	Not Available	542	Open in IMG/M
3300010359\|Ga0126376_10777484	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300010360\|Ga0126372_10597192	Not Available	1058	Open in IMG/M
3300010360\|Ga0126372_11178089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	789	Open in IMG/M
3300010376\|Ga0126381_105010475	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012971\|Ga0126369_10090808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2738	Open in IMG/M
3300016270\|Ga0182036_10213358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1423	Open in IMG/M
3300016270\|Ga0182036_10246439	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M
3300016270\|Ga0182036_10863341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	740	Open in IMG/M
3300016270\|Ga0182036_11360879	Not Available	593	Open in IMG/M
3300016294\|Ga0182041_10962789	Not Available	770	Open in IMG/M
3300016294\|Ga0182041_11816476	Not Available	565	Open in IMG/M
3300016341\|Ga0182035_10111419	All Organisms → cellular organisms → Bacteria	2027	Open in IMG/M
3300016357\|Ga0182032_10314623	All Organisms → cellular organisms → Bacteria → Proteobacteria	1241	Open in IMG/M
3300016357\|Ga0182032_10363832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300016357\|Ga0182032_11775796	Not Available	539	Open in IMG/M
3300016371\|Ga0182034_11615019	Not Available	569	Open in IMG/M
3300016404\|Ga0182037_10804994	Not Available	810	Open in IMG/M
3300016404\|Ga0182037_10825851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	800	Open in IMG/M
3300016445\|Ga0182038_11127538	Not Available	698	Open in IMG/M
3300020581\|Ga0210399_11540063	Not Available	514	Open in IMG/M
3300020582\|Ga0210395_10751539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. BTF04	728	Open in IMG/M
3300020583\|Ga0210401_11443203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora phatthalungensis	545	Open in IMG/M
3300021405\|Ga0210387_10910351	Not Available	773	Open in IMG/M
3300022508\|Ga0222728_1065378	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300026356\|Ga0257150_1002486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2505	Open in IMG/M
3300026489\|Ga0257160_1097475	Not Available	529	Open in IMG/M
3300026551\|Ga0209648_10737411	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300027898\|Ga0209067_10934195	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300027910\|Ga0209583_10784484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	505	Open in IMG/M
3300031543\|Ga0318516_10565152	Not Available	650	Open in IMG/M
3300031545\|Ga0318541_10289294	All Organisms → cellular organisms → Bacteria → Proteobacteria	912	Open in IMG/M
3300031545\|Ga0318541_10350689	Not Available	824	Open in IMG/M
3300031545\|Ga0318541_10669359	Not Available	580	Open in IMG/M
3300031546\|Ga0318538_10078978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1668	Open in IMG/M
3300031546\|Ga0318538_10432803	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300031561\|Ga0318528_10068707	All Organisms → cellular organisms → Bacteria → Proteobacteria	1821	Open in IMG/M
3300031561\|Ga0318528_10324641	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031561\|Ga0318528_10450325	Not Available	691	Open in IMG/M
3300031572\|Ga0318515_10637298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300031573\|Ga0310915_10394754	Not Available	982	Open in IMG/M
3300031668\|Ga0318542_10154490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1142	Open in IMG/M
3300031681\|Ga0318572_10954022	Not Available	509	Open in IMG/M
3300031708\|Ga0310686_110701605	Not Available	545	Open in IMG/M
3300031708\|Ga0310686_117605005	Not Available	1478	Open in IMG/M
3300031719\|Ga0306917_10101234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2067	Open in IMG/M
3300031719\|Ga0306917_10125713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1874	Open in IMG/M
3300031719\|Ga0306917_10388449	Not Available	1088	Open in IMG/M
3300031719\|Ga0306917_10866217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300031744\|Ga0306918_10155777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1691	Open in IMG/M
3300031744\|Ga0306918_10199207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1508	Open in IMG/M
3300031747\|Ga0318502_10277879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	982	Open in IMG/M
3300031751\|Ga0318494_10618971	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300031763\|Ga0318537_10258840	Not Available	645	Open in IMG/M
3300031765\|Ga0318554_10097789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1648	Open in IMG/M
3300031770\|Ga0318521_10230298	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300031771\|Ga0318546_10987880	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300031771\|Ga0318546_11124186	Not Available	552	Open in IMG/M
3300031793\|Ga0318548_10349609	Not Available	726	Open in IMG/M
3300031793\|Ga0318548_10451726	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300031821\|Ga0318567_10559657	Not Available	649	Open in IMG/M
3300031821\|Ga0318567_10718937	Not Available	566	Open in IMG/M
3300031832\|Ga0318499_10382356	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031835\|Ga0318517_10536003	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031846\|Ga0318512_10338611	Not Available	751	Open in IMG/M
3300031879\|Ga0306919_10142848	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300031879\|Ga0306919_10642170	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300031879\|Ga0306919_10870595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	691	Open in IMG/M
3300031879\|Ga0306919_11385319	Not Available	531	Open in IMG/M
3300031880\|Ga0318544_10347635	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031890\|Ga0306925_12264788	Not Available	503	Open in IMG/M
3300031893\|Ga0318536_10559573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	573	Open in IMG/M
3300031896\|Ga0318551_10201819	Not Available	1100	Open in IMG/M
3300031897\|Ga0318520_10205261	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300031897\|Ga0318520_10521335	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300031897\|Ga0318520_10877200	Not Available	564	Open in IMG/M
3300031910\|Ga0306923_10264298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1968	Open in IMG/M
3300031910\|Ga0306923_10932818	Not Available	948	Open in IMG/M
3300031910\|Ga0306923_11967300	Not Available	594	Open in IMG/M
3300031912\|Ga0306921_10329622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1786	Open in IMG/M
3300031912\|Ga0306921_10338987	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300031912\|Ga0306921_10405819	All Organisms → cellular organisms → Bacteria → Acidobacteria	1590	Open in IMG/M
3300031912\|Ga0306921_12514387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031941\|Ga0310912_10137979	All Organisms → cellular organisms → Bacteria → Proteobacteria	1830	Open in IMG/M
3300031941\|Ga0310912_10790104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	733	Open in IMG/M
3300031941\|Ga0310912_11051208	Not Available	623	Open in IMG/M
3300031941\|Ga0310912_11527349	Not Available	502	Open in IMG/M
3300031942\|Ga0310916_10387354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1189	Open in IMG/M
3300031942\|Ga0310916_11058224	Not Available	675	Open in IMG/M
3300031942\|Ga0310916_11574476	Not Available	534	Open in IMG/M
3300031945\|Ga0310913_10124304	All Organisms → cellular organisms → Bacteria → Proteobacteria	1764	Open in IMG/M
3300031945\|Ga0310913_10367574	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300031946\|Ga0310910_10433345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. C-145	1042	Open in IMG/M
3300031946\|Ga0310910_11272064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300031947\|Ga0310909_10099736	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300031947\|Ga0310909_10667426	Not Available	865	Open in IMG/M
3300031947\|Ga0310909_11619198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300031954\|Ga0306926_10486364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1518	Open in IMG/M
3300031954\|Ga0306926_11128302	Not Available	925	Open in IMG/M
3300031959\|Ga0318530_10288793	Not Available	677	Open in IMG/M
3300031981\|Ga0318531_10081699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1408	Open in IMG/M
3300031981\|Ga0318531_10269922	Not Available	768	Open in IMG/M
3300032001\|Ga0306922_10203441	All Organisms → cellular organisms → Bacteria → Proteobacteria	2125	Open in IMG/M
3300032010\|Ga0318569_10338318	Not Available	701	Open in IMG/M
3300032041\|Ga0318549_10101060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	1257	Open in IMG/M
3300032055\|Ga0318575_10319045	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300032055\|Ga0318575_10323197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	781	Open in IMG/M
3300032059\|Ga0318533_10792392	Not Available	695	Open in IMG/M
3300032060\|Ga0318505_10445214	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300032076\|Ga0306924_10987100	Not Available	925	Open in IMG/M
3300032076\|Ga0306924_11505044	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300032091\|Ga0318577_10321860	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300032094\|Ga0318540_10268589	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300032261\|Ga0306920_100495782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1813	Open in IMG/M
3300032261\|Ga0306920_104364168	Not Available	507	Open in IMG/M
3300033289\|Ga0310914_10787890	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.60%
Aquatic	Environmental → Aquatic	2.40%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.60%
Sediment	Environmental → Aquatic → Sediment	1.60%
Freshwater	Environmental → Aquatic → Freshwater	0.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.80%
Loam	Environmental → Terrestrial → Soil → Loam	4.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	84.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.20%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.20%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.60%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1038873962	3300004092	Bog Forest Soil	MRHANVRNADEVEVREMIKGRHDMRLRRLGKPAGSIALGATLTEVAPGG
Ga0066395_102656581	3300004633	Tropical Forest Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPR
Ga0066395_110142171	3300004633	Tropical Forest Soil	MRHANVRNADEVEAREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGI
Ga0066388_1079916522	3300005332	Tropical Forest Soil	MRHTNVRNADEVDVREMIKGRHNMRLRQLGKPAGSIELGATLTEVAPGGISFPRHAHYVN
Ga0070713_1004729532	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPSGTIAASPS*
Ga0066903_1003391851	3300005764	Tropical Forest Soil	MRHANVRNADEVEAREMIKGRHNMRLRQLGKPAGSIALG
Ga0070765_1023197042	3300006176	Soil	MRHQNVRNADEVEAREMIKGRHNMRLRQLGKPAGSRALGATLTEVAPGAVSFPRHAHHA
Ga0126384_120463321	3300010046	Tropical Forest Soil	MRHANVRNADEVEAREMIKGRHNMRLRQLGKPAGSIALNATLTEVPPGGISSPRHAHYVNEEA
Ga0126373_116678691	3300010048	Tropical Forest Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVNEEA
Ga0126373_128267991	3300010048	Tropical Forest Soil	MRHANVRNADEVDVREMIKGRHNMRLRQLGKPAGSIELGATLTEVAPG
Ga0126376_107774841	3300010359	Tropical Forest Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLRKPAGSIALGATLTEVAPGGI
Ga0126372_105971921	3300010360	Tropical Forest Soil	MRHANVRNADEVEAREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGG
Ga0126372_111780891	3300010360	Tropical Forest Soil	MRHPNVRNVDEVDVREMSKGRHNMRLRQLGKPAGSSALGATLTEVAPGGISF
Ga0126381_1050104752	3300010376	Tropical Forest Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPPPRPLRQ
Ga0126369_100908085	3300012971	Tropical Forest Soil	MRHANVRNADEVEAREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVN
Ga0182036_102133583	3300016270	Soil	MRHENVRNVDEVEVREMIKGRHNMRLRQLGKPAGSIALGA
Ga0182036_102464394	3300016270	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGSIALGATLTEVAPGGISFP
Ga0182036_108633412	3300016270	Soil	MRHPNVRYADEVEVREMVKGRHNMRLRQLGKPAGSSALGAT
Ga0182036_113608791	3300016270	Soil	MRHSNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEV
Ga0182041_109627891	3300016294	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATL
Ga0182041_118164761	3300016294	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAP
Ga0182035_101114195	3300016341	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVNEE
Ga0182032_103146233	3300016357	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVN
Ga0182032_103638321	3300016357	Soil	MRHANVRNADEVDVREMIKGRHNMRLRQLGKPAGSIELGATLTEVAPGGIS
Ga0182032_117757961	3300016357	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIA
Ga0182034_116150191	3300016371	Soil	MRHANVRNADEVEVREMVKGRHNMHLRQLGKPAGSVALGATLTEMATCGISFPRHAHYVNEE
Ga0182037_108049941	3300016404	Soil	MRHANVRNVDEVDVREMIKGRHNRRLHQLGKPAGSIELGATLTEVAPGGI
Ga0182037_108258511	3300016404	Soil	MRHPNVRYADEVEVREMVKGRHNMRLRQLGKPAGSSALGATLTEVAPGA
Ga0182038_111275382	3300016445	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRHLSKPAGSIALGAILTEVATGGDWSNPESFSAGQKFPGHP
Ga0210399_115400631	3300020581	Soil	MRHQNVRNADEVEAREMIKGRHNMRLRQLGKPAGS
Ga0210395_107515392	3300020582	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSSALGATLTEVAPGGVSFPRHAHNVNEEAI
Ga0210401_114432031	3300020583	Soil	MRHQNVRNADEVEAREMIKGRHNMRLRQLGKPAGSRALGATLTEVAPG
Ga0210387_109103511	3300021405	Soil	MRHQNVRNADEVEARDMIKGRHNMRLRQLGKPAGSRALGATLTEVAPGAVSFPRH
Ga0222728_10653782	3300022508	Soil	MRHQNVRNADEVEAREMIKGRHNMRLRQLGKPAGSRALGATLTEVAPGAVSFPRHAHHAN
Ga0257150_10024863	3300026356	Soil	MRHPNVRNADEVEAREMIKGRHNMRLRQLGKPAGS
Ga0257160_10974751	3300026489	Soil	MRHQNVRNADEVEAREMIKGRHNMRLRQLGKPAGSLALGATLTEVA
Ga0209648_107374111	3300026551	Grasslands Soil	MRHQNVRNADEVEAREMIKGRHNMRLRQLGKPAGSRALGATLTEVAP
Ga0209067_109341951	3300027898	Watersheds	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSRALGATLTEVAPGAVSF
Ga0209583_107844841	3300027910	Watersheds	MRHANVLNADEVEVREMIKGRHNMRLRQLGKPAGSRALGATLTEVVPGAVSFPRHAHHAN
Ga0318516_105651521	3300031543	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHN
Ga0318541_102892941	3300031545	Soil	MRHANVRNADEVDVREMIKGRHNMRLRQLGRPAGSIELGATLTEVAPSGISFPRHAHY
Ga0318541_103506891	3300031545	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEV
Ga0318541_106693591	3300031545	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSSALGAT
Ga0318538_100789781	3300031546	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGS
Ga0318538_104328031	3300031546	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALG
Ga0318528_100687074	3300031561	Soil	MRHENVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLT
Ga0318528_103246411	3300031561	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLIEVAPGGISFPRHA
Ga0318528_104503252	3300031561	Soil	MRHPNIRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAAGGISFPRHAH
Ga0318515_106372981	3300031572	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGIS
Ga0310915_103947542	3300031573	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAP
Ga0318542_101544902	3300031668	Soil	MRHPNVRNADEVDAREMIKGRHNMRLRQLGKPAGSSALGATLTRPPPRP
Ga0318572_109540221	3300031681	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVNEE
Ga0310686_1107016051	3300031708	Soil	MRHANVLNADEVEVREMIKGRHNMRLRRLGKPAGSIALGATLTEVAPGGIS
Ga0310686_1176050051	3300031708	Soil	MRHTNVRNADEVEVREMIKGRHNMRLRRLGKPAGSIALGATLTEVAPGGIS
Ga0306917_101012341	3300031719	Soil	MRHENVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALG
Ga0306917_101257132	3300031719	Soil	MRHANVCNADEVEVREMIKGRHNMRLRQLGKPAGSMALGATLTEVAPGGISFPRHAHYVN
Ga0306917_103884491	3300031719	Soil	MRHANVRNADEVDVREMIKGRHNMRLRQLGKPAGSIELGATLTEVAPGGISFPRHAHYVNEE
Ga0306917_108662171	3300031719	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHA
Ga0306918_101557771	3300031744	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHY
Ga0306918_101992073	3300031744	Soil	MRHENVRNADEVEVREMIKGRHNMRLRQLGKPAGSIAL
Ga0318502_102778792	3300031747	Soil	MRHVNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIA
Ga0318494_106189712	3300031751	Soil	MRHANVCNADEVEVREMIKGRHNMRLRQLGKPAGSMALGATLTEVAPGGISFPRHA
Ga0318537_102588401	3300031763	Soil	MRHANVRNADEVDVREMIKGRHNMRLHQLGKPAGSIELGATLTEVAPGG
Ga0318554_100977891	3300031765	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGSVALGAT
Ga0318521_102302984	3300031770	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIALGA
Ga0318546_109878801	3300031771	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLIE
Ga0318546_111241862	3300031771	Soil	MRHPNVRNADEVEVREMIQGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHNVNEE
Ga0318548_103496091	3300031793	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHNVNEEA
Ga0318548_104517262	3300031793	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGS
Ga0318567_105596571	3300031821	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLT
Ga0318567_107189372	3300031821	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLT
Ga0318499_103823561	3300031832	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIA
Ga0318517_105360031	3300031835	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATL
Ga0318512_103386111	3300031846	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFP
Ga0306919_101428481	3300031879	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIA
Ga0306919_106421703	3300031879	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIALGATLTEVA
Ga0306919_108705951	3300031879	Soil	MRHTNVRYADEVEVREMVKGRHNMRLRQLGKPAGSSALGATLTEVAP
Ga0306919_113853191	3300031879	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSSALGATLTEVAPGAISFPRHAH
Ga0318544_103476351	3300031880	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLIEVAP
Ga0306925_122647882	3300031890	Soil	MRHANVRNVDEVDVREMIKGRHNMRLHQLGKPAGSIELGATLT
Ga0318536_105595732	3300031893	Soil	MRHPNVRNADEVDAREMIKGRHNMRLRQLGKPAGSSALGATLTEVAPGGVSFPATPIM
Ga0318551_102018191	3300031896	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGDWSNPES
Ga0318520_102052611	3300031897	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAH
Ga0318520_105213351	3300031897	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTE
Ga0318520_108772001	3300031897	Soil	MRHPNIRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGA
Ga0306923_102642981	3300031910	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVNEVAI
Ga0306923_109328183	3300031910	Soil	MRHSNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLS
Ga0306923_119673002	3300031910	Soil	MRHVNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGA
Ga0306921_103296221	3300031912	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSM
Ga0306921_103389871	3300031912	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGAT
Ga0306921_104058191	3300031912	Soil	MRHVNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTE
Ga0306921_125143871	3300031912	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGEISFPCHAHIGRTHDR
Ga0310912_101379794	3300031941	Soil	MRHENVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPR
Ga0310912_107901042	3300031941	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHNVNEEAI
Ga0310912_110512081	3300031941	Soil	MRHPNIRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAAGGISFPRHAHNVNEE
Ga0310912_115273492	3300031941	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISF
Ga0310916_103873541	3300031942	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPRGISF
Ga0310916_110582242	3300031942	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIAL
Ga0310916_115744761	3300031942	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAH
Ga0310913_101243044	3300031945	Soil	MRHENVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISF
Ga0310913_103675742	3300031945	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGAT
Ga0310910_104333451	3300031946	Soil	MRHRNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALG
Ga0310910_112720642	3300031946	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSMALGATLTEV
Ga0310909_100997362	3300031947	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVNDEAI
Ga0310909_106674261	3300031947	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAHYVN
Ga0310909_116191981	3300031947	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSMALGATLTEVAPGGISFPRHAHYVNEEAI
Ga0306926_104863641	3300031954	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSI
Ga0306926_111283022	3300031954	Soil	MRHANVRNADEVEVREMIKGRHNMRLRQLGKPAGSIELGAT
Ga0318530_102887932	3300031959	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGSVALGATLT
Ga0318531_100816991	3300031981	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGSIALGAT
Ga0318531_102699221	3300031981	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPRHAH
Ga0306922_102034414	3300032001	Soil	MRHRNVRNADEVEVREMIKGRHNMRLRQLGKPAGS
Ga0318569_103383181	3300032010	Soil	MRHANVRNADEVEVREMIKGRHNRRLRQLGKPASSIALGATLTEVAPGGISFYISFTAEY
Ga0318549_101010604	3300032041	Soil	MRHANVRNADEVEVREMIKGRHNMHLRQLGKPAGSIA
Ga0318575_103190452	3300032055	Soil	MRHENVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGAT
Ga0318575_103231971	3300032055	Soil	MRHPNVRNADEVDAREMIKGRHNMRLRQLGKPAGSSALGATLTEVAPGGVSF
Ga0318533_107923922	3300032059	Soil	MRHRNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIA
Ga0318505_104452141	3300032060	Soil	MRHANVRNADEVEVREMIKGRHNMRFRQLDKPAGSIALGATLTE
Ga0306924_109871001	3300032076	Soil	MRHVNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTEV
Ga0306924_115050441	3300032076	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGS
Ga0318577_103218601	3300032091	Soil	MRHANVRNADEVEVREMIKGRHNMRFRQLDKPAGSIALGATLTEVAPGGI
Ga0318540_102685893	3300032094	Soil	MRHANVRNADEVEVRETIKGRHNMRLRQLGKPAGSIALGATLTEVAPGGISFPR
Ga0306920_1004957823	3300032261	Soil	MRHANVRNADEVDVREMIKGRHNMRLRQLGKPAGSIALGATLTEVAPG
Ga0306920_1043641682	3300032261	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSIALGATLTE
Ga0310914_107878902	3300033289	Soil	MRHPNVRNADEVEVREMIKGRHNMRLRQLGKPAGSI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067925

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences