Metagenome Family F067901

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067901
Family Type	Metagenome
Number of Sequences	125
Average Sequence Length	51 residues
Representative Sequence	VSLLTELDAFFTDHHDCGDLDAGVEGPVVWIACLCGASMARRADTDDRA
Number of Associated Samples	64
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.54 %
% of genes near scaffold ends (potentially truncated)	27.20 %
% of genes from short scaffolds (< 2000 bps)	76.80 %
Associated GOLD sequencing projects	57
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (52.000 % of family members)
Environment Ontology (ENVO)	Unclassified (36.800 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.600 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.48% β-sheet: 22.08% Coil/Unstructured: 58.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF04392	ABC_sub_bind	24.00
PF00072	Response_reg	5.60
PF00989	PAS	4.00
PF13426	PAS_9	4.00
PF01925	TauE	2.40
PF04945	YHS	2.40
PF08238	Sel1	1.60
PF01695	IstB_IS21	1.60
PF08241	Methyltransf_11	1.60
PF00565	SNase	0.80
PF01068	DNA_ligase_A_M	0.80
PF02641	DUF190	0.80
PF01699	Na_Ca_ex	0.80
PF07883	Cupin_2	0.80
PF14456	alpha-hel2	0.80
PF02746	MR_MLE_N	0.80
PF02518	HATPase_c	0.80
PF12836	HHH_3	0.80
PF09335	SNARE_assoc	0.80
PF07715	Plug	0.80
PF02371	Transposase_20	0.80
PF00011	HSP20	0.80
PF01738	DLH	0.80
PF03480	DctP	0.80
PF03264	Cytochrom_NNT	0.80
PF00275	EPSP_synthase	0.80
PF14022	DUF4238	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	24.00
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	2.40
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.60
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.60
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.80
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.80
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.80
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.80
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.80
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.80
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.80
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.80
COG1993	PII-like signaling protein	Signal transduction mechanisms [T]	0.80
COG3005	Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductase	Energy production and conversion [C]	0.80
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.80

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.80 %
Unclassified	root	N/A	35.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.80 %
Unclassified	root	N/A	35.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.00 %
Unclassified	root	N/A	35.20 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	11.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.00 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.60 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.80 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	11.20 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.80 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.40 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	2.40 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.60 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	0.80 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.80 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	10.40 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.00 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.40 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.80 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.80 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.80 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	10.40 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.00 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.60 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.80 %
Chloroflexi bacterium RBG_16_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_68_14	0.80 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.80 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.80 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	10.40 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.00 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.60 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	0.80 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.80 %
Chloroflexi bacterium RBG_16_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_68_14	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	10.40 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.00 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	2.40 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.60 %
Methanobacterium	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	0.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.80 %
Chloroflexi bacterium RBG_16_68_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_68_14	0.80 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725000\|GPWRP_F5MPXY302FG8PN	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
2228664022\|INPgaii200_c1210310	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300000443\|F12B_10500929	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	588	Open in IMG/M
3300000559\|F14TC_100639870	Not Available	714	Open in IMG/M
3300000955\|JGI1027J12803_102144884	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300000956\|JGI10216J12902_102609791	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300000956\|JGI10216J12902_105637170	Not Available	2628	Open in IMG/M
3300000956\|JGI10216J12902_107407639	Not Available	1403	Open in IMG/M
3300000956\|JGI10216J12902_115056388	Not Available	708	Open in IMG/M
3300004463\|Ga0063356_100160925	All Organisms → cellular organisms → Bacteria	2579	Open in IMG/M
3300004463\|Ga0063356_105333287	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	552	Open in IMG/M
3300004479\|Ga0062595_100368563	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1011	Open in IMG/M
3300005332\|Ga0066388_100724106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1598	Open in IMG/M
3300005332\|Ga0066388_105702378	Not Available	630	Open in IMG/M
3300005332\|Ga0066388_108276946	Not Available	519	Open in IMG/M
3300005367\|Ga0070667_100194759	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300005440\|Ga0070705_101167662	Not Available	633	Open in IMG/M
3300005445\|Ga0070708_100060709	Not Available	3375	Open in IMG/M
3300005468\|Ga0070707_100091170	All Organisms → cellular organisms → Bacteria	2950	Open in IMG/M
3300005471\|Ga0070698_100093198	Not Available	2992	Open in IMG/M
3300005518\|Ga0070699_100067890	All Organisms → cellular organisms → Bacteria	3096	Open in IMG/M
3300005543\|Ga0070672_100215080	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1611	Open in IMG/M
3300005713\|Ga0066905_101975323	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005713\|Ga0066905_102311040	Not Available	503	Open in IMG/M
3300005843\|Ga0068860_100508955	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300006049\|Ga0075417_10027052	All Organisms → cellular organisms → Bacteria	2344	Open in IMG/M
3300006049\|Ga0075417_10069242	Not Available	1559	Open in IMG/M
3300006049\|Ga0075417_10545611	Not Available	586	Open in IMG/M
3300006196\|Ga0075422_10202219	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	817	Open in IMG/M
3300006844\|Ga0075428_100001674	All Organisms → cellular organisms → Bacteria → Proteobacteria	23616	Open in IMG/M
3300006844\|Ga0075428_100044604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4872	Open in IMG/M
3300006844\|Ga0075428_100545771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300006845\|Ga0075421_100919522	Not Available	997	Open in IMG/M
3300006847\|Ga0075431_100231209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1884	Open in IMG/M
3300006852\|Ga0075433_10303174	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1415	Open in IMG/M
3300006852\|Ga0075433_10523823	Not Available	1043	Open in IMG/M
3300006852\|Ga0075433_10799821	Not Available	824	Open in IMG/M
3300006852\|Ga0075433_10942508	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300006852\|Ga0075433_11637019	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300006852\|Ga0075433_11638080	Not Available	555	Open in IMG/M
3300006853\|Ga0075420_100807881	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300006854\|Ga0075425_101006263	Not Available	951	Open in IMG/M
3300006854\|Ga0075425_102954011	Not Available	521	Open in IMG/M
3300006871\|Ga0075434_101043741	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	831	Open in IMG/M
3300006880\|Ga0075429_101874246	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	520	Open in IMG/M
3300009094\|Ga0111539_10387969	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300009094\|Ga0111539_11431085	Not Available	802	Open in IMG/M
3300009094\|Ga0111539_12233272	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300009100\|Ga0075418_10243082	All Organisms → cellular organisms → Bacteria	1917	Open in IMG/M
3300009100\|Ga0075418_10510753	Not Available	1290	Open in IMG/M
3300009100\|Ga0075418_10635922	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300009100\|Ga0075418_11108207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	857	Open in IMG/M
3300009147\|Ga0114129_10044013	All Organisms → cellular organisms → Bacteria	6281	Open in IMG/M
3300009147\|Ga0114129_10050023	All Organisms → cellular organisms → Bacteria	5872	Open in IMG/M
3300009147\|Ga0114129_10076423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4662	Open in IMG/M
3300009147\|Ga0114129_10174269	All Organisms → cellular organisms → Bacteria	2930	Open in IMG/M
3300009147\|Ga0114129_10229248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2502	Open in IMG/M
3300009147\|Ga0114129_10232474	All Organisms → cellular organisms → Bacteria	2482	Open in IMG/M
3300009147\|Ga0114129_10448077	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1693	Open in IMG/M
3300009147\|Ga0114129_10609910	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300009147\|Ga0114129_10632001	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300009147\|Ga0114129_10701182	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300009147\|Ga0114129_10839193	All Organisms → cellular organisms → Bacteria	1169	Open in IMG/M
3300009147\|Ga0114129_11011057	Not Available	1046	Open in IMG/M
3300009147\|Ga0114129_11326294	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300009147\|Ga0114129_11451598	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300009147\|Ga0114129_11578850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	804	Open in IMG/M
3300009147\|Ga0114129_11787641	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	748	Open in IMG/M
3300009147\|Ga0114129_11871953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_68_14	728	Open in IMG/M
3300009147\|Ga0114129_11893219	Not Available	723	Open in IMG/M
3300009147\|Ga0114129_11945676	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300009147\|Ga0114129_12699808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300009147\|Ga0114129_12708545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300009147\|Ga0114129_12823737	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300009147\|Ga0114129_13062838	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009147\|Ga0114129_13257607	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300009147\|Ga0114129_13392993	Not Available	512	Open in IMG/M
3300009156\|Ga0111538_10673961	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300009156\|Ga0111538_11945687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	739	Open in IMG/M
3300009162\|Ga0075423_10293720	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1703	Open in IMG/M
3300009162\|Ga0075423_10489129	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300009162\|Ga0075423_10761254	Not Available	1024	Open in IMG/M
3300009162\|Ga0075423_12346342	Not Available	581	Open in IMG/M
3300009176\|Ga0105242_10177917	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300009553\|Ga0105249_10156849	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300009792\|Ga0126374_11551440	Not Available	545	Open in IMG/M
3300010043\|Ga0126380_10078281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1904	Open in IMG/M
3300010043\|Ga0126380_10330810	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300010043\|Ga0126380_10427061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	994	Open in IMG/M
3300010043\|Ga0126380_10616549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	857	Open in IMG/M
3300010043\|Ga0126380_11249604	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300010047\|Ga0126382_12307403	Not Available	520	Open in IMG/M
3300010360\|Ga0126372_12625061	Not Available	555	Open in IMG/M
3300010375\|Ga0105239_12633750	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300010401\|Ga0134121_13119882	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300012198\|Ga0137364_10636826	Not Available	804	Open in IMG/M
3300012360\|Ga0137375_10052596	All Organisms → cellular organisms → Bacteria	4435	Open in IMG/M
3300012948\|Ga0126375_10243545	Not Available	1213	Open in IMG/M
3300012948\|Ga0126375_10330134	Not Available	1073	Open in IMG/M
3300013308\|Ga0157375_10425798	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1493	Open in IMG/M
3300018028\|Ga0184608_10064296	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300018469\|Ga0190270_11405259	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300022534\|Ga0224452_1189084	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300025910\|Ga0207684_10063122	Not Available	3145	Open in IMG/M
3300025934\|Ga0207686_11223329	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300025986\|Ga0207658_11263409	Not Available	675	Open in IMG/M
3300025986\|Ga0207658_11751521	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300026523\|Ga0209808_1203791	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300027873\|Ga0209814_10024159	All Organisms → cellular organisms → Bacteria	2481	Open in IMG/M
3300027873\|Ga0209814_10161029	Not Available	964	Open in IMG/M
3300027880\|Ga0209481_10106943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1355	Open in IMG/M
3300027909\|Ga0209382_10000783	All Organisms → cellular organisms → Bacteria	51538	Open in IMG/M
3300028381\|Ga0268264_10117212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2342	Open in IMG/M
3300028878\|Ga0307278_10105944	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300030006\|Ga0299907_10059329	All Organisms → cellular organisms → Bacteria	3069	Open in IMG/M
3300030606\|Ga0299906_10498613	Not Available	933	Open in IMG/M
3300031562\|Ga0310886_10689578	Not Available	635	Open in IMG/M
3300033550\|Ga0247829_10769540	Not Available	802	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	62.40%
Environmental	Environmental	37.60%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	62.40%
Terrestrial	Environmental → Terrestrial	36.00%
Aquatic	Environmental → Aquatic	1.60%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	59.20%
Soil	Environmental → Terrestrial → Soil	36.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.20%
Sediment	Environmental → Aquatic → Sediment	1.60%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	56.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.60%
Loam	Environmental → Terrestrial → Soil → Loam	10.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.20%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.20%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.60%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	56.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.20%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.20%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.60%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.60%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	52.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.20%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.40%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725000	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWRP_01785690	2067725000	Soil	MSLLTELDAFFTDHHDCGDLDAGIDGPIVWIACDCGARMATRVGEEDDHVAVA
INPgaii200_12103102	2228664022	Soil	VSLLTELDAFFTDHHDCGDLDAGVEGPVVWIACLCGASMARRADTDDRA
F12B_105009292	3300000443	Soil	PAVSLLAELDAFYLEHRRCGDLDAGVDGEVVWIVCECGASMARRVGEEDDHVAVA*
F14TC_1006398703	3300000559	Soil	TELDAFFTDHMRCGQLDAGLEDTVVWIVRDCGASMARRVDEDAMPV*
JGI10214J12806_102046791	3300000891	Soil	TRTAYSGLPAVSLLTKLDVFYLDHRLCGELDAGVDGPFVWIGCECGVTVVRRANEDDHAGRD*
JGI1027J12803_1021448841	3300000955	Soil	VTLLTELDAFFTDHHDCAGVEGPVVWIACECGARMARRADADDRA*
JGI10216J12902_1026097912	3300000956	Soil	VSLLADLDAFSTEHRCCGDLDAGVEGPTVWIACPCRASMARRVDEGDALARDG*
JGI10216J12902_1056371704	3300000956	Soil	VSLMTELDAFFGEHGHCGDLDAGVDGQIVWVACDCGARMARSVDDADDARRP*
JGI10216J12902_1074076393	3300000956	Soil	MGLLTEPDASFADHPHCGDLEADVDGDVVWIACPCGARMARRVDEDDALASSD*
JGI10216J12902_1150563882	3300000956	Soil	VSLFADLNAFFAEHRRCGDPDAGLYGLTVWIACGCGASMARRVDEDDDAGQA*
Ga0062589_1000235304	3300004156	Soil	VSLLTKLDVFYLDHRLCGELDAGVDGPFVWIGCECGVTVVRRANEDDHAGRD*
Ga0063356_1001609254	3300004463	Arabidopsis Thaliana Rhizosphere	VSLLTDLDAFATEHRLCGDLDGGVEGAIAWMACDCGARMARRVDEGDLLAFNS*
Ga0063356_1053332872	3300004463	Arabidopsis Thaliana Rhizosphere	MSLLTELDAFYTEHQRCGELEAGVDVRIAWIVCDCGANMARRLNEDDR*
Ga0062595_1003685631	3300004479	Soil	FFTEHGRCGDLDAGVEGPVVWIACECGARMARRADADDRA*
Ga0066388_1007241063	3300005332	Tropical Forest Soil	MTLLTDLDAFLNEHRRCGDLEADVDGDVVWMACDCGARMARRVHEDHRLN*
Ga0066388_1057023783	3300005332	Tropical Forest Soil	DAFFTDHMRCGDLDAGVDGPIVWIACDCGASMARRVDEADDARRS*
Ga0066388_1082769462	3300005332	Tropical Forest Soil	VSLLTGLDAFFTDHHHCGDLDAGVEGDMVWIACDCGARMARRVDEDDDA
Ga0070667_1001947591	3300005367	Switchgrass Rhizosphere	RPRLQHFFTEHGRCGDLDAGVEGPVVWIACECGARMARRADADDRA*
Ga0070705_1011676621	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LDAFYMEHRDCGALEAGVDWPVVWIACGCGATIARRADD*
Ga0070708_1000607094	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNLLTALDAFYMEHRDCGALEAGVDWPVVWIACGCGATIARRADD*
Ga0070707_1000911707	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AMNLLTALDAFYMEHRDCGALEAGVDWPVVWIACGCGATIARRADD*
Ga0070698_1000931986	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNLLTELDAFYMEHRDCGAPEAGVDWPVVWIACGCGATIARRADD*
Ga0070699_1000678905	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNLLTALDTFYMEHRDCGALEAGVDWPVVWIACGCGATIARRADD*
Ga0070672_1002150802	3300005543	Miscanthus Rhizosphere	ELDAFFTDHHDCGDLDAGVEGPVVWIACECGARMARRADADDRA*
Ga0066905_1019753231	3300005713	Tropical Forest Soil	MNLLTELDAFYTDHRACGDLDAGVDGPIVWIACDCGGSMSRRFDEDERATAAG*
Ga0066905_1023110402	3300005713	Tropical Forest Soil	LDAFFTEHQRCGDLDAGVDGPIVWISCDCGARMARRVDEDESATVG*
Ga0068860_1005089552	3300005843	Switchgrass Rhizosphere	MSLLTELDAFYTEHRRCGELEAGVEGPTVWIACDCGARMARRADEDDYARPSRAVPLT*
Ga0075417_100270522	3300006049	Populus Rhizosphere	MSLLADLDAFYTDHRRCGDLDAGVDGPVAWFVCTCGARIARRVTTEDTL*
Ga0075417_100692422	3300006049	Populus Rhizosphere	MRRLAELEAFVTERHLCADLDAGVEGPIVWIACDCGASMARRTDEDDHASGD*
Ga0075417_105456111	3300006049	Populus Rhizosphere	VSLLTDLDAFFTDHMRCGELDAGGDGKMVRVSCDCGARMARRVDEADRAAAG*
Ga0075422_102022191	3300006196	Populus Rhizosphere	RYAHDGEPADRLDAFSTEHRRCGDLDAGVEGPVVWMAYDCRASMARRADVDDDARPAA*
Ga0075428_1000016742	3300006844	Populus Rhizosphere	VSLLTELDAFFTDHRRCATWTPGVDWPIVWIACPSGARMARPADEDERAGPT*
Ga0075428_1000446043	3300006844	Populus Rhizosphere	MTLLTDLDAFLNEHRRCGDLEADVDGDVAWMACECGARMARCVDEGDVLAFDD*
Ga0075428_1005457712	3300006844	Populus Rhizosphere	VTLLTELDAFFTDHRRCGDLDAGVDGPIVWVACDCGARMARRVAEDDRAAAR*
Ga0075421_1009195222	3300006845	Populus Rhizosphere	VSLLTDLDAFSTEHRRCGDLDGGVDRDIVWMACDCGARMARRVDEDDNAGRV*
Ga0075431_1002312091	3300006847	Populus Rhizosphere	KLDAFFTDHHRCGDLDAGVDDAIVWIECPCGASMARRADEGDALASDA*
Ga0075433_103031744	3300006852	Populus Rhizosphere	VSLLTELDAFYTEHGRCGDLDAGVDGPVAWFVSTCGARIARRVTTEDTL*
Ga0075433_105238231	3300006852	Populus Rhizosphere	LTELDAFFTDHHHFGDLDAGVDCPIVWIACSCGASMARRVDERDVLAFAD*
Ga0075433_107998211	3300006852	Populus Rhizosphere	MAVSLLTELDAFFTEHGRCGELDAGVEGEVVWIACDCGARMARRVDEDRRLT*
Ga0075433_109425083	3300006852	Populus Rhizosphere	VSLLTELGAFFIDHMRCGDLDAGVEGPVVWIACPCGAGMARRADEGDAVAFNA*
Ga0075433_116370192	3300006852	Populus Rhizosphere	AFFTEHQRCGELDAGVEGPVVWIACDCGARMARRADEDDYAGRG*
Ga0075433_116380802	3300006852	Populus Rhizosphere	VSLLTDLEALFTDNRHCGDLNAGVELPIVWIAFPCGASMARRVDERDALASND*
Ga0075420_1008078812	3300006853	Populus Rhizosphere	VSQLTELDLFTGHRQCGDLDAGVDGPIVWIACECGAGMARRADVDDALASDG*
Ga0075425_1010062633	3300006854	Populus Rhizosphere	VSLLADLNAFFTEHRQCGELDAGVDGPIVWFACECGARMTRRVDEANDAREA*
Ga0075425_1029540111	3300006854	Populus Rhizosphere	VSLLSDLGAFYTDHRLCGELDAGVDGPIVWFACECGARIVRRVIEDHG*
Ga0075434_1010437412	3300006871	Populus Rhizosphere	VSPLTELDAFFTDHRQCGDLDAGVDGPIVWIACPCGARMARRADEGDALASND*
Ga0075429_1018742462	3300006880	Populus Rhizosphere	MSLLTELDAFFTDHHDCGDLDAGIDEPIVWIACDCGARMARRVGEEDDHV
Ga0111539_103879694	3300009094	Populus Rhizosphere	VSPLSELDAFFTDHHHCGDLDAGVDGPIVWVACDCGARMARRVAEDDRAAAR*
Ga0111539_114310852	3300009094	Populus Rhizosphere	VSLLTDLDAFSTEHRRCGDLDAGVEGPVVWMAYDCRASMARRADVDDDARPAA*
Ga0111539_122332721	3300009094	Populus Rhizosphere	MSLLTELDAFFTDHHHCGDLDAGADWPIVWIACPCGASMARRADEATHIASDG*
Ga0075418_102430823	3300009100	Populus Rhizosphere	VSLLTELDAFFTDHQLCGDLHAGVDGPVVWMACDCGASMARRVDERDALASND*
Ga0075418_105107531	3300009100	Populus Rhizosphere	VTLLTELDAFFTDHHHCGDLDCGVEGEVVWIACDCGARIARRVNEGDAFAFDG*
Ga0075418_106359222	3300009100	Populus Rhizosphere	VSLLTDLDTFFTEHGRCGDLDAGVDDVMVWIACDCGASMAPRVDERDGHGAA*
Ga0075418_111082072	3300009100	Populus Rhizosphere	MSFLTERDVFFTEHHDCCDLKAGVEWPIVWVACPCGASVARRVDEGDVLAADG*
Ga0114129_100440133	3300009147	Populus Rhizosphere	VSVLTELDAFFTDHHHFGDLDAGVDCPIVWIACSCGASMARRVDERDVLAFAD*
Ga0114129_100500233	3300009147	Populus Rhizosphere	VTLLADLDAFFIDHHHCGDLDAGVEGPVVWIVCECGARMARRVEERDALAFND*
Ga0114129_100764237	3300009147	Populus Rhizosphere	VSLLTELGAFFTDHRQCGDLDAGVDGLVVWIACDCGARRARRSDEGDALASDD*
Ga0114129_101742693	3300009147	Populus Rhizosphere	MSLLTDLDAFFTDHSQCGELDARVEGPVVWIACPCGARMARRVDERDVLASSD*
Ga0114129_101876252	3300009147	Populus Rhizosphere	MPVSLLTDLDSFSIEHQRSADLDGGVDGDIVWFACDCDASIARRVEEDDDARPTSA*
Ga0114129_102292483	3300009147	Populus Rhizosphere	MSLLTDLDAFFIDHHHCGDLDAGVEGPVVWIARDCGASMARRVDEDDDAS*
Ga0114129_102324745	3300009147	Populus Rhizosphere	VSLLTELDGFFSGHWRCGDLDAGVEGPVVWIVCECGARMARHVDEDDRATAG*
Ga0114129_104480774	3300009147	Populus Rhizosphere	MAVSLLTELDAFFTEHGRCGDPDAGVEGEVVWIACDCGARMARRVDEDRRLT*
Ga0114129_106099102	3300009147	Populus Rhizosphere	VSLLAELDAFFTEHGRCGDLDAGGEGEVVWIACDCGASMARRVDEADEADDAGRT*
Ga0114129_106320012	3300009147	Populus Rhizosphere	VSLLTELDAFFTEHQPCGDLNAGVDGPIVWIACECGARMARRVDEGDVLAFDD*
Ga0114129_107011821	3300009147	Populus Rhizosphere	DLDAFLNEHRRCGDLEADVDGDVAWMACECGARMARCVDEGDVLAFDD*
Ga0114129_108391931	3300009147	Populus Rhizosphere	MSLLTELNAFFTDHHHCGDLDAGVDGPVVWIACECGARMARRVDEDRRLN*
Ga0114129_110110572	3300009147	Populus Rhizosphere	AFFTEHGRCGELDAGVEGEVVWIACDCGARMARRVEDDGVSRTP*
Ga0114129_113262941	3300009147	Populus Rhizosphere	VTLLTELDAFFTDHRRCGDLDAGVDGPIVWIACDCGASMARRADEGDVLAFDD*
Ga0114129_114515981	3300009147	Populus Rhizosphere	MTELDAFFGEHGHCGDLDAGVDGPVVWIACDCGARMARRADEGDHAGGD*
Ga0114129_115788502	3300009147	Populus Rhizosphere	VSLLTDLDAFFTDHRRCGDLDAAVDGPIVWMACDCGASMARRVDEGDHGPAA*
Ga0114129_117876413	3300009147	Populus Rhizosphere	VSLLTDLDAFFTEHRRCGELDADVDGAIVWMACDCGASMARRVDEDDRAGRD*
Ga0114129_118719532	3300009147	Populus Rhizosphere	VSLLTELDAFYTEHGRCGDLDAGVDGQIVWIACDCGARMARSVDDADDARRP*
Ga0114129_118932191	3300009147	Populus Rhizosphere	VTLLTELDAFFTDHRLCGDRDAGVDDAVVWIACDCGAAMARRVDEDGPGVRGL*
Ga0114129_119456762	3300009147	Populus Rhizosphere	MSLLTDLDAFYTDHRQCGDLDAGVEGDVVWIACDCGASMARRADEDDYAGRG*
Ga0114129_126998081	3300009147	Populus Rhizosphere	MSLLTGLDAVFADHRRFGELDAGVDGLIVWMACDCGASMARRLDEDAHAGPD
Ga0114129_127085451	3300009147	Populus Rhizosphere	MSFLTELDVFFTEHHDCCDLKAGVEWPIVWVACPCGARVARRVDEGDVLAADG*
Ga0114129_128237372	3300009147	Populus Rhizosphere	MRSAQYAVAVSLLTELDAFFTDQQRCGELDAGVDRPAVWIACECGARMARRADEGDALASDD*
Ga0114129_129249712	3300009147	Populus Rhizosphere	MSLLADLDAFYTDHRRCGDLDAGVDGPIVWIACDCGASTARRVDEDDHAGRD*
Ga0114129_130628382	3300009147	Populus Rhizosphere	VSLLTELDGFFTEQRRCGDLDAGVDGLVAWIAFDCGASMARRADEDDHGG*
Ga0114129_132576072	3300009147	Populus Rhizosphere	VSLLTDLDAFFIDHHDCGDLDGGVEWPIVWVACPCGASMARPMDVRDALACRD*
Ga0114129_133929932	3300009147	Populus Rhizosphere	VSLGAYFTEHRACGDLDAGVEGPVVWIVCECGARMARHVDEDDRATAG*
Ga0111538_106739612	3300009156	Populus Rhizosphere	VSLLTELDAFFTDHQLCGDLHAGVDGSVVWMACDCGASMARRVDERDALASND*
Ga0111538_119456871	3300009156	Populus Rhizosphere	VSLLTELDAFFTDHRQCGDLDAGVGGPVVWIACDCGARMARRVDEDDDALRLHDHRSA*
Ga0075423_102937202	3300009162	Populus Rhizosphere	VSLLTELDAFYTEHGRCGDLDAGVDGPVAWFVCTCGARIARRVTTEDTL*
Ga0075423_104891291	3300009162	Populus Rhizosphere	DLDAFYTDHRDCGELEAGIEGDVVWIACDCGARMARRADEDDYAGRG*
Ga0075423_107612541	3300009162	Populus Rhizosphere	MGLLTELDAFFTDHHHFGDLDAGVDCPIVWIACSCGASMARRVDERDVLAFAD*
Ga0075423_123463422	3300009162	Populus Rhizosphere	VSLLTELDAFFTDHRQCGDLDAGVEGPVVWIACDCGARMARRVDEGDALARDG*
Ga0075423_126402161	3300009162	Populus Rhizosphere	VTLLTELDAFYLDHRRCGELEAGVDGPVVWFDCECGATIARRVTEDHA*
Ga0105242_101779171	3300009176	Miscanthus Rhizosphere	ELDAFFTDHHDCGDLDAGVEGPVVWIACPCGASMARRADTDDRA*
Ga0105249_101568492	3300009553	Switchgrass Rhizosphere	AAVSLVTELNAFYVGHRQCGDLDAGVDGSVVWIACECGARMARRADADDRA*
Ga0126374_115514401	3300009792	Tropical Forest Soil	AMSLLTELDAFYTEHRRCGELDGAVEGDIVWIACDCGARMARRVDEDDTAGRD*
Ga0126380_100782813	3300010043	Tropical Forest Soil	MRALQPDADRYALRSFFTDHDHCGELDAGVDGPVVWMACDCGASRRVDEQATAG*
Ga0126380_103308101	3300010043	Tropical Forest Soil	LLTELDAFFTDHRQCGDLDSGVEGPVVWISCECGASMARRADDDVE*
Ga0126380_104270613	3300010043	Tropical Forest Soil	VSLLTELNAFFTDHDHCSDLDAGVDGPVVWMACDCGASMVRRADEDERATAG*
Ga0126380_106165491	3300010043	Tropical Forest Soil	VRLLTELDAFYTGHRQCGELDAGVEGDMVWIACDCGARMARRVDDDRRLN*
Ga0126380_112496042	3300010043	Tropical Forest Soil	VSLLTEQDARYTEQRRCGHQDAGVEAPIVWIACDCGATMARQVDEDQRATAG*
Ga0126382_123074032	3300010047	Tropical Forest Soil	VSLLTELNAFFTEHVRCGELDAGVDDEVVWIACECGARMATRVDEDERATA*
Ga0126372_126250611	3300010360	Tropical Forest Soil	MSLLTERDAFFTEHRRCGEVDAGVEGPIVWVACDCGARMARRVDEDDDARRA*
Ga0105239_126337501	3300010375	Corn Rhizosphere	SRPRLQHFFTEHGRCGDLDAGVEGPVVWIACECGARMARRADADDRA*
Ga0134121_131198822	3300010401	Terrestrial Soil	AVTLLADLDAFFTDHHDCGDLDAGVEGPVVWIACPCGASMARRADTDDRA*
Ga0137364_106368262	3300012198	Vadose Zone Soil	MNLLTALDAVYIDHRLCGELDAGVDGQIVWFACGCGASMARRADEDDHPTRY*
Ga0137375_100525962	3300012360	Vadose Zone Soil	VSLRTELDAFFTEHRLCGELDAGLDGPVVWIPCDCGASMACRADENDHAGRD*
Ga0126375_102435452	3300012948	Tropical Forest Soil	MSLLADLDAFFTDHLRCGELDAGVDEAIVWIACDCGASIVGRVDEGDDAGRLHDHRSA*
Ga0126375_103301342	3300012948	Tropical Forest Soil	MSLLTELDAFFTEHQRCGDLDAGVDGAVVWIACDCGARMAWRVDEDDHACRD*
Ga0157375_104257981	3300013308	Miscanthus Rhizosphere	PVYCGTIAAVSLVTELNAFYVGHRQCGDLDAGVEGPVVWIACECGARMARRADADDRA*
Ga0184608_100642961	3300018028	Groundwater Sediment	VSLLAELDAFYTEHRRCGELEAGVAGPTVWIAMARRVEEEDDARR
Ga0190270_114052592	3300018469	Soil	MSLLTELDAFYTEHQRCGELEAGVDDLVVWFECECGARMTRLIDYASWPSR
Ga0224452_11890842	3300022534	Groundwater Sediment	VSLLAELDAFYTEHRRCGELEAGVAGPTVWIAMARRVEEEDDARRP
Ga0207684_100631224	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNLLTALDAFYMEHRDCGALEAGVDWPVVWIACGCGATIARRADD
Ga0207686_112233291	3300025934	Miscanthus Rhizosphere	ELDAFFTDHHDCGDLDAGVEGPVVWIACPCGASMARRADTDDRA
Ga0207658_112634092	3300025986	Switchgrass Rhizosphere	VVSLLTELDAFFTDHHDCGDLDAGVEGPVVWIACECGARMARRADA
Ga0207658_117515212	3300025986	Switchgrass Rhizosphere	TTSLLTELDAFFTDHHDCGDLDAGVEGPVVWIACECGARMARRADADDRA
Ga0209808_12037912	3300026523	Soil	VSLLTELDAFFSEHRNYAELDAGVDGPIVWFACGCGARIERRVETPQPS
Ga0209814_100241594	3300027873	Populus Rhizosphere	MSLLADLDAFYTDHRRCGDLDAGVDGPVAWFVCTCGAQIARRVTTEDTL
Ga0209814_101610291	3300027873	Populus Rhizosphere	LEAFVTERHLCADLDAGVEGPIVWIACDCGASMARRTDEDDHASGD
Ga0209481_101069432	3300027880	Populus Rhizosphere	MTLLTDLDAFLNEHRRCGDLEADVDGDVAWMACECGARMARCVDEGDVLAFDD
Ga0209382_100007834	3300027909	Populus Rhizosphere	VSLLTELDAFFTDHRRCATWTPGVDWPIVWIACPSGARMARPADEDERAGPT
Ga0268264_101172124	3300028381	Switchgrass Rhizosphere	MSLLTELDAFYTEHRRCGELEAGVEGPTVWIACDCGARMARRADEDDYARPSRAVPLT
Ga0247822_103224402	3300028592	Soil	MSVLPDLDASYTDHRRYGVLEAGVNEPTVWIAYDCRASRARRVNEDDHAGRNWTGR
Ga0307278_101059442	3300028878	Soil	MSLLTELDAFFTDHRRCGDLDAGVDGPIVWIACECGARMARCVEERDALAFND
Ga0299907_100593293	3300030006	Soil	VSLLTGLDAFYTEHCRCGELEAGVEGPVIWIACECGASMARPVDEDAVA
Ga0299907_103566193	3300030006	Soil	LSAVPDADLRLLADLDGFYTEHHRCGELEASVDGPMVWIACDCGASMARRAAADDHADRERK
Ga0299906_104986133	3300030606	Soil	VTLLTKLDAFFTDHHECGELEAGVDGPVVWFDCECGARIARKVTEEDACAP
Ga0310886_106895781	3300031562	Soil	VTLLTELDACFTDHHDCGDVDAGVEGPVVWIACECGARMARGADADDRA
Ga0247829_107695403	3300033550	Soil	MSLLTKLDAFFTDHHHCGDLDAGVDGPVVWIACDFGANMARRLNEDDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F067901

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences