NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F067897

Metagenome / Metatranscriptome Family F067897

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F067897
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 56 residues
Representative Sequence MKPSEQRLSEARRQHTEAIVARHLDELFQRLPMLSGFWLRPDLEVAELSV
Number of Associated Samples 108
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil
(44.000 % of family members)
Environment Ontology (ENVO) Unclassified
(63.200 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
(47.200 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.31%    β-sheet: 0.00%    Coil/Unstructured: 57.69%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF00486Trans_reg_C 75.20
PF00072Response_reg 7.20
PF02518HATPase_c 4.80
PF00196GerE 4.00
PF13191AAA_16 0.80
PF13561adh_short_C2 0.80
PF13578Methyltransf_24 0.80
PF14104DUF4277 0.80



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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil44.00%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere5.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.80%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment4.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.20%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.20%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.20%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment2.40%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.40%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.40%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.60%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.60%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.60%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen1.60%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.60%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.80%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.80%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater0.80%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.80%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.80%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.80%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006606Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009168Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015EnvironmentalOpen in IMG/M
3300009527Groundwater microbial communities from Cold Creek, Nevada to study Microbial Dark Matter (Phase II) - Lower Cold CreekEnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009678Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100EnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011395Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT200_2EnvironmentalOpen in IMG/M
3300011398Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2EnvironmentalOpen in IMG/M
3300011405Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT400_2EnvironmentalOpen in IMG/M
3300011406Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2EnvironmentalOpen in IMG/M
3300011420Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2EnvironmentalOpen in IMG/M
3300011424Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT200_2EnvironmentalOpen in IMG/M
3300011427Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2EnvironmentalOpen in IMG/M
3300011437Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2EnvironmentalOpen in IMG/M
3300011440Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2EnvironmentalOpen in IMG/M
3300011441Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2EnvironmentalOpen in IMG/M
3300011445Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2EnvironmentalOpen in IMG/M
3300012034Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2EnvironmentalOpen in IMG/M
3300012038Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2EnvironmentalOpen in IMG/M
3300012039Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2EnvironmentalOpen in IMG/M
3300012041Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2EnvironmentalOpen in IMG/M
3300012113Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT100_2EnvironmentalOpen in IMG/M
3300012122Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT200_2EnvironmentalOpen in IMG/M
3300012133Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2EnvironmentalOpen in IMG/M
3300012134Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2EnvironmentalOpen in IMG/M
3300012137Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT560_2EnvironmentalOpen in IMG/M
3300012143Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT790_2EnvironmentalOpen in IMG/M
3300012157Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2EnvironmentalOpen in IMG/M
3300012168Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2EnvironmentalOpen in IMG/M
3300012171Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2EnvironmentalOpen in IMG/M
3300012173Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2EnvironmentalOpen in IMG/M
3300012175Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2EnvironmentalOpen in IMG/M
3300012179Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2EnvironmentalOpen in IMG/M
3300012228Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2EnvironmentalOpen in IMG/M
3300012232Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014200Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaGEnvironmentalOpen in IMG/M
3300014863Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT25_16_10DEnvironmentalOpen in IMG/M
3300014866Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT890_16_10DEnvironmentalOpen in IMG/M
3300014870Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT560_16_10DEnvironmentalOpen in IMG/M
3300014871Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_1DaEnvironmentalOpen in IMG/M
3300014872Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10DEnvironmentalOpen in IMG/M
3300014876Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10DEnvironmentalOpen in IMG/M
3300014877Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10DEnvironmentalOpen in IMG/M
3300014878Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200A_16_10DEnvironmentalOpen in IMG/M
3300014879Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10DEnvironmentalOpen in IMG/M
3300014883Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10DEnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015090Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5A, Northern proglacial tributary margin, adjacent to top of river)EnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015253Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT590_16_10DEnvironmentalOpen in IMG/M
3300015254Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10DEnvironmentalOpen in IMG/M
3300015258Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1DaEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018083Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300020065Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020067Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027573Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)EnvironmentalOpen in IMG/M
3300027722Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300028740Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_3EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033416Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_CEnvironmentalOpen in IMG/M
3300034148Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M
3300034354Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17EnvironmentalOpen in IMG/M
3300034417Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10912982313300000955SoilPQPRIARKAPLQPSEQRLSEACHQQTETIVARHMHELFRRLPMLSGFWVRSDLEVAELSVYTWPGYPASADLY
Ga0066810_1003870613300005169SoilMKPSEQHLSEVCRQHTEAVVARHVHELFKRLPMLSGFWLR
Ga0070670_10013257413300005331Switchgrass RhizosphereMKPPEQRLSEACRQQTEAIVCRHVNALFKRLPILSGFWLGPDLKVAELSVFTWPGYTAGADLYDA
Ga0070670_10212855823300005331Switchgrass RhizosphereMKSPDQRLTEARRQHTEAVIDRHVHELFQRLPFVCVFWLPPDLEVAELSVFSLSGGIAGW
Ga0070732_1080467223300005542Surface SoilMNHSEQRLSEVHRQHTEAMVARHVQQLFQRLPMLSGFCLGLDLKVAELSVFT
Ga0068857_10037789513300005577Corn RhizosphereMKISEQRPNDSRRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCGAGM
Ga0068870_1127937513300005840Miscanthus RhizosphereMKRPEQRLSEACRQQTEAIVCRHVNALFKRLPILSGFWLGPDLKVAELSVFTWPG
Ga0081539_1021355713300005985Tabebuia Heterophylla RhizosphereMNRSNECLNESRRQRNEVIVARHVHQLFQRLPMLCGFWLRPDLKITELSVLMGYTGMRG
Ga0075422_1042448023300006196Populus RhizosphereMKTSEQRRNETRREQTEAIVARHLHELFGRLPMLSGFWLGPDLELADVSVFDWPG
Ga0074062_1299152113300006606SoilMKPSEQRLSEAGRQQTEAIVARHLHELFKRLPMLSGFWLR
Ga0075431_10063372413300006847Populus RhizosphereMKTSEERRSEARRQHSEAILARHLDQLFQRLPMLAGFWLRPDLEVEELSVFT
Ga0105092_1048059113300009157Freshwater SedimentMKISEQRMNEARRQHTEAIVARHMDELFQRLPMLSGFWLRPDLELAELSIFTWPGYTAGRDLYEEV
Ga0105104_1024335013300009168Freshwater SedimentMKTSEQRLSEARRQHIEAIVARCVRELFKRLPMLSGFWLRPDLEAEVSVFTPPGCSAGRTLYEEVRLYEE
Ga0114942_144306323300009527GroundwaterMKPSEQRLCEARRHHTEAIIAQRVHQLFQRLPMLAGFWLRPDLEVAELSIF
Ga0105347_125460813300009609SoilVKLSEHGLSEARRQHTEAIVARHLSELFRRLPMLTGFWLRPDLEVDELSVFTWPG
Ga0105252_1050652623300009678SoilMKPSEQRQSEARRQHIEAIVARHVRELFKRLPMLSGFWLRPDLKAEVSAFTWLGCSSEWRLYDEVMRSLVALAEERPEAL
Ga0105252_1061207723300009678SoilMKPSEQRLSEARRQHTEAIVERHLSELFQRLPMLAGFWLRPDLELEELSVSTWPGYTAGRELYDE
Ga0116216_1055928823300009698Peatlands SoilMKASEQRLSEARRQHTEAIVAGHVRQLFQRLPMLS
Ga0126374_1179997223300009792Tropical Forest SoilMKASEQRLSEARRQHAEAIVARHVRQLFQRLPMLSGFWLHPALKVAELTVFT
Ga0134124_1116919423300010397Terrestrial SoilMKISEQRPNAARRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELS
Ga0105246_1108454513300011119Miscanthus RhizosphereMKISEQRPNAARRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCGAGMNLYEEVMKSLAELTEERPEAVQ
Ga0137315_101901623300011395SoilMKPSEQRVSEARGQHTEAIVARHLSELFQRLPMLAGFCLRPDLEV
Ga0137348_104008813300011398SoilMKLSEQRLNEARRQHTEAIVARHMDELFQRLPMLSGFWLR
Ga0137340_103214613300011405SoilMKPSEQRLSEARRQHTEAIVARHLRELFKRLPMLSGFWLRPDLE
Ga0137454_100751013300011406SoilMKPSEQRLSEARRQHTEAIVARHLSELFQRLPMLAGFWLRPDLEVDELSVFTWPGFAAG
Ga0137314_105533213300011420SoilMKISEQRMNEARRQHTEAIVARHMDELFQRLPMLSGFWLRPDLKVAEVSVFTWPGDI
Ga0137439_100035213300011424SoilMKPSEQRLTEARRQHTEAIVSRHLSELFQRLPMLSGFWLRPDLELAELSVFTWPGYTAGQDLYEEVMQSLVELA
Ga0137448_102618413300011427SoilMKPSEQRLTEARRQHTEAIVDRHLSELFQRLPMLAGFWLRPDLEVDELSVFTWPGFAAGP
Ga0137429_103495713300011437SoilMKTSAQREAQARRQHTEAIVERRLSELFQRLPMLAGFWLRPDLEL
Ga0137433_131407423300011440SoilMKSSEQRINEARRQHIEAIVAQHVHELFQRLPMLSGFWLRPD
Ga0137452_122056213300011441SoilMKPSEQRLSEARRQHIEAIVARHVRDLFKRLPMLSGFWLR
Ga0137427_1012796813300011445SoilMKPSEQRLNEARRQHTEAIVEQHLSELFQRLPMLAGFWLRPDLELEELSVS
Ga0137453_104271223300012034SoilMKPSGQRQIEARRQHTEAIVARHLDELFQRLPMLSGFWLQPDLGVAELSVFSWPGYTAGPERYE
Ga0137431_116585713300012038SoilMKPSEQRVSEARREHTEAIVARHLSELFQRLPMLAGFCLRPDLEVDELSVSTWPGYTAGRELYEEVM
Ga0137421_123101523300012039SoilMKPSEQRLTEARRQHTEAIVARHLSELFQRLPMLAGFWLRPDLEVDELSVFTWPGFAAG
Ga0137421_123260323300012039SoilMKPSEQRLNEARRQHTEAIVERHLSELFQRLPMLAGFWLRPDLELEELSVS
Ga0137430_117938723300012041SoilMKTSEQRLSEKRRQHTEAIVERHLSELFQRLPMLAGFWLRPDLEL
Ga0137328_103675723300012113SoilMKISEQRLNEARRQHNEAIVARHMDELFQRLPMLSGFWLRPDLEVAELSIFTWPGYTAGR
Ga0137332_102141023300012122SoilMKPSEQRVSEARRQHTEAIVARHLSELFQRLPMLAGFCL
Ga0137329_103908823300012133SoilMKPSEQRLIEARRQHTEAIVARHLSELFQRLPMLAGFWLRPDLEVDELSVFTWPGFAAG
Ga0137330_102707413300012134SoilMKPSEQRLSEAHRQHTEAIVARHLSGLFRRLPMLTGFWLRPDLEVDELSVFTWPGFAAGPELYEEVMQSLVELAEERPEA
Ga0137346_101614413300012137SoilMKPSEQRLTEARRQHTEAIVARHLSELFQRLPMLSGFWLRPDLEVDELSVFTWPGFAAGPELYEE
Ga0137354_101539413300012143SoilMKPSEQRLTEARRQHTEAFVAQHVNQLFQRLPMLSGFWLRHDLEVAELSVFTWPGC
Ga0137353_102892213300012157SoilMKPSEQRLSEARRQHIEAIVARHVRELFKRLPMLSGFWLRPD
Ga0137357_106287813300012168SoilMKPSEQRLSEARRQHTEAIVARHLSELFQRLPMLAGFWLRPDLEVDEL
Ga0137357_106370913300012168SoilMKPSEQRLTEARRQHTEAIVARHLSELFQRLPMLAGFWLRPDLEVD
Ga0137357_109834523300012168SoilMKPSEQRLSEARRQHTEAIVAQHIHQLFQRLPMLSGFCLQPDLEVAELSVFTWPGYTA
Ga0137342_104040713300012171SoilMKPSEQRLSEARRQHTEAIVAQHIHQLFQRLPMLSG
Ga0137327_112934023300012173SoilMKPSEQRVSEARREHTEAIVARHLSELFQRLPMLAGFCLRPDL
Ga0137321_112483023300012175SoilVKPSEHGLSEARRQHTEAIVARHLSELFRRLPMLTGFWLRPDLEVDELSVFTWPGFAAGPELYEEVMQSLV
Ga0137334_109475023300012179SoilMKTSEQRQSEARREHTESIITRHLEELFQRLPMLSGFSLRPDMDVAELSIFTWPG
Ga0137459_106323433300012228SoilMKTSEQRQLEARRGQTEAIVARHARELFQRLPMLTGF
Ga0137435_100826653300012232SoilMKTSEQRQSEARRQHTEAFVAQHVNQLFQRLPMLSGFWLRPDLEVAELSVFTWPGY
Ga0164302_1003669413300012961SoilMKPSEQRLSEACRQQTEAIVAQHVDQLFKRLPILSGFWLRPD
Ga0163162_1028932413300013306Switchgrass RhizosphereMKIFEQRPNAARRQRTEAIVARHMQELFQRLPVLLGFCLRPDLQVTELSICSWPGCGARMTLYEEVMKSLAELTEERPE
Ga0181526_1059511723300014200BogMKPSEQRVSEVCRQQTEAIVARHVHELFKRLPILSGFWLRPDLKVAELSVF
Ga0180060_100073813300014863SoilMKHSGQRLSEVRRQHTEAIVTRHLSELFQRLPMLAGFWLRPD
Ga0180090_101742513300014866SoilMKPSEQSLSEVRRQHTEAIVERHLSELFQRLPMLAGFCLQ
Ga0180080_101528513300014870SoilMKPSEQRLTEARRQHTEAIVDRHLSELFQRLPMLAGFWLRPDLEVDEL
Ga0180080_102348313300014870SoilMKPSEQRLSEARRQHTEAIVARHLDELFQRLPMLSGFWLRPDLEVAELSV
Ga0180095_101430113300014871SoilMKPSEQRLNEAHRQRTEAIVARHVYELFQRLPMLSGFWL
Ga0180087_110781423300014872SoilMKPSEQRLTEARRQHTEAIVDRHLSELFQRLPMLAGFWLRPDLEVDELSVFTWPGFAAGPELYEEV
Ga0180064_108150413300014876SoilMKPSEQRLREARRQHIEAIVARHVHELFKRLPMLS
Ga0180074_100064113300014877SoilMKPSEQRLSEARRQHTEAIVARHLDELFQRLPMLSGFWLRPDLDVAELSVCSWPGYTAGPDLYEEVLQSFVD
Ga0180065_102623213300014878SoilMKPSEQRLSEAHRQHTEAIVARHLSELFQRLPMLAGFWLRPDLEVDELSVFTWPGFAAGP
Ga0180065_113384413300014878SoilMKPSEQRLSEARRQHTEAIVERHLSELFQRLPMLAGFWLRPDL
Ga0180062_103015513300014879SoilMKPSEQRLSEARRQHIEAIVARHVRELFKRLPMLSGFWLRPDLEAEVSVFTWPGCSAGRGFYEEVMRSLVALVEERPEAVQLM
Ga0180086_105888113300014883SoilMKPSEQRLSEARRQHIEAIVARHVRELFKRLPMLSGFWLRPDLKAEVSVFTWLGCNSQW
Ga0180086_108238813300014883SoilMKPSEQRLNEAHRQRTEAIVAGHVYELFQRLPMLCGFWLQPDLKVAELSVFTWPACTAEPALY
Ga0180086_110641023300014883SoilMKPSGQRQSEARRQHTEAIVERHLSELFQRLPTLAGFWLRPDLELEELSVFTWPGYT
Ga0180104_100671213300014884SoilMKTSEQRLSEKRRQHTESIVERHLSELFQRLPMLSGFCLQPDLEVAELSVFT
Ga0157376_1122816713300014969Miscanthus RhizosphereMKIFEQRPNAARRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCGAGMNLYEEVMKSLAELTEERPEAVQLM
Ga0167634_102742913300015090Glacier Forefield SoilMNHSEQRPREVCRHHTEAIVSRHVHELFKRLPMLSGFWLRPDLKVAELSVFTWPGYTAGAGL
Ga0173478_1038315013300015201SoilMKIFEQRPNAARRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCGAGMNLYEE
Ga0180081_108033923300015253SoilMNRSEQRLSEARRQYNEAIVATHLHRLFRRLPMLSGFWLHPDLKIGEVVFSWTGCTAGRGPYDQVMDSLV
Ga0180081_109093613300015253SoilMKPSEQRLSETRRQHTEAIVAQHVNELFQRLPMLSGFWLRHDLEVDELSVVTWPGYSA
Ga0180089_109451213300015254SoilMKPSEQRLNEARRQRTEAIVAGHVYELFQRLPMLCGFWLRPDLEVDELSVYTWPACTAGPGVYEEVMQCLIDLAEERP
Ga0180093_105239123300015258SoilVKPSEQRLREARRQHIEAIVARYARELFKRLPMLSGFWLRPDLEAEVSVFTPPGCSAGRTLYE*
Ga0132258_1132533813300015371Arabidopsis RhizosphereMKPSEQRLSEARRHHTEAIIAQHVHQLFQRLPMLSGFWLRPDLEVAE
Ga0132258_1158590313300015371Arabidopsis RhizosphereMNYSEQRLREECQHTEAIVARHVRQLFQRLPMLSGFWLRLDLKV
Ga0132258_1262572313300015371Arabidopsis RhizosphereMKISEQHLNETRRQRTEAVVAGHMDELFRRLPMLSGFWLRPDLEVAELSVTWPGCTAGSE
Ga0132258_1320964343300015371Arabidopsis RhizosphereMKPSQQHPSEVCRQQTEAIVCRYVNELFTRLPILSGFWLEPHLEVTE
Ga0132256_10371648013300015372Arabidopsis RhizosphereMKISEQHMNEARRQNTEAIVAQHVHQLFQRLPMLSGFWLRPDLEVAELSI
Ga0132255_10031255013300015374Arabidopsis RhizosphereMKPSDQPQREAHRQHIETIVAQHVSELFKRLPMLSGFWLQPDLQ
Ga0132255_10135129813300015374Arabidopsis RhizosphereMKPSAQHLSEVCRQHTEAAVARHASELFKRLPMLSGFWLRPDLKVTELS
Ga0132255_10184077923300015374Arabidopsis RhizosphereMKSSEQRLSEARRQHTEAIVARHVCQLFQRLPMLS
Ga0163161_1071440913300017792Switchgrass RhizosphereMKRPEQRLSEACRQQTEAIVCRHVNALFKRLPILSGFWLGPDLKVAELSVFTWPGYTAGADLYDALMQSVVEFAEEHPE
Ga0184625_1051723313300018081Groundwater SedimentMKPSEQRLSEARRHHTEAIIAQHVHQLFQRLPMLSGFWL
Ga0184628_1049743323300018083Groundwater SedimentMKPSEQRLSEARRQHTEAIVAQHVHQLFQRLPMLSGFWLRPDLEVAELSVFTWPGYTAGRDLYEEVMQ
Ga0190270_1162501723300018469SoilMKISEQRMNEARRQHTEAIVALHMEELFQRLPMLSGFWLRPDLEVAELSIFT
Ga0180113_140111113300020065Groundwater SedimentMKHAGQRLSEVHRQHTEAIVARHLSGLFRRLPMLTGFWLRPDLEVAELSVFTWPGYTAGP
Ga0180109_136106013300020067Groundwater SedimentMKPSEQRLSEARRQHIEAIVARHVRELFKRLPMLSGFWLRPDL
Ga0207693_1133704223300025915Corn, Switchgrass And Miscanthus RhizosphereMKPSEQRLSEACRQQTEAIVAQHVDQLFKRLPILSGFWLRPDLQVEELSVFTWPGYTAA
Ga0207650_1080654323300025925Switchgrass RhizosphereMKPPEQRLSEACRQQTEAIVCRHVNALFKRLPILSGFWLGPDLKVAELSVFTWPGYTAGADLYDALMQS
Ga0207669_1066588313300025937Miscanthus RhizosphereMKPSEQSLSEARRQHIEAIVARYVRELFKRLPMLSGFWLR
Ga0207711_1173125613300025941Switchgrass RhizosphereMNPPEQRLSEACRQQTEAIVCRHVNALFKRLPILSGFWLGPDLKVAELSVFTWPGYTAGADLYDALMQSVVEFAEEHP
Ga0207676_1216043423300026095Switchgrass RhizosphereMKISEQRPNDSRRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCGAGMNLYEEVMKSLAELTEERPEA
Ga0207674_1110896013300026116Corn RhizosphereMKISEQRPNDSRRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCG
Ga0208454_114955513300027573SoilMKPSEQRVSEARREHTEAIVARHLSELFQRLPMLAGFCLRPDLEVDELSVSTWPGYTAGRELYEEVMESL
Ga0209819_1030410823300027722Freshwater SedimentMKTSEQRLSEARRQHIEAIVARHVRELFKRLPMLSGFWLRPDLEAEVSVFTPPGCSAGRTLYEE
Ga0209811_1042166123300027821Surface SoilMKPSDQPQREAHRQHIEAIVAQHVSELFKRLPMLSGFWLQPDLQAEVSVF
Ga0209039_1014223623300027825Bog Forest SoilMNHSEQRPSEARRQHNDAVVARHLHQLFQRLPMLSGFWLHPDLKVAEVVFTWSGYTAGRDLYDQVVESLVQLAEECPEAVLL
Ga0207428_1078115013300027907Populus RhizosphereMKTSEQRRNETRREQTEAIVARHLHELFGRLPMLSGFWLGPDLELADVSVFDWPGYEPGR
Ga0247828_1065055013300028587SoilMKISEQRMNEARRHHTEAMVARHMDELFQRLPMLSGFWLRPDPEAAELSIVTWPAEAAGRALWEEVMQSLAALA
Ga0302294_1016439223300028740FenMKPSEQRPSEARHRETEAIVARHARQLFERLPILSGFWLRL
Ga0310813_1061425233300031716SoilMKISEQRPNDSRRQRTEAIVARHMDQLFHRLPMLLGFCLRTDLQVVELSLCSWPGCGAGMNLYEEVMKSLAELTAE
Ga0307468_10031830513300031740Hardwood Forest SoilMKISEQRLNETRRQRTEAIVATHMDELFRRLPMLSGFWL
Ga0302322_10395141623300031902FenMKTSEQNLSEVCRRHTEAVVSRHVHELFKRLPILSGFWLRLDLEVA
Ga0310900_1056757423300031908SoilMKPSEQRLGEARRQQSEAIVAQHVHQLFQRLPMLSGFWLRPDLKVAELSVFSWPGYTDGGDLYEEVTQSLVDLAE
Ga0310900_1178157513300031908SoilMKTSEQRRNETRREQTEAIVARHLHELFGRLPMLSGFWLGPELELADVAVFDWPGYDPGRHLYEEVMQSLVDLA
Ga0310903_1035439923300032000SoilMKTSEQRRNETRREQTEAIVARHLHELFGRLPMLSGFWLGPDLELADV
Ga0310897_1005187913300032003SoilMKTSEQRRNETRREQTEAIVARHLHELFGRLPMLSGFWLGPDLELADVSVFDWPGYEP
Ga0310902_1041213223300032012SoilMKPSEQRLSEARRQHIEAIVARYVRELFKRLPMLSGFWLRPDLEAEVAVFTPPGCSAGRILYEEVSLYEEVMQSLGALAEERPEAVQLMRGR
Ga0307470_1096989013300032174Hardwood Forest SoilMKSSEQRLSEARRQHTEAIVAQHVHQLFQRLPMLSGFWLRPDLKVTELSVFTWPGYTA
Ga0307472_10109035913300032205Hardwood Forest SoilMNYSNQGSSEERRQHVEAIVARHLEQLFQRLPMLSGFWLRPDLNVAELTVFTWPGYTAGDALREEVVQ
Ga0307472_10178636113300032205Hardwood Forest SoilMKPSEQSLGEARRQHIEAIVARHVRELFTRLPMLSGFWLRP
Ga0335082_1147250023300032782SoilMNHSEQSLSEARRQHTEAIVTRHVRQLFERLPMLAGFWLRPDLK
Ga0335080_1176301323300032828SoilMNHSEQRPSGARRQHTEAIVVRHVHELFKRLPMLSGFWLRPDLELA
Ga0335084_1147573613300033004SoilMRPSEQRLSQAGRQHTGAIVARHPSELFQRLPMLAGFWLRPDLEVDELAVLT
Ga0316622_10288055813300033416SoilMNHSEQCLSEARRQHTEAIVARRVHDLFQRLPMLSGFWLRPDLEVA
Ga0364927_0036374_1091_12403300034148SedimentMKISEQRMNEARRQHTEAIVVRHIDELFQRLPMLSGFWLRPDLEVAVLSI
Ga0364929_0181169_480_6923300034149SedimentMKISEQRMNEARRQHTEAIVARHMDELFQRLPMLSGFWLRPDLELAELSIFTWPGYTAGRDLYEEVMQSLV
Ga0364933_136576_430_6303300034150SedimentMKASEQRLSEVCRQHAEAIVARHLRELFKRLPMLSGFWLRPDLKVAELSIFTWPGYHAGPDLYDEVT
Ga0364943_0163597_552_8063300034354SedimentMKPSEQRLSEARRQHIEAIVARHVRDLFKRLPMLSGFWLRPDLEAEVSVFTPPGCSAGRTLYEEVSLYEEVMQSLGALAEERPEA
Ga0364941_214060_292_5013300034417SedimentMKTSEQRQSEARLQHTEAIVARHLHELFRRLPMLSGFWLGPDLELADVSVFDWPGYEPGRPLYEEVMQSL


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