Metagenome / Metatranscriptome Family F067857

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F067857
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	56 residues
Representative Sequence	MDKHLLGTVWGLPASFALPSVAACRRALALIRPRLAQLQAADAARRHPRLALRAR
Number of Associated Samples	94
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.80 %
% of genes near scaffold ends (potentially truncated)	30.40 %
% of genes from short scaffolds (< 2000 bps)	90.40 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (64.800 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (12.800 % of family members)
Environment Ontology (ENVO)	Unclassified (62.400 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (75.200 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.60% β-sheet: 0.00% Coil/Unstructured: 49.40%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF00378	ECH_1	43.20
PF12773	DZR	30.40
PF00211	Guanylate_cyc	8.00
PF13191	AAA_16	4.00
PF01970	TctA	1.60
PF03401	TctC	0.80
PF00072	Response_reg	0.80
PF13426	PAS_9	0.80
PF13424	TPR_12	0.80
PF02518	HATPase_c	0.80

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	8.00
COG1784	TctA family transporter	General function prediction only [R]	1.60
COG3333	TctA family transporter	General function prediction only [R]	1.60
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.80 %
Unclassified	root	N/A	35.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.80 %
Unclassified	root	N/A	35.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.80 %
Unclassified	root	N/A	35.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	22.40 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.60 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	1.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	20.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.60 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.60 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	20.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.60 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.80 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	20.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.60 %
unclassified Burkholderiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.20 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	20.80 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	1.60 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	0.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.80 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004463\|Ga0063356_102823302	Not Available	748	Open in IMG/M
3300004643\|Ga0062591_102467652	Not Available	546	Open in IMG/M
3300005093\|Ga0062594_101700313	Not Available	659	Open in IMG/M
3300005293\|Ga0065715_10352895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	948	Open in IMG/M
3300005327\|Ga0070658_10669400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	901	Open in IMG/M
3300005327\|Ga0070658_11974171	Not Available	504	Open in IMG/M
3300005328\|Ga0070676_10019502	All Organisms → cellular organisms → Bacteria	3774	Open in IMG/M
3300005328\|Ga0070676_10766221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	710	Open in IMG/M
3300005328\|Ga0070676_10898290	Not Available	660	Open in IMG/M
3300005328\|Ga0070676_11121344	All Organisms → cellular organisms → Bacteria → Terrabacteria group	595	Open in IMG/M
3300005329\|Ga0070683_100794832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	907	Open in IMG/M
3300005330\|Ga0070690_100378284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1034	Open in IMG/M
3300005331\|Ga0070670_100197982	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300005331\|Ga0070670_100497721	Not Available	1083	Open in IMG/M
3300005331\|Ga0070670_100560871	Not Available	1019	Open in IMG/M
3300005331\|Ga0070670_100638632	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300005333\|Ga0070677_10022340	All Organisms → cellular organisms → Bacteria	2328	Open in IMG/M
3300005333\|Ga0070677_10220697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	926	Open in IMG/M
3300005333\|Ga0070677_10604327	Not Available	608	Open in IMG/M
3300005335\|Ga0070666_10955244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	635	Open in IMG/M
3300005338\|Ga0068868_101570535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	617	Open in IMG/M
3300005344\|Ga0070661_101359880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	597	Open in IMG/M
3300005347\|Ga0070668_100008548	All Organisms → cellular organisms → Bacteria	7603	Open in IMG/M
3300005353\|Ga0070669_100856585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	775	Open in IMG/M
3300005367\|Ga0070667_101036909	Not Available	766	Open in IMG/M
3300005455\|Ga0070663_100023705	All Organisms → cellular organisms → Bacteria	4117	Open in IMG/M
3300005457\|Ga0070662_101094005	Not Available	684	Open in IMG/M
3300005459\|Ga0068867_100009158	All Organisms → cellular organisms → Bacteria	6987	Open in IMG/M
3300005459\|Ga0068867_100257763	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300005459\|Ga0068867_100529115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1018	Open in IMG/M
3300005535\|Ga0070684_101650785	Not Available	605	Open in IMG/M
3300005539\|Ga0068853_101139543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	752	Open in IMG/M
3300005543\|Ga0070672_100090833	All Organisms → cellular organisms → Bacteria → Proteobacteria	2464	Open in IMG/M
3300005548\|Ga0070665_100496462	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300005564\|Ga0070664_100179274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1882	Open in IMG/M
3300005564\|Ga0070664_100718487	All Organisms → cellular organisms → Bacteria → Terrabacteria group	931	Open in IMG/M
3300005564\|Ga0070664_101506371	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300005578\|Ga0068854_100735008	Not Available	855	Open in IMG/M
3300005719\|Ga0068861_100325479	Not Available	1340	Open in IMG/M
3300006028\|Ga0070717_10327460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1366	Open in IMG/M
3300006046\|Ga0066652_100749908	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300006237\|Ga0097621_101152756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	729	Open in IMG/M
3300006358\|Ga0068871_101627738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	611	Open in IMG/M
3300006358\|Ga0068871_102087849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	540	Open in IMG/M
3300006881\|Ga0068865_101253889	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300006881\|Ga0068865_101616523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	583	Open in IMG/M
3300009094\|Ga0111539_11543308	Not Available	770	Open in IMG/M
3300009137\|Ga0066709_102216305	Not Available	757	Open in IMG/M
3300009148\|Ga0105243_11651073	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300009176\|Ga0105242_10539844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1116	Open in IMG/M
3300009177\|Ga0105248_11134566	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300009177\|Ga0105248_13264363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	516	Open in IMG/M
3300010147\|Ga0126319_1325759	Not Available	507	Open in IMG/M
3300010154\|Ga0127503_10168766	Not Available	714	Open in IMG/M
3300010401\|Ga0134121_10451412	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300010403\|Ga0134123_13630713	Not Available	501	Open in IMG/M
3300011332\|Ga0126317_10047937	Not Available	525	Open in IMG/M
3300012212\|Ga0150985_119451458	Not Available	1013	Open in IMG/M
3300012469\|Ga0150984_123598692	Not Available	922	Open in IMG/M
3300012902\|Ga0157291_10186843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	646	Open in IMG/M
3300012904\|Ga0157282_10083542	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012906\|Ga0157295_10205554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	631	Open in IMG/M
3300012907\|Ga0157283_10092488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	794	Open in IMG/M
3300012951\|Ga0164300_10715451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	609	Open in IMG/M
3300014325\|Ga0163163_12864613	Not Available	538	Open in IMG/M
3300014326\|Ga0157380_13023387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	536	Open in IMG/M
3300014969\|Ga0157376_11251212	Not Available	771	Open in IMG/M
3300014969\|Ga0157376_11592263	Not Available	687	Open in IMG/M
3300014969\|Ga0157376_13136757	Not Available	501	Open in IMG/M
3300015371\|Ga0132258_13340132	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300015372\|Ga0132256_103898599	Not Available	502	Open in IMG/M
3300015373\|Ga0132257_103028130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	612	Open in IMG/M
3300015374\|Ga0132255_100405835	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300015374\|Ga0132255_101664850	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300017656\|Ga0134112_10262563	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300017792\|Ga0163161_11084143	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300017792\|Ga0163161_11534894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	585	Open in IMG/M
3300018476\|Ga0190274_10516880	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300018476\|Ga0190274_10763636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1020	Open in IMG/M
3300018481\|Ga0190271_10186705	All Organisms → cellular organisms → Bacteria	2047	Open in IMG/M
3300018481\|Ga0190271_12364087	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300018920\|Ga0190273_12343874	Not Available	506	Open in IMG/M
3300022908\|Ga0247779_1102695	Not Available	747	Open in IMG/M
3300022911\|Ga0247783_1089299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	834	Open in IMG/M
3300025315\|Ga0207697_10012608	All Organisms → cellular organisms → Bacteria	3540	Open in IMG/M
3300025321\|Ga0207656_10567975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300025899\|Ga0207642_10007895	All Organisms → cellular organisms → Bacteria	3617	Open in IMG/M
3300025903\|Ga0207680_10565496	Not Available	812	Open in IMG/M
3300025907\|Ga0207645_10347537	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300025907\|Ga0207645_10774616	Not Available	652	Open in IMG/M
3300025908\|Ga0207643_10019020	All Organisms → cellular organisms → Bacteria	3762	Open in IMG/M
3300025920\|Ga0207649_10272799	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300025925\|Ga0207650_10269370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1384	Open in IMG/M
3300025925\|Ga0207650_11455799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	582	Open in IMG/M
3300025926\|Ga0207659_11548903	Not Available	566	Open in IMG/M
3300025931\|Ga0207644_10151962	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300025931\|Ga0207644_11127136	Not Available	659	Open in IMG/M
3300025934\|Ga0207686_10526222	Not Available	921	Open in IMG/M
3300025938\|Ga0207704_10381531	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300025940\|Ga0207691_10103222	All Organisms → cellular organisms → Bacteria	2542	Open in IMG/M
3300025941\|Ga0207711_11283063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	674	Open in IMG/M
3300025945\|Ga0207679_10311838	Not Available	1359	Open in IMG/M
3300025981\|Ga0207640_10704620	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300025986\|Ga0207658_11820821	Not Available	555	Open in IMG/M
3300026023\|Ga0207677_10587269	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300026067\|Ga0207678_10590480	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300026067\|Ga0207678_10603819	Not Available	962	Open in IMG/M
3300026088\|Ga0207641_11009667	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300026121\|Ga0207683_10134607	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300026121\|Ga0207683_10243090	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300028379\|Ga0268266_11888610	Not Available	571	Open in IMG/M
3300028592\|Ga0247822_11705181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	536	Open in IMG/M
3300028802\|Ga0307503_10144376	Not Available	1073	Open in IMG/M
3300028889\|Ga0247827_11074733	Not Available	551	Open in IMG/M
3300028889\|Ga0247827_11098608	Not Available	546	Open in IMG/M
3300031226\|Ga0307497_10166077	Not Available	930	Open in IMG/M
3300031366\|Ga0307506_10433290	Not Available	545	Open in IMG/M
3300031547\|Ga0310887_10724621	Not Available	619	Open in IMG/M
3300031939\|Ga0308174_10179664	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300031939\|Ga0308174_10899525	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300032074\|Ga0308173_10444968	Not Available	1150	Open in IMG/M
3300032074\|Ga0308173_11076001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	749	Open in IMG/M
3300032075\|Ga0310890_11249973	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300032075\|Ga0310890_11544195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	548	Open in IMG/M
3300033551\|Ga0247830_11475505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	544	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	68.00%
Environmental	Environmental	32.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	68.00%
Terrestrial	Environmental → Terrestrial	29.60%
Aquatic	Environmental → Aquatic	2.40%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.40%
Soil	Environmental → Terrestrial → Soil	28.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	22.40%
Roots	Host-Associated → Plants → Roots	3.20%
Freshwater	Environmental → Aquatic → Freshwater	2.40%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.60%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	33.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	24.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.80%
Loam	Environmental → Terrestrial → Soil → Loam	3.20%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.20%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.40%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.60%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.60%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	33.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.20%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.20%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.60%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.60%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	12.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	9.60%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	9.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	8.00%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.20%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.20%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.40%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.40%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.40%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.60%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.80%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.80%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300022911	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063356_1028233021	3300004463	Arabidopsis Thaliana Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRPHPAMRAR*
Ga0062591_1024676521	3300004643	Soil	DKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFRF*
Ga0062594_1017003131	3300005093	Soil	MDKHLLGVVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLSIRGL*
Ga0065715_103528952	3300005293	Miscanthus Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFRF*
Ga0070658_106694002	3300005327	Corn Rhizosphere	MDKHLLGTVWGLPASFALPSVAACRRALALIRPRLAQLQAADAARRHPRLAL
Ga0070658_119741712	3300005327	Corn Rhizosphere	MDKHLLGAIWGLPASFALPSVAACRRALAVIRPRLIQLQAADATRRQPRLAFRTR*
Ga0070676_100195023	3300005328	Miscanthus Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLRF*
Ga0070676_107662212	3300005328	Miscanthus Rhizosphere	MDKHLLKVVWGLPASFVLPSVATCRRALAHIRPRLTQLQATDRRRFPRPAHAAAGARF*
Ga0070676_108982901	3300005328	Miscanthus Rhizosphere	MDKHLLGTVWGLPASFALPSVAACRRALALIRPRLAQLQAADAARRHPRLALRAR*
Ga0070676_111213441	3300005328	Miscanthus Rhizosphere	MDKHLLGMVWGLPASFALPSVVVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV*
Ga0070683_1007948322	3300005329	Corn Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRPHPATRAR*
Ga0070690_1003782842	3300005330	Switchgrass Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNLRF*
Ga0070670_1001979823	3300005331	Switchgrass Rhizosphere	LRLTMDKHLLGLMWGLPASFALPSVAACRRALACMRTRLPQLQPPSLDRRRYPRPATAVRY*
Ga0070670_1004977212	3300005331	Switchgrass Rhizosphere	MDKHLLGTVWGLPASFALPSVAACRRALALIKPRLAQLQAADAARRHPRLALRAR*
Ga0070670_1005608712	3300005331	Switchgrass Rhizosphere	MDKHLLGVVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLAFRGL*
Ga0070670_1006386321	3300005331	Switchgrass Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAQIRPRLMQMQAADDARRFARPQQKLRF*
Ga0070677_100223402	3300005333	Miscanthus Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLKF*
Ga0070677_102206972	3300005333	Miscanthus Rhizosphere	MDKHLLGVVWGLPASFALPSVATCRRVLAHIRPRLTQLQAASAARRQPRLAFRGL*
Ga0070677_106043271	3300005333	Miscanthus Rhizosphere	MVWGLPASFALPSVAVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV*
Ga0070666_109552441	3300005335	Switchgrass Rhizosphere	MDKHLLGAIWGLPASFALPSVAACRRALAVIRPRLMQLQAADAARRQPRLAFRTR*
Ga0068868_1015705352	3300005338	Miscanthus Rhizosphere	MDKHLLGTVWGLPASFALPSVAACRRALALIRPRLAQLQAADAARRH
Ga0070661_1013598802	3300005344	Corn Rhizosphere	VRITMDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFRF
Ga0070668_1000085483	3300005347	Switchgrass Rhizosphere	MVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLRF*
Ga0070669_1008565852	3300005353	Switchgrass Rhizosphere	MDKHLLGVVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRL
Ga0070667_1010369091	3300005367	Switchgrass Rhizosphere	LPTSFALPSVAACRRALAHIRPRLMQLQAADDARRDSRSRGDLRF*
Ga0070663_1000237051	3300005455	Corn Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAQIRPRLMQMQAADDARRFARPQQKLKF*
Ga0070662_1010940051	3300005457	Corn Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRLHPAMRAR*
Ga0068867_1000091583	3300005459	Miscanthus Rhizosphere	MVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLKF*
Ga0068867_1002577631	3300005459	Miscanthus Rhizosphere	MDKHLLGVVWGLPASFALPSVATCRRVLAHIRPRLTQLQAASAAHRQPRLAFRGL*
Ga0068867_1005291152	3300005459	Miscanthus Rhizosphere	MLDTSYHRQMRITMDKHLLGLVWGLPASFALPSVATCRRVLTHIRPRLMQLQAANAARRQPLLAFRGL*
Ga0070684_1016507851	3300005535	Corn Rhizosphere	MDKHLLGTVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRPHPAMRAR*
Ga0068853_1011395431	3300005539	Corn Rhizosphere	MDKHLLGMVWGLPASFALPSVATCRRVLAHIRPRLMQLQAAHAARRQPRLALRGL*
Ga0070672_1000908331	3300005543	Miscanthus Rhizosphere	MDKHLLGMVWGLPASFALPSVAVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV*
Ga0070665_1004964622	3300005548	Switchgrass Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQLKF*
Ga0070664_1001792742	3300005564	Corn Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRPHQATRAR*
Ga0070664_1007184872	3300005564	Corn Rhizosphere	MDKHLLGMVWGLPASFALPSVGVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV*
Ga0070664_1015063712	3300005564	Corn Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKL
Ga0068854_1007350081	3300005578	Corn Rhizosphere	ESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLKF*
Ga0068861_1003254792	3300005719	Switchgrass Rhizosphere	MDKHLLGMVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLAFRGL*
Ga0070717_103274604	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MDKHLLGLMWGLPASFALPSVAACRRALACLRTRLPQRQAPAVERRRFPRPAAALPY*
Ga0066652_1007499082	3300006046	Soil	MDKRLLGLVWGLPASFALPSVAACRRALTVIRPALVRLQAADAARRQPRLALRAR*
Ga0097621_1011527561	3300006237	Miscanthus Rhizosphere	MRITMDKHLLGLVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLSIRGL*
Ga0068871_1016277381	3300006358	Miscanthus Rhizosphere	MDKHLLGMVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQP
Ga0068871_1020878491	3300006358	Miscanthus Rhizosphere	MDKHLLGAIWGLPASFALPSVAACRRALAVIRPRLIQLQAADATR
Ga0068865_1012538892	3300006881	Miscanthus Rhizosphere	MDKHLLGLVWGLPTSFALPSVAACRRALAHIRPRLMQLQAADDARRDSRSRGGLRF*
Ga0068865_1016165231	3300006881	Miscanthus Rhizosphere	MLDTSYHRQMRITMDKHLLGLVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLAFRGL*
Ga0111539_115433081	3300009094	Populus Rhizosphere	LLGLVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLRF*
Ga0066709_1022163051	3300009137	Grasslands Soil	LPASFVLPSVATCRRALVHIRPRLTQAQERRAVARSPRLALQAGHGQF*
Ga0105243_116510732	3300009148	Miscanthus Rhizosphere	MDKHLLGLVWGLPTSFALPSVAACRRALAHIRPRLMQLQAADDARRDSRSRGDLRF*
Ga0105242_105398442	3300009176	Miscanthus Rhizosphere	MLNTSYHRQMRITMDKHLLGLVWGLPASFALPSVATCRRVLTHIRPRLMQLQAANAARRQPLLAFRGL*
Ga0105248_111345662	3300009177	Switchgrass Rhizosphere	MDKHLLRLVWGLPTSFALPSVAACRRALAHIRPRLMQLQAADDARRDSRSRGDLRF*
Ga0105248_132643632	3300009177	Switchgrass Rhizosphere	MQPTMEKHLLGAVWGLPASFALPSVAACRRALALIRPRLVQLHAVDAARRCPQLA
Ga0126319_13257591	3300010147	Soil	KRITMDKHLLGLVWDLPTSFALPSVAACRRALAYIRPRLTQLQAVDDPRRGSRSRGDPRF
Ga0127503_101687662	3300010154	Soil	RIDQQHSRITMDKHLLGLVWGLPTSFALPSVAACRRALAHIRPQLLQLQAADDARRHARSRLHLRF*
Ga0134121_104514122	3300010401	Terrestrial Soil	MDKHLLGLVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQLKLKF*
Ga0134123_136307132	3300010403	Terrestrial Soil	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRLHPAMQAR*
Ga0126317_100479371	3300011332	Soil	IQPTMEKHLLGAVWGLPASFALPSVAACRRALALIRPRLVQLHAVDAARRCPQLALRGRP
Ga0150985_1194514582	3300012212	Avena Fatua Rhizosphere	QQMRLTMDKRLLKLVWGLPASFVLPSVATCRRALVHIRPRLTQAQERRAVARSPRLALQAGHGQF*
Ga0150984_1235986922	3300012469	Avena Fatua Rhizosphere	MDKRLLGLVWGLPASFALPSVAACRRAMAVIRPGLARLQAADATRRQPRLALRAR*
Ga0157291_101868432	3300012902	Soil	MDKHLLGLVWGLPASFALPSVAACRRVLVHIQPRLEQLQLADDVRLPARERRNFRF*
Ga0157282_100835422	3300012904	Soil	MDKHLLGLMWGLPASFALPSVAACRRALACMRTRLPQPQAPAVERRRFPRPAAAVSY*
Ga0157295_102055541	3300012906	Soil	MDKHLLGLMWGLPASFALPSVAACRRALARMWTRLPQPQAPAVERRRFPRPAAAVSY*
Ga0157283_100924881	3300012907	Soil	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRN
Ga0164300_107154512	3300012951	Soil	MDKHLLGLVWGLPTSFALPSVAACRRALAHIRPRLMQMQAADDARRFARRRTDFHF*
Ga0163163_128646132	3300014325	Switchgrass Rhizosphere	TMDKHLLGAVWGLPATFALPSVAACRRALALIRPRLVQLQTADAARPYPRLALRAR*
Ga0157380_130233872	3300014326	Switchgrass Rhizosphere	MLNTSYHRQMRITMDKHLLGLVWGLPASFALPSVATCRRVLTHIRPRLMQLQAANAARRQPR
Ga0157376_112512122	3300014969	Miscanthus Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRRPARERRNFRF*
Ga0157376_115922632	3300014969	Miscanthus Rhizosphere	MDKHLLEMVWGLPASFALPSVATCRRVLTHIRPRLMQLQAANAARRQPLLAFRGL*
Ga0157376_131367572	3300014969	Miscanthus Rhizosphere	MDKHLLGAVWGLPATFALPSVAACRRALALIRPRLVQLQTADAARPYPRLALRAR*
Ga0132258_133401322	3300015371	Arabidopsis Rhizosphere	MPINMDKHLLGLVWGLPESFALPSVAVCRRALALIRPRLMQMQAADDARRFARPQLKLRY
Ga0132256_1038985992	3300015372	Arabidopsis Rhizosphere	ITMDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFRF*
Ga0132257_1030281302	3300015373	Arabidopsis Rhizosphere	MRLTMDKHLLGVVWGLPASFVLPSVAACRRALAVIRPRLMQLQAADAARRQPRLAFRTR*
Ga0132255_1004058352	3300015374	Arabidopsis Rhizosphere	MRLTMDKHLLGVVWGLPASFVLPSVAACRRALAVIRPRLMQLQAADAARRQPRLALRTR*
Ga0132255_1016648502	3300015374	Arabidopsis Rhizosphere	VGLDQQQMPINMDKHLLGLVWGLPESFALPSVAVCRRALALIRPRLMQMQAADDACRFARPQLKLRY*
Ga0134112_102625632	3300017656	Grasslands Soil	MDKRLLKLVWGLPASFVLPSVATCRRALVHIRPRLTQAQERRAVARSPRLALQAGHGQF
Ga0163161_110841432	3300017792	Switchgrass Rhizosphere	MDKHLLGVVWGLPASFALPSVATCRRVLAHIRPRLMQLQAAHAARRQPRLAFRGL
Ga0163161_115348942	3300017792	Switchgrass Rhizosphere	LREPLRARPMLDTSYHRQMRITMDKHLLGLVWGLPTSFALPSVAACRRALAHIRPRLMQLQAADDARR
Ga0190274_105168803	3300018476	Soil	SNQHPQARITMDKHLLGLVWGLPASFALPSVAACRRALAHIQPQLEQLQVADDARRPARERRHLRF
Ga0190274_107636361	3300018476	Soil	MDKHLLGLVWCLPASFALPSVAACRRALAHIRPRLIHLQAGDAARRYPRFAVQAQ
Ga0190271_101867052	3300018481	Soil	MDKHLLGAVWGLPPTFALPSVAACRRALALIRPRLVQLQAADAARRYPRLALRAR
Ga0190271_123640872	3300018481	Soil	MDKHLLGLVWGLPASFALPSVAACRRALAHIQPQLEQLQVADDARRPARERRHLRF
Ga0190273_123438741	3300018920	Soil	LRWLRLDQKQLPLTMDKHLLGAIWGLPASFALPSVAASRRALAAIRPRLTQLQSADDARQAGLSRAALRF
Ga0247779_11026951	3300022908	Plant Litter	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFRF
Ga0247783_10892992	3300022911	Plant Litter	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPA
Ga0207697_100126085	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLKF
Ga0207656_105679752	3300025321	Corn Rhizosphere	MDKHLLGAIWGLPASFALPSVAACRRALAVIRPRLIQLQAADATRRQPRLAFRTR
Ga0207642_100078953	3300025899	Miscanthus Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAHIRPRLMQMQAADDARRFARPQQKLRF
Ga0207680_105654961	3300025903	Switchgrass Rhizosphere	MDKHLLGAIWGLPASFALPSVAACRRALAVIRPRLMQLQAADAARRQPRLAFRTR
Ga0207645_103475372	3300025907	Miscanthus Rhizosphere	MDKHLLKVVWGLPASFVLPSVATCRRALAHIRPRLTQLQATDRRRFPRPAHAAAGARF
Ga0207645_107746161	3300025907	Miscanthus Rhizosphere	MDKHLLGMVWGLPASFALPSVVVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV
Ga0207643_100190204	3300025908	Miscanthus Rhizosphere	MQPTMEKHLLGAVWGLPASFALPSVAACRRALALIRPRLVQLHAVDAARRCPQLALRGRP
Ga0207649_102727992	3300025920	Corn Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRPHPAMRAR
Ga0207650_102693701	3300025925	Switchgrass Rhizosphere	MDKHLLGAVWGLPATFALPSVAACRRALALIRPRLVQLQTADAARPYPRLALRAR
Ga0207650_114557992	3300025925	Switchgrass Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLP
Ga0207659_115489031	3300025926	Miscanthus Rhizosphere	MDKHLLGMVWGLPASFALPSVGVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV
Ga0207644_101519621	3300025931	Switchgrass Rhizosphere	QDQVRITMDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFRF
Ga0207644_111271361	3300025931	Switchgrass Rhizosphere	MDKHLLGLVWGLPTSFALPSVAACRRALAHIRPRLMQLQAADDARRDSRSRGDLRF
Ga0207686_105262222	3300025934	Miscanthus Rhizosphere	ITMDKHLLGLVWGLPASFALPSVATCRRVLTHIRPRLMQLQAANAARRQPLLAFRGL
Ga0207704_103815312	3300025938	Miscanthus Rhizosphere	MLDTSYHRQMRITMDKHLLGLVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLAFRGL
Ga0207691_101032223	3300025940	Miscanthus Rhizosphere	MDKHLLGMVWGLPASFALPSVAVCRRMLAHIRPRLMQLQAADAIRCYPQLASRASSV
Ga0207711_112830631	3300025941	Switchgrass Rhizosphere	MQPTMEKHLLGAVWGLPASFALPSVAACRRALALIRPRLVQLHAVDAARRCPQ
Ga0207679_103118383	3300025945	Corn Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALTLMRPRLMQLEVDDAARRRPHQATRAR
Ga0207640_107046202	3300025981	Corn Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRTLTLMRPRLMQLEVDDAARRRPHPAMRAR
Ga0207658_118208211	3300025986	Switchgrass Rhizosphere	SFALPSVAACRRALAHIRPRLMQLQAADDARRDSRSRGDLRF
Ga0207677_105872692	3300026023	Miscanthus Rhizosphere	MDKHLLGTVWGLPASFALPSVAACRRALALIRPRLAQLQAADAARRHPRLALRAR
Ga0207678_105904802	3300026067	Corn Rhizosphere	MDKHLLGMVWGLPASFALPSVAVCRRMLAHVRPRLMQLQAADAIRCYPQLASRASSV
Ga0207678_106038191	3300026067	Corn Rhizosphere	MDKHLLGMVWGLPESFALPSVAACRRALAQIRPRLMQMQAADDARRFARPQQKLKF
Ga0207641_110096672	3300026088	Switchgrass Rhizosphere	MQPTMEKHLLGAVWGLPATFALPSVAACRRALAVIRPRLIQLQAADATRRQPRLAFRTR
Ga0207683_101346073	3300026121	Miscanthus Rhizosphere	MEKHLLGAVWGLPASFALPSVAACRRALALIRPRLVQLHAVDAARRCPQLALRGRP
Ga0207683_102430903	3300026121	Miscanthus Rhizosphere	MDKHLLGLVWGLPTSFALPSVAACRRALAHIRLRLMQMQAADDARRFARPQLKLKF
Ga0268266_118886102	3300028379	Switchgrass Rhizosphere	MDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNLRF
Ga0247822_117051812	3300028592	Soil	MDKHLLGLMWGLPASFALPSVAACRRALACMRTRLPQPQAPAVERRRFPRPAAAVSY
Ga0307503_101443762	3300028802	Soil	LDHQQKRFTMDKHLLRLVWGLPTSFALPSVAACRRVLAHIGPRLMQLQAADDARRDSRSRLNLRF
Ga0247827_110747331	3300028889	Soil	VDQQRTRIIMDKHLLGMVWGLPASFALPSVATCRRVLAHIRPRLMQLQAANAARRQPRLAFRGL
Ga0247827_110986082	3300028889	Soil	QVRITMDKHLLGLVWGLPASFALPSVAACRRALVHIQPRLEQLQLADDVRLPARERRNFR
Ga0307497_101660772	3300031226	Soil	MRFTMDKHLLGLVWGLPTSFALPSVAACRRALAHIRPRLMQLQAADDARRGSRSRLDLRF
Ga0307506_104332902	3300031366	Soil	MDKNILGLVWGLPTSFALPSVADCRRAMALIGPRLAQLQAADEARRYTCSGMARRF
Ga0310887_107246212	3300031547	Soil	GVVWGLPASFALPSVATCRRVLAHIRPRLTQLQAASAARRQPRLAFRGL
Ga0308174_101796642	3300031939	Soil	MDKRLLGLVWGLPASFALPSVAACRRALTVIRPALVRLQAADAARRQPRLALRAR
Ga0308174_108995252	3300031939	Soil	MDKHLLKLVWGLPASFVLPSVATCRRALAHIRPRLTQLQATDRRRYPRPAPAAAGARF
Ga0308173_104449681	3300032074	Soil	MPNVMDKRLLGLVWGLPSSFVLPSVAACRRALAHIHPRLTQLQATDRRRHPRPAYAAAGARF
Ga0308173_110760012	3300032074	Soil	MDKHLLKLVWGLPASFVLPSVATCRRALAHIRPRLTPLQATDRRRYPRPAPAAAGARF
Ga0310890_112499732	3300032075	Soil	MRRTMEKHLLGMVWGLPASFSLPSVATCRRVLAQIRPRLIQLQAADAVRRSPRLAFRPQ
Ga0310890_115441951	3300032075	Soil	MWGLPASFALPSVAACRRALACMWTRLPQPQAPAVERRRFPRPAAAVSY
Ga0247830_114755051	3300033551	Soil	MDKHLLGLMWGLPASFALPSVAACRRALACMWTRLPQPQAPAVERRRFPRPAAAVSY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067857

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences