 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F067766 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 125 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 125 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.80 % |
| % of genes near scaffold ends (potentially truncated) | 97.60 % |
| % of genes from short scaffolds (< 2000 bps) | 84.80 % |
| Associated GOLD sequencing projects | 79 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (56.000 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (36.800 % of family members) |
| Environment Ontology (ENVO) | Unclassified (72.000 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (83.200 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 74.47% β-sheet: 0.00% Coil/Unstructured: 25.53% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 125 Family Scaffolds |
|---|---|---|
| PF03083 | MtN3_slv | 8.80 |
| PF13155 | Toprim_2 | 4.80 |
| PF11753 | DUF3310 | 2.40 |
| PF00476 | DNA_pol_A | 1.60 |
| PF13730 | HTH_36 | 0.80 |
| PF02867 | Ribonuc_red_lgC | 0.80 |
| COG ID | Name | Functional Category | % Frequency in 125 Family Scaffolds |
|---|---|---|---|
| COG4095 | Sugar transporter, SemiSWEET family, contains PQ motif | Carbohydrate transport and metabolism [G] | 8.80 |
| COG0749 | DNA polymerase I, 3'-5' exonuclease and polymerase domains | Replication, recombination and repair [L] | 1.60 |
| COG0209 | Ribonucleotide reductase alpha subunit | Nucleotide transport and metabolism [F] | 0.80 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 56.00 % |
| All Organisms | root | All Organisms | 44.00 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 36.80% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 12.80% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 10.40% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 8.80% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 4.80% |
| Soil | Environmental → Terrestrial → Soil → Clay → Unclassified → Soil | 3.20% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 2.40% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 2.40% |
| Microbial Mat | Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat | 1.60% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 1.60% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.60% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.60% |
| Hypersaline Lake Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment | 1.60% |
| Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 0.80% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.80% |
| Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 0.80% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 0.80% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 0.80% |
| Estuary Water | Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water | 0.80% |
| M | Environmental → Aquatic → Marine → Unclassified → Unclassified → M | 0.80% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.80% |
| Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 0.80% |
| Marine Sediment | Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment | 0.80% |
| Water | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water | 0.80% |
| Saline Water And Sediment | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment | 0.80% |
| Macroalgal Surface | Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface | 0.80% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
| 3300000117 | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 | Environmental | Open in IMG/M |
| 3300000930 | Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m | Environmental | Open in IMG/M |
| 3300000947 | Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92 | Host-Associated | Open in IMG/M |
| 3300001748 | Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m) | Environmental | Open in IMG/M |
| 3300002242 | Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat | Environmental | Open in IMG/M |
| 3300005731 | Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14 | Environmental | Open in IMG/M |
| 3300006025 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006026 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006400 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 | Environmental | Open in IMG/M |
| 3300006869 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA | Environmental | Open in IMG/M |
| 3300006919 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 | Environmental | Open in IMG/M |
| 3300006920 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 | Environmental | Open in IMG/M |
| 3300007276 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 | Environmental | Open in IMG/M |
| 3300007344 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 | Environmental | Open in IMG/M |
| 3300007345 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 | Environmental | Open in IMG/M |
| 3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
| 3300007623 | Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG | Environmental | Open in IMG/M |
| 3300007864 | Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461B_3.0um | Environmental | Open in IMG/M |
| 3300007960 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG | Environmental | Open in IMG/M |
| 3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
| 3300009435 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 | Environmental | Open in IMG/M |
| 3300009495 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 | Environmental | Open in IMG/M |
| 3300009507 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 | Environmental | Open in IMG/M |
| 3300010296 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA | Environmental | Open in IMG/M |
| 3300010297 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA | Environmental | Open in IMG/M |
| 3300010299 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA | Environmental | Open in IMG/M |
| 3300010316 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300010318 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNA | Environmental | Open in IMG/M |
| 3300011128 | Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_2, 0.02 | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017708 | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG | Environmental | Open in IMG/M |
| 3300017709 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27 | Environmental | Open in IMG/M |
| 3300017717 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25 | Environmental | Open in IMG/M |
| 3300017728 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24 | Environmental | Open in IMG/M |
| 3300017739 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 | Environmental | Open in IMG/M |
| 3300017743 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17 | Environmental | Open in IMG/M |
| 3300017744 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23 | Environmental | Open in IMG/M |
| 3300017751 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2) | Environmental | Open in IMG/M |
| 3300017752 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22 | Environmental | Open in IMG/M |
| 3300017753 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26 | Environmental | Open in IMG/M |
| 3300017758 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30 | Environmental | Open in IMG/M |
| 3300017776 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23 | Environmental | Open in IMG/M |
| 3300017783 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10 | Environmental | Open in IMG/M |
| 3300017956 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017963 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG | Environmental | Open in IMG/M |
| 3300017967 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018041 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018048 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018080 | Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG | Environmental | Open in IMG/M |
| 3300018420 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018421 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018424 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018876 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300019751 | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG | Environmental | Open in IMG/M |
| 3300020173 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041408US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020191 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020194 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300021335 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540 | Environmental | Open in IMG/M |
| 3300021425 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284 | Environmental | Open in IMG/M |
| 3300022057 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2) | Environmental | Open in IMG/M |
| 3300022065 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2) | Environmental | Open in IMG/M |
| 3300022071 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2) | Environmental | Open in IMG/M |
| 3300022158 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3) | Environmental | Open in IMG/M |
| 3300022167 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2) | Environmental | Open in IMG/M |
| 3300022187 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3) | Environmental | Open in IMG/M |
| 3300022929 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG | Environmental | Open in IMG/M |
| 3300023109 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG | Environmental | Open in IMG/M |
| 3300023116 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG | Environmental | Open in IMG/M |
| 3300024262 | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025610 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025626 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) | Environmental | Open in IMG/M |
| 3300025653 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025671 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) | Environmental | Open in IMG/M |
| 3300025705 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes) | Environmental | Open in IMG/M |
| 3300025771 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025849 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes) | Environmental | Open in IMG/M |
| 3300025853 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes) | Environmental | Open in IMG/M |
| 3300025870 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025880 | Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes) | Environmental | Open in IMG/M |
| 3300025889 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes) | Environmental | Open in IMG/M |
| 3300027298 | Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35 (SPAdes) | Environmental | Open in IMG/M |
| 3300029448 | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 | Environmental | Open in IMG/M |
| 3300031539 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 | Environmental | Open in IMG/M |
| 3300031566 | Soil microbial communities from Risofladan, Vaasa, Finland - UN-1 | Environmental | Open in IMG/M |
| 3300031658 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78 | Environmental | Open in IMG/M |
| 3300031696 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262 | Environmental | Open in IMG/M |
| 3300032274 | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1 | Environmental | Open in IMG/M |
| 3300032373 | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2 | Environmental | Open in IMG/M |
| 3300034374 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4) | Environmental | Open in IMG/M |
| 3300034375 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4) | Environmental | Open in IMG/M |
| 3300034418 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| DelMOSpr2010_101177354 | 3300000116 | Marine | SMLNTLHETNDLWLSDVHNLSSLRYELVELLDAEWNPDTYRYVKRKNN* |
| DelMOSpr2010_102048091 | 3300000116 | Marine | FKYINKIDSMLNTLHETNDLWLSDVHNLSSLRYELVELLDAEWDSNTYRYIKRGSK* |
| DelMOWin2010_100678091 | 3300000117 | Marine | NEYDDMFKYINKLRSMLSTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKRGQG* |
| BpDRAFT_105996863 | 3300000930 | Freshwater And Marine | TLHETNDLWLSDVHNLSSLRYELVELLDAEWDSNNYRYKKRGS* |
| BBAY92_101115653 | 3300000947 | Macroalgal Surface | LNTLHETNDLWLSDVHNLSSLRYELVELLDAEWNPDTYRYIKRGSK* |
| JGI11772J19994_100071214 | 3300001748 | Saline Water And Sediment | LNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK* |
| KVWGV2_108514871 | 3300002242 | Marine Sediment | LHETNDMWLSDVHNLSSLKWELIEMLDAEWNADTYRYVKRGSK* |
| Ga0076919_10447171 | 3300005731 | M | ETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK* |
| Ga0075474_101702701 | 3300006025 | Aqueous | SMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGAK* |
| Ga0075478_101715561 | 3300006026 | Aqueous | TLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK* |
| Ga0075503_13913311 | 3300006400 | Aqueous | MLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDSGSYRYIKRG* |
| Ga0070749_103898663 | 3300006802 | Aqueous | HETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK* |
| Ga0070749_104577173 | 3300006802 | Aqueous | FKYIGKLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK* |
| Ga0070749_106520592 | 3300006802 | Aqueous | HETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGTK* |
| Ga0070754_100748191 | 3300006810 | Aqueous | LWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK* |
| Ga0070754_105053752 | 3300006810 | Aqueous | LSDVQNLHSLKWELVEMLDAEWNPNTYKYVKRGTK* |
| Ga0070754_105314533 | 3300006810 | Aqueous | DLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGAK* |
| Ga0070754_105378741 | 3300006810 | Aqueous | HETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK* |
| Ga0075477_103793432 | 3300006869 | Aqueous | HETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKRGQG* |
| Ga0070746_102544411 | 3300006919 | Aqueous | MLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWDTDTYIYKKR* |
| Ga0070746_105509951 | 3300006919 | Aqueous | LHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKRVQG* |
| Ga0070748_11599531 | 3300006920 | Aqueous | FKYINKIDSMLNTLHETSDLWLSDVHNLSSLRWELTQLLDAEWNPDTYRYVKRGSK* |
| Ga0070747_10862741 | 3300007276 | Aqueous | LSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGAK* |
| Ga0070745_11835303 | 3300007344 | Aqueous | LSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK* |
| Ga0070745_13515192 | 3300007344 | Aqueous | SDVQNLHSLKWELVEMLDAEWNPNTYKYVKRGTK* |
| Ga0070752_10768012 | 3300007345 | Aqueous | MLNTLHETNDLWLSDVHNLSSLRWELTQLLDAKWNPDTYRYVKRGSK* |
| Ga0070752_12046603 | 3300007345 | Aqueous | LHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG* |
| Ga0070752_12915003 | 3300007345 | Aqueous | WLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGAK* |
| Ga0070752_13695031 | 3300007345 | Aqueous | TLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKRGQG* |
| Ga0099849_13720362 | 3300007539 | Aqueous | KLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK* |
| Ga0102948_11749461 | 3300007623 | Water | SMLSTLHETNDLWLSDVHNLDSLQYDLVNLLDAKWDAGSYRYVKRGQGK* |
| Ga0105749_10197191 | 3300007864 | Estuary Water | LHETNDLWLSDVHNLSSLRYELVELLDAEWDSNNYRYKKRGS* |
| Ga0099850_11483264 | 3300007960 | Aqueous | SDVHNLSSLKWELVEMLDAEWNPDAYRYVKRGNK* |
| Ga0075480_103630231 | 3300008012 | Aqueous | KYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK* |
| Ga0115546_10993404 | 3300009435 | Pelagic Marine | DTLFKYIGKLESMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGAK* |
| Ga0115571_10802141 | 3300009495 | Pelagic Marine | SMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGNK* |
| Ga0115572_100479731 | 3300009507 | Pelagic Marine | KLESMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGNK* |
| Ga0129348_10409897 | 3300010296 | Freshwater To Marine Saline Gradient | YDTLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRWELVQLLDAEWDSNSYRYIKRGSK |
| Ga0129348_12062131 | 3300010296 | Freshwater To Marine Saline Gradient | IGKLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK* |
| Ga0129345_11760814 | 3300010297 | Freshwater To Marine Saline Gradient | WLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK* |
| Ga0129345_12352251 | 3300010297 | Freshwater To Marine Saline Gradient | MLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKQGQG* |
| Ga0129345_12830461 | 3300010297 | Freshwater To Marine Saline Gradient | LNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDSGSYRYIKRG* |
| Ga0129342_10035781 | 3300010299 | Freshwater To Marine Saline Gradient | MLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG* |
| Ga0136655_12099492 | 3300010316 | Freshwater To Marine Saline Gradient | LDTLHETNDLWLSDVHNLDSLKYDLVKLLDAKWDSGSYRYIKRG* |
| Ga0136656_10714011 | 3300010318 | Freshwater To Marine Saline Gradient | LDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK* |
| Ga0136656_12218124 | 3300010318 | Freshwater To Marine Saline Gradient | LSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNADTYRYVKRGSK* |
| Ga0151669_1346602 | 3300011128 | Marine | MITLFKYINKIDSMLNTLHETNDLWLSDVHNLSSLRYELVQLLDAEWDSNTYRYIKRGSK |
| Ga0180120_100511365 | 3300017697 | Freshwater To Marine Saline Gradient | QETNDLWLSDVHNLSSLRWELTKLLDAEWNQDTYRYVKRGSK |
| Ga0180120_101702191 | 3300017697 | Freshwater To Marine Saline Gradient | LWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGSK |
| Ga0181369_10462904 | 3300017708 | Marine | ETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGNK |
| Ga0181387_10470901 | 3300017709 | Seawater | SMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNADTYRYVKRGSK |
| Ga0181404_11430841 | 3300017717 | Seawater | TLHETSDLWLSDVHNLETFKYDLVRLLDAEWNSDTYKYIKRGSKXLEK |
| Ga0181404_11557441 | 3300017717 | Seawater | SMLNTLQETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK |
| Ga0181419_10936341 | 3300017728 | Seawater | DLWLSDVHNLSSLRYELVELLDAEWNPDTYRYIKRGSK |
| Ga0181433_10740012 | 3300017739 | Seawater | TLHETNDLWLSDVHNLSSLKYELVELLDAEWDSNNYRYKKRGS |
| Ga0181402_11289373 | 3300017743 | Seawater | YDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGAK |
| Ga0181397_10334274 | 3300017744 | Seawater | ETNDLWISDVHNLDSLKYELVKMLDAEWNTDSYRYIKRGS |
| Ga0187219_12172483 | 3300017751 | Seawater | LFKYIGKLESMLSTLHETNDLWLSDVHTLNSLKWELVEMLDAEWNADTYRYVKRGNK |
| Ga0181400_11265381 | 3300017752 | Seawater | LESMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGNK |
| Ga0181407_10939834 | 3300017753 | Seawater | FKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGSK |
| Ga0181409_12365612 | 3300017758 | Seawater | FKYINKLDSILNTLHETSDLWLSDVHNLETFKYDLVRLLDAEWNSDTYKYIKRGSKXLEK |
| Ga0181394_101421510 | 3300017776 | Seawater | LWLSDVHNLNSLKWELVEMLDAEWNSDTYRYVKRGNK |
| Ga0181379_13034871 | 3300017783 | Seawater | SEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGSK |
| Ga0181580_106152461 | 3300017956 | Salt Marsh | EYDTMFKYIDKLRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSNTYKYIKRGT |
| Ga0180437_110390041 | 3300017963 | Hypersaline Lake Sediment | HETNDLWLSDVQNLHSLKWELVEMLDAEWNQNTYKYVKRGSK |
| Ga0181590_105798411 | 3300017967 | Salt Marsh | IDKLRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSNTYKYIKRGTK |
| Ga0181601_105405921 | 3300018041 | Salt Marsh | IESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGAK |
| Ga0181606_100085741 | 3300018048 | Salt Marsh | SMLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG |
| Ga0180433_108894424 | 3300018080 | Hypersaline Lake Sediment | YIGKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK |
| Ga0181563_101880965 | 3300018420 | Salt Marsh | TLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSNTYKYIKRGTK |
| Ga0181563_106976613 | 3300018420 | Salt Marsh | KLESMLNTLHETSDLWLSDVHNLSSLKWELIQMLDAEWDADSYRYIKRGSKNDKK |
| Ga0181592_111204633 | 3300018421 | Salt Marsh | NKIRSILNTIHETNDLWLSDVQNLSSLQYDLVNLLDAEWNPDKYTYIKRGEK |
| Ga0181591_106156601 | 3300018424 | Salt Marsh | SEYDDFFKYINKIRSILNTIHETNDLWLSDVQNLSSLQYDLVNLLYAEWNPDKYTYIKRGEK |
| Ga0181564_1002254414 | 3300018876 | Salt Marsh | EYDDLFKFINKLDNMLNTLHETNDLWLSDVQDLSSLRWELINLLNAEWDSKTYKYIKRGN |
| Ga0181564_104351385 | 3300018876 | Salt Marsh | LWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRSAK |
| Ga0194029_10463163 | 3300019751 | Freshwater | DTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGNK |
| Ga0181602_1000554114 | 3300020173 | Salt Marsh | MLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG |
| Ga0181602_100355428 | 3300020173 | Salt Marsh | LSDIHNLSSLKYELVELLDAEWSSDSYKYIKRGTK |
| Ga0181604_100260811 | 3300020191 | Salt Marsh | NDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKQGKG |
| Ga0181597_102127544 | 3300020194 | Salt Marsh | NDLWLSDVQNLHSLKWELVEMLDAEWNSNTYRYVKRGSK |
| Ga0213867_12874312 | 3300021335 | Seawater | LRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSYTYKYIKRGTK |
| Ga0213866_102271541 | 3300021425 | Seawater | HETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGGK |
| Ga0213866_105982051 | 3300021425 | Seawater | DSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYKYIKRGSK |
| Ga0212025_10670852 | 3300022057 | Aqueous | DALFKYINKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGTK |
| Ga0212024_10525221 | 3300022065 | Aqueous | RRMLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG |
| Ga0212028_10393964 | 3300022071 | Aqueous | LFKYIGKLDSMLNTLHETNDLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK |
| Ga0212028_10429674 | 3300022071 | Aqueous | NDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGTK |
| Ga0196897_10159031 | 3300022158 | Aqueous | TLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK |
| Ga0196897_10198271 | 3300022158 | Aqueous | SMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGTK |
| Ga0212020_10887662 | 3300022167 | Aqueous | EYDDLFKYINKLRSMLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG |
| Ga0196899_11741063 | 3300022187 | Aqueous | DLWLSDIHNLSSLKYELVELLDAEWNTDTYRYIKRGTK |
| Ga0255752_100132821 | 3300022929 | Salt Marsh | LRSMLNTLHETNDLWLSDVQNLHSLKWELVEMLDAEWNSNTYRYVKRGAK |
| (restricted) Ga0233432_1001160014 | 3300023109 | Seawater | DLWLSDVHNLSSLRWELTKLLDAEWNPETYRYVKRGNK |
| Ga0255751_101573537 | 3300023116 | Salt Marsh | KIRSILNTIHETNDLWLSDVQNLSSLQYDLVNLLDAEWSTDKYTYIKRGEKK |
| Ga0210003_11146645 | 3300024262 | Deep Subsurface | FKYIGKLEIMLNTLHETNDLWLSDVHNLSSLQSELVEMLDAEWSPNTYRYVKRGTK |
| Ga0208149_10363355 | 3300025610 | Aqueous | NKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGTK |
| Ga0209716_10221861 | 3300025626 | Pelagic Marine | FKYIGKLESMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Ga0208428_10228671 | 3300025653 | Aqueous | TLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGAK |
| Ga0208428_10489131 | 3300025653 | Aqueous | TNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Ga0208898_10043781 | 3300025671 | Aqueous | SMLNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYVKQGQG |
| Ga0209374_11487473 | 3300025705 | Marine | LDSILNTLHETSDLWLSDVHNLETFKYDLVRLLDAEWNSDTYKYIKRGSK |
| Ga0208427_12226732 | 3300025771 | Aqueous | ESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGTK |
| Ga0208427_12577652 | 3300025771 | Aqueous | MLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Ga0209603_10500837 | 3300025849 | Pelagic Marine | KLESMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Ga0209603_10975305 | 3300025849 | Pelagic Marine | KLESMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEWDSSTYRYVKRGNK |
| Ga0208645_12809882 | 3300025853 | Aqueous | KLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGTK |
| Ga0209666_12425261 | 3300025870 | Marine | SMLSTLHETNDLWLSDVHNLSSLKWELVEMLDAEYDSSTYRYVKRGSK |
| Ga0209534_101676565 | 3300025880 | Pelagic Marine | LHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGTK |
| Ga0208644_12480104 | 3300025889 | Aqueous | WLSDVQNLHSLKWELVEMLDAEWNPNTYKYVKRGTK |
| Ga0208644_12622624 | 3300025889 | Aqueous | NETNDLWLSDIHNLSGLKWELIQMLDAEWDADSYRYIKRGSKNDKK |
| Ga0208644_13116882 | 3300025889 | Aqueous | SMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Ga0208970_10734513 | 3300027298 | Marine | HETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSK |
| Ga0183755_100572915 | 3300029448 | Marine | LSDIHNLSSLKWELTEMLDAEWNPDTYRYVKRGSK |
| Ga0307380_1002121516 | 3300031539 | Soil | DLWLSDVHNLSSLQWELVEMLDAEWDSSTYRYVKRGNK |
| Ga0307378_101674217 | 3300031566 | Soil | LNTLHETNDLWLSDVHNLSSLQWELVEMLDAEWDSSTYRYVKRGNK |
| Ga0307378_111865404 | 3300031566 | Soil | LSTLHETNDLWLSDVHNLSSLQWELVEMLNAEWNPDTYRYVKRGTK |
| Ga0307378_114514543 | 3300031566 | Soil | DTLFKYINKLSNMLSTLHETNDLWLSDVHNLSSLQWELVEMLDAEWSPNTYRYVKRGAK |
| Ga0307984_10472396 | 3300031658 | Marine | TSDLWLSDVNNLGSLKYELVELLDAKWDSKTYRYVRGTK |
| Ga0307995_11023161 | 3300031696 | Marine | SMLNTLHETSDLWLSDVNNLGSLKYELVELLDAKWDSKSYRYVRGTK |
| Ga0316203_11738801 | 3300032274 | Microbial Mat | TLHETNDLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGAK |
| Ga0316204_109833701 | 3300032373 | Microbial Mat | LHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGEK |
| Ga0348335_167564_440_574 | 3300034374 | Aqueous | TLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGNK |
| Ga0348336_016576_3_137 | 3300034375 | Aqueous | LNTLHETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG |
| Ga0348337_111996_3_110 | 3300034418 | Aqueous | LSDVQNLHSLKWELVEMLDAEWNPNTYKYVKRGTK |
| Ga0348337_181406_2_121 | 3300034418 | Aqueous | ETNDLWLSDVHNLDSLQYDLVKLLDAKWDAGSYRYIKRG |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |