NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F067714

Metagenome / Metatranscriptome Family F067714

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F067714
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 39 residues
Representative Sequence MVKLALILLFGTAFAQGLAATSSQPPLLIEDTTAAHR
Number of Associated Samples 87
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 15.20 %
% of genes near scaffold ends (potentially truncated) 14.40 %
% of genes from short scaffolds (< 2000 bps) 80.00 %
Associated GOLD sequencing projects 79
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.200 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere
(11.200 % of family members)
Environment Ontology (ENVO) Unclassified
(47.200 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.800 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 32.31%    β-sheet: 0.00%    Coil/Unstructured: 67.69%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF00892EamA 41.60
PF04551GcpE 37.60
PF07077DUF1345 4.00
PF00893Multi_Drug_Res 2.40
PF00106adh_short 1.60
PF08937DUF1863 0.80
PF01145Band_7 0.80
PF07715Plug 0.80
PF13536EmrE 0.80
PF01425Amidase 0.80
PF13469Sulfotransfer_3 0.80
PF030614HBT 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG08214-hydroxy-3-methylbut-2-enyl diphosphate synthase IspG/GcpELipid transport and metabolism [I] 37.60
COG4291Uncharacterized membrane proteinFunction unknown [S] 4.00
COG2076Multidrug transporter EmrE and related cation transportersDefense mechanisms [V] 2.40
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.80


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.20 %
UnclassifiedrootN/A4.80 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886012|MBSR1b_contig_7400864All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis983Open in IMG/M
3300001205|C688J13580_1022151All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae773Open in IMG/M
3300001991|JGI24743J22301_10006287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.2018Open in IMG/M
3300001991|JGI24743J22301_10026661All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis1125Open in IMG/M
3300002075|JGI24738J21930_10058629All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.789Open in IMG/M
3300002568|C688J35102_120075266All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis869Open in IMG/M
3300002568|C688J35102_120963181All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00073319Open in IMG/M
3300003324|soilH2_10115656All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae1094Open in IMG/M
3300004153|Ga0063455_100146359Not Available1076Open in IMG/M
3300004479|Ga0062595_102289466All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-67-6532Open in IMG/M
3300005093|Ga0062594_100034832All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00072371Open in IMG/M
3300005163|Ga0066823_10001905All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2465Open in IMG/M
3300005175|Ga0066673_10722628All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis573Open in IMG/M
3300005179|Ga0066684_10148471All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1485Open in IMG/M
3300005184|Ga0066671_10754673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis625Open in IMG/M
3300005184|Ga0066671_10893877All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis563Open in IMG/M
3300005329|Ga0070683_101187562All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis733Open in IMG/M
3300005355|Ga0070671_100001037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD005720449Open in IMG/M
3300005356|Ga0070674_100151600All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1750Open in IMG/M
3300005434|Ga0070709_10075284All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00072189Open in IMG/M
3300005454|Ga0066687_10321658All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas881Open in IMG/M
3300005456|Ga0070678_100652976All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.944Open in IMG/M
3300005543|Ga0070672_100002691All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD005711370Open in IMG/M
3300005543|Ga0070672_100098993All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2362Open in IMG/M
3300005543|Ga0070672_100124307All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00572115Open in IMG/M
3300005543|Ga0070672_100126623All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2096Open in IMG/M
3300005543|Ga0070672_100336231All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae1285Open in IMG/M
3300005543|Ga0070672_101172639All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas684Open in IMG/M
3300005548|Ga0070665_100006014All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD005712406Open in IMG/M
3300005548|Ga0070665_101211372All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas766Open in IMG/M
3300005560|Ga0066670_10219848All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1146Open in IMG/M
3300005563|Ga0068855_100691030All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.1093Open in IMG/M
3300005563|Ga0068855_101535153All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas683Open in IMG/M
3300005564|Ga0070664_100649980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas980Open in IMG/M
3300005575|Ga0066702_10358215All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis887Open in IMG/M
3300005575|Ga0066702_10548433All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas699Open in IMG/M
3300005575|Ga0066702_10714748All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas597Open in IMG/M
3300005578|Ga0068854_100817336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas813Open in IMG/M
3300005616|Ga0068852_101999411All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas602Open in IMG/M
3300005616|Ga0068852_102121963All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.584Open in IMG/M
3300005985|Ga0081539_10008112All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00579275Open in IMG/M
3300006574|Ga0074056_11390514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.549Open in IMG/M
3300006581|Ga0074048_12883034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis675Open in IMG/M
3300006605|Ga0074057_10975193All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis550Open in IMG/M
3300006800|Ga0066660_10065670All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2439Open in IMG/M
3300006806|Ga0079220_10869427Not Available694Open in IMG/M
3300006881|Ga0068865_101159362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.683Open in IMG/M
3300006954|Ga0079219_10735342All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.759Open in IMG/M
3300006954|Ga0079219_10849340All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis728Open in IMG/M
3300009098|Ga0105245_10197928All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1928Open in IMG/M
3300009137|Ga0066709_102612204All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.676Open in IMG/M
3300009148|Ga0105243_10631520All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1035Open in IMG/M
3300009177|Ga0105248_10130775All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00072832Open in IMG/M
3300009177|Ga0105248_10411521All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1523Open in IMG/M
3300009551|Ga0105238_10861581Not Available923Open in IMG/M
3300012202|Ga0137363_10579707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas946Open in IMG/M
3300012957|Ga0164303_11145239All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-67-6565Open in IMG/M
3300012958|Ga0164299_10043684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2047Open in IMG/M
3300012958|Ga0164299_10064596All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1770Open in IMG/M
3300012958|Ga0164299_10353957Not Available925Open in IMG/M
3300012958|Ga0164299_10900503All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis642Open in IMG/M
3300012960|Ga0164301_10436707All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas927Open in IMG/M
3300012960|Ga0164301_10694606All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis765Open in IMG/M
3300012960|Ga0164301_11634688All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-67-6536Open in IMG/M
3300012961|Ga0164302_10634207All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas780Open in IMG/M
3300012986|Ga0164304_11209433All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis611Open in IMG/M
3300012987|Ga0164307_10285695All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1169Open in IMG/M
3300012987|Ga0164307_11763398All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis525Open in IMG/M
3300013100|Ga0157373_10104311All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1994Open in IMG/M
3300013102|Ga0157371_10938594All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-67-6657Open in IMG/M
3300013105|Ga0157369_10158475All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2390Open in IMG/M
3300014325|Ga0163163_10330474All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.1579Open in IMG/M
3300014497|Ga0182008_10815801All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas543Open in IMG/M
3300015371|Ga0132258_11813400All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1537Open in IMG/M
3300018431|Ga0066655_10901424All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas605Open in IMG/M
3300018433|Ga0066667_11239319All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis650Open in IMG/M
3300018433|Ga0066667_12065156All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis526Open in IMG/M
3300018468|Ga0066662_10127016All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1875Open in IMG/M
3300018468|Ga0066662_10507958All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00071100Open in IMG/M
3300018468|Ga0066662_11563544All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis687Open in IMG/M
3300018468|Ga0066662_12507067All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-67-6544Open in IMG/M
3300018482|Ga0066669_10427695All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae1130Open in IMG/M
3300021377|Ga0213874_10016127All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00071983Open in IMG/M
3300021445|Ga0182009_10377603All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas729Open in IMG/M
3300025315|Ga0207697_10010388All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00573981Open in IMG/M
3300025315|Ga0207697_10058645All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00071599Open in IMG/M
3300025321|Ga0207656_10026953All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00572347Open in IMG/M
3300025321|Ga0207656_10666765All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.532Open in IMG/M
3300025893|Ga0207682_10021220All Organisms → cellular organisms → Bacteria2554Open in IMG/M
3300025893|Ga0207682_10051196All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1710Open in IMG/M
3300025893|Ga0207682_10095241All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00071296Open in IMG/M
3300025899|Ga0207642_10106802All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1417Open in IMG/M
3300025899|Ga0207642_10734384Not Available624Open in IMG/M
3300025901|Ga0207688_10184710All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis1245Open in IMG/M
3300025901|Ga0207688_10926576Not Available551Open in IMG/M
3300025903|Ga0207680_10562148All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas815Open in IMG/M
3300025904|Ga0207647_10158177All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1322Open in IMG/M
3300025907|Ga0207645_10085999All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2019Open in IMG/M
3300025907|Ga0207645_10363766All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas969Open in IMG/M
3300025913|Ga0207695_10688808All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis903Open in IMG/M
3300025924|Ga0207694_11044743All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057691Open in IMG/M
3300025926|Ga0207659_10280564All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1362Open in IMG/M
3300025931|Ga0207644_10001236All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD005716423Open in IMG/M
3300025931|Ga0207644_10004563All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00579003Open in IMG/M
3300025931|Ga0207644_10960072All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis717Open in IMG/M
3300025932|Ga0207690_11560563All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas552Open in IMG/M
3300025937|Ga0207669_10373738All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1108Open in IMG/M
3300025949|Ga0207667_10923726All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → environmental samples → uncultured Sphingomonas sp.863Open in IMG/M
3300025986|Ga0207658_10497651All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis1085Open in IMG/M
3300026089|Ga0207648_11986188All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007543Open in IMG/M
3300026319|Ga0209647_1053997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas2139Open in IMG/M
3300026527|Ga0209059_1009709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas4346Open in IMG/M
3300027310|Ga0207983_1004331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00571538Open in IMG/M
3300028379|Ga0268266_12194669All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis524Open in IMG/M
3300028381|Ga0268264_10112977All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD00572382Open in IMG/M
3300031716|Ga0310813_10262586All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae1442Open in IMG/M
3300031901|Ga0307406_10866551All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas767Open in IMG/M
3300031938|Ga0308175_101381060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae785Open in IMG/M
3300031938|Ga0308175_101448565All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007767Open in IMG/M
3300031938|Ga0308175_101837047All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis679Open in IMG/M
3300031939|Ga0308174_10593535All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas916Open in IMG/M
3300031939|Ga0308174_10887205All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis752Open in IMG/M
3300031995|Ga0307409_100305478All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas1482Open in IMG/M
3300031996|Ga0308176_11770219All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae659Open in IMG/M
3300031996|Ga0308176_12668634All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → unclassified Caulobacterales → Caulobacterales bacterium 32-67-6532Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere11.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil8.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil8.00%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere8.00%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere7.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.80%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere4.80%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil4.00%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.20%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.40%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.40%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.60%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.60%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.60%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.80%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.80%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.80%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.80%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.80%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300001205Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300001991Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2Host-AssociatedOpen in IMG/M
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005163Soil and rhizosphere microbial communities from Laval, Canada - mgHMBEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006574Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006605Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300025315Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)Host-AssociatedOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300027310Soil and rhizosphere microbial communities from Laval, Canada - mgHMB (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0507.000019102162886012Miscanthus RhizosphereGAMVKLALILLFGTAFAQGLAATSSQPPLLIEDTTAAHR
C688J13580_102215123300001205SoilLSAQLGAVIKLALILFMGTAFAQGLAATSSEPPLLIQDTTAAPLDGAH*
JGI24743J22301_1000628713300001991Corn, Switchgrass And Miscanthus RhizosphereMVKLVLLLIMGTAFAQGIAATHQQPPLLVQDTTVAG
JGI24743J22301_1002666113300001991Corn, Switchgrass And Miscanthus RhizosphereKLALILFFGTAFAQGLAATSSQPPLLIEDTTAAHR*
JGI24738J21930_1005862923300002075Corn RhizosphereMVKLVLLLIMGTAFAQGIAATHXQPPLLXQDTTVAGR*
C688J35102_12007526623300002568SoilMVKLALILIMGAFAQGLAATSNQPPLLIQDTTAPLDAAR*
C688J35102_12096318153300002568SoilVIKLALILLMGTVFAQGLATNSQPPLLIQDTTAPLDGAH*
soilH2_1011565623300003324Sugarcane Root And Bulk SoilMVKLIVILIMGSAFAQGLALTDNQPPLLIQDTTAPLDGAH*
Ga0063455_10014635913300004153SoilVIKLALILFMGTAFAQGLAATSSEPPLLIQDTTAAPLDGA
Ga0062595_10228946613300004479SoilMIKLLLILTVGTAFAQGLASNASQRPLLIQDTTAPLDAAH*
Ga0062594_10003483223300005093SoilMIKLLLILTMGTAFAQELASNASQPPMLIQDTTAPLDAAH*
Ga0066823_1000190523300005163SoilMVKLALILILGAFAQGFAATSSQPPMLIQDTTAPLDGAR*
Ga0066673_1072262823300005175SoilMVKLALILIMGTAFAQGLAATASQPPLLIQDTTAPSLDGAR*
Ga0066684_1014847133300005179SoilMVKLALILIMGTAFAQGLSSANSQPPLLIQDTTAPSLDGAR*
Ga0066671_1075467313300005184SoilMVKLAMILIMGAFAQGLAATSNQPPLLIQDTTAPLDAAR*
Ga0066671_1089387723300005184SoilMVKLVLILIMGTAFAQGLAATNSQPPLLIEDTTAAPLDGGR*
Ga0070683_10118756213300005329Corn RhizosphereAGAHQCAMIKLLLILTMGTAFAQGLASNASQPPLLIQDTTAAPLDAAH*
Ga0070671_10000103773300005355Switchgrass RhizosphereMVKLALILIIGAFAQGLAATSSQRPMLIQDTTAPLDGAR*
Ga0070674_10015160023300005356Miscanthus RhizosphereMVKLALILILGAFAQGLAATSSQPPMLIQDTTAPLDDAR*
Ga0070709_1007528423300005434Corn, Switchgrass And Miscanthus RhizosphereMVKLALILLFGTAFAQGLSSANNPPPLLIQDTTAAPLDGGR*
Ga0066687_1032165823300005454SoilMVKLVLILIMGTAFAQGLAATSSPPPLLIQDTTAPLDGAG*
Ga0070678_10065297623300005456Miscanthus RhizosphereMIKLLLILTMGTAFAQGLASNASQPPLLIQDTTAAPLDAAH*
Ga0070672_10000269163300005543Miscanthus RhizosphereMVKLVLLLIMGTAFAQGIAATHQQPPLLVQDTTVAGR*
Ga0070672_10009899353300005543Miscanthus RhizosphereCAMVKLVLILLMGSAFAQGLASTNAQPPLLIEDTTAAHR*
Ga0070672_10012430723300005543Miscanthus RhizosphereMVKLALILLFGTAFAQGLAATSSQPPLLIEDTTAAHR*
Ga0070672_10012662323300005543Miscanthus RhizosphereMVKLALILFFGTAFAQGLAATSSQPPLLIEDTTAAHR*
Ga0070672_10033623133300005543Miscanthus RhizosphereMVKLVLILIMGAFAQGLAATSSQPPLLIEDTTAAHR*
Ga0070672_10117263923300005543Miscanthus RhizosphereMVKLALILILGAFAQGFAANSGQPPMLIQDTTAPLDGAR*
Ga0070665_10000601423300005548Switchgrass RhizosphereMVKLALILLFGTAFAQGLASTNAQPPLLIEDTTAAHR*
Ga0070665_10121137223300005548Switchgrass RhizosphereMVKLVLLLIMGTAFAQGIAATHQQPPLLIQDTTVAGR*
Ga0066670_1021984823300005560SoilMVKLALILLFGTAFAQGIAATASQPPLLIEDTTAAHR*
Ga0068855_10069103023300005563Corn RhizosphereMVKLALILFFGTAFAQGLAATNTQPPLLIEDTTAAYR*
Ga0068855_10153515323300005563Corn RhizosphereMVKLVLILLFGTAFAQGLAATASQPPLLIEDTTAAHR*
Ga0070664_10064998023300005564Corn RhizosphereMVKLALILLMGTAFAQGIAATSSQPPLLIQDTTASQR*
Ga0066702_1035821513300005575SoilMVKLVLILVMGTAFAQGLASTSSQPPLLIEDTTAAPLDAGR*
Ga0066702_1054843323300005575SoilMVKLALILLFGTAFAQGIAATTTQPPLLIEDTTAAHR*
Ga0066702_1071474823300005575SoilMVKLALILLFGTAFAQGLSAAGNQPPLLIQDTTAAPLDGAH*
Ga0068854_10081733623300005578Corn RhizosphereMVKLALILIMGTAFAQGISATSSQPPLLIQDTTASQR*
Ga0068852_10199941123300005616Corn RhizosphereMVKLAIILLMGSAFAHGLASTNSQPPLLIEDTTAAHR*
Ga0068852_10212196323300005616Corn RhizosphereMVKLIVILIMGSAFAQGLALTDSQPPLLIQDTTAAPLDGAH*
Ga0081539_1000811293300005985Tabebuia Heterophylla RhizosphereMVKLVLILIMGTAFAQGLAATHSQPPLLIEDTTAAPLDDAR*
Ga0074056_1139051423300006574SoilMVKLALILIMGTAFVQGLTAAASAPPLLIEDTTAAHR*
Ga0074048_1288303413300006581SoilQCAMIKLLLILTVGTAFAQGLASNASQRPLLIQDTTAPLDAAH*
Ga0074057_1097519313300006605SoilAHLRAMVKLALILIMGTAFVQGLTAAASAPPLLIEDTTAAHR*
Ga0066660_1006567033300006800SoilMLKLALLLIMGTAFAQGLAASASQPPLLIQDTTAPPLDAAG*
Ga0079220_1086942723300006806Agricultural SoilMVKLALILLMGTAFAQGLSSSSQPPLLIEDTTAAHR*
Ga0068865_10115936223300006881Miscanthus RhizosphereMVKLVLILLMGSAFAQGLASTNAQPPLLIEDTTAAHR*
Ga0079219_1073534223300006954Agricultural SoilMVKLVLILLMGTAFAQELSSSTTPPLLIQDTTAPLDGAR*
Ga0079219_1084934013300006954Agricultural SoilMVKLLLILLMGSAFAQGLSNSAQPPLLIQDTTAAQR*
Ga0105245_1019792833300009098Miscanthus RhizosphereMVKLAIILLFGTAFAQGFASTHKQPPLLIQDTTAAQR*
Ga0066709_10261220423300009137Grasslands SoilMVKLALILLFGTAFAQGLAVASQPPLLIQDTTAPLDGSR*
Ga0105243_1063152023300009148Miscanthus RhizosphereMVKLALILFFGTAFAQGLAATNTQPPLLIEDTTAAHR*
Ga0105248_1013077533300009177Switchgrass RhizosphereMVKLALILVLGAFAQGFAANSGQPPMLIQDTTAPLDGAR*
Ga0105248_1041152133300009177Switchgrass RhizosphereMVKLALILIIGAFAQGLAATSSQPPMLIQDTTAPLDGAR*
Ga0105238_1086158123300009551Corn RhizosphereMIKLVLILVTATAFAQGLASASSQPPLLVQDTTAH*
Ga0137363_1057970723300012202Vadose Zone SoilMVKLVLILIMGTAFAQGLAATSSPPPLLIQDTTAPLDGAR*
Ga0164303_1114523913300012957SoilMVKLVLILIMGTAFAQGIAATGNQPPLLIEDTTAAQR*
Ga0164299_1004368443300012958SoilVIKLALILFMGTAFAQGLASTSSEPPLLIQDTTVAPLDGAH*
Ga0164299_1006459633300012958SoilMIKLLRILTVGTAFAQGLASNASQRPLLIQDTTAPLDAAH*
Ga0164299_1035395713300012958SoilMVKLLLILIMGTAFAQGLSGSTQPPLLVQDTTAAPLDGAH*
Ga0164299_1090050313300012958SoilMVKLALILIIGAFAHGLAAISNQPTMLIQDTTAPLDGAR*
Ga0164301_1043670723300012960SoilMIKLALILIMGTSFAQGLAATTSQPPLLIQDTTAPLDGAR*
Ga0164301_1069460623300012960SoilAALHRAMVKLALILLFGTAFAQGIAATSSQPPLLIQDTSAAPLDAAR*
Ga0164301_1163468813300012960SoilMVKLLLILIMGTAFAQGLSGSTQPPLLIQDTTAAPLDGAH*
Ga0164302_1063420723300012961SoilVIKLALILFMGTAFAQGLASTSSEPPLLIQDTTAAPLDGAH*
Ga0164304_1120943323300012986SoilMIKLLLILTVGTAFAQGLASNASQPPMLIQDTTAPLDAAH*
Ga0164307_1028569523300012987SoilVIKLALILFMGTAFAQGLASTSSEPPLLIQDTTAEPLDGAH*
Ga0164307_1176339823300012987SoilMVKLLLILIMGTAFAQGLWGSTQPPLLIQDTTAAPLDGAH*
Ga0157373_1010431123300013100Corn RhizosphereMVKLALIVLMGTAFAQGLASTNNQPPLLIQDTTAAQR*
Ga0157371_1093859423300013102Corn RhizosphereMIKLLLILTVGTAFAQGLASNASQPPLLIQDTAAAPLDAAH*
Ga0157369_1015847523300013105Corn RhizosphereMIKLVLILVTATAFAQGLASASSQPPLLIQDTSGH*
Ga0163163_1033047413300014325Switchgrass RhizosphereMVKLVLLLIMGTAFAQGIAATHQQPPLLIQDTTVA
Ga0182008_1081580123300014497RhizosphereVIKLLLILVTGTAFAQGLASSSNQPPLLIQDTTAPLDGAH*
Ga0132258_1181340023300015371Arabidopsis RhizosphereMVKLALILIMGTAFAQGIAAADQQPPLLIQDTTAAQR*
Ga0066655_1090142423300018431Grasslands SoilMVKLALILLFGTAFAQGLSATSSQPPLLIEDTTAAPLDGAR
Ga0066667_1123931923300018433Grasslands SoilLVLILIMGTAFAQGLAATNSQPPLLIEDTTAAPLDGGR
Ga0066667_1206515623300018433Grasslands SoilMVKLALVLLFGTAFAQGLAAANSQPPLLIEDTTAAHG
Ga0066662_1012701623300018468Grasslands SoilMLKLALLLIMGTAFAQGLAASASQPPLLIQDTTAPPLDAAG
Ga0066662_1050795823300018468Grasslands SoilMVKLVLILVMGTAFAQGLASTSSQPPLLIEDTTAAPLDAGR
Ga0066662_1156354423300018468Grasslands SoilYAAHDGAMVKLALILLMGTAFAQGLAASKQPPLLIQDTTAAPLDAAR
Ga0066662_1250706713300018468Grasslands SoilMVKLVLILLFGTAFAQGLAATASPPPLLIQDTTAPLDGAR
Ga0066669_1042769523300018482Grasslands SoilMVKLALILIMGTAFAQGLSSANSQPPLLIQDTTAPSLDGAR
Ga0213874_1001612723300021377Plant RootsMVKLALILLMGTAFAQGIAATSSQPPLLIQDTTASQR
Ga0182009_1037760323300021445SoilMVKLVLLLIMGTAFAQGIAATHQQPPLLIQDTTVAGR
Ga0207697_1001038853300025315Corn, Switchgrass And Miscanthus RhizosphereMVKLALILLFGTAFAQGLAATSSQPPLLIEDTTAAHR
Ga0207697_1005864533300025315Corn, Switchgrass And Miscanthus RhizosphereRAHHCAMVKLALILLFGTAFAQGLASTNAQPPLLIEDTTAAHR
Ga0207656_1002695343300025321Corn RhizosphereMVKLVLILLFGTAFAQGLAATASQPPLLIEDTTAAHR
Ga0207656_1066676523300025321Corn RhizosphereMIKLVLILVTATAFAQGLASASSQPPLLVQDTTAH
Ga0207682_1002122023300025893Miscanthus RhizosphereMIKLLLILTMGTAFAQGLASNASQPPLLIQDTTAAPLDAAH
Ga0207682_1005119623300025893Miscanthus RhizosphereMVKLALILFFGTAFAQGLAATNTQPPLLIEDTTAAYR
Ga0207682_1009524123300025893Miscanthus RhizosphereMIKLLLILTMGTAFAQELASNASQPPMLIQDTTAPLDAAH
Ga0207642_1010680223300025899Miscanthus RhizosphereMVKLALILFFGTAFAQGLAATSSQPPLLIEDTTAAYR
Ga0207642_1073438423300025899Miscanthus RhizosphereMVKLVLILIMGAFAQGLAATSSQPPLLIEDTTAAHR
Ga0207688_1018471033300025901Corn, Switchgrass And Miscanthus RhizosphereMVKLALILFFGTAFAQGLAATSSQPPLLIEDTTAAHR
Ga0207688_1092657613300025901Corn, Switchgrass And Miscanthus RhizosphereMVKLALILLFGTAFAQGLASTNAQPPLLIEDTTAAHR
Ga0207680_1056214823300025903Switchgrass RhizosphereMVKLALILILGAFAQGFAANSGQPPMLIQDTTAPLDGAR
Ga0207647_1015817723300025904Corn RhizosphereMVKLALIVLMGTAFAQGLASTNNQPPLLIQDTTAAQR
Ga0207645_1008599943300025907Miscanthus RhizosphereMVKLALILFFGTAFAQGLAATNTQPPLLIEDTTAAHR
Ga0207645_1036376623300025907Miscanthus RhizosphereMVKLAIILLFGTAFAQGFASTHKQPPLLIQDTTAAQR
Ga0207695_1068880813300025913Corn RhizosphereRAHQCAMVKLVLLLIMGTAFAQGIAATHQQPPLLIQDTTVAGR
Ga0207694_1104474323300025924Corn RhizosphereMIKLVLILVAATAFAQGLASASSQPPLLIQDTTAH
Ga0207659_1028056423300025926Miscanthus RhizosphereMVKLVLILLMGSAFAQGLASTNAQPPLLIEDTTAAHR
Ga0207644_10001236143300025931Switchgrass RhizosphereMVKLALILIIGAFAQGLAATSSQRPMLIQDTTAPLDGAR
Ga0207644_1000456373300025931Switchgrass RhizosphereMIKLLLILTVGTAFAQGLASNASQRPLLIQDTTAPLDAAH
Ga0207644_1096007213300025931Switchgrass RhizosphereMVKLALILVLGAFAQGFAANSGQPPMLIQDTTAPLDGAR
Ga0207690_1156056323300025932Corn RhizosphereMVKLALILIMGTAFAQGISATSSQPPLLIQDTTASQR
Ga0207669_1037373823300025937Miscanthus RhizosphereMVKLALILILGAFAQGLAATSSQPPMLIQDTTAPLDDAR
Ga0207667_1092372623300025949Corn RhizosphereMVKLALILLFGTAFAQGLAATSSQHPLLIEDTTAAHR
Ga0207658_1049765123300025986Switchgrass RhizosphereHHGAMVKLALILLFGTAFAQGLAATSSQPPLLIEDTTAAHR
Ga0207648_1198618823300026089Miscanthus RhizosphereMIKLLLILTMGTAFAQGLASNASQRPLLIQDTTAPLDAAH
Ga0209647_105399743300026319Grasslands SoilMVKLALILLFGTAFAQGFAATASPPPLLIQDTTAAPLDGAR
Ga0209059_100970923300026527SoilMVKLALILLFGTAFAQGLSAAGNQPPLLIQDTTAAPLDGAH
Ga0207983_100433123300027310SoilMVKLALILILGAFAQGFAATSSQPPMLIQDTTAPLDGAR
Ga0268266_1219466923300028379Switchgrass RhizosphereCAMVKLALILILGAFAQGFAANSGQPPMLIQDTTAPLDGAR
Ga0268264_1011297753300028381Switchgrass RhizosphereHHCAMVKLALILLFGTAFAQGLASTNAQPPLLIEDTTAAHR
Ga0310813_1026258623300031716SoilMVKLALILIMGTAFAQGIAATNQQPPLLIQDTTAVQR
Ga0307406_1086655123300031901RhizosphereMAKLLLILLLGGAFADGLASTKERPPLLIEDTTAAALDAAG
Ga0308175_10138106023300031938SoilMVKLLLILLMGTAFAQGLEATSRQPPLLIQDTTAAPR
Ga0308175_10144856523300031938SoilMVKLVLILLFGTAFAQGLSAADSQPPLLIQDTTAAPLDGGR
Ga0308175_10183704723300031938SoilKLALILLFGTAFAQGLSSANDPPPLLIQDTTAAPLDGGR
Ga0308174_1059353523300031939SoilMVKLVLILLFGTAFAQGLSSANNQPPLLIQDTTAAPLDGGR
Ga0308174_1088720523300031939SoilMVKLALILLFGTAFAQGLSSANDPPPLLIQDTTAAPLDGGR
Ga0307409_10030547823300031995RhizosphereMAKLLLILLLGGAFADGLASTKEQPPLLIEDTTAAALDAAG
Ga0308176_1177021923300031996SoilMVKLVLILLMGTAFAQELSSSTPPPLLIQDTTTPLDGAH
Ga0308176_1266863423300031996SoilMVKLVLILLFGTAFAQGLSSANNPPPLLIQDTTAAPLDGGR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.