Metagenome / Metatranscriptome Family F067658

Basic Information
Family ID	F067658
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	51 residues
Representative Sequence	IRRARLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Number of Associated Samples	92
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	2.40 %
% of genes near scaffold ends (potentially truncated)	97.60 %
% of genes from short scaffolds (< 2000 bps)	88.80 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (64.800 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (31.200 % of family members)
Environment Ontology (ENVO)	Unclassified (72.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (76.800 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1JGI24218J26658_10150445 2Water_1035772 3JGI25908J49247_101385732 4JGI25910J50241_100440055 5JGI25910J50241_101779733 6JGI25911J50253_101449462 7Ga0007796_102022331 8Ga0068872_105328831 9Ga0049081_100347381 10Ga0049081_100998621 11Ga0049081_101598621 12Ga0049080_100556341 13Ga0049080_101502513 14Ga0049082_102506931 15Ga0074477_13582675 16Ga0075466_11109161 17Ga0075471_104203823 18Ga0105746_13074171 19Ga0108970_114386254 20Ga0114340_10241031 21Ga0114346_10370276 22Ga0114878_11609983 23Ga0104242_10687481 24Ga0102860_12375501 25Ga0114980_103513821 26Ga0114980_106597861 27Ga0114977_101074241 28Ga0114977_103175353 29Ga0114981_104263811 30Ga0114981_106057651 31Ga0114979_104037293 32Ga0114979_106947151 33Ga0114969_103041111 34Ga0114974_100591331 35Ga0114974_106082801 36Ga0114976_100201311 37Ga0114976_104168881 38Ga0114971_102705861 39Ga0114958_103660133 40Ga0114960_106064651 41Ga0136644_104469191 42Ga0133913_107547686 43Ga0133913_135187091 44Ga0153805_10155251 45Ga0181350_11560201 46Ga0181350_11560941 47Ga0181347_11350383 48Ga0181365_10275605 49Ga0181365_10419245 50Ga0181365_10962311 51Ga0181352_10942921 52Ga0181352_11695301 53Ga0181344_10926301 54Ga0181344_11237601 55Ga0181344_11788622 56Ga0181344_11800211 57Ga0181344_12344141 58Ga0181356_11500651 59Ga0181356_11846333 60Ga0181358_11623651 61Ga0181358_12776131 62Ga0181346_10154505 63Ga0181346_10978153 64Ga0181348_12157551 65Ga0181355_10791441 66Ga0181355_10822492 67Ga0181553_102608931 68Ga0181361_1171732 69Ga0181359_11300773 70Ga0207193_13722501 71Ga0207942_10283103 72Ga0194048_102345453 73Ga0181354_11018761 74Ga0181354_12269503 75Ga0228701_11260443 76Ga0228702_10953913 77Ga0255773_102668963 78Ga0208613_10639591 79Ga0208613_11385532 80Ga0208555_10195631 81Ga0209443_12611361 82Ga0209188_11709691 83Ga0209442_12352701 84Ga0209297_10869114 85Ga0209297_11601581 86Ga0209087_10106461 87Ga0209087_11246395 88Ga0209087_11910911 89Ga0209190_10690401 90Ga0209085_11939891 91Ga0209085_12302133 92Ga0209355_12766861 93Ga0209597_12546401 94Ga0209189_12442803 95Ga0209084_10088328 96Ga0209444_103279963 97Ga0209296_10455911 98Ga0209296_11924001 99Ga0209088_101305111 100Ga0209768_102028284 101Ga0209500_102351213 102Ga0209354_100592161 103Ga0209230_102572091 104Ga0209400_10324401 105Ga0209400_10391198 106Ga0209191_11877943 107Ga0209401_10255729 108Ga0247723_11166552 109Ga0315291_112704313 110Ga0315293_102150181 111Ga0315288_112951882 112Ga0315290_102977981 113Ga0315285_105042581 114Ga0315285_106818772 115Ga0315274_111958701 116Ga0315272_106250952 117Ga0315289_104685771 118Ga0315289_107457384 119Ga0315906_111892513 120Ga0315902_103104194 121Ga0315903_103069771 122Ga0334722_100205357 123Ga0334979_0586733_1_159 124Ga0335010_0560696_383_586 125Ga0335007_0167832_53_250
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. 1JGI24218J26658_10150445 2Water_1035772 3JGI25908J49247_101385732 4JGI25910J50241_101779733 5JGI25911J50253_101449462 6Ga0007796_102022331 7Ga0068872_105328831 8Ga0049081_100998621 9Ga0049080_100556341 10Ga0049080_101502513 11Ga0049082_102506931 12Ga0105746_13074171 13Ga0114878_11609983 14Ga0114980_103513821 15Ga0114977_101074241 16Ga0114981_106057651 17Ga0114974_106082801 18Ga0114971_102705861 19Ga0114958_103660133 20Ga0114960_106064651 21Ga0133913_135187091 22Ga0181358_11623651 23Ga0181348_12157551 24Ga0181355_10791441 25Ga0181553_102608931 26Ga0209188_11709691 27Ga0209297_11601581 28Ga0209087_11910911 29Ga0209190_10690401 30Ga0209084_10088328 31Ga0209400_10324401 32Ga0315285_106818772 33Ga0315289_107457384 34Ga0334979_0586733_1_159
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48. 1Ga0315291_112704313 2JGI24218J26658_10150445 3Ga0007796_102022331 4Ga0049081_100998621 5Ga0049080_101502513 6Ga0074477_13582675 7Ga0105746_13074171 8Ga0114878_11609983 9Ga0114977_101074241 10Ga0114977_103175353 11Ga0114979_106947151 12Ga0114974_100591331 13Ga0114976_100201311 14Ga0114971_102705861 15Ga0114958_103660133 16Ga0114960_106064651 17Ga0136644_104469191 18Ga0133913_107547686 19Ga0181365_10275605 20Ga0181344_10926301 21Ga0181344_11237601 22Ga0181344_11800211 23Ga0181344_12344141 24Ga0181356_11846333 25Ga0181346_10154505 26Ga0181355_10791441 27Ga0181355_10822492 28Ga0181553_102608931 29Ga0181361_1171732 30Ga0207193_13722501 31Ga0194048_102345453 32Ga0228701_11260443 33Ga0228702_10953913 34Ga0208613_10639591 35Ga0209188_11709691 36Ga0209087_10106461 37Ga0209190_10690401 38Ga0209296_10455911 39Ga0209296_11924001 40Ga0209768_102028284 41Ga0209500_102351213 42Ga0315285_106818772 43Ga0315274_111958701 44Ga0315903_103069771 45Ga0334979_0586733_1_159 46Ga0335007_0167832_53_250
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.44% β-sheet: 0.00% Coil/Unstructured: 41.56%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF11351	GTA_holin_3TM	16.80
PF08291	Peptidase_M15_3	12.00
PF00959	Phage_lysozyme	5.60
PF00182	Glyco_hydro_19	4.00
PF13640	2OG-FeII_Oxy_3	1.60
PF01957	NfeD	1.60

COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG3179	Chitinase, GH19 family	Carbohydrate transport and metabolism [G]	4.00
COG3979	Chitodextrinase	Carbohydrate transport and metabolism [G]	4.00

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.60 %
Unclassified	root	N/A	18.40 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	5.60 %
Unclassified	root	N/A	18.40 %
Viruses	superkingdom	All Organisms → Viruses	76.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.60 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	64.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.20 %
Unclassified	root	N/A	18.40 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	64.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
Unclassified	root	N/A	18.40 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
Unclassified	root	N/A	18.40 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	64.80 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	64.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
Unclassified	root	N/A	18.40 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	64.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
Unclassified	root	N/A	18.40 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.00 %
Unclassified	root	N/A	18.40 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	64.80 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002092\|JGI24218J26658_1015044	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1154	Open in IMG/M
3300002930\|Water_103577	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2516	Open in IMG/M
3300003277\|JGI25908J49247_10138573	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	571	Open in IMG/M
3300003388\|JGI25910J50241_10044005	All Organisms → Viruses → Predicted Viral	1427	Open in IMG/M
3300003388\|JGI25910J50241_10177973	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	543	Open in IMG/M
3300003411\|JGI25911J50253_10144946	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	685	Open in IMG/M
3300004804\|Ga0007796_10202233	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	584	Open in IMG/M
3300005528\|Ga0068872_10532883	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	628	Open in IMG/M
3300005581\|Ga0049081_10034738	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1916	Open in IMG/M
3300005581\|Ga0049081_10099862	All Organisms → Viruses → Predicted Viral	1082	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.20%
Host-Associated	Host-Associated	0.80%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.40%
Plants	Host-Associated → Plants	0.80%
Terrestrial	Environmental → Terrestrial	0.80%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.80%
Freshwater	Environmental → Aquatic → Freshwater	91.20%
Leaf	Host-Associated → Plants → Leaf	0.80%
Marine	Environmental → Aquatic → Marine	6.40%
Sediment	Environmental → Aquatic → Sediment	0.80%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	2.40%
Creek	Environmental → Aquatic → Freshwater → Creek	1.60%
Ice	Environmental → Aquatic → Freshwater → Ice	0.80%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.00%
Lake	Environmental → Aquatic → Freshwater → Lake	47.20%
Lentic	Environmental → Aquatic → Freshwater → Lentic	39.20%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.80%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.40%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.60%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	9.60%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	38.40%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	37.60%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.40%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	1.60%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.80%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.80%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.80%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.60%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.80%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.60%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.80%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.80%
Estuary Water	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water	0.80%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	2.40%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.40%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.40%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	1.60%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.80%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.80%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	31.20%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	29.60%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.80%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.80%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	4.80%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.60%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.80%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.60%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	8.80%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.80%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.80%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002092	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome	Environmental	Open in IMG/M
3300002930	Estuary water microbial communities from Pearl Estuary, Zhujiang, China	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003388	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN	Environmental	Open in IMG/M
3300003411	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD	Environmental	Open in IMG/M
3300004804	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M

Showing 1 to 10 of 92 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24218J26658_10150445	3300002092	Lentic	MIRRARLARWKKEQDEIQFVEFTSGVIAVMFISMFFGWLMWQLRALSGGY*
Water_1035772	3300002930	Estuary Water	MRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF*
JGI25908J49247_101385732	3300003277	Freshwater Lake	LLMYGKIEQEQKWARAEMIRRARLARWRKEEEEIRQIELISGGIAVTFISLIFGWLMWQLRVLSGGF*
JGI25910J50241_100440055	3300003388	Freshwater Lake	RLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF*
JGI25910J50241_101779733	3300003388	Freshwater Lake	ARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF*
JGI25911J50253_101449462	3300003411	Freshwater Lake	RKTRQARWKREQEEIRRIEMVSSAIAVTFISLFFGWAMWAIQNLSGGF*
Ga0007796_102022331	3300004804	Freshwater	EWAKSEMIRRARLARWRKEQEEIRFIELTSGVVAVVVISSFFGWIMWELRNLSGGY*
Ga0068872_105328831	3300005528	Freshwater Lake	KIEQEQEWARSEMIRRARIERWRQEQREIRQIEMISGLVAVGFISLIFGWLMWQLQNLSGGF*
Ga0049081_100347381	3300005581	Freshwater Lentic	EQQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF*
Ga0049081_100998621	3300005581	Freshwater Lentic	AKAEMMRRARLVRWQKEQQEIFFIEMVSAGVAIVFISMFFGWAMWQLRNLSSGY*
Ga0049081_101598621	3300005581	Freshwater Lentic	EIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF*
Ga0049080_100556341	3300005582	Freshwater Lentic	EIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF*
Ga0049080_101502513	3300005582	Freshwater Lentic	WKQEQEEIWFIEVTSGVVAVTFICLLFGWLMWQLRALSGGF*
Ga0049082_102506931	3300005584	Freshwater Lentic	AEMIRRARLARWRKEQEEIRHIEIISGGIAVTFISLIFGWLMWQLRVLSGGF*
Ga0074477_13582675	3300005826	Sediment (Intertidal)	SETIRRTRLARWKREQEEIRQIELISSAIAVTFISLIFGWLMWAIRNLSGGF*
Ga0075466_11109161	3300006029	Aqueous	ARTEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF*
Ga0075471_104203823	3300006641	Aqueous	QKEQEEIRAIELTSGVIAVVFVSLLFGWLMWQLRVLSDGF*
Ga0105746_13074171	3300007973	Estuary Water	AEMMRRARLVRWQKEQQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF*
Ga0108970_114386254	3300008055	Estuary	ARSETIRRTRLARWKKEQDEIRVIELTSGVIAVAFISLFFGWLMWEIRNLSGGF*
Ga0114340_10241031	3300008107	Freshwater, Plankton	KMYAKIEQEQEWARSEMIRRARIERWRQEQREIRQIEMISSLVAVGFISLIFGWLMWQLQNLSGGF*
Ga0114346_10370276	3300008113	Freshwater, Plankton	LARWQKEQDEIRAIETTTGVIAVMFISMLFGWLMWQLRALSGGF*
Ga0114878_11609983	3300008339	Freshwater Lake	RFLKMYAKIEQEQEWARSEMIRRARIERWRQEQREIRQIEITSGVIAVMFISLFFGWVMWQLRSWSTGY*
Ga0104242_10687481	3300008962	Freshwater	SEMIRRARLARWKKEQEEIQFVEFTSGVIAVMFISLLFGWLMWQLRALSGGF*
Ga0102860_12375501	3300009056	Estuarine	QQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF*
Ga0114980_103513821	3300009152	Freshwater Lake	KIEREQEWARSEMIRRARLARWKREQEEIRLIEFTSGIIAVMFVSLIFGWLMWQLHGLSDGF*
Ga0114980_106597861	3300009152	Freshwater Lake	EQIRMARLARWRKEQDEIRFIELTSGVVAVVFISSFFGWIMWELQNLSGGY*
Ga0114977_101074241	3300009158	Freshwater Lake	MHNRIEQEQAWARSEMIRRLRLARWKKEQEEIWLIELISGAIAVTFISIFFGWMMWQIRNLSGGF*
Ga0114977_103175353	3300009158	Freshwater Lake	LVMHGKIEREQEWARAEMIRRARLARWQKEQDEIQVIETISGVIAVMFISLFFGWFMWQLRSWSTGY*
Ga0114981_104263811	3300009160	Freshwater Lake	RNRLARWKQEQDEIRVIETISGVIAVMFISMFFGWLMWQLRALSGGF*
Ga0114981_106057651	3300009160	Freshwater Lake	MYARIQQEQEWARTEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRVLSGGF*
Ga0114979_104037293	3300009180	Freshwater Lake	QQEQEWARTEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF
Ga0114979_106947151	3300009180	Freshwater Lake	EREQEWARAEQIRRARLVRWRKEQEEIKFIELTSGVVAVTFISLFFGWIMWELQNLSGGY
Ga0114969_103041111	3300009181	Freshwater Lake	QDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF*
Ga0114974_100591331	3300009183	Freshwater Lake	RWKQEQNEIWLIEVTSGVIAVIFVSLIFGWLMWQLRDLSIGF*
Ga0114974_106082801	3300009183	Freshwater Lake	LARWKQEQDEIRVIETISGVIAVMFISMFFGWFMWQLRSWSTGY*
Ga0114976_100201311	3300009184	Freshwater Lake	QEWARSEMIRRARLARWKREQEEIRLIEFTSGIIAVMFVSLIFGWLMWQLHGLSDGF*
Ga0114976_104168881	3300009184	Freshwater Lake	KKEQEEIQFVEFTSGVIAVMFISLLFGWLMWQLRVLSDGF*
Ga0114971_102705861	3300009185	Freshwater Lake	EWARSEMIRRARLARWRREQEEIRRVEMTAGLISVMFISLIFGWLMWQLYDLSDGF*
Ga0114958_103660133	3300009684	Freshwater Lake	EEVKKLRQQRWKQEQDEIRFIEITSGVVAVMFISIFFGWLMWEIQNLSGGY*
Ga0114960_106064651	3300010158	Freshwater Lake	MHQKIEREQEWARAETIRRTRLARWKQEQEEIRVIELISGVIAVMFISMFFGWLMWQLRSWSTGY*
Ga0136644_104469191	3300010334	Freshwater Lake	RARRARWEKEQEEIRFIELISGVIAVAFISLLFGWLMWQLRVLSDGF*
Ga0133913_107547686	3300010885	Freshwater Lake	WARAEMIRRARLARWKKEQEEIRQIEMISGGVAVMFISLFFGWVMWQLRNLSGGY*
Ga0133913_135187091	3300010885	Freshwater Lake	EQDEIRTIETITGVIAVMFISMFFGWLMWQLRALSGGY*
Ga0153805_10155251	3300012013	Surface Ice	KIEQEQAWARSEMIRRARLARWRKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF*
Ga0181350_11560201	3300017716	Freshwater Lake	IEREQEWARAETIRRTRLARWKQEQEEIRFIELVSSGVAVVFISMFFGWVMWQLRNLSAG
Ga0181350_11560941	3300017716	Freshwater Lake	RARLARWKKEQEEIQFVEFTSGVIAVMFVSLLFGWLMWQLRVLSGGF
Ga0181347_11350383	3300017722	Freshwater Lake	EQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0181365_10275605	3300017736	Freshwater Lake	RAETIRKTRQARWKREQEEIRRIEMVSSAIAVTFISLIFGWLMWAIRNLSGGF
Ga0181365_10419245	3300017736	Freshwater Lake	QDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0181365_10962311	3300017736	Freshwater Lake	RSEMIRRARLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSVGF
Ga0181352_10942921	3300017747	Freshwater Lake	AKIEQEQEWARSEMIRRARIERWRQEQREIRQIEMVSGLVAVGFISLIFGWLMWQLQNLSGGF
Ga0181352_11695301	3300017747	Freshwater Lake	QEQEWARSEMIRRARIERWRQEQEEIRQIEMISGLVAVGFISLIFGWLMWQLQNLSGGF
Ga0181344_10926301	3300017754	Freshwater Lake	EREQEWARAEMIRRARQARWKQEQDEIRIIEITTGVIAVMFISLFFGWLMWQLRSWSTGY
Ga0181344_11237601	3300017754	Freshwater Lake	LARWKQEQNEIRWIELTSGVIAVMFVSLFFGWLMWQLRNLSGEY
Ga0181344_11788622	3300017754	Freshwater Lake	WARAEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWVMWQLRVLSGGF
Ga0181344_11800211	3300017754	Freshwater Lake	LIRRNRLARWQKEQDEIRVIETTTGVIAVMFISMFFGWFMWQLRALSGGY
Ga0181344_12344141	3300017754	Freshwater Lake	REQEWARAEMIRRARQARWKQEQDEIRVIEITTGVIAVMFISMFFGWLMWQLRSLSGGF
Ga0181356_11500651	3300017761	Freshwater Lake	AWARSEMIRRARLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0181356_11846333	3300017761	Freshwater Lake	QKIEREQEWARAETIRRTRLARWKQEQEEIRFIELVSSGVAVVFISLFFGWVMWQLRNLSTGY
Ga0181358_11623651	3300017774	Freshwater Lake	IEREQEWARTEMIRRTRLARWKKEQEEIWFIELVSSGVAVVFISLFFGWVMWQLRNLSTG
Ga0181358_12776131	3300017774	Freshwater Lake	LLRWQKEQEEIRAIELTSGVIAVVFISSLFGWVMWQLRVLSDGF
Ga0181346_10154505	3300017780	Freshwater Lake	RRARKARWEKEQEEIRFIELTSGVIAVMFISLFFGWLMWEIRNLSGGF
Ga0181346_10978153	3300017780	Freshwater Lake	VRWQKEQQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF
Ga0181348_12157551	3300017784	Freshwater Lake	RARKARWEKEQEEIRFIELTSGVIAVAFISLIFGWFMWQLRSWSTGY
Ga0181355_10791441	3300017785	Freshwater Lake	ARAEMIRRARLARWRKEQNEIRQIEMTTGAIAVMFISLFFGWFMWAIQNLSGGF
Ga0181355_10822492	3300017785	Freshwater Lake	MYGKIEQEQKWARAEMIRRARLARWRKEEEEIRQIELISGGIAVTFISLIFGWLMWQLRVLSGGF
Ga0181553_102608931	3300018416	Salt Marsh	RDEMLRKKRLARWRKERAEIFCIELTAGAIAVMFISLIFGWLMWQLRNLSGGF
Ga0181361_1171732	3300019783	Freshwater Lake	KKMRLLRWQKEQEEIRAIELTSGVIAVVFVSLLFGWLMWQLRVLSGGF
Ga0181359_11300773	3300019784	Freshwater Lake	WARAEMIRRARLARWRKEEEEIRQIELISGGIAVTFISLIFGWLMWQLRVLSGGF
Ga0207193_13722501	3300020048	Freshwater Lake Sediment	QQRWKQEQDEIRFIELTSGGIAVVFISLLFGWLMWQLRALSGGF
Ga0207942_10283103	3300020549	Freshwater	WARSEMIRRARIERWRQEQMEIRQIEMISGLVAVGFISLIFGWLMWQLQNLSGGF
Ga0194048_102345453	3300021519	Anoxic Zone Freshwater	EWARSEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF
Ga0181354_11018761	3300022190	Freshwater Lake	AEMIRRARLARWRKEQEEIRHIEMISGGIAVTFISLIFGWLMWQLRGLSGGF
Ga0181354_12269503	3300022190	Freshwater Lake	QEQAWARSEMIRRARLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0228701_11260443	3300022746	Freshwater	MYAKIEQEQEWARSEMIRKARLARWEKEKEEIRCIELTSGLIAVMFISLIFGWLMWQLHDLSGGF
Ga0228702_10953913	3300022748	Freshwater	REQEWARSEMIRKARLARWRKEQDEIQFIEFTSGVIAVMFVSLIFGWLMWQLRVLSGGF
Ga0255773_102668963	3300022925	Salt Marsh	DEMLRKKRLARWRKERAEIFCIELTAGAIAVMFISLIFGWLMWQLRNLSGGF
Ga0208613_10639591	3300025616	Freshwater	EQEWARSEMIRRARLARWKKEQEEIQFVEFTSGVIAVMFISLLFGWLMWQLRVLSDGF
Ga0208613_11385532	3300025616	Freshwater	WVREQDEIRVIEITTGVIAVMFISMIFGWLMWQLRALSGGF
Ga0208555_10195631	3300027213	Estuarine	IEREQEWARSETIRRTRLARWKREQEEIRQIELISSAIAVTFISLIFGWLMWAIRNLSGG
Ga0209443_12611361	3300027707	Freshwater Lake	ARSETIRRTRQARWKREQEEIRQIELISSAIAVTFISLIFGWLMWAIRNLSGGF
Ga0209188_11709691	3300027708	Freshwater Lake	LRMYARIQQEQEWARSEEVRKLRLQRWKQEQDEIRFIEITSGVIAVMFISTFFGWLMWEIQNLSGGF
Ga0209442_12352701	3300027732	Freshwater Lake	KKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0209297_10869114	3300027733	Freshwater Lake	LARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF
Ga0209297_11601581	3300027733	Freshwater Lake	KIEQEQAWARSETIRRNRLARWQKEQDEIRTIETITGVIAVMFISMFFGWLMWQLRALSGGF
Ga0209087_10106461	3300027734	Freshwater Lake	KELEEIRVIETITGVIAVMFISMVFGWLMWQLRALSGGY
Ga0209087_11246395	3300027734	Freshwater Lake	ARAEEVRKMRLARWQKEQEEIRAIELTSGVIGVVFISLLFGWLMWQLRALSGGF
Ga0209087_11910911	3300027734	Freshwater Lake	EQEEIQFVEFTSGVIAVMFISLLFGWLMWQLRVLSDGF
Ga0209190_10690401	3300027736	Freshwater Lake	RSEMVRRIRLLRWQKEQEEIRAIELTSGVIAVVFVSSLFGWLMWQLRVLSDGF
Ga0209085_11939891	3300027741	Freshwater Lake	WRKEQQEIRCIEITSGVIAVTFISLIFGWMMWQLRNLSGGF
Ga0209085_12302133	3300027741	Freshwater Lake	QEEIQFVEFTSGVIAVMFISLLFGWLMWQLRVLSDGF
Ga0209355_12766861	3300027744	Freshwater Lake	RRARWEKEQEEIRFIELISGVIAVAFISLLFGWLMWQLRVLSDGF
Ga0209597_12546401	3300027746	Freshwater Lake	VRRIRLLRWQKEQEEIRAIELTSGVIAVVFVSSLFGWLMWQLRVLSGGF
Ga0209189_12442803	3300027747	Freshwater Lake	LARWEKEQEEIRVIETISGVIAVMFISMFFGWLMWQLRSWSIGY
Ga0209084_10088328	3300027749	Freshwater Lake	LKMHAQIEREQEWARAEQIRMARLARWRKEQEEIKFIELTSGVVAVVFISSFFGWIMWELQNLSGGY
Ga0209444_103279963	3300027756	Freshwater Lake	IEREQEWARAEMIRRTRLARWKKEQEEIWFIELVSSGVAVVFISLFFGWVMWQLRNLSTG
Ga0209296_10455911	3300027759	Freshwater Lake	MHARIEQEQAWARSELIRRNRLARWKQEQDEIRVIETISGVIAVMFISMIFGWLMWQLRALSGGY
Ga0209296_11924001	3300027759	Freshwater Lake	VRRARQARWKKEQDEIRVIETISGVIAVAFISLIFGWFMWQLRSWSTGY
Ga0209088_101305111	3300027763	Freshwater Lake	QDEIRVIETISGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0209768_102028284	3300027772	Freshwater Lake	EMIRRARKARWEKEQKEIRFIELISGVIAVAFISLIFGWFMWQLRSWSSGY
Ga0209500_102351213	3300027782	Freshwater Lake	KIEQEQAWARSEMIRRARLARWRKEQQEIRCIEITSGVIAVTFISLIFGWMMWQLRNLSGGF
Ga0209354_100592161	3300027808	Freshwater Lake	RWRKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSVGF
Ga0209230_102572091	3300027836	Freshwater And Sediment	EQAWARAEMIRRARLARWRKEEEEIRHIEMISGGIAVTFISLIFGWLMWQLRGLSGGF
Ga0209400_10324401	3300027963	Freshwater Lake	REQEWARAEMIRRARMARWRKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0209400_10391198	3300027963	Freshwater Lake	KEQEEIRAIELTSGVVAVVFISLLFGWLMWQLRVLSGGF
Ga0209191_11877943	3300027969	Freshwater Lake	ARLARWKKEQEEIQFVEFTSGVIAVMFISLLFGWLMWQLRVLSDGF
Ga0209401_10255729	3300027971	Freshwater Lake	QEEIRAIELTSGVIAVVFVSLLFGWLMWQLRVLSGGF
Ga0247723_11166552	3300028025	Deep Subsurface Sediment	RKMRLARWQKEQEEIRAIELTSGVAGVVFISLLFGWLMWQLRALSGGF
Ga0315291_112704313	3300031707	Sediment	IRRARLARWKKEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0315293_102150181	3300031746	Sediment	EQDEIRVIELTSGVIAVAFISLIFGWLMWEIRNLSGGF
Ga0315288_112951882	3300031772	Sediment	EMMRRARLVRWQKEQQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF
Ga0315290_102977981	3300031834	Sediment	WKREQEEIRQIELISSAIAVTFISLIFGWLMWAIRNLSGGF
Ga0315285_105042581	3300031885	Sediment	WQKEQQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF
Ga0315285_106818772	3300031885	Sediment	LVMHGKIEREQEWARAETIRKARQARWQKEQEEIHRIEMVSSAIAVTFISLFFGWAMWAIRNLSGGF
Ga0315274_111958701	3300031999	Sediment	EWARSEMVRRARKARWEKEQEEIRFIELTSGVIAVTFISLIFGWLMWQLRSWSTGY
Ga0315272_106250952	3300032018	Sediment	LVRWQKEQQEIRVIELTSGVVAIVFISSFFGWLMWEIRNLSGGF
Ga0315289_104685771	3300032046	Sediment	AETIRKTRLARWKQEQDEIRVIELTSGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0315289_107457384	3300032046	Sediment	REQEEIRQIELISSAIAVTFISLIFGWLMWAIRNLSGGF
Ga0315906_111892513	3300032050	Freshwater	AKIEQEQEWARSEMIRRARIERWRQEQREIRQIEMISGLVAVGFISLIFGWLMWQLQNLSGGF
Ga0315902_103104194	3300032093	Freshwater	EQDEIRVIETISGVIAVMFISMFFGWLMWQLRALSGGF
Ga0315903_103069771	3300032116	Freshwater	LARWRKEQDEIQVIETISGVTAVMFISMFFGWLMWQLRSLSGGF
Ga0334722_100205357	3300033233	Sediment	LARWKKEQDEIRVIETISGVIAVTFISLFFGWLMWEIRNLSGGF
Ga0334979_0586733_1_159	3300033996	Freshwater	AEEVRKLRQQRWKQEQEEIWAIEVISGGIAVVFISLLFGWLMWQLRALLGGF
Ga0335010_0560696_383_586	3300034092	Freshwater	LKMYAKIEQEQEWARSEMIRRARIERWRQEQREIRQIEMISGLVAVGFISLIFGWLMWQLQNLSGGF
Ga0335007_0167832_53_250	3300034283	Freshwater	MYAKIEQEQEWARSEMIRRARIERWRQEQMEIRQIEMISGLVAVGFISLIFGWLMWQLQNLSGGF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067658

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences