Metagenome / Metatranscriptome Family F067595

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F067595
Family Type	Metagenome / Metatranscriptome
Number of Sequences	125
Average Sequence Length	48 residues
Representative Sequence	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Number of Associated Samples	90
Number of Associated Scaffolds	125

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.20 %
% of genes near scaffold ends (potentially truncated)	40.00 %
% of genes from short scaffolds (< 2000 bps)	87.20 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (67.200 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (38.400 % of family members)
Environment Ontology (ENVO)	Unclassified (71.200 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.200 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI25385J37094_102069502 2JGI25383J37093_101069022 3JGI25384J37096_101636111 4Ga0066674_100076374 5Ga0066674_100422041 6Ga0066674_102338091 7Ga0066674_103284701 8Ga0066677_107227381 9Ga0066680_101771023 10Ga0066673_103120521 11Ga0066673_103441411 12Ga0066679_107722951 13Ga0066690_103996992 14Ga0066690_109979641 15Ga0066688_101669901 16Ga0066688_109278591 17Ga0066678_101597883 18Ga0066678_108741651 19Ga0066678_110298012 20Ga0066676_103571212 21Ga0066676_108814652 22Ga0070708_1012993641 23Ga0066689_105336341 24Ga0066682_105855002 25Ga0066682_106184662 26Ga0070706_1007222292 27Ga0070707_1000438865 28Ga0070707_1004126093 29Ga0070707_1008245231 30Ga0066697_102085171 31Ga0066701_109563941 32Ga0066661_100787783 33Ga0066661_105978312 34Ga0066692_103431071 35Ga0066692_104041522 36Ga0066707_102842772 37Ga0066707_106599172 38Ga0066698_100874651 39Ga0066708_100025743 40Ga0066708_104434381 41Ga0066654_102096081 42Ga0066651_108128032 43Ga0066656_106606681 44Ga0066653_105404351 45Ga0066659_115867053 46Ga0075436_1011350661 47Ga0075435_1016260692 48Ga0099794_101608111 49Ga0066710_1010732372 50Ga0066710_1025178671 51Ga0066710_1026486611 52Ga0066710_1035304882 53Ga0066710_1036367292 54Ga0099829_101467702 55Ga0099828_105548411 56Ga0066709_1015419792 57Ga0127447_11014831 58Ga0134088_101351861 59Ga0134088_106203012 60Ga0134065_102273132 61Ga0134111_100038095 62Ga0134063_102340921 63Ga0134071_101579201 64Ga0137392_101056353 65Ga0137391_101833732 66Ga0137388_102129393 67Ga0137388_102344652 68Ga0137364_101342791 69Ga0137382_101636752 70Ga0137365_111306371 71Ga0137362_109598021 72Ga0137362_110084221 73Ga0137362_115214151 74Ga0137386_100814911 75Ga0134042_10591392 76Ga0134050_11941922 77Ga0137407_118423432 78Ga0134077_100645982 79Ga0134087_104044011 80Ga0134081_101296072 81Ga0134075_102521282 82Ga0137409_112074592 83Ga0134069_11771492 84Ga0134074_10790771 85Ga0134074_12502322 86Ga0134083_102557931 87Ga0134083_102580421 88Ga0066655_100068965 89Ga0066655_100150924 90Ga0066655_107792852 91Ga0066667_104017451 92Ga0066667_106359571 93Ga0066667_108632702 94Ga0066667_116648682 95Ga0066669_124281531 96Ga0210401_108297202 97Ga0210384_112397901 98Ga0207684_102884492 99Ga0207684_113768792 100Ga0207646_100975982 101Ga0209350_10250882 102Ga0209350_10574833 103Ga0209235_11900782 104Ga0209237_10232914 105Ga0209238_11735292 106Ga0209469_10141024 107Ga0209761_12980761 108Ga0209470_11219262 109Ga0209152_103944341 110Ga0209801_11229001 111Ga0209266_10017354 112Ga0209158_13595772 113Ga0209377_10252212 114Ga0209377_10800792 115Ga0209057_11844912 116Ga0209808_100019723 117Ga0209378_10569313 118Ga0209378_11846841 119Ga0209807_12808853 120Ga0209474_104987382 121Ga0179587_108197982 122Ga0209283_101166352 123Ga0307473_104802482 124Ga0307479_102921822 125Ga0307471_1004333731
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI25385J37094_102069502 2Ga0066690_109979641 3Ga0066688_101669901 4Ga0066698_100874651 5Ga0210401_108297202 6Ga0209378_11846841
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1JGI25385J37094_102069502 2Ga0066690_109979641 3Ga0066688_101669901 4Ga0066698_100874651 5Ga0210401_108297202 6Ga0209378_11846841
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.00% β-sheet: 24.00% Coil/Unstructured: 58.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 125 Family Scaffolds
PF01817	CM_2	25.60
PF03255	ACCA	10.40
PF01039	Carboxyl_trans	8.80
PF01842	ACT	8.00
PF01715	IPPT	4.80
PF14248	DUF4345	0.80
PF12911	OppC_N	0.80
PF08340	DUF1732	0.80
PF00155	Aminotran_1_2	0.80

Showing 1 to 9 of 9 entries

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COG ID	Name	Functional Category	% Frequency in 125 Family Scaffolds
COG1605	Chorismate mutase	Amino acid transport and metabolism [E]	25.60
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	19.20
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	8.80
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	8.80
COG0324	tRNA A37 N6-isopentenylltransferase MiaA	Translation, ribosomal structure and biogenesis [J]	4.80
COG1561	Endoribonuclease YloC, YicC family	Translation, ribosomal structure and biogenesis [J]	0.80

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.20 %
Unclassified	root	N/A	32.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.20 %
Unclassified	root	N/A	32.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.20 %
Unclassified	root	N/A	32.80 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.80 %
Unclassified	root	N/A	32.80 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.60 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %
bacterium HR30	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	1.60 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	42.40 %
Unclassified	root	N/A	32.80 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %
bacterium HR30	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	1.60 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	42.40 %
Unclassified	root	N/A	32.80 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %
bacterium HR30	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	1.60 %
Unclassified	root	N/A	32.80 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	28.80 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.80 %
bacterium HR30	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR30	1.60 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	28.80 %
Unclassified	root	N/A	32.80 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10206950	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300002560\|JGI25383J37093_10106902	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300002561\|JGI25384J37096_10163611	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	691	Open in IMG/M
3300005166\|Ga0066674_10007637	All Organisms → cellular organisms → Bacteria → Proteobacteria	4350	Open in IMG/M
3300005166\|Ga0066674_10042204	All Organisms → cellular organisms → Bacteria	2041	Open in IMG/M
3300005166\|Ga0066674_10233809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	873	Open in IMG/M
3300005166\|Ga0066674_10328470	Not Available	718	Open in IMG/M
3300005171\|Ga0066677_10722738	Not Available	556	Open in IMG/M
3300005174\|Ga0066680_10177102	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300005175\|Ga0066673_10312052	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	917	Open in IMG/M

Showing 1 to 10 of 125 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.40%
Host-Associated	Host-Associated	1.60%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	1.60%
Terrestrial	Environmental → Terrestrial	98.40%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.60%
Soil	Environmental → Terrestrial → Soil	98.40%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	8.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.60%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.40%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	56.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.40%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.60%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	18.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	14.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.40%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	38.40%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.40%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M

Showing 1 to 10 of 90 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_102069502	3300002558	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAA*
JGI25383J37093_101069022	3300002560	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPA
JGI25384J37096_101636111	3300002561	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTEPKPLRPAA*
Ga0066674_100076374	3300005166	Soil	MSVELASLAPLLWGLGGLVAAYVLTRDRHASSEGPIRIETTGPRPLRPAA*
Ga0066674_100422041	3300005166	Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0066674_102338091	3300005166	Soil	MNVELASLAPLVWGLGGLVAVLVLARDPHASSEGPTRIETTGPKPLRPAA*
Ga0066674_103284701	3300005166	Soil	MNVELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0066677_107227381	3300005171	Soil	MNVELASLAPLVWGLGGLVAVLVLARDPHASSEGPTRVETTGPKPLRPAA*
Ga0066680_101771023	3300005174	Soil	LAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0066673_103120521	3300005175	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0066673_103441411	3300005175	Soil	MNVELASLAPLLWGLGGLVAVLVLARDRHASSEGPTRVETTGPKPLRPAA*
Ga0066679_107722951	3300005176	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETPGPKPLRPAA*
Ga0066690_103996992	3300005177	Soil	MSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETTGPKPLRPAA*
Ga0066690_109979641	3300005177	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIET
Ga0066688_101669901	3300005178	Soil	APLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0066688_109278591	3300005178	Soil	MSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETTGPPLRPAA*
Ga0066678_101597883	3300005181	Soil	KEGDTMNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0066678_108741651	3300005181	Soil	MNVELAMLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTEPKPLRPAA*
Ga0066678_110298012	3300005181	Soil	MNVELASLAPLLWGLGGLVAVLVLARDPHASSEGPTRIETTGPKPLRPAA*
Ga0066676_103571212	3300005186	Soil	MNVELLVLAPLVWGLCGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0066676_108814652	3300005186	Soil	MNVELAMLAPLVWGLGGLVAVLVLVRDRHASSEGPFRIETTGPKPLRPAA*
Ga0070708_1012993641	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	DTMNVELAMLAPLVWGFGGLIAVLVLVRDRHASSEGPIRIETAKPLRPAA*
Ga0066689_105336341	3300005447	Soil	MNVELASLAPLVWGLGGLVAVLVLVRDRHASREGPIRTETTGPKPLRPAA*
Ga0066682_105855002	3300005450	Soil	MNVELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPL
Ga0066682_106184662	3300005450	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPL
Ga0070706_1007222292	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNVELAMLAPLVWGLAGLIAVLVLVRDRHSSSEGPIRIETGATRPLRPAA*
Ga0070707_1000438865	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MNVELAMLAPLVWGFGGLIAVLVLVRDRHASSEGPIRIETAKPLRPAA*
Ga0070707_1004126093	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MNVELASLAPLVWGLGGLVAMLFLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0070707_1008245231	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MNVEFAVLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAA*
Ga0066697_102085171	3300005540	Soil	MSVELASLAPLLWGLGGLVAAYVLTRDRHASSEGPIRIETTGP
Ga0066701_109563941	3300005552	Soil	MSVELASLAPLLWSLGGLVAVYVLTRDRHASSEGPIRIETTGPPLRPAA*
Ga0066661_100787783	3300005554	Soil	MNVELALVAPLVWGLGGLVAVLVLVRDRHASWKGPIRIETTGPKPL
Ga0066661_105978312	3300005554	Soil	WKEGDTMNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0066692_103431071	3300005555	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPLRIETTGPKPLRPAA*
Ga0066692_104041522	3300005555	Soil	MNVELALVAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTEPKPLRPAA*
Ga0066707_102842772	3300005556	Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASSEGPIRIETGAPKPLRPAA*
Ga0066707_106599172	3300005556	Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPTRIETTGPKPLRPAA*
Ga0066698_100874651	3300005558	Soil	GLVAAYVLTRDRHASSEGPIRIETTGPRPLRPAA*
Ga0066708_100025743	3300005576	Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASLEGPVRIETTPPEPLRPAA*
Ga0066708_104434381	3300005576	Soil	MSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETTGP
Ga0066654_102096081	3300005587	Soil	APLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0066651_108128032	3300006031	Soil	LAPLVWGLGGLVAVLVLVRDRHASSEGPIRIETGAPKPLRPAA*
Ga0066656_106606681	3300006034	Soil	MNVELALLAPLVWALGGLVAVLVLARDPHASSEGPIRIET
Ga0066653_105404351	3300006791	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRI
Ga0066659_115867053	3300006797	Soil	RWKEGDTMNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETPGPKPLRPAA*
Ga0075436_1011350661	3300006914	Populus Rhizosphere	LAPLVWGLGGLVALLVLVRDRHAASERPVRIEVTRPVRPAA*
Ga0075435_1016260692	3300007076	Populus Rhizosphere	MNVDLAMLAPLVWGLGGLVALLVLVRDRHAASEGPVRIEVTRPVRPAA*
Ga0099794_101608111	3300007265	Vadose Zone Soil	MNVEFALLAPLVWGLGGLVAVLLLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0066710_1010732372	3300009012	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETPGPKPLRPAA
Ga0066710_1025178671	3300009012	Grasslands Soil	MNVELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLR
Ga0066710_1026486611	3300009012	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLR
Ga0066710_1035304882	3300009012	Grasslands Soil	MNVELALLAPLVWALGGLVAVLLLARDRHASAEGPIRIEVTAPKPLRPAA
Ga0066710_1036367292	3300009012	Grasslands Soil	MNVELALLAPLVWALGGLVALLLLARDRHASAEGPIRIEVTAPKPLRPAA
Ga0099829_101467702	3300009038	Vadose Zone Soil	MNVELAVLAPLVWGLCGLVAVLVLARDPHASSEGPIRIETRAHRPLRPAA*
Ga0099828_105548411	3300009089	Vadose Zone Soil	MNVEVAMLAPLVWGLAGLIAVLVLVRDRHSSSEGPIRIDTGAARPLRPAA*
Ga0066709_1015419792	3300009137	Grasslands Soil	MNVELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPEPLRPAA*
Ga0127447_11014831	3300010136	Grasslands Soil	WGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0134088_101351861	3300010304	Grasslands Soil	NVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0134088_106203012	3300010304	Grasslands Soil	MNVELLAMLAPLVWGLGGLVAVLVLVRDRHASSEGPFRIETTGSKPLRPAA*
Ga0134065_102273132	3300010326	Grasslands Soil	LAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0134111_100038095	3300010329	Grasslands Soil	GGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0134063_102340921	3300010335	Grasslands Soil	MNVELAVLAPLVWGLGGLVAVLLLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0134071_101579201	3300010336	Grasslands Soil	AMLAPLVWGLGGLVAVLVLVRDRHASSEGPFRIETTGSKPLRPAA*
Ga0137392_101056353	3300011269	Vadose Zone Soil	MNVELALLAPLVWGLGGRGAVLDLARDPHASSEGPIRIETRAHKPLRPAA*
Ga0137391_101833732	3300011270	Vadose Zone Soil	MNVELALLAPLVWALGGLVAVLVLARDPHASSEGPIRIEASAPKPLRPAA*
Ga0137388_102129393	3300012189	Vadose Zone Soil	MNVEVAMLAPLVWGLAGLIAVLVLVRDRHPSSEGPIRIDTGAARPLRPAA*
Ga0137388_102344652	3300012189	Vadose Zone Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASGEGPIRIETTGPKPLRPAA*
Ga0137364_101342791	3300012198	Vadose Zone Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPEPLRPAA*
Ga0137382_101636752	3300012200	Vadose Zone Soil	MNVELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIWIETTGPKPLRPAA*
Ga0137365_111306371	3300012201	Vadose Zone Soil	MNVELAVLAPLVWGLGGLVAVLLLARDPHASSEGPIRI
Ga0137362_109598021	3300012205	Vadose Zone Soil	TMNVEFALLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0137362_110084221	3300012205	Vadose Zone Soil	MNVELALLAPLVWGLGGLVAVLLLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0137362_115214151	3300012205	Vadose Zone Soil	VWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAA*
Ga0137386_100814911	3300012351	Vadose Zone Soil	LAVLAPLVWGLGGLVAVLLLARDPHASSEGPIRIETTGPKPLRPAA*
Ga0134042_10591392	3300012373	Grasslands Soil	VWGLGGIVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0134050_11941922	3300012407	Grasslands Soil	DTMNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA*
Ga0137407_118423432	3300012930	Vadose Zone Soil	ALESWKEGDTMNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAA
Ga0134077_100645982	3300012972	Grasslands Soil	MNVELAMLAPLVWGLGGLVAVLVLVRDRHASSEGPFRIETTGSKPLRPAA*
Ga0134087_104044011	3300012977	Grasslands Soil	MSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETT
Ga0134081_101296072	3300014150	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETT
Ga0134075_102521282	3300014154	Grasslands Soil	MNVELLAMLAPLVWGLGGLVAVLVLVRDRHASSEGPVRIETTPPEPLRPAA*
Ga0137409_112074592	3300015245	Vadose Zone Soil	EGDTMNVELAVLAPLVWGLGGLVAVLLIARAPHASSEGPIRIETTGPKPLRPAA*
Ga0134069_11771492	3300017654	Grasslands Soil	VELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0134074_10790771	3300017657	Grasslands Soil	LAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA
Ga0134074_12502322	3300017657	Grasslands Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPL
Ga0134083_102557931	3300017659	Grasslands Soil	NVELASLAPLLWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0134083_102580421	3300017659	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETRAHKPLRPAA
Ga0066655_100068965	3300018431	Grasslands Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA
Ga0066655_100150924	3300018431	Grasslands Soil	MSVELASLAPLLWGLGGLVAAYVLTRDRHASSEGPIRIETTGPPLRPAA
Ga0066655_107792852	3300018431	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0066667_104017451	3300018433	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASSEGPIRIETGAPKPLRPAA
Ga0066667_106359571	3300018433	Grasslands Soil	APLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0066667_108632702	3300018433	Grasslands Soil	MSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETTGPPLRPAA
Ga0066667_116648682	3300018433	Grasslands Soil	MNVELASLAPLVWGLGGLVAVLVLARDPHASSEGPTRIETTGPKPLRPAA
Ga0066669_124281531	3300018482	Grasslands Soil	MNVELASLAPLLWGLGGLVAVLVLARDRHASSEGPTRVETTGPKPLRPAA
Ga0210401_108297202	3300020583	Soil	MSVIELAMLAPLAWGLGGLVAVFVLTRDRDASAEGPIRIEATRPLRPVA
Ga0210384_112397901	3300021432	Soil	MNVIELAMLAPLAWGLGGLVAVFVLTRDRDASAEGPIRIEATRP
Ga0207684_102884492	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNVELAMLAPLVWGLAGLIAVLVLVRDRHSSSEGPIRIETGATRPLRPAA
Ga0207684_113768792	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNVELAMLAPLVWGFGGLIAVLVLVRDRHASSEGPIRIETAKPLRPAA
Ga0207646_100975982	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNVELASLAPLVWGLGGLVAMLFLARDRHASSEGPVRIETTPPEPLRPAA
Ga0209350_10250882	3300026277	Grasslands Soil	MNVELASLAPLLWGLGGLVAVLVLARDPHASSEGPTRVETTGPKPLRPAA
Ga0209350_10574833	3300026277	Grasslands Soil	VELASLAPLVWGLGGLVAVLVLARDRHASSEGPVRIETTPPEPLRPAA
Ga0209235_11900782	3300026296	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAA
Ga0209237_10232914	3300026297	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTEPKPLRPAA
Ga0209238_11735292	3300026301	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHVSWEGPIRIETTGPKPLRPAA
Ga0209469_10141024	3300026307	Soil	MNVELAVLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0209761_12980761	3300026313	Grasslands Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPLR
Ga0209470_11219262	3300026324	Soil	MNVELAMLAPLVWGLGGLVAVLVLVRDRHASSEGPFRIETTGPKPLRPAA
Ga0209152_103944341	3300026325	Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPV
Ga0209801_11229001	3300026326	Soil	WKEGDTMNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0209266_10017354	3300026327	Soil	MSVELASLAPLLWGLGGLVAAYVLTRDRHASSEGPIRIETTGPRPLRPAA
Ga0209158_13595772	3300026333	Soil	MSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETPGPKPLRPAA
Ga0209377_10252212	3300026334	Soil	MNVELALVAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTEPKPLRPAA
Ga0209377_10800792	3300026334	Soil	MNVELALLAPLVWGLGGLVAVLVLARDPHASSEGPLRIETTGPKPLRPAA
Ga0209057_11844912	3300026342	Soil	MNVELASLAPLVWGLGGLVAVLVLVRDRHASREGPIRTETTGPKPLRPAA
Ga0209808_100019723	3300026523	Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASLEGPVRIETTPPEPLRPAA
Ga0209378_10569313	3300026528	Soil	MNVELASLAPLVWGLGGLVAVLVLARDRHASSEGPTRIETTGPKPLRPAA
Ga0209378_11846841	3300026528	Soil	IVPGSGKEGDTMSVELASLAPLLWALGGLVAVYVLTRDRHASSEGPIRIETTGPPLRPAA
Ga0209807_12808853	3300026530	Soil	LGGLVAVLVLVRDRHASWEGPIRIETTEPKPLRPAA
Ga0209474_104987382	3300026550	Soil	MSVELASLAPLLWALGGLVAIYVLTRDRHASSEGPIRIETTGPPLRPAA
Ga0179587_108197982	3300026557	Vadose Zone Soil	MNVELALLAPLVWGLGGLVVVLVLVRDRHASWEGPIRIETTGPKPLRPAA
Ga0209283_101166352	3300027875	Vadose Zone Soil	MNVELAVLAPLVWGLCGLVAVLVLARDPHASSEGPIRIETRAHRPLRPAA
Ga0307473_104802482	3300031820	Hardwood Forest Soil	MNVEPPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAA
Ga0307479_102921822	3300031962	Hardwood Forest Soil	MNEIELAALAPLVWALGGLVAVLVLARDPHASSEGPIRIETTGPKPLRPAA
Ga0307471_1004333731	3300032180	Hardwood Forest Soil	MNVELALLAPLVWGLGGLVAVLVLVRDRHASWEGPIRIETTGPKPLRPAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067595

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences