NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F067505

Metagenome Family F067505

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F067505
Family Type Metagenome
Number of Sequences 125
Average Sequence Length 71 residues
Representative Sequence MARTAVTPSPGFISIAVSDVERSAAFYVEHLGAIRDTFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPD
Number of Associated Samples 110
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.56 %
% of genes near scaffold ends (potentially truncated) 96.00 %
% of genes from short scaffolds (< 2000 bps) 89.60 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.800 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(19.200 % of family members)
Environment Ontology (ENVO) Unclassified
(25.600 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.400 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.56%    β-sheet: 6.19%    Coil/Unstructured: 75.26%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF12680SnoaL_2 22.40
PF01243Putative_PNPOx 5.60
PF02900LigB 4.00
PF08281Sigma70_r4_2 3.20
PF08327AHSA1 2.40
PF04542Sigma70_r2 1.60
PF02735Ku 1.60
PF00561Abhydrolase_1 0.80
PF03358FMN_red 0.80
PF09948DUF2182 0.80
PF01545Cation_efflux 0.80
PF02894GFO_IDH_MocA_C 0.80
PF01047MarR 0.80
PF02678Pirin 0.80
PF12681Glyoxalase_2 0.80
PF02517Rce1-like 0.80
PF00285Citrate_synt 0.80
PF07995GSDH 0.80
PF01408GFO_IDH_MocA 0.80
PF00144Beta-lactamase 0.80
PF08450SGL 0.80
PF02566OsmC 0.80
PF00581Rhodanese 0.80
PF00196GerE 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 1.60
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.60
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 1.60
COG1273Non-homologous end joining protein Ku, dsDNA break repairReplication, recombination and repair [L] 1.60
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 1.60
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.80
COG4449Predicted protease, Abi (CAAX) familyGeneral function prediction only [R] 0.80
COG3965Predicted Co/Zn/Cd cation transporter, cation efflux familyInorganic ion transport and metabolism [P] 0.80
COG3391DNA-binding beta-propeller fold protein YncEGeneral function prediction only [R] 0.80
COG3386Sugar lactone lactonase YvrECarbohydrate transport and metabolism [G] 0.80
COG2367Beta-lactamase class ADefense mechanisms [V] 0.80
COG2133Glucose/arabinose dehydrogenase, beta-propeller foldCarbohydrate transport and metabolism [G] 0.80
COG1765Uncharacterized OsmC-related proteinGeneral function prediction only [R] 0.80
COG1764Organic hydroperoxide reductase OsmC/OhrADefense mechanisms [V] 0.80
COG1741Redox-sensitive bicupin YhaK, pirin superfamilyGeneral function prediction only [R] 0.80
COG0053Divalent metal cation (Fe/Co/Zn/Cd) efflux pumpInorganic ion transport and metabolism [P] 0.80
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.80
COG1266Membrane protease YdiL, CAAX protease familyPosttranslational modification, protein turnover, chaperones [O] 0.80
COG1230Co/Zn/Cd efflux system componentInorganic ion transport and metabolism [P] 0.80
COG0673Predicted dehydrogenaseGeneral function prediction only [R] 0.80
COG0372Citrate synthaseEnergy production and conversion [C] 0.80

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.80 %
UnclassifiedrootN/A3.20 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c2395230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia937Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105802759All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia786Open in IMG/M
3300000891|JGI10214J12806_10438387All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300000956|JGI10216J12902_111354326All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300001537|A2065W1_10404991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi804Open in IMG/M
3300001991|JGI24743J22301_10130429All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300002239|JGI24034J26672_10119709All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300002908|JGI25382J43887_10075451All Organisms → cellular organisms → Bacteria1819Open in IMG/M
3300004081|Ga0063454_100371966All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300004479|Ga0062595_101804947All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300004480|Ga0062592_102670823All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300004643|Ga0062591_100727114All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300005093|Ga0062594_101516340All Organisms → cellular organisms → Bacteria689Open in IMG/M
3300005174|Ga0066680_10741736All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300005175|Ga0066673_10015956All Organisms → cellular organisms → Bacteria3354Open in IMG/M
3300005176|Ga0066679_10289328All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300005177|Ga0066690_10096045All Organisms → cellular organisms → Bacteria1897Open in IMG/M
3300005178|Ga0066688_10140771All Organisms → cellular organisms → Bacteria1505Open in IMG/M
3300005178|Ga0066688_11022964All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300005186|Ga0066676_10061679All Organisms → cellular organisms → Bacteria2170Open in IMG/M
3300005328|Ga0070676_10551861All Organisms → cellular organisms → Bacteria825Open in IMG/M
3300005336|Ga0070680_100217844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1611Open in IMG/M
3300005338|Ga0068868_100168398All Organisms → cellular organisms → Bacteria1813Open in IMG/M
3300005339|Ga0070660_100252926All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1437Open in IMG/M
3300005353|Ga0070669_100940840All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300005435|Ga0070714_101277792All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300005440|Ga0070705_101306263All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300005441|Ga0070700_101976432All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300005445|Ga0070708_100076056All Organisms → cellular organisms → Bacteria3031Open in IMG/M
3300005445|Ga0070708_100139634All Organisms → cellular organisms → Bacteria2246Open in IMG/M
3300005467|Ga0070706_100564462All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300005471|Ga0070698_100754569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia916Open in IMG/M
3300005518|Ga0070699_100766610All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300005518|Ga0070699_101330529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia659Open in IMG/M
3300005535|Ga0070684_101688455All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300005536|Ga0070697_100087159All Organisms → cellular organisms → Bacteria2577Open in IMG/M
3300005546|Ga0070696_100118161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1917Open in IMG/M
3300005546|Ga0070696_100505788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia962Open in IMG/M
3300005555|Ga0066692_10123507All Organisms → cellular organisms → Bacteria1564Open in IMG/M
3300005556|Ga0066707_10764375All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300005557|Ga0066704_10351176All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300005558|Ga0066698_10658355All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300005559|Ga0066700_10340973All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300005561|Ga0066699_10956780All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300005719|Ga0068861_100399367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1219Open in IMG/M
3300005841|Ga0068863_100073838All Organisms → cellular organisms → Bacteria3227Open in IMG/M
3300006034|Ga0066656_10066549All Organisms → cellular organisms → Bacteria2118Open in IMG/M
3300006034|Ga0066656_10553139All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300006046|Ga0066652_100161033All Organisms → cellular organisms → Bacteria1892Open in IMG/M
3300006046|Ga0066652_101844079All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300006806|Ga0079220_11891339All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia529Open in IMG/M
3300006871|Ga0075434_100527743All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1201Open in IMG/M
3300006904|Ga0075424_100025708All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6062Open in IMG/M
3300007076|Ga0075435_101472564All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria597Open in IMG/M
3300009012|Ga0066710_100208604All Organisms → cellular organisms → Bacteria2789Open in IMG/M
3300009012|Ga0066710_101626351All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300009012|Ga0066710_103953450All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300009148|Ga0105243_11923865All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300009148|Ga0105243_12294670All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300009176|Ga0105242_10765484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium952Open in IMG/M
3300009176|Ga0105242_11420549All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300010304|Ga0134088_10500659All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300010400|Ga0134122_13372723All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300010401|Ga0134121_12143849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium595Open in IMG/M
3300010401|Ga0134121_12691404All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300011119|Ga0105246_11348821All Organisms → cellular organisms → Bacteria663Open in IMG/M
3300012014|Ga0120159_1027042All Organisms → cellular organisms → Bacteria2024Open in IMG/M
3300012189|Ga0137388_11627592All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300012211|Ga0137377_10081312All Organisms → cellular organisms → Bacteria3049Open in IMG/M
3300012360|Ga0137375_11259397All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300012360|Ga0137375_11261362All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300012684|Ga0136614_10763373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria677Open in IMG/M
3300012899|Ga0157299_10360214Not Available502Open in IMG/M
3300012927|Ga0137416_10672316All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300012957|Ga0164303_10289773All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria959Open in IMG/M
3300012960|Ga0164301_11389679All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300012960|Ga0164301_11680991All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300012986|Ga0164304_10616088All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300015356|Ga0134073_10247499All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300015358|Ga0134089_10381127All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300015371|Ga0132258_13339749All Organisms → cellular organisms → Bacteria1103Open in IMG/M
3300015372|Ga0132256_102195991All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300015374|Ga0132255_102399930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales805Open in IMG/M
3300015374|Ga0132255_103925294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium631Open in IMG/M
3300017657|Ga0134074_1116717All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300017787|Ga0183260_10436397All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300017792|Ga0163161_11818165All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300018468|Ga0066662_12111512All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300022901|Ga0247788_1007112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1833Open in IMG/M
3300022901|Ga0247788_1095364All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300024055|Ga0247794_10120907All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300024287|Ga0247690_1018135All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300025315|Ga0207697_10275436All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300025911|Ga0207654_11146485All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300025922|Ga0207646_11469157All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300025923|Ga0207681_10492432All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300025929|Ga0207664_10955032All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300025934|Ga0207686_11069748All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300025935|Ga0207709_11478577All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300025941|Ga0207711_10938165All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300025944|Ga0207661_12130183Not Available507Open in IMG/M
3300025972|Ga0207668_11417619All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300026035|Ga0207703_10711295All Organisms → cellular organisms → Bacteria956Open in IMG/M
3300026121|Ga0207683_11472072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium629Open in IMG/M
3300026297|Ga0209237_1100929All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1266Open in IMG/M
3300026313|Ga0209761_1283922All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300026331|Ga0209267_1230647All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300026530|Ga0209807_1172608All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300026538|Ga0209056_10284912All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300026542|Ga0209805_1160563All Organisms → cellular organisms → Bacteria1022Open in IMG/M
3300026933|Ga0207578_1013430All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300028814|Ga0307302_10650762All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300028828|Ga0307312_10489005All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300030006|Ga0299907_11251438All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300031546|Ga0318538_10492420All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300031681|Ga0318572_10519431All Organisms → cellular organisms → Bacteria710Open in IMG/M
3300031854|Ga0310904_10872097All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia634Open in IMG/M
3300031879|Ga0306919_11355919All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300031894|Ga0318522_10267293All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300031908|Ga0310900_10589532All Organisms → cellular organisms → Bacteria877Open in IMG/M
3300032000|Ga0310903_10180962All Organisms → cellular organisms → Bacteria974Open in IMG/M
3300032066|Ga0318514_10197752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1053Open in IMG/M
3300033290|Ga0318519_11056781All Organisms → cellular organisms → Bacteria505Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil19.20%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere9.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.40%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil5.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.60%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil3.20%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.20%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.40%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.40%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.40%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.40%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere2.40%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.40%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand1.60%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.60%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001537Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001991Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2Host-AssociatedOpen in IMG/M
3300002239Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2Host-AssociatedOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012014Permafrost microbial communities from Nunavut, Canada - A10_80cm_6MEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012899Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017787Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300022901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4EnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300024287Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31EnvironmentalOpen in IMG/M
3300025315Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)Host-AssociatedOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026933Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031894Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_239523013300000033SoilMPEAAVTPSPGFISIAVSDVQRSAAFYEEYLGAVRDTFDFGPDAVAFVGWPTFALSSARRPGQPGPSPETTSIQLWWRA
INPhiseqgaiiFebDRAFT_10580275923300000364SoilVTDAAVTPSPGFISIAVTDVERSAAFYETYLGAVRDTFDFGPGAVAFVGWPTFALSSVRRPDQPERVPPTSPIQLWWRAS
JGI10214J12806_1043838713300000891SoilMARTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPD
JGI10216J12902_11135432633300000956SoilMAETAITPSPGFISIAVSDVARSATFYETYLGGVRDTFDFGPAAVAFVGWPTFALSSVRAPVAP
A2065W1_1040499133300001537PermafrostMTKTVVTGSPGFISIAVTDVARSADFYERYLGGIRDTFDFGPSSAVFVGWPTLALSSARPPGQPG
JGI24743J22301_1013042913300001991Corn, Switchgrass And Miscanthus RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRR
JGI24034J26672_1011970923300002239Corn, Switchgrass And Miscanthus RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTSIQVWWR
JGI25382J43887_1007545133300002908Grasslands SoilMQKTAVTGSPGFISITVSDANRSASFYEQHLGAVRDTFDFGADAVAFVGWPTFALSSARRPGQPGPSPETTSIQLWWRASDAQALYD
Ga0063454_10037196613300004081SoilMAAVAVTPSPGFISIAVSDVERSAAFYQEYLGGIRDTFDYGPGSAVFVGWPTYALSSVRRPGQPGPSP
Ga0062595_10180494713300004479SoilMPETVVTGSPGFISIAVTDVGKSAAFYERYLGTIRDTFDFGPQSAVFVGWPTLALSGVRQPGQPGPSPDTTSIQLWWRASDAQVLH
Ga0062592_10267082323300004480SoilMANAAVTPSPGFISIAVTDVKASAAFYEEYLGGVRDSFDFGPDSAVFVGWPTYALSSARRPGQPGPSPDTTSIQVWWRASDAQ
Ga0062591_10072711413300004643SoilMARTAVTPSPGFISIAVNDVERSAAFYERHLGAIRDTFDWGRGSAVFVGWPTVALSGIRRPGQPGPSP
Ga0062594_10151634013300005093SoilMKRTAVTSSPGFISIAVSDVERSAAFYEQHLGAVRDTFDWGPQSAVFVGWPTFALSGARRPGQSGPSPETTSI
Ga0066680_1074173623300005174SoilMPKTAVTGSPGFISIAVTDANRSAAFYEQYLGAVRDTFDFGPGAVALVGWPTLAVNSLRRAGQPGPSPETTTIQ
Ga0066673_1001595613300005175SoilMEKTAVTGSPGFISIAVTDANRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSARRPGQPGPSPETTSIQLWWRASDAQALYERVV
Ga0066679_1028932813300005176SoilMQKTAVTGSPGFISIAVSDVNRSASFYEQHLGAVRDTFDFGADAVAFVGWPTFALSSARRPGQSGPSPDTTSIQLWWRASDAQAL
Ga0066690_1009604533300005177SoilMQKTAVTGSPGFISIAVSDVNRSASFYEQHLGAVRDTFDFGADAVAFVGWPTFALSSARRPGQSGPS
Ga0066688_1014077133300005178SoilMSRTAVTPSPGFISIQVSDVKRSSEFYERHLGAVRDTFDFGPDAVAYVGWPTVGLNAGRRPGQS
Ga0066688_1102296413300005178SoilMQKTAVTGSPGFISIAVSDVNRSASFYEQHLGAVRDTFDFGADAVAFVGWPTFALSSAR
Ga0066676_1006167913300005186SoilMARTAVTPSPGFISIQVSNVDRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLNAARRPGQSGPSPETTTIQLWW
Ga0070676_1055186113300005328Miscanthus RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSG
Ga0070680_10021784443300005336Corn RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIR
Ga0068868_10016839813300005338Miscanthus RhizosphereMDEVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAARRPGQPGPSPDTTSI
Ga0070660_10025292613300005339Corn RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTT
Ga0070669_10094084013300005353Switchgrass RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTSIQV
Ga0070714_10127779213300005435Agricultural SoilMTPVAVTPSPGFISIAVSDVERSATFYETFLGGIRDTFDFGPGSAVFVGWPTVALSSVRRPGQPGPTPETTSIQLWWRASDAQ
Ga0070705_10130626313300005440Corn, Switchgrass And Miscanthus RhizosphereMARTAVTPSPGFISIQVSDAKRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLSAARRPGQPGPSPDTTTIQLWWRASDA
Ga0070700_10197643213300005441Corn, Switchgrass And Miscanthus RhizosphereMTYAAVTPSPGFITIAVSDVQKSASFYEEYLGGVRDSFDFGPGSAVFVGWPTYALSSARRPGAPVPSPETTSIQVWWRAGDAQALYERA
Ga0070708_10007605613300005445Corn, Switchgrass And Miscanthus RhizosphereMSKTVVTGSPGFISIAVTDVGRSGEFYERYLGGIRDTFDFGPQSVVFVGWPTLALSSARRPGQPGPSPDTT
Ga0070708_10013963443300005445Corn, Switchgrass And Miscanthus RhizosphereMSRTVVTPSPGFISIQVSDAKRSAAFYEEHLGAVRDTFEFGPDAVAYVGWPTFALNAARRPGQAGPAPEATSI*
Ga0070706_10056446213300005467Corn, Switchgrass And Miscanthus RhizosphereMARTAVTPSPGFISIQVSDVTRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLSAAR
Ga0070698_10075456913300005471Corn, Switchgrass And Miscanthus RhizosphereMSKTVVTGSPGFISIAVTDVGRSGEFYERYLGGIRDTFDFGPQSVVFVGWPTLALSSARRPGQPGPSPDTTTIQLWWR
Ga0070699_10076661023300005518Corn, Switchgrass And Miscanthus RhizosphereMRNTAMTPSPGFISIAVSDIERSTTFYETYLGAIRDTFDFGAGAVAFVGWPTFALNATRGPAPSGGSPE
Ga0070699_10133052913300005518Corn, Switchgrass And Miscanthus RhizosphereMSKTVVTGSPGFISIAVTDVGRSGEFYERYLGGIRDTFDFGPQSVVFVGWPTLALSSARRPGQPGPSPDTTTIQLWWRAS
Ga0070684_10168845513300005535Corn RhizosphereMARTAVTPSPGFISIAVSDVERSAAFYVEHLGAIRDTFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPD
Ga0070697_10008715943300005536Corn, Switchgrass And Miscanthus RhizosphereMGKAAVTGSPGFISIAVSDVGRSADFYERYLGAVRDPFDFGPDAVSFVGWPTFAISSVRRPGQPGPSPETTTIQL
Ga0070696_10011816113300005546Corn, Switchgrass And Miscanthus RhizosphereMSKTVVTGSPGFISIAVTDVGRSGEFYERYLGGIRDTFDFGPQSVVFVGWPTLALSSARRPGQPGPSPDTTT
Ga0070696_10050578813300005546Corn, Switchgrass And Miscanthus RhizosphereMDEVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAARRPGQPGPSPDTTS
Ga0066692_1012350713300005555SoilMQKTAVTGSPGFISITVSDAKKSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSVRR
Ga0066707_1076437523300005556SoilMEKTAVTGSPGFISIAVTDANRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSARRPGQPGPSPETTSIQLWWRASDAQALYERV
Ga0066704_1035117623300005557SoilMSFDPNAGRYRQEVVPMARTAVTPSPGFISIQVSDVKRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTVGLNAVRRPGQSGPSPDTTTI
Ga0066698_1065835513300005558SoilMARTAVTPSPGFISVQVSNVNRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLNAARR
Ga0066700_1034097323300005559SoilMQKTAVTGSPGFISITVSDAKKSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSVRRPGQPSPSPSNASIQLWWRASDAQALY
Ga0066699_1095678013300005561SoilMQKTAVTGSPGFISIAVSDVNRSASFYEQHLGAVRDTFDFGADAVAFVGWPTFALSSARRPGQSGPSPDTTSIQ
Ga0068861_10039936713300005719Switchgrass RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQ
Ga0068863_10007383813300005841Switchgrass RhizosphereMPETVVTGSPGFISIAVTDVGKSAAFYERYLGTIRDTFDFGPQSAVFVGWPTLALSGVRQPGQPGPSPDT
Ga0066656_1006654913300006034SoilMSRTAVTPSPGFISIQVSDVKRSSEFYERHLGAVRDTFDFGPDAVAYVGWPTVGLNAGRRPGQSGPSP
Ga0066656_1055313923300006034SoilMEKTAVTGSPGFISIAVTDANRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSARRPGQP
Ga0066652_10016103313300006046SoilMSFDPNAGRYRQEVVHMAPTAVTPSPGFISIQVSDVKRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLSAARRPGQSGPSP
Ga0066652_10184407923300006046SoilMADTAVTPSPGFISIAVSDVERSAAFYERYLGAIRDTFDFGSGALAFVGWPT
Ga0079220_1189133913300006806Agricultural SoilMAGTAVTPSPGFISIAVNDVERSAAFYVEHLGMVRDTFDRGPGSAVFVGWPTVALSGIRRPGQPP
Ga0075434_10052774333300006871Populus RhizosphereMSDVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPESAVFVGWPTYALSAARRPGQPGPSPDT
Ga0075424_10002570813300006904Populus RhizosphereMSDVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPESAVFVGWPTYALSAARRPGQPG
Ga0075435_10147256413300007076Populus RhizosphereMSDVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPESAVFVGWPTYALSAA
Ga0066710_10020860443300009012Grasslands SoilMAPTAVTPSPGFISIQVSDVKRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLNAARRPGQSGPSPDTTTIQLWWRASDAQ
Ga0066710_10162635123300009012Grasslands SoilMQKTAVTGSPGFISITVSDAKKSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSVRRPG
Ga0066710_10395345023300009012Grasslands SoilMQKTAVTGSPGFISITVSDAKRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSVRRPG
Ga0105243_1192386513300009148Miscanthus RhizosphereMKPSAVTPSPGFISIAVSDVTRSATFYETYLGAIRDTFDFGPQAVAFVGWPTFAINSARRPDQASGDAASST
Ga0105243_1229467013300009148Miscanthus RhizosphereMTGSIVTSSPGFISIGVSDVDRSAEFYERYLGGSRDTFDFGPTSAVFVGWPTYALNSQRP
Ga0075423_1260274313300009162Populus RhizosphereMEEAVAMTSVAVTGSPGFISIAVTDVVRSAAFYERYLGGVRDTFDFGPASAVFVGW
Ga0105242_1076548413300009176Miscanthus RhizosphereMDDVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAARRPGQPG
Ga0105242_1142054913300009176Miscanthus RhizosphereMARTAVTPSPGFISIAVNDVERSAAFYERHLGAIRDTFDWGAGSAVFVGWPTVALSGIRRPGQPGPSPETTSIQVWWRANDPQLLYETA
Ga0134088_1050065913300010304Grasslands SoilMSFEPVASLEGRRFAMEKTAVTGSPGFISIAVSDANKSASFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLSAARRPGQSGPSPDTTTIQLWWRASDAQALFDK
Ga0134122_1337272323300010400Terrestrial SoilMDDVAITPSPGFISIAVNDVARSAAFYERFLGGIRDTFDFGPQSAVFVGWPTY
Ga0134121_1214384913300010401Terrestrial SoilMANTAVTGSPGFISIAVTDVARSAEFYERYLGGIRDTFDFGPDSAVFVGWPTVALSAARRPGQPGPSPETTSIQ
Ga0134121_1269140413300010401Terrestrial SoilMPRTVVTPSPGFISIAVQDAQRSAGFYERYLGATRDTFDYGPDSAVFVGWPTFALS
Ga0105246_1134882113300011119Miscanthus RhizosphereMARTAVTPSPGFISIAVSDVQKSAAFYENYLGGVRDSFDFGPDSAVFVGWPTYALSSARRPGAPAPWPDATSIQ
Ga0120159_102704243300012014PermafrostMTKTVVTGSPGFISIAVTDVARSADFYERYLGGIRDTFDFGPSSAVFVGWPTLALSS
Ga0137388_1162759223300012189Vadose Zone SoilMSLVPVASLEGRRFAMEKTAVTGSPGFISIAVSDANRSASFYEQHLGAVRDTFDFGRDAVAFVGWPTFALSSARRPGQAGPTPET
Ga0137377_1008131213300012211Vadose Zone SoilMSFDPNAGRYRQEVVHMAPTAVTPSPGFISIQVSDVKRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLSAARRPGQSGPSPDTTTIQLWWRAS
Ga0137375_1125939723300012360Vadose Zone SoilMSSTVVTPSPGFISIAVKDVARSASFYERYLGATRDTFDFGPDSAVFVGWPTFALSSARRPDLPGPSPE
Ga0137375_1126136213300012360Vadose Zone SoilMGETSSSLPASTKEVGAMTKTAVTGSPGFISIAVGDVNRSASFYERHMGAVRDTFDFGADAIAFVGWPTFAVSSARRPGQPGPSPE
Ga0136614_1076337313300012684Polar Desert SandMPKTAVTPSPGFISIAVSDVHRSATFYEGYLGAVRDTFDFGPDALAFVGWPTFALSSVRRPGQPGPSPDTTSIQ
Ga0157299_1036021413300012899SoilMANAAVTPSPGFISIAVTDVKASAAFYEKYLGGVRDSFDFGPESAVFVGWPTYALSSA
Ga0137416_1067231623300012927Vadose Zone SoilMEKTVVTGSPGFISIAVGDANKSASFYEQHLGAVRDTFDFGADAVAFVGWPTFALSSARRPGQPGPSPATTSIQLWW
Ga0164303_1028977333300012957SoilMPQAAVTPGPGFISITVSDVVRSAAVYETYLGGIRDTFDFGPGSAVFVGWPTVALSGVRGPD
Ga0164301_1138967923300012960SoilMPKTVVTPSPGFVSIAVEDVQRSAAFYERYRGAVRDTFDFGPDSAVFVGWPTCALSS
Ga0164301_1168099123300012960SoilMTPTAVTPSPGFISITVSDVVRSAAFYETYLGGIRDTFDFGPGSAVFVGWPTVALSGLRGPDQPGPLAGT
Ga0164304_1061608813300012986SoilMAATAVTPSPGFLSITVSDVVRSAAFYETYLGGIRDTFDFGPGSAVFVGWPTVALSGVRGPDQPGPLA
Ga0134073_1024749923300015356Grasslands SoilMEKTAVTGSPGFISIAVTDANRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSALAALAA
Ga0134089_1038112723300015358Grasslands SoilMSRVAVTGSPGFISIQVTDTARSAAFYERHLGAVRDTFDFGSDAVAFVGWPTFALSAVRR
Ga0132258_1333974923300015371Arabidopsis RhizosphereMKRTAVTSSPGFISIAVSDVERSAAFYEQHLGAVRDTFDWGPQSAVFVGWPTFALSGARRPGQSGPSPETTSIQVWWRA
Ga0132256_10219599113300015372Arabidopsis RhizosphereVGRVAVTGSPGFISIAVSDVARSASFYERYLGAVRDTFDFGPESAVFVGWPTYALSAAPRPGQPGPSPETTSIQLWWRA
Ga0132255_10239993033300015374Arabidopsis RhizosphereMAPTAVTPSPGFISITVSDVVRSAAFYETYLGGIRDTFDFGPGSAVFVGWPTVALSGVRG
Ga0132255_10392529423300015374Arabidopsis RhizosphereMANPAVTPSPGFISIAVTDVKKSAAFYEDYLGGVRDSFDFGPDSAVFVGWPTYALSSARRPGAPGPSP
Ga0134074_111671713300017657Grasslands SoilMARTAVTPSPGFISIQVSNVDRSAEFYEQHLGAVRDTFDFGPDAVAYVGWPTFGLNAARRPGQSGPSPETTTIQ
Ga0183260_1043639733300017787Polar Desert SandMPRTVVTPSPGFISIAVHDAERSARFYERYLGATRDTFDFGPDSAVFVGWPTF
Ga0163161_1181816523300017792Switchgrass RhizosphereMDEVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAARR
Ga0066662_1211151223300018468Grasslands SoilMSRTAVTPSPGFISIQVSDVKRSSEFYERHLGAVRDTFDFGPDAVAYVGWPTVGLNAGRR
Ga0247788_100711213300022901SoilMARTAVTPSPGFISIAVSDVERSAAFYVEHLGAIRDTFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTS
Ga0247788_109536413300022901SoilMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTSIQVWW
Ga0247794_1012090723300024055SoilMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTSIQVWWRASDPQ
Ga0247690_101813513300024287SoilMGKAAVTGSPGFISIAVSDVGRSADFYERYLGAVRDPFDFGPEAVSFVGWPTFAISSVRRPGQPGPSPETTTIQL
Ga0207697_1027543623300025315Corn, Switchgrass And Miscanthus RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPD
Ga0207654_1114648523300025911Corn RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTSIQ
Ga0207646_1146915723300025922Corn, Switchgrass And Miscanthus RhizosphereMSRTVVTPSPGFISIQVSDAKRSAAFYEEHLGAVRDTFDFGPDAVAYVGWPTFALNAARRPGQAGPAPEATSIQLWW
Ga0207681_1049243223300025923Switchgrass RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPG
Ga0207664_1095503213300025929Agricultural SoilMTPVAVTPSPGFISIAVSDVERSATFYETFLGGIRDTFDFGPGSAVFVGWPTVALSSVRRPGQPGPTPETTSIQLWWRASDAQDVHA
Ga0207686_1106974813300025934Miscanthus RhizosphereMDEVAITPSPGFISIAVNDVARSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAARRPGQPG
Ga0207709_1147857723300025935Miscanthus RhizosphereMTGSIVTSSPGFISIGVSDVDRSAEFYERYLGGSRDTFDFGPTSAVFVGWPTYAL
Ga0207711_1093816523300025941Switchgrass RhizosphereMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTS
Ga0207661_1213018323300025944Corn RhizosphereMPETVVTGSPGFISIAVTDVGKSAAFYERYLGTIRDTFDFGPQSAVFVGWPTLALS
Ga0207668_1141761923300025972Switchgrass RhizosphereMTGSIVTSSPGFISIGVSDVDRSAEFYERYLGGSRDTFDFGPTSAVFVGWPTYALNSQRPPQ
Ga0207703_1071129513300026035Switchgrass RhizosphereMLKTVVTPSPGFVSIAVQDAERSAGFYERYLGARRDTFDYGPDSAVFVGWPTFALSSARRPDLPPPSPDTTSIQLWWRASDAQ
Ga0207683_1147207213300026121Miscanthus RhizosphereMANPAVTPSPGFISIAVTDVKNSAAFYEEYLGGVRDSFDFGPDSAVFVGWPTYALSSARRPGQPGPSPDTTSIQ
Ga0209237_110092913300026297Grasslands SoilMSRGAVTGSPGFISIQVTDTARSAAFYERHLGAVRDTFDFGSDAVAFVGWPTFALSAVRRPGQSGP
Ga0209761_128392223300026313Grasslands SoilMSRGAVTGSPGFISIQVTDTARSAAFYERHLGAVRDTFDFGSDAVAFVGWPTFALSAVRRPGQSGPSPETTTI
Ga0209267_123064723300026331SoilMEKTAVTGSPGFISIAVTDANRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALS
Ga0209807_117260823300026530SoilMRQTAVTPSPGFISIAVSDVSRSAAFYERHLGGVRDTFDFGPDAVAFVGWPTFALSAARRPGRGQRVAAAW
Ga0209056_1028491223300026538SoilMSKTVVTPSPGFISIAVSDIDLSTAFYETYLGGIRDTFDFGANAVAFVGWPTFALNAARGSAQSGASPEASGIQ
Ga0209805_116056323300026542SoilMEKTAVTGSPGFISIAVTDANRSASFYEQHLGAVRDTFDFGPDAVAFVGWPTFALSSARRPGQPGPSPETTSIQLWWRA
Ga0207578_101343023300026933SoilMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPG
Ga0209590_1071503013300027882Vadose Zone SoilMSPTAVTGSPGFISIQVRDTARSAAFYERHLGAVRDTFDFGPDAVAFLGWPTF
Ga0307302_1065076223300028814SoilMAETAVTGSPGFISISVSDVERSASFYEHYLGGVRDTFDFGPNAVAFVGWPTFALSSVRRPGQPGPSPETTTIQLWWRASDAQ
Ga0307312_1048900523300028828SoilMRSFAVTPSPGFISIAVNDVVRSAAFYETYLGAIRDTFDFGPQSAVFVGWPTVALSSARRPGQPGPSSETTSIQLWWRASDAQALYEQA
Ga0299907_1125143813300030006SoilMSKTAVTGSPGFISIAVSDANTSAAFYEQYLGAIRDTFDFGPDAVAFVGWPTVAVTSVRRPGQPGSSPETT
Ga0318538_1049242013300031546SoilMSDVAVTPSPGFISIAVTDVDRSAAFYERYLGGIRDTFDFGPQSAVFVGWPTY
Ga0318572_1051943113300031681SoilMSDVAVTPSPGFISIAVTDVDRSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAVRRPGQPGPSPDATTIQVWW
Ga0310904_1087209713300031854SoilMTGSVVTSSPGFISIGVSDVERSATFYERYLGGTRDTFDYGPGSAVFVGWPTYALTSQRPPQADQPPATTIQLWWRASDAQAL
Ga0306919_1135591923300031879SoilMSDVAVTPSPGFISIAVTDVDRSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAVRRPGQPGPSPDATTIQVWWR
Ga0318522_1026729313300031894SoilMSDVAVTPSPGFISIAVTDVDRSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAVRRPGQPGPS
Ga0310900_1058953213300031908SoilMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGPSPDTTSIQVWWRA
Ga0310903_1018096223300032000SoilMAHTAVTPSPGFISIAVSDVERSAAFYVEHLGAVRDSFDWGPGSAVFVGWPTVALSGIRRPGQPGP
Ga0318514_1019775233300032066SoilMSDVAVTPSPGFISIAVTDVDRSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAVRRPGQPGPSPDATTIQ
Ga0318519_1105678123300033290SoilMSDVAVTPSPGFISIAVTDVDRSAAFYERYLGGIRDTFDFGPQSAVFVGWPTYALSAV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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