NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F067491

Metagenome / Metatranscriptome Family F067491

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F067491
Family Type Metagenome / Metatranscriptome
Number of Sequences 125
Average Sequence Length 41 residues
Representative Sequence MLTFAISVAIMLAVVGGSVQWAVRAERRRNLGEDGHARHH
Number of Associated Samples 72
Number of Associated Scaffolds 125

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 86.40 %
% of genes near scaffold ends (potentially truncated) 13.60 %
% of genes from short scaffolds (< 2000 bps) 86.40 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (71.200 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil
(28.800 % of family members)
Environment Ontology (ENVO) Unclassified
(28.800 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.800 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 51.47%    β-sheet: 0.00%    Coil/Unstructured: 48.53%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 125 Family Scaffolds
PF00909Ammonium_transp 60.80
PF00795CN_hydrolase 1.60
PF13727CoA_binding_3 0.80
PF04085MreC 0.80
PF00120Gln-synt_C 0.80
PF03070TENA_THI-4 0.80
PF13556HTH_30 0.80
PF00999Na_H_Exchanger 0.80

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 125 Family Scaffolds
COG0004Ammonia channel protein AmtBInorganic ion transport and metabolism [P] 60.80
COG0025NhaP-type Na+/H+ or K+/H+ antiporterInorganic ion transport and metabolism [P] 0.80
COG0475Kef-type K+ transport system, membrane component KefBInorganic ion transport and metabolism [P] 0.80
COG1792Cell shape-determining protein MreCCell cycle control, cell division, chromosome partitioning [D] 0.80
COG3004Na+/H+ antiporter NhaAEnergy production and conversion [C] 0.80
COG3263NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domainsEnergy production and conversion [C] 0.80
COG4651Predicted Kef-type K+ transport protein, K+/H+ antiporter domainInorganic ion transport and metabolism [P] 0.80


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms71.20 %
UnclassifiedrootN/A28.80 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300003373|JGI25407J50210_10076719All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300005328|Ga0070676_11597796All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300005459|Ga0068867_102286967All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300005506|Ga0068912_10838764All Organisms → cellular organisms → Bacteria → Proteobacteria723Open in IMG/M
3300005506|Ga0068912_10877976All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300005719|Ga0068861_100621420All Organisms → cellular organisms → Bacteria994Open in IMG/M
3300005937|Ga0081455_10079540All Organisms → cellular organisms → Bacteria2691Open in IMG/M
3300005981|Ga0081538_10002556All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales17689Open in IMG/M
3300005981|Ga0081538_10034506All Organisms → cellular organisms → Bacteria3343Open in IMG/M
3300005981|Ga0081538_10067277All Organisms → cellular organisms → Bacteria2001Open in IMG/M
3300005985|Ga0081539_10096680All Organisms → cellular organisms → Bacteria1514Open in IMG/M
3300006845|Ga0075421_101734628Not Available674Open in IMG/M
3300006876|Ga0079217_10260048Not Available933Open in IMG/M
3300006881|Ga0068865_101247873All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300006894|Ga0079215_10137856Not Available1143Open in IMG/M
3300006918|Ga0079216_11268867All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300007004|Ga0079218_12668060All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300007004|Ga0079218_13435330All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300009098|Ga0105245_12199466Not Available605Open in IMG/M
3300009156|Ga0111538_11777721All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300009789|Ga0126307_10027251All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales4375Open in IMG/M
3300009789|Ga0126307_10063028All Organisms → cellular organisms → Bacteria2909Open in IMG/M
3300009789|Ga0126307_10100057All Organisms → cellular organisms → Bacteria2297Open in IMG/M
3300009789|Ga0126307_10105579All Organisms → cellular organisms → Bacteria2235Open in IMG/M
3300009789|Ga0126307_10192815All Organisms → cellular organisms → Bacteria1634Open in IMG/M
3300009789|Ga0126307_10448036All Organisms → cellular organisms → Bacteria1041Open in IMG/M
3300009789|Ga0126307_10697287All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300009789|Ga0126307_10746976Not Available789Open in IMG/M
3300009789|Ga0126307_10821423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria750Open in IMG/M
3300009840|Ga0126313_10005314All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7677Open in IMG/M
3300009840|Ga0126313_10021445All Organisms → cellular organisms → Bacteria4305Open in IMG/M
3300009840|Ga0126313_10040283All Organisms → cellular organisms → Bacteria3253Open in IMG/M
3300009840|Ga0126313_10387867All Organisms → cellular organisms → Bacteria1106Open in IMG/M
3300009840|Ga0126313_10565821Not Available914Open in IMG/M
3300009840|Ga0126313_10644626All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300009840|Ga0126313_10672726All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300009840|Ga0126313_11435527All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300010036|Ga0126305_10298183All Organisms → cellular organisms → Bacteria1046Open in IMG/M
3300010036|Ga0126305_10417122Not Available887Open in IMG/M
3300010036|Ga0126305_10637006All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300010038|Ga0126315_10279734All Organisms → cellular organisms → Bacteria1025Open in IMG/M
3300010038|Ga0126315_10674900Not Available673Open in IMG/M
3300010039|Ga0126309_10027592All Organisms → cellular organisms → Bacteria2550Open in IMG/M
3300010040|Ga0126308_10268564Not Available1114Open in IMG/M
3300010040|Ga0126308_10739083Not Available678Open in IMG/M
3300010040|Ga0126308_10839451All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300010041|Ga0126312_10348644All Organisms → cellular organisms → Bacteria1049Open in IMG/M
3300010042|Ga0126314_10439098All Organisms → cellular organisms → Bacteria943Open in IMG/M
3300010042|Ga0126314_10983566All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300010044|Ga0126310_10371504Not Available1009Open in IMG/M
3300010044|Ga0126310_10540321Not Available859Open in IMG/M
3300010045|Ga0126311_10249993All Organisms → cellular organisms → Bacteria1315Open in IMG/M
3300010045|Ga0126311_11259373All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300010166|Ga0126306_10044322All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3059Open in IMG/M
3300010166|Ga0126306_10111423All Organisms → cellular organisms → Bacteria1992Open in IMG/M
3300010166|Ga0126306_10239264All Organisms → cellular organisms → Bacteria1382Open in IMG/M
3300011333|Ga0127502_11054513All Organisms → cellular organisms → Bacteria741Open in IMG/M
3300012043|Ga0136631_10069993All Organisms → cellular organisms → Bacteria1320Open in IMG/M
3300012045|Ga0136623_10055573Not Available1728Open in IMG/M
3300012045|Ga0136623_10113243All Organisms → cellular organisms → Bacteria1182Open in IMG/M
3300012046|Ga0136634_10104661All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300012091|Ga0136625_1067526Not Available1276Open in IMG/M
3300012091|Ga0136625_1290162Not Available552Open in IMG/M
3300012093|Ga0136632_10372034Not Available641Open in IMG/M
3300012188|Ga0136618_10075836All Organisms → cellular organisms → Bacteria1486Open in IMG/M
3300012212|Ga0150985_109091792All Organisms → cellular organisms → Bacteria1635Open in IMG/M
3300012212|Ga0150985_115517811All Organisms → cellular organisms → Bacteria1194Open in IMG/M
3300012469|Ga0150984_117804863All Organisms → cellular organisms → Bacteria2101Open in IMG/M
3300012529|Ga0136630_1144381Not Available866Open in IMG/M
3300012684|Ga0136614_10572776All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300014325|Ga0163163_12835109Not Available541Open in IMG/M
3300014326|Ga0157380_13215333All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300017695|Ga0180121_10111306Not Available988Open in IMG/M
3300017787|Ga0183260_10196800All Organisms → cellular organisms → Bacteria1415Open in IMG/M
3300017787|Ga0183260_10235329All Organisms → cellular organisms → Bacteria1269Open in IMG/M
3300017787|Ga0183260_10640483Not Available678Open in IMG/M
3300017789|Ga0136617_10887905Not Available681Open in IMG/M
3300018081|Ga0184625_10080496All Organisms → cellular organisms → Bacteria1666Open in IMG/M
3300018422|Ga0190265_10048686All Organisms → cellular organisms → Bacteria3677Open in IMG/M
3300018422|Ga0190265_10540013All Organisms → cellular organisms → Bacteria1281Open in IMG/M
3300018422|Ga0190265_10561129All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300018422|Ga0190265_10705267Not Available1131Open in IMG/M
3300018422|Ga0190265_10979086All Organisms → cellular organisms → Bacteria968Open in IMG/M
3300018422|Ga0190265_11187757All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300018422|Ga0190265_12949749Not Available568Open in IMG/M
3300018429|Ga0190272_10920980All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300018432|Ga0190275_10174378All Organisms → cellular organisms → Bacteria2008Open in IMG/M
3300018432|Ga0190275_10317077All Organisms → cellular organisms → Bacteria1536Open in IMG/M
3300018432|Ga0190275_10418655Not Available1354Open in IMG/M
3300018432|Ga0190275_10447473All Organisms → cellular organisms → Bacteria1314Open in IMG/M
3300018432|Ga0190275_10615168Not Available1135Open in IMG/M
3300018466|Ga0190268_11983086All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300018476|Ga0190274_10726218All Organisms → cellular organisms → Bacteria1041Open in IMG/M
3300018476|Ga0190274_11031150All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300018476|Ga0190274_13499796All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300018481|Ga0190271_10660074Not Available1167Open in IMG/M
3300019377|Ga0190264_10512302All Organisms → cellular organisms → Bacteria825Open in IMG/M
3300019377|Ga0190264_10899925All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300019377|Ga0190264_12302883All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300019767|Ga0190267_10205106All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300019767|Ga0190267_11317720Not Available540Open in IMG/M
3300019889|Ga0193743_1097267Not Available1114Open in IMG/M
3300021976|Ga0193742_1068566All Organisms → cellular organisms → Bacteria1399Open in IMG/M
3300025933|Ga0207706_10218254All Organisms → cellular organisms → Bacteria1670Open in IMG/M
3300026118|Ga0207675_101364298All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300027691|Ga0209485_1239003All Organisms → cellular organisms → Bacteria580Open in IMG/M
3300027909|Ga0209382_12194938All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300028596|Ga0247821_10056609All Organisms → cellular organisms → Bacteria2148Open in IMG/M
3300028596|Ga0247821_10194155All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300028596|Ga0247821_11065680All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300028812|Ga0247825_10835564All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300028812|Ga0247825_11058498Not Available590Open in IMG/M
3300028814|Ga0307302_10691474Not Available507Open in IMG/M
3300030336|Ga0247826_10894140Not Available700Open in IMG/M
3300031548|Ga0307408_100140568All Organisms → cellular organisms → Bacteria1895Open in IMG/M
3300031824|Ga0307413_11218386Not Available655Open in IMG/M
3300031824|Ga0307413_11788601Not Available550Open in IMG/M
3300031852|Ga0307410_10979424Not Available728Open in IMG/M
3300031903|Ga0307407_10837501All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300031995|Ga0307409_100687372All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300032004|Ga0307414_11361614All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300032005|Ga0307411_12116610Not Available527Open in IMG/M
3300033551|Ga0247830_11580142All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300034144|Ga0334962_033652Not Available667Open in IMG/M
3300034172|Ga0334913_091781All Organisms → cellular organisms → Bacteria641Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil28.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil20.80%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand12.00%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere6.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.80%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere3.20%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.40%
Sub-Biocrust SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil1.60%
SoilEnvironmental → Terrestrial → Soil → Sand → Desert → Soil1.60%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere1.60%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.60%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.60%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.60%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.80%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.80%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.80%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.80%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.80%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300003373Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005506Soil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300011333Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012043Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)EnvironmentalOpen in IMG/M
3300012045Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)EnvironmentalOpen in IMG/M
3300012046Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)EnvironmentalOpen in IMG/M
3300012091Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ483 (23.06)EnvironmentalOpen in IMG/M
3300012093Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)EnvironmentalOpen in IMG/M
3300012188Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)EnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012529Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)EnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300017695Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)EnvironmentalOpen in IMG/M
3300017787Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)EnvironmentalOpen in IMG/M
3300017789Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019767Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 TEnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300021976Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027691Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M
3300034144Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 58SNSEnvironmentalOpen in IMG/M
3300034172Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMSEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25407J50210_1007671943300003373Tabebuia Heterophylla RhizosphereRWGGDAMLTFAIAVAIMFAVVGASVRWAARAERRRHLREEADAGHH*
Ga0070676_1159779623300005328Miscanthus RhizosphereMLSLIVAVLIMLAVVGGSVQWAVRAQRRRNPVEEGHARDHR*
Ga0068867_10228696723300005459Miscanthus RhizosphereMLSLLVAVALMLAVVGGSVQWAVRAQRRRNPVEEGHARDHR*
Ga0068912_1083876423300005506SoilMLSFAISVLILIAVVGGSIQWAVRAQRRRDTQGRGHAGHH*
Ga0068912_1087797623300005506SoilMLTLAISLAVMLAVVGGAVKWAVRAERRRVLGGEGHAGDH*
Ga0068861_10062142043300005719Switchgrass RhizosphereMSVALMLAVVGGSMHWAVRKERRRKDSQEAANARHH*
Ga0081455_1007954063300005937Tabebuia Heterophylla RhizosphereSGDDAMLTLVISVAIMFAVVGASVRWATHAERRRNLREEADAGHH*
Ga0081538_1000255683300005981Tabebuia Heterophylla RhizosphereMLTFAISLVIMLVVVGASVQWAVRADRRNLEREADARDH*
Ga0081538_1003450623300005981Tabebuia Heterophylla RhizosphereMLTFLISVAIMLAVVGGCVKWAVRAERRRNLLEEPDGRHH*
Ga0081538_1006727723300005981Tabebuia Heterophylla RhizosphereMLTFAIAVAIMFAVVGASVRWAARAERRRHLREEADAGHH*
Ga0081539_1009668023300005985Tabebuia Heterophylla RhizosphereMMSLLVAVALMLAVVTASVQWAVRAERRRNPGEEGHARDHR*
Ga0075421_10173462823300006845Populus RhizosphereMLSFAIALAIMLAVVGASVKWAVRAQRRRDLGEEGHASHH*
Ga0079217_1026004823300006876Agricultural SoilMLSFAISVAIMIAVVGASVQWAVRAERRRNTREEGHARHH*
Ga0068865_10124787313300006881Miscanthus RhizosphereSFAMSVALMLAVVGGSMHWAVRKERRRKDSQEAANARHH*
Ga0079215_1013785623300006894Agricultural SoilMLTFLASVLIMLAVVGGSLQWAVREQRRRNLREEGHARHH*
Ga0079216_1126886713300006918Agricultural SoilGAAQVIELAVAVAIMLAVVGGSVQWAVRAERRRNPREEGHARHH*
Ga0079218_1266806023300007004Agricultural SoilMLTFAISVAIMLAVVGASVQWAVRAERRRDLREDGHARHH*
Ga0079218_1343533023300007004Agricultural SoilMLSFAISVAIMLAVVYGSVQWAVRAERRRDLEEEGHARHH*
Ga0105245_1219946613300009098Miscanthus RhizosphereMLSLIVAVLIMLAVVGGSVQWAVRAQRRRDILEEGHARDHR*
Ga0111538_1177772123300009156Populus RhizosphereVLSFAMSVALMLAVVGGSMHWAVRKERRRKDSQEAANARHH*
Ga0126307_1002725173300009789Serpentine SoilVLSLIVSLVLMLAVVGGSVQWAVRAQRRRNPVEEGHARDHR*
Ga0126307_1006302853300009789Serpentine SoilMLSFLIAVAIMLAVVGASVQWAVRTERRRNLREDGNARDH*
Ga0126307_1010005723300009789Serpentine SoilMLTFAISVAIMLAVIGGSVQWAVRAERRRDLEEDGNARHH*
Ga0126307_1010557923300009789Serpentine SoilMLTFAISVAIMLAVVGGSVKWAVREQRRRNLLEESDAPHH*
Ga0126307_1019281523300009789Serpentine SoilMLTFAISVAIMLAVVGASVQWAVRAERRRDLREDGNARDH*
Ga0126307_1044803643300009789Serpentine SoilMLSFVIAVVIMFAVVGGAMKWAVRTERRRILMEEGHAGDH*
Ga0126307_1069728733300009789Serpentine SoilMMSFAVAVAIMLAVVGASVQWAVRAERRRNPGEEGHARDHR*
Ga0126307_1074697623300009789Serpentine SoilVLTFAISLLILAAVVGGSVQWAVRKERRRNRPEEAGHARHH*
Ga0126307_1082142323300009789Serpentine SoilMLSLLIALAIMLVVVGGAMKWAVRAERRRVLTEEGHAGDH*
Ga0126313_1000531453300009840Serpentine SoilMLTLAMSLLIMFAVAAAAAQWAQRAERRRNLGKDGHARHH*
Ga0126313_1002144523300009840Serpentine SoilMLTFAIALVIMLAVIGVSVQWAVREERRRDLGEDGNARHH*
Ga0126313_1004028363300009840Serpentine SoilMLTLVISVAIMLAVVGGSVQWAVRAQRRHNLREEPDARHH*
Ga0126313_1038786723300009840Serpentine SoilMLTFAVALAIMFAVVGASVQWAARAERRRNPGEESDARHH*
Ga0126313_1056582123300009840Serpentine SoilMLTFAISVAIMLAVVGASVQWAVRAERRRDLREDGNARDR*
Ga0126313_1064462623300009840Serpentine SoilVLSFAISLVILAAVVGGSVQWAVRAERRRNRPEEAGHARHH*
Ga0126313_1067272623300009840Serpentine SoilMLSLIVSVAILFAVVGGSVQWAVRAERRRNPREEGHARHS*
Ga0126313_1143552723300009840Serpentine SoilMLSFAIALCLMLAVVWASTQWAVRAQRRRNPGEEGHARHH*
Ga0126305_1029818323300010036Serpentine SoilMLTFAISVAIMLAVVGGSVHWAARAERRRNPSEEGHARHH*
Ga0126305_1041712223300010036Serpentine SoilMLTFAISVAIMLAVIGGSVQWAVRAERRRDLEEDGNAR
Ga0126305_1063700623300010036Serpentine SoilMLTFAISVAVMLAVVGGSVKWAVREQRRRNLLEESDAPHH*
Ga0126315_1027973423300010038Serpentine SoilMLTFAIALVIMLAVIGVSVQWAVRAERRRDLGEDGNARHH*
Ga0126315_1067490023300010038Serpentine SoilMLSFAISMLIMLAVVGGSVQWAVRKQRRQNLSEEAAHGRHH*
Ga0126309_1002759233300010039Serpentine SoilMLTFAISVAIMLAVVGGSVQWAVRAERRRNLGEDGHARHH*
Ga0126308_1026856413300010040Serpentine SoilMLTLAIAVAIMFAVVTASVQWAVRAERRRDLREDGNAGHH*
Ga0126308_1073908323300010040Serpentine SoilMLTFAISLAIMLAVVGGSVQWAVRAERRRNLREDGHARHH*
Ga0126308_1083945133300010040Serpentine SoilMLTLAIAVAIMLAVVTASVQWAVRAERRRDLREDGNAGHH*
Ga0126312_1034864443300010041Serpentine SoilMLTFAIALAIMFAVVGASVKWAVRAERRRDLGEDGNARHH*
Ga0126314_1043909843300010042Serpentine SoilMLTFAIALAIMFAVVGASVKWAVRAERRRDFGEDGNARHH*
Ga0126314_1098356623300010042Serpentine SoilMLALVIAVAIMLAVVTTSVQWAVRAERRRDLREDGHAGHH*
Ga0126310_1037150413300010044Serpentine SoilMLSFAIALCLMLPVVWASTQWAVRAQRRRNPGEEGHARHH*
Ga0126310_1054032113300010044Serpentine SoilMLTLAIAVAIMLAVVTASVQWAVRAERRRDLREDGNAGH
Ga0126311_1024999343300010045Serpentine SoilMLTLAIAVAIMFAVVTASVQWAVRAERRRDLREDGHAGHH*
Ga0126311_1125937333300010045Serpentine SoilMTSFVISLAIMLAVVGASVQWATRAERRRDLKEDGNARHH*
Ga0126306_1004432223300010166Serpentine SoilMLTFMISVAIMLTVVAASAQWAVRTERRRNPRKEPDGRHH*
Ga0126306_1011142323300010166Serpentine SoilMLTFAIALVIMLAVVGGSVQWAVRAERRRNLGEDGHARHH*
Ga0126306_1023926423300010166Serpentine SoilMLSFIVSLILMLAVVGGSMHWAVREQRRRTRPEEPHAGHH*
Ga0127502_1105451333300011333SoilVITLTVSVLIMLAVVGGSVQWAVRAERRRNPREEGHARHH*
Ga0136631_1006999323300012043Polar Desert SandMLSFAISLAIMLAVVGGSVQWAVRTERRRNLEEDGHARHH*
Ga0136623_1005557323300012045Polar Desert SandMLTFAISLAIMLAVVGGSVQWAVRAERRRNPGEDGHARHH*
Ga0136623_1011324323300012045Polar Desert SandVLSFAVAVAIMLAVVGASVQWALRKQRRRTLIEEAHARNH*
Ga0136634_1010466123300012046Polar Desert SandMLSFAIALAIMLAVVGGSVQWAVRTERRRNLEEDGHARHH*
Ga0136625_106752623300012091Polar Desert SandMLSFAISLAIMLAVVGGSVQWAVRAERRRNLKEDGHARHH*
Ga0136625_129016223300012091Polar Desert SandMLTFAISLAIMLAVVGGCVQWAVRAERRRNPGEDGHARHH*
Ga0136632_1037203423300012093Polar Desert SandLSFAVAVIIMLAVVGASVQWALRKQRRRTLIEEAHARNH*
Ga0136618_1007583623300012188Polar Desert SandLSFAVAVAIMLAVVGASVQWALRKQRRRTLIEEAHARNH*
Ga0150985_10909179223300012212Avena Fatua RhizosphereMLSLIVSVAIMLAVVGGSIQWAVRAERRRHPREEGHARHS*
Ga0150985_11551781123300012212Avena Fatua RhizosphereMLTFVLSLVILFAVVGGSVQWALRKERRRTVTEEGHARHH*
Ga0150984_11780486333300012469Avena Fatua RhizosphereVLTLVVALLIMLAVVWSSLQWAVRAERRRDLRGEGRAGDHR*
Ga0136630_114438123300012529Polar Desert SandMLTFAISLAIMLAVVGGSVQWAVRAERRRNLKEDGHARHH*
Ga0136614_1057277633300012684Polar Desert SandVLSFAVAVIIMLAVVGASVQWALRKQRRRTLIEEAHARNH*
Ga0163163_1283510923300014325Switchgrass RhizosphereMLSLLVAVALMLAVVGGSVQWAVRAERRRNLGEDGNAGNH*
Ga0157380_1321533333300014326Switchgrass RhizosphereVLIMLAVVGGSLLWAVRKQRRLNPPEEAAHARHH*
Ga0180121_1011130623300017695Polar Desert SandMLSFAIALAIMLAVVGGSVQGAVRTERRRNLEEDGHARHH
Ga0183260_1019680023300017787Polar Desert SandMLSFAISLAIMLAVVGGSVQWAVRAERRRNLKEDGHARHH
Ga0183260_1023532953300017787Polar Desert SandMLTFAISLAIMLAVVGGSVQWAVRAERRRNPGEDGHARHH
Ga0183260_1064048323300017787Polar Desert SandMLSFAIALAIMLAVVGGSGQWAVRTERRRNLEEDGHARHH
Ga0136617_1088790523300017789Polar Desert SandVLSFAVAVAIMLAVVGASVQWALRKQRRRTLIEEAHARNH
Ga0184625_1008049623300018081Groundwater SedimentMLTFAIAVAIMLAVVGASVQWAARAERRRNLREEPDARHH
Ga0190265_1004868623300018422SoilMMSLIVAVALMLAVLTASAQWAARTERRRNPGEEGHARDHR
Ga0190265_1054001333300018422SoilVISLLVSVAIMLAVVGGSVQWAAREQRRRNPGEEGHARHH
Ga0190265_1056112923300018422SoilMMSFAISVAIMLAVVGASVQWAVRAERRRNPREEGHARDHR
Ga0190265_1070526723300018422SoilMMSLVIAVALMLAVVGGSVQWAVRTERRRNPREEGHARDHR
Ga0190265_1097908633300018422SoilMLTFAISVAIMLAVVGGSVQWAVRAERRRELQEDGDAGHH
Ga0190265_1118775723300018422SoilMLSFAVSVAIMLAVVGGSLQWAVRAQRRRNPGEEGHARHH
Ga0190265_1294974913300018422SoilMMLSFAVSVAVMLAVVGGSLQWAVRAQRRRNPGEEGHARHH
Ga0190272_1092098023300018429SoilMMLSFAVSVAIMLAVVGGSLQWAVRAQRRRNPGEEGHARHH
Ga0190275_1017437853300018432SoilMLSFAISLAIMLAVVGGSVQWAARTSRRRNLSEDAHARDH
Ga0190275_1031707723300018432SoilMLALAISLCLMLAVLGASVQWAVRAERRRNLREDRDARHH
Ga0190275_1041865523300018432SoilMLTLAISLCLMLAVLGASVQWAVRAERRRNPREDGDARHH
Ga0190275_1044747343300018432SoilMLSFAISLAIMLAVVGGSVQWAVRTERRRNLEEDGHARDH
Ga0190275_1061516823300018432SoilMLSFAIALTIMFAVVGGSVQWAVRTERRRNLEEDGYARHH
Ga0190268_1198308623300018466SoilVLDLIVSLVIMLAVVGGSVQWAVRAERRRDLGEDGNARHH
Ga0190274_1072621833300018476SoilMLSLLVAVALMLAVVGGSVQWAVRAQRRRNPVEEGHARDHR
Ga0190274_1103115013300018476SoilRAGEDGHLMLTLAISLCLMLAVLGASVQWAVRAERRRNLREDRDARHH
Ga0190274_1349979633300018476SoilEDGQLMLSFVIAVAIMLAVVGGAMKWAVRTERRRVLMEEGHAGDH
Ga0190271_1066007423300018481SoilMLSLIVAVLIMLAVVGGSVQWAVRAQRRRDILEEGHARDHR
Ga0190264_1051230243300019377SoilVITLTVSILIMLAVVGGSVQWAVRAERRRNPREEGHAGHH
Ga0190264_1089992533300019377SoilGEDGHVMLALAISLCLMLAVLGASVQWAVRAERRRNPREDGDARHH
Ga0190264_1230288313300019377SoilAARSREGAVMLTFAISLLLMFAVVGASVRWATRAERRRNLGEDGHGRHH
Ga0190267_1020510623300019767SoilMLTLAIALAIMLTVVGGSVQWAVRAERRRNPGEDGNAGHH
Ga0190267_1131772023300019767SoilMLTLLLAVAIMFAVVTASVQWAVREERRRNLREDGHAGHH
Ga0193743_109726723300019889SoilMLTFVIALALMFAVVGASVQWAVRAERRRNPGEESDARHH
Ga0193742_106856623300021976SoilMLTFAISLAIMIAVVGASVQWAVRAERRRNPGEESDARHH
Ga0207706_1021825423300025933Corn RhizosphereMLSLLVTVALMLAVVGGSVQWAVRAQRRRNPVEEGHARDHR
Ga0207675_10136429833300026118Switchgrass RhizosphereMLSFAVAVIIMLAVVGGSVQWAVRAQRRRDILEEGHARDHR
Ga0209485_123900333300027691Agricultural SoilGAAQVIELAVAVAIMLAVVGGSVQWAVRAERRRNPREEGHARHH
Ga0209382_1219493823300027909Populus RhizosphereMLSFAIALAIMLAVVGASVKWAVRAQRRRDLGEEGHASHH
Ga0247821_1005660913300028596SoilMLALAISLCLMLAVVGASVQWAVRAERRRNLREDGDARHH
Ga0247821_1019415523300028596SoilMLSLIVAVLIMLAVVGGSVPWAVRAQRRRDILEEGHARDHR
Ga0247821_1106568023300028596SoilMLTFAISVLIMLAVVGGSLLWAVRKQRRLNPSEEAAHARHH
Ga0247825_1083556433300028812SoilVVGGDDHGGAAVMLSLLVAVALMLAVVGGSVQWAVRAQRRRNPVEEGHARDHR
Ga0247825_1105849823300028812SoilMLALAISLCLMLAVVGASVQWAVRAERRRNPREDGDARHH
Ga0307302_1069147423300028814SoilMLTLALSVAIMFAVVWASVQWAVRAERRRNYREGSDARHH
Ga0247826_1089414023300030336SoilMLTLAIAVAIMLAVVTASVQWAVRAERRREIGEDGNAGHH
Ga0307408_10014056823300031548RhizosphereMLTFAISVAIMLAVIGGSVQWAVRAERRRDLEEDGNARHH
Ga0307413_1121838623300031824RhizosphereMLSLVVAIVIMLAVVGGSVQWAVRAERRRNPREEGHARHH
Ga0307413_1178860113300031824RhizosphereMLTFAIALVIMLAVVGGSVQWAVRAERRRELEEGGDARDH
Ga0307410_1097942413300031852RhizosphereMLSFAIALCLMLAVVWASTQWAVRAQRRRTPGEEGHARHH
Ga0307407_1083750143300031903RhizosphereAAQVITLTVSVLIMLAVVGGSVQWAVRAERRRNPREEGHARHH
Ga0307409_10068737213300031995RhizosphereEDGYVMLSFAIALCLMLAVVWASTQWAVRAQRRRNPGEEGHARHH
Ga0307414_1136161423300032004RhizosphereMLTLVISVAIMLAVVGGSVQWAVRAQRRHNLREEPDARHH
Ga0307411_1211661023300032005RhizosphereVITLTVSVLIMLAVVGGSVQWAVRAERRRNPREEGHARHS
Ga0247830_1158014213300033551SoilVLTFAIALAIMFAVVGASVQWAARAERRRNLREEPDARHH
Ga0334962_033652_60_1823300034144Sub-Biocrust SoilVLTLAISISIMLAVVGGSVQWAVRAERRRNPREDGNARHH
Ga0334913_091781_492_6143300034172Sub-Biocrust SoilMLSFAIAVTIMLAVVGASVQWAVRAERRRNLREDGNARDH


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