Metagenome / Metatranscriptome Family F067216

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F067216
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	75 residues
Representative Sequence	MKIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRRSSFTRSSRRPHRFRALECDG
Number of Associated Samples	115
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.63 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	89.68 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.191 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.714 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.49% β-sheet: 13.40% Coil/Unstructured: 70.10%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF13520	AA_permease_2	25.40
PF00920	ILVD_EDD	0.79
PF01633	Choline_kinase	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.59

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	93.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	93.65 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	92.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	92.86 %
Thalassobaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae	0.79 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	92.86 %
Thalassobaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Thalassobaculum	0.79 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_103404688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300002459\|JGI24751J29686_10070537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	720	Open in IMG/M
3300003152\|Ga0052254_1044688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	779	Open in IMG/M
3300004114\|Ga0062593_100781330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	946	Open in IMG/M
3300004463\|Ga0063356_100272955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2071	Open in IMG/M
3300005093\|Ga0062594_103333530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300005160\|Ga0066820_1017793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300005169\|Ga0066810_10068731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300005180\|Ga0066685_10547925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	798	Open in IMG/M
3300005295\|Ga0065707_10464541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	788	Open in IMG/M
3300005345\|Ga0070692_10099223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1594	Open in IMG/M
3300005347\|Ga0070668_101472816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	622	Open in IMG/M
3300005366\|Ga0070659_100449088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1093	Open in IMG/M
3300005459\|Ga0068867_101975327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300005545\|Ga0070695_101615798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300005549\|Ga0070704_100861629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	813	Open in IMG/M
3300005559\|Ga0066700_10588479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	776	Open in IMG/M
3300006576\|Ga0074047_11838616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300006846\|Ga0075430_101702648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	517	Open in IMG/M
3300006852\|Ga0075433_11646243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300006854\|Ga0075425_100180436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2425	Open in IMG/M
3300006876\|Ga0079217_10804137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300006880\|Ga0075429_100238331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1593	Open in IMG/M
3300006904\|Ga0075424_101529992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	708	Open in IMG/M
3300006953\|Ga0074063_13460196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	940	Open in IMG/M
3300009081\|Ga0105098_10012754	All Organisms → cellular organisms → Bacteria	3124	Open in IMG/M
3300009100\|Ga0075418_11110445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	856	Open in IMG/M
3300009137\|Ga0066709_102230709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	754	Open in IMG/M
3300009156\|Ga0111538_10432609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1667	Open in IMG/M
3300009156\|Ga0111538_11277441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	927	Open in IMG/M
3300009156\|Ga0111538_13632691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300009157\|Ga0105092_10200510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1114	Open in IMG/M
3300009162\|Ga0075423_12182309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300009553\|Ga0105249_10908560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	947	Open in IMG/M
3300009553\|Ga0105249_12263277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300009678\|Ga0105252_10370312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300009818\|Ga0105072_1007635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1867	Open in IMG/M
3300010039\|Ga0126309_10058711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1867	Open in IMG/M
3300010047\|Ga0126382_10534375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	950	Open in IMG/M
3300010333\|Ga0134080_10317717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	703	Open in IMG/M
3300010403\|Ga0134123_10590187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1066	Open in IMG/M
3300010403\|Ga0134123_12077156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300011003\|Ga0138514_100020290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1186	Open in IMG/M
3300012198\|Ga0137364_10009232	All Organisms → cellular organisms → Bacteria	5539	Open in IMG/M
3300012198\|Ga0137364_10202388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1455	Open in IMG/M
3300012206\|Ga0137380_11468603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	566	Open in IMG/M
3300012285\|Ga0137370_10434036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	799	Open in IMG/M
3300012351\|Ga0137386_10736812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	708	Open in IMG/M
3300012912\|Ga0157306_10481578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300012913\|Ga0157298_10421630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300012938\|Ga0162651_100049008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	662	Open in IMG/M
3300012957\|Ga0164303_10558775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300012958\|Ga0164299_10216542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1119	Open in IMG/M
3300012960\|Ga0164301_10476978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	894	Open in IMG/M
3300012987\|Ga0164307_10467481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	945	Open in IMG/M
3300014321\|Ga0075353_1207307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300014325\|Ga0163163_10469260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1319	Open in IMG/M
3300014326\|Ga0157380_12939531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300014823\|Ga0120170_1021948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1764	Open in IMG/M
3300015077\|Ga0173483_10814285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300015077\|Ga0173483_10889836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300015358\|Ga0134089_10451034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300015374\|Ga0132255_106046698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300017944\|Ga0187786_10007041	All Organisms → cellular organisms → Bacteria	2649	Open in IMG/M
3300017947\|Ga0187785_10016139	All Organisms → cellular organisms → Bacteria	2602	Open in IMG/M
3300018000\|Ga0184604_10364985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
3300018032\|Ga0187788_10246331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	707	Open in IMG/M
3300018053\|Ga0184626_10058663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1615	Open in IMG/M
3300018053\|Ga0184626_10219182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	803	Open in IMG/M
3300018074\|Ga0184640_10443435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300018465\|Ga0190269_10296394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	940	Open in IMG/M
3300018466\|Ga0190268_10886926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	691	Open in IMG/M
3300018466\|Ga0190268_10949440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300018469\|Ga0190270_12665947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300018482\|Ga0066669_10607877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	959	Open in IMG/M
3300018920\|Ga0190273_11615532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300019249\|Ga0184648_1048410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300019356\|Ga0173481_10099618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1115	Open in IMG/M
3300019362\|Ga0173479_10043972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1429	Open in IMG/M
3300019884\|Ga0193741_1071921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	889	Open in IMG/M
3300020005\|Ga0193697_1011613	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300020020\|Ga0193738_1050327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1258	Open in IMG/M
3300021078\|Ga0210381_10151732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	786	Open in IMG/M
3300021445\|Ga0182009_10391646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300022195\|Ga0222625_1087149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	922	Open in IMG/M
3300022195\|Ga0222625_1836065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1981	Open in IMG/M
3300022534\|Ga0224452_1021483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1802	Open in IMG/M
3300025922\|Ga0207646_10109376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2480	Open in IMG/M
3300025927\|Ga0207687_10271911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1355	Open in IMG/M
3300025932\|Ga0207690_10428288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1060	Open in IMG/M
3300025933\|Ga0207706_11068559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassobaculaceae → Thalassobaculum	676	Open in IMG/M
3300025935\|Ga0207709_10055135	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300025936\|Ga0207670_11371176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300025944\|Ga0207661_11470302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	625	Open in IMG/M
3300025986\|Ga0207658_10557756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300027006\|Ga0209896_1001654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2021	Open in IMG/M
3300027056\|Ga0209879_1001274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3357	Open in IMG/M
3300027882\|Ga0209590_10664125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	668	Open in IMG/M
3300027956\|Ga0209820_1179069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	590	Open in IMG/M
3300028587\|Ga0247828_10747968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300028708\|Ga0307295_10078059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	877	Open in IMG/M
3300028722\|Ga0307319_10208822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	639	Open in IMG/M
3300028744\|Ga0307318_10026670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1874	Open in IMG/M
3300028755\|Ga0307316_10021982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2043	Open in IMG/M
3300028778\|Ga0307288_10393173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300028782\|Ga0307306_10220875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300028803\|Ga0307281_10126931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	879	Open in IMG/M
3300028807\|Ga0307305_10151278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1071	Open in IMG/M
3300028878\|Ga0307278_10365036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300028881\|Ga0307277_10210272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	854	Open in IMG/M
3300028885\|Ga0307304_10092063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1198	Open in IMG/M
3300028885\|Ga0307304_10289015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300030905\|Ga0308200_1002123	All Organisms → cellular organisms → Bacteria	2310	Open in IMG/M
3300031094\|Ga0308199_1003501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1964	Open in IMG/M
3300031096\|Ga0308193_1020184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	851	Open in IMG/M
3300031547\|Ga0310887_10455042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	764	Open in IMG/M
3300031576\|Ga0247727_10413863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1082	Open in IMG/M
3300031943\|Ga0310885_10141122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1143	Open in IMG/M
3300032013\|Ga0310906_11119584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	570	Open in IMG/M
3300032013\|Ga0310906_11322914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300033004\|Ga0335084_11708386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300033233\|Ga0334722_10270365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1244	Open in IMG/M
3300033550\|Ga0247829_10753383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	811	Open in IMG/M
3300033803\|Ga0314862_0057443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	850	Open in IMG/M
3300034176\|Ga0364931_0109472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	878	Open in IMG/M
3300034659\|Ga0314780_162451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.16%
Host-Associated	Host-Associated	19.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.25%
Plants	Host-Associated → Plants	19.84%
Aquatic	Environmental → Aquatic	11.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.87%
Freshwater	Environmental → Aquatic → Freshwater	7.14%
Sediment	Environmental → Aquatic → Sediment	4.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.17%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.59%
Cave	Environmental → Terrestrial → Cave	0.79%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.56%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.97%
Sand	Environmental → Terrestrial → Soil → Sand	2.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.38%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.59%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.79%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.97%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.38%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.38%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.97%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.38%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.38%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.79%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.79%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.79%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003152	Freshwater sediment microbial communities from Loktak Lake, India	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014823	Permafrost microbial communities from Nunavut, Canada - A3_80cm_0M	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027006	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1034046882	3300001431	Soil	VKIIVRDRARGFIRERGGKVWVWLDPRRGLVGSYVWLEAHAEAPGSSRRSKFTRASRRPH
JGI24751J29686_100705371	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	MRIVTSPKAAVXIGQHGGXVWVWLDPHRAVVGSFVWLEAHCEPPRSSRRTKFTRASRRPHTFK
Ga0052254_10446881	3300003152	Sediment	MKIVTSSKADAFIRERGGKVWVWLDPRRGLVGSFVWLEAHTEAPRSSRRSSLTRSSRRPHRFRQLESEGIEIH
Ga0062593_1007813302	3300004114	Soil	LHGGVKVVTTPKAEAFIRERGGKVWVWLDPRRGLVGSYVWLETHCEPPGSSRKSKFTRSSKR
Ga0063356_1002729551	3300004463	Arabidopsis Thaliana Rhizosphere	MKIVTSEKASAFIDERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDDLTV
Ga0062594_1033335301	3300005093	Soil	MADMKIVVTPRALAFIAERGGSVWVWLDPRRGPVGSYVWLEAHCEPPRTTRRSSFTRSSRRPHRFKQAE
Ga0066820_10177931	3300005160	Soil	MKIVTSPRAAAFIAERGGAAWVWLDPRRGLVGSFVWLEAHTEAPRSSRRSSFTRSSRRPHRFQEQDAD
Ga0066810_100687311	3300005169	Soil	VKIVTTPRATDYIRDSGGSVWVWLDPHRGLVGSHVWLEAHCEPPRSSRRTTFTRASRRPHRFQKIEQDGLVI
Ga0066685_105479252	3300005180	Soil	MRIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRRSSFTRSSRRPHRFRALESDGLTVHYDWGRLDPPDELHF
Ga0065707_104645412	3300005295	Switchgrass Rhizosphere	MRIVTSPRAASYIGQHGGAVWVWLDPHRALVGSYVWLEAHCEPPRTSRRTKFTRASRRPHRFQRIEQDGLEI
Ga0070692_100992231	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MRIVTTAKAAEYIGANGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEQDGLVL
Ga0070668_1014728161	3300005347	Switchgrass Rhizosphere	MRIVTSPKAAAYIGEHGGSVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRRPHRFKRIEQDGLEIHYDF
Ga0070659_1004490881	3300005366	Corn Rhizosphere	MRILTSPRAAAYIGEHGGAVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRRPHRFKRIEL
Ga0068867_1019753272	3300005459	Miscanthus Rhizosphere	MKLVVSERARSYIAERGGKVWVWLDPHRGIVGSYVWLEAHAEAPGSSRRSKFTRASRRPHRFHRLETEGVELHFDFGGMDPPDELHLD
Ga0070695_1016157982	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VKVVATPRAAEFVAERGGKVWVWLDPRRGLVGSYVWLEAHCEPPGSTKRSSFTRSSKRPHRFR
Ga0070704_1008616291	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTGMKVVTSKSASAFIDERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRPHRFKTLGSDGLTVHYDWGRLD
Ga0066700_105884791	3300005559	Soil	MKIVTSEEASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSTRRSSFTRSSRRPHRFRALESDGLT
Ga0074047_118386162	3300006576	Soil	MKIVTSPRAAAFIAERGGAAWVWLDPRRGLVGSFVWLEAHTEAPRSSRRSSFTRSSRRPHRFQ
Ga0075430_1017026481	3300006846	Populus Rhizosphere	MRILTSPRAAAYIGEHGGAVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRRPH
Ga0075433_116462431	3300006852	Populus Rhizosphere	MTGMKVVTSKSASAFIDERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSR
Ga0075425_1001804363	3300006854	Populus Rhizosphere	MEIVTSPTAAAYIAEHGGSVWVWLDPHRGLVGSYIWLEAHIEPPRSSRKTKFTRASRRPHRFTELEHDDMTVHYDFGRM
Ga0079217_108041371	3300006876	Agricultural Soil	MKLVVSERAAAYIAERGGAAWVWLDPHRGLVGSHIYLEAHAEPPRTSRRTSFTRSSRRPHRFETMTAEGITVHHDFGRLDPPEELHL
Ga0075429_1002383312	3300006880	Populus Rhizosphere	MRIVTTAKAAEYIGANGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEQD
Ga0075424_1015299922	3300006904	Populus Rhizosphere	MDIVTSAKAAAYIAEHGGSVWVWLDPHRGIVGSYIWLEAHAEPPRTSRKTKFTRASRRPHRFKQTERDGMVV
Ga0074063_134601961	3300006953	Soil	MKIVTSPRAAAFIAERGGAAWVWLDPRRGLVGSFVWLEAHTEAPRSSRRSSFTRSSRRPHRFQEQDADGVT
Ga0105098_100127541	3300009081	Freshwater Sediment	VRIVTTSRAAEYIAESGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHRFRWIEQDGIVVNYDFGNMSEPEE
Ga0075418_111104452	3300009100	Populus Rhizosphere	MSPDTSSIELVVSDRARTYIAERGGAVWVWLDPHRGIVGSHTYLEAHAQPPRTSLTTKFTRASRRPHRFRRLD
Ga0066709_1022307091	3300009137	Grasslands Soil	MKIVTTPPAAKYIAENGGKVWVWLDPRRGLVGSYVWLEAHTEPPGTSRETKFTRSSR
Ga0111538_104326091	3300009156	Populus Rhizosphere	MSADMSSIELVVSDRARTYIAERGGAVWVWLDPHRGIVGNHTYLEAHAQPPRTSLTTKFTRASRRPHRFRRLDADGLTVHYDFGRMEPPEELHLDRKGWRK
Ga0111538_112774411	3300009156	Populus Rhizosphere	MEIVTSPKAAAYIAEHGGSVWVWLDPHRGLVGSYIWLEAHTEPPRTSRKTKFTRASRRPHGFRELEWEGMTVHYDFGRMEPPEELHFELKGWRK
Ga0111538_136326912	3300009156	Populus Rhizosphere	MSAGTRSIELVVSDRARAYITERGGAVWIWLDPHRGVVGNHTYLEAHAEPPRSSLTTKFTRASRRPHRFHRLEADGLTVHYDFGRMESPEELHLDRKGWRKG
Ga0105092_102005101	3300009157	Freshwater Sediment	VRIVTSRRADAYIRERGGKVWVWLDPHRGLVGSYVWLEAHCEPPRTSLKTKFTRASRRPHRFTQLEQDGLVLHHDFGRMEPPEELHLDRKGWR
Ga0075423_121823091	3300009162	Populus Rhizosphere	MTGMKVVTSKSASAFIDERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRPHRFKTLGSDGLTVHYDWGRLDPPEELHFDVK
Ga0105249_109085601	3300009553	Switchgrass Rhizosphere	MMDMKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRPHRFKTLGSDGL
Ga0105249_122632771	3300009553	Switchgrass Rhizosphere	MRIVTSPKAAAYIGEHGGSVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRRPHRFKQIE
Ga0105252_103703122	3300009678	Soil	MKIVTSPRAAAYIGEHGGSVWVWLDPHRAFVGSYVWLEAHCEPPRSSRRSKFTRASRRPHTFKRLEQDGRVIHYSF
Ga0105072_10076352	3300009818	Groundwater Sand	MKIVMTPRADDFVRASGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHRFRTVGHDGVVLHYDFGNMTEPEELHL
Ga0126309_100587112	3300010039	Serpentine Soil	MKLVISDKAMSFIRDRGGSVWVWLDPHRGLVGSHIWLEAHAEPPRSSRRTKFTRSSRRSHRFRELEGKGITV
Ga0126382_105343752	3300010047	Tropical Forest Soil	MQIVISPRAAAYIAEHGGSVWVWLDPHRALVGSFIWLEAHAEPPRTSRQTKFTRASRRPHRFKELEHDGMTVHYDFGRQDPPEEL
Ga0134080_103177172	3300010333	Grasslands Soil	MRIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRTSRQSSFTRSSRRPHRFRALESDGLTVH
Ga0134123_105901872	3300010403	Terrestrial Soil	MKIVTTARAAEYIGANGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRR
Ga0134123_120771562	3300010403	Terrestrial Soil	MKLVVSERARSYIAERGGKVWVWLDPHRGIVGSYVWLEAHAEAPGSSRRSKFTRASRRPHRFHRLETEGVELHFDFGGMDLP
Ga0138514_1000202901	3300011003	Soil	MKIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTVHYDWGRLDPPEELHFD
Ga0137364_100092325	3300012198	Vadose Zone Soil	MVDMKVVTSERASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRQSSFTRSSRRSHRFKTLGSDGLTIHY
Ga0137364_102023881	3300012198	Vadose Zone Soil	MKIVTTPPAAKYIAENGGKVWVWLDPRRGLVGSYVWLEAHTQPPGTSRETKFTRSSRRPHRFATIEADGIE
Ga0137380_114686031	3300012206	Vadose Zone Soil	VFGSLLSCHHRLVKIVVSPKAAALVNERGGHVWVWLDPRRGLVGSYVWLEAHCEAPGSSKRSSFTRSSRRPHRFRVTEGERITV
Ga0137370_104340361	3300012285	Vadose Zone Soil	MKIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRTSRQTSFTRSSRRPHRFRAL
Ga0137386_107368122	3300012351	Vadose Zone Soil	MVDMKVVTSERASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRQSSFTRSSRRSHRFKTLGSDGLTIHYDWGRLDPPDELHFDVKGWRK
Ga0157306_104815782	3300012912	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEAPRSSRRSGFTRSSR
Ga0157298_104216302	3300012913	Soil	MADMKIVVTPKAQAFIAERGGSVWVWLDPRRGPVGSYVWLEAHCEPPRTSRRSSFTRSSRRPHRFKRAEGEGVSV
Ga0162651_1000490082	3300012938	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKSLGSDGLTVHYDWGRLDPPEELHF
Ga0164303_105587751	3300012957	Soil	MKVVTSEKAFAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTR
Ga0164299_102165421	3300012958	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEAPRSSRRSGFTRSSRRTHRFKTLGSDGL
Ga0164301_104769781	3300012960	Soil	VLSAKASAFIAEHGGEVWVWLDPRRGLIGSFIWLEAHCDPPGSTRQTRFTRSSRRPHRFTTLAG
Ga0164307_104674812	3300012987	Soil	MKVVTSEKAFAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTL
Ga0075353_12073072	3300014321	Natural And Restored Wetlands	MRIVTTERAETYIRDHGGKVWVWLDPHRGIVGSHVWLEAHCEPPRTSRRTKFTRASRRPHRFATMQADGVELHYDFGRVDPPDEL
Ga0163163_104692601	3300014325	Switchgrass Rhizosphere	MRIVTSPKAASYIGQHGGAVWVWLDPHRALVGSYVWLEAHCEPPRTSRRTKFTRASRRPHRFQRIDQDGLEIHYDFRRMHAPEELHLDRKGWR
Ga0157380_129395312	3300014326	Switchgrass Rhizosphere	MTGMKVVTSKSASAFIDERGGEVWVWLNPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSR
Ga0120170_10219481	3300014823	Permafrost	MKIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRSSRRSSFTRSSRRPHRFRALECDG
Ga0173483_108142852	3300015077	Soil	MADMKIVVTPKAQAFIAERGGSVWVWLDPRRGPVGSYVWLEAHCEPPRTTRRSSFTRSSRRPHRFKRAESEG
Ga0173483_108898362	3300015077	Soil	VKIVTTAKAAEYIGAKGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEEDGLVLHYDFGNL
Ga0134089_104510341	3300015358	Grasslands Soil	MRIVTSEKASAFIGERGGQVWVWLDPRRGLVGSFVWLEAHCEPPRTSRQTSFTRSSRRPHRFRALESDGLTVHYDWGRLDPPDELH
Ga0132255_1060466982	3300015374	Arabidopsis Rhizosphere	MKIVTTPAADAFIAERGGRVWVWLDPRRGLVGSYVWLEAHCEPPGSSRRSKFTQSSRRPHRFTVQP
Ga0187786_100070413	3300017944	Tropical Peatland	MPIKLVTTDKAAAFIAERGGEAWVWLDPRRGLVGSFVWLEAHTESPRSSRRSSFTRSSRRPHRFDTIEGDGVTVHFDHGRLDPPEELHLDV
Ga0187785_100161391	3300017947	Tropical Peatland	MKIVTSERAAAFIRERGGAVWVWLDPHRGIVGSFVWLEAHPEPPRASRRTSFTRSSRRP
Ga0184604_103649852	3300018000	Groundwater Sediment	MRLVVSERAAAYIAERGGSAWVWLDPHRGLVGSHIYLEAHAEPPRTSRRTSFTRSSRRPHRFESMSAEGITLHY
Ga0187788_102463311	3300018032	Tropical Peatland	MKIVTSPKASAFIAERGGDVWVWLDPRRGLVGSFVWLEAHTEAPLSSRRSSFTRSSR
Ga0184626_100586632	3300018053	Groundwater Sediment	MRIVTTPRATEYIQEQGGSVWVWLDPHRGLVGSHVWLEAHPEPPRSSRRTKFTRASRRPHGFRRIEQDGIVVNYDFGNMNEPEELHL
Ga0184626_102191822	3300018053	Groundwater Sediment	MKIVTTAKAAEYIGANGGEVWVWLDPHRGVVGSHVWLETHCEPPRSSRRSTFTRASR
Ga0184640_104434351	3300018074	Groundwater Sediment	MKIVTSARAESYIHENGGAVWVWLDPHRGIVGAHIWLEAHCEPPRTSRRTKFTRASRRPHRFRTLEHDGIVVNYDLGRMD
Ga0190269_102963941	3300018465	Soil	MKIVTTAKAAEYIGANGGEVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEQDGLVLHYDFGNLSEPEELHVDRKG
Ga0190268_108869261	3300018466	Soil	MKIVTTAKAAEYIGANGGEVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASR
Ga0190268_109494401	3300018466	Soil	VRIVTTTRAVEYIRESGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHGFRRVEQDGIVVNYDFGNMAEPE
Ga0190270_126659471	3300018469	Soil	MKLVVSERAAAYIAERGGSAWVWLDPHRGLVGSHIWLEAHAEPPRASRRTSFTRSSRRPHRFETMTAEGITLHYDFGRME
Ga0066669_106078771	3300018482	Grasslands Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTVHYDWGRLDPPDELHFDVKG
Ga0190273_116155321	3300018920	Soil	MRLIVSEKARAFIAERGGAVWVWLDPRRGVVGSYVWLEAHPEAPRSSRRSSFTRSS
Ga0184648_10484102	3300019249	Groundwater Sediment	MGSVRIVTSRRADAYIRERGGKVWVWLDPHRGLVGSYVWLEAHCEPPRTSLKTKFTRASRRPHRFTQLEQDGLVL
Ga0173481_100996181	3300019356	Soil	MEIVTSPKAAAYIAEHGGSVWVWLDPHRGLVGSYIWLEAHTEPPRTSRKTKFTRASRRPHGFRELEWEGMTVHYDF
Ga0173479_100439722	3300019362	Soil	MMDMKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRAHRFKTLGSDGL
Ga0193741_10719211	3300019884	Soil	MMKLVVSERAAAYIAERGGAAWVWLDPHRGLVGSHIWLEAHAEPPRTSRRTKFTRSSRRPHRFRELEGEGITVHYDFG
Ga0193697_10116133	3300020005	Soil	MRIVTSPKAAVYIGEHGGSVWVWLDPHRGLVGSHVWLEAHCEPPRSSRRTKFTRASRRPHRFKQIEQDGVAIHYDFGR
Ga0193738_10503271	3300020020	Soil	VKIVTTTRAAQYIRESGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHRFRQIEQNGLVVNYDFGNMNEPEELHLDRKGWR
Ga0210381_101517321	3300021078	Groundwater Sediment	MRIVTTARAAEYIGANGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEQD
Ga0182009_103916462	3300021445	Soil	VVLSPKARAWVVERGGEVWVWLDPRRGLVGSYVWLEAHCDPPGATRRTRFTRSSRQPHRFRTLRHDGITVHH
Ga0222625_10871491	3300022195	Groundwater Sediment	MRIVTTARAAEYIGANGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEQDGLVLHYDF
Ga0222625_18360651	3300022195	Groundwater Sediment	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKT
Ga0224452_10214831	3300022534	Groundwater Sediment	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTVHYDWGRLDPPEELHF
Ga0207646_101093761	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VRSWHHRFVKVVTSEKAASFIHERGDEVWVWLDPRRGLIGSYVWLEAHCEPPRTSRRSSFTRSSRRAHRFTSQEAGGITLHYAWGRL
Ga0207687_102719112	3300025927	Miscanthus Rhizosphere	MKLVVSERARSYIAERGGKVWVWLDPHRGIVGSYVWLEAHAEAPGSSRRSKFTRASRRPHRFHRLET
Ga0207690_104282882	3300025932	Corn Rhizosphere	MRLVVSERARSYIAERGGKVWVWLDPHRGIVGSYVWLEAHAEAPGSSRRSKFTRAS
Ga0207706_110685592	3300025933	Corn Rhizosphere	MKLVISEKARAYLEEHGGSAWVWLDPHRGIVGSYVWLEAHAEPPRSSRKTKFTRASRRPHRFRRLDAEGI
Ga0207709_100551353	3300025935	Miscanthus Rhizosphere	VKIVTTAKAAEYIGAKGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSLEQDGLVLHYDFGNLSEPEELHVE
Ga0207670_113711761	3300025936	Switchgrass Rhizosphere	MRIVTSPKAAVYIGQHGGAVWVWLDPHRALVGSYVWLEAHCEPPRTSRRTKFTRASRRP
Ga0207661_114703022	3300025944	Corn Rhizosphere	MRIVTSPKAAVYIGQHGGAVWVWLDPHRAVVGSFVWLEAHCEPPRSSRRTKFTRASRRPH
Ga0207658_105577561	3300025986	Switchgrass Rhizosphere	MTGMKVVTSKSASAFIDERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRAHRFKTLGSDGLTVHYDWGRLDPPEELHFDVKGW
Ga0209896_10016541	3300027006	Groundwater Sand	LAALVVRRAIIPTVRIVTTTRAARYIAESGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHGFRRIEQD
Ga0209879_10012741	3300027056	Groundwater Sand	MKIIMTPRADDFVRASGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHRFRTVEHDGVVLHYDF
Ga0209590_106641252	3300027882	Vadose Zone Soil	MSGMKIVTSPKTAGYIVEQGGKVWVWLDPRRGLVGSFVWLEAHTEPPGSSRQTKFTRSSRRPHRFATIEADGIEVHYDWGRLDPPDELL
Ga0209820_11790691	3300027956	Freshwater Sediment	VRIVTTTRAARYIAESGGAVWVWLDPHRGVVGSYVWLEAHPEPPRSSRRTKFTRASRRPHGFRRIEQDGIVVNYDF
Ga0247828_107479681	3300028587	Soil	MRIVTSPKAAAYIGEHGGSVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRRPHRFKQIEQDGLEIHYDFGRMHEPEELHLDRKGWR
Ga0307295_100780591	3300028708	Soil	MRIVTSPKAAAYIGEHGGSVWVWLDPHRGLVGSHVWLEAHCEPPRSSRRTKFTRASRRPH
Ga0307319_102088222	3300028722	Soil	MKIVTTAKAAEYIGANGGEVWVWLDPHRGVVGSHVWLETHCEPPRSSRRSTFTRASRRPHRF
Ga0307318_100266701	3300028744	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTVHYDWGRLDPPEELHFDVKGW
Ga0307316_100219823	3300028755	Soil	MRIVTTARAAEYIGANGGNVWVWLDPHRGIVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRSL
Ga0307288_103931731	3300028778	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLT
Ga0307306_102208751	3300028782	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTVHYDWGRLDPPEELHFDVKG
Ga0307281_101269311	3300028803	Soil	MRIVTSPKAAAYIGEHGGSVWVWLDPHRALVGSYVWLEAHCEPPRTSRRTKFTRASRRPHRFRRIEQ
Ga0307305_101512782	3300028807	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTVHYDWGRLDPPEELHFDV
Ga0307278_103650361	3300028878	Soil	MKIVTTPKAEEFIREQGGKVWVWLDPRRGLVGSYVWLEAHCAPPGATKRSSFTRSSKRPHLFKSLQAEG
Ga0307277_102102722	3300028881	Soil	MSFIRDHGGSVWVWLDPHRGIVGSHVWLEAHPEPPRASRKTSFTRSSRRPHRFRELEAAGISVHYDFGKMEPPEELHFDRKGW
Ga0307304_100920632	3300028885	Soil	MKLVISDRAMSFIRDHGGSVWVWLDPHRGIVGSHVWLEAHAQPPRASRKTSFTRSSRRPHRFRELEAAGISVHYDFGKMT
Ga0307304_102890151	3300028885	Soil	MEIVTTAKAAEYIGANGGEVWVWLDPHRGVVGSHVWLETHCEPPRSSRRSTFTRASRRPHRFRFLEQDGL
Ga0308200_10021233	3300030905	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLAGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSE
Ga0308199_10035012	3300031094	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLIGSYVWLEAHCDPPGATRQTRFTKSSRRPHRFTTIH
Ga0308193_10201842	3300031096	Soil	MKVVTSEKASAFIGERGGEVWVWLDPRRGLVGSYVWLEAHCEPPRSSRRSGFTRSSRRTHRFKTLGSDGLTLHYDWGRLDPPEELHFDVKGWRKA
Ga0310887_104550421	3300031547	Soil	MSGESRSIELVVSDRARTYIADRGGAAWVWLDPHRGLVGNHTWLEAHAEPPRSSRRSKFTRSSRRPHRFRQLQADGLTVHYDFGRMEPPEELHLDRKGWRRGT
Ga0247727_104138632	3300031576	Biofilm	MELVLTPKASEHIAAHGGEVWVWLDPHRGIVGSHIWLEAHCEAPRTSRRSKFTRSSRRPHRFRTLEHDALTLHYDF
Ga0310885_101411222	3300031943	Soil	MSGESRSIELVVSDRARTYIADRGGAAWVWLDPHRGLVGNHTWLEAHAEPPRSSRRSKFTRSS
Ga0310906_111195841	3300032013	Soil	MMKLVVSERAAAYIAERGGSAWVWLDPHRGLVGSHIYLEAHAEAPRTSRRSSFTRSSRRPHRFE
Ga0310906_113229141	3300032013	Soil	MRIVTSPKAAAYIGEHGGSVWVWLDPHRALVGSYVWLEAHCEPPRSSRRTKFTRASRR
Ga0335084_117083861	3300033004	Soil	MKIVTTERAAAFIRERGGAVWVWLDPHRGIVGSFVWLEAHAEPPRASSRSNFTRSSRRPH
Ga0334722_102703652	3300033233	Sediment	MKIVTSPAADAFIADRGGKVWVWLDPRRGLIGSYVWLEAHCDPPRSSRRTKFTMSSRRPHGFK
Ga0247829_107533831	3300033550	Soil	MRIITTPRAAEYIRESGGSVWVWLDPHRGIVGSHVWLEAHCEPPRSSRRTKFTVASRRPHTFKRIEQDGVVVNYAFGNLTEPD
Ga0314862_0057443_606_848	3300033803	Peatland	MCAFPDPVRRDSMADMKIVASPRASRYIADHGGHVWVWLDPRRGLVGSFVWLEAHTEPPRSSRETSFTRSSRQPHRFHRIE
Ga0364931_0109472_618_878	3300034176	Sediment	MGSVRIVTSRRADAYIRERGGKVWVWLDPHRGLVGSYIWLEAHCEPPRTSRKTKFTRASRRPHRFTQLEQDGLVLHHDFGRMEPPEE
Ga0314780_162451_2_304	3300034659	Soil	MSGESRSIELVVSDRARTYIADRGGAAWVWLDPHRGLVGNHTWLEAHAEPPRSSRRSKFTRSSRRPHRFRQLEADGLTVHYDFGRMDPPEELHLDRKGWRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067216

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences