Metagenome / Metatranscriptome Family F067145

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F067145
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	43 residues
Representative Sequence	PADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Number of Associated Samples	121
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.59 %
% of genes near scaffold ends (potentially truncated)	97.62 %
% of genes from short scaffolds (< 2000 bps)	86.51 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (65.873 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.254 % of family members)
Environment Ontology (ENVO)	Unclassified (42.857 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.794 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.90% β-sheet: 0.00% Coil/Unstructured: 79.10%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF02811	PHP	22.22
PF03786	UxuA	10.32
PF07733	DNA_pol3_alpha	8.73
PF00903	Glyoxalase	7.94
PF00441	Acyl-CoA_dh_1	7.14
PF02771	Acyl-CoA_dh_N	4.76
PF12681	Glyoxalase_2	3.17
PF01557	FAA_hydrolase	2.38
PF12802	MarR_2	2.38
PF02770	Acyl-CoA_dh_M	1.59
PF08386	Abhydrolase_4	1.59
PF14579	HHH_6	1.59
PF07167	PhaC_N	0.79
PF13359	DDE_Tnp_4	0.79
PF13556	HTH_30	0.79
PF09900	DUF2127	0.79
PF12535	Nudix_N	0.79
PF06081	ArAE_1	0.79
PF03633	Glyco_hydro_65C	0.79
PF13469	Sulfotransfer_3	0.79
PF07883	Cupin_2	0.79
PF02021	UPF0102	0.79
PF03793	PASTA	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	13.49
COG1312	D-mannonate dehydratase	Carbohydrate transport and metabolism [G]	10.32
COG0587	DNA polymerase III, alpha subunit	Replication, recombination and repair [L]	8.73
COG2176	DNA polymerase III, alpha subunit (gram-positive type)	Replication, recombination and repair [L]	8.73
COG0792	Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family	Replication, recombination and repair [L]	0.79
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.79
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.79
COG4129	Uncharacterized membrane protein YgaE, UPF0421/DUF939 family	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.87 %
Unclassified	root	N/A	34.13 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.87 %
Unclassified	root	N/A	34.13 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.87 %
Unclassified	root	N/A	34.13 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.52 %
Unclassified	root	N/A	34.13 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59.52 %
Unclassified	root	N/A	34.13 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	47.62 %
Unclassified	root	N/A	34.13 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.13 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.38 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.38 %
Nakamurellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales	0.79 %
Treponemataceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae	0.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.13 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.38 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.38 %
Nakamurellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae	0.79 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.79 %
Treponema	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema	0.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.13 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.38 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.38 %
unclassified Treponema	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema	0.79 %
Nakamurella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella	0.79 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.13 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.38 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.38 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.79 %
Nakamurella lactea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea	0.79 %
Treponema sp.	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp.	0.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.13 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.38 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.38 %
Pseudonocardia sp. Ae717_Ps2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. Ae717_Ps2	0.79 %
Nakamurella lactea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea	0.79 %
Treponema sp.	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp.	0.79 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_103439089	Not Available	696	Open in IMG/M
3300002075\|JGI24738J21930_10138045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300005335\|Ga0070666_10870018	Not Available	665	Open in IMG/M
3300005337\|Ga0070682_101215862	Not Available	636	Open in IMG/M
3300005339\|Ga0070660_101566181	Not Available	561	Open in IMG/M
3300005347\|Ga0070668_100220309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1565	Open in IMG/M
3300005356\|Ga0070674_101132775	Not Available	692	Open in IMG/M
3300005437\|Ga0070710_10669330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	729	Open in IMG/M
3300005457\|Ga0070662_100029075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3854	Open in IMG/M
3300005543\|Ga0070672_100590426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	967	Open in IMG/M
3300005544\|Ga0070686_100014401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4560	Open in IMG/M
3300005574\|Ga0066694_10446124	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005577\|Ga0068857_100047498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → Nakamurella lactea	3811	Open in IMG/M
3300005764\|Ga0066903_108569121	Not Available	521	Open in IMG/M
3300006163\|Ga0070715_10690272	Not Available	608	Open in IMG/M
3300006163\|Ga0070715_10884726	Not Available	548	Open in IMG/M
3300006237\|Ga0097621_100075554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2793	Open in IMG/M
3300006573\|Ga0074055_11433138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300006575\|Ga0074053_11988428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1002	Open in IMG/M
3300006797\|Ga0066659_11743994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	526	Open in IMG/M
3300006804\|Ga0079221_10453474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	815	Open in IMG/M
3300006806\|Ga0079220_10073005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1697	Open in IMG/M
3300006852\|Ga0075433_10834657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	805	Open in IMG/M
3300006871\|Ga0075434_102563907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300009011\|Ga0105251_10012339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4838	Open in IMG/M
3300009036\|Ga0105244_10136564	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300009098\|Ga0105245_10795598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	983	Open in IMG/M
3300009162\|Ga0075423_12496941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300009177\|Ga0105248_11982012	Not Available	661	Open in IMG/M
3300009545\|Ga0105237_11999870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300009553\|Ga0105249_10509299	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300010329\|Ga0134111_10149474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	923	Open in IMG/M
3300010359\|Ga0126376_10764061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	939	Open in IMG/M
3300010362\|Ga0126377_12672139	Not Available	574	Open in IMG/M
3300010375\|Ga0105239_11916580	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300010376\|Ga0126381_101492002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	977	Open in IMG/M
3300010396\|Ga0134126_13054705	Not Available	505	Open in IMG/M
3300010398\|Ga0126383_11452440	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300010399\|Ga0134127_12495786	Not Available	597	Open in IMG/M
3300012203\|Ga0137399_10265090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1412	Open in IMG/M
3300012210\|Ga0137378_10291758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1517	Open in IMG/M
3300012353\|Ga0137367_10483350	Not Available	873	Open in IMG/M
3300012359\|Ga0137385_10017145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6456	Open in IMG/M
3300012360\|Ga0137375_10312999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1413	Open in IMG/M
3300012492\|Ga0157335_1002992	Not Available	1056	Open in IMG/M
3300012957\|Ga0164303_11466224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300012958\|Ga0164299_10051982	All Organisms → cellular organisms → Bacteria	1920	Open in IMG/M
3300012961\|Ga0164302_10906341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	677	Open in IMG/M
3300013102\|Ga0157371_10248905	Not Available	1279	Open in IMG/M
3300013104\|Ga0157370_11993867	Not Available	520	Open in IMG/M
3300013105\|Ga0157369_11741250	Not Available	633	Open in IMG/M
3300013296\|Ga0157374_11490480	Not Available	700	Open in IMG/M
3300013307\|Ga0157372_11026098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	955	Open in IMG/M
3300014325\|Ga0163163_10596140	Not Available	1168	Open in IMG/M
3300015264\|Ga0137403_10144152	Not Available	2352	Open in IMG/M
3300015371\|Ga0132258_10611683	Not Available	2736	Open in IMG/M
3300015373\|Ga0132257_102023136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. Ae717_Ps2	743	Open in IMG/M
3300015373\|Ga0132257_102573522	Not Available	662	Open in IMG/M
3300015374\|Ga0132255_102451423	Not Available	797	Open in IMG/M
3300016294\|Ga0182041_11178025	Not Available	698	Open in IMG/M
3300017792\|Ga0163161_10239063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1412	Open in IMG/M
3300017947\|Ga0187785_10622172	Not Available	557	Open in IMG/M
3300020140\|Ga0179590_1031916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1299	Open in IMG/M
3300020579\|Ga0210407_10387649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1093	Open in IMG/M
3300020581\|Ga0210399_11459400	Not Available	532	Open in IMG/M
3300021178\|Ga0210408_10155221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1813	Open in IMG/M
3300021403\|Ga0210397_10128335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1748	Open in IMG/M
3300021403\|Ga0210397_10293810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1191	Open in IMG/M
3300021404\|Ga0210389_10705722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	790	Open in IMG/M
3300021478\|Ga0210402_10470321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1167	Open in IMG/M
3300021560\|Ga0126371_11997730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300024325\|Ga0247678_1003443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2113	Open in IMG/M
3300025735\|Ga0207713_1134725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300025898\|Ga0207692_10028050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2658	Open in IMG/M
3300025899\|Ga0207642_10040417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2035	Open in IMG/M
3300025904\|Ga0207647_10032275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3366	Open in IMG/M
3300025907\|Ga0207645_10174035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1411	Open in IMG/M
3300025914\|Ga0207671_10409816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1078	Open in IMG/M
3300025917\|Ga0207660_10342172	Not Available	1197	Open in IMG/M
3300025918\|Ga0207662_10909343	Not Available	623	Open in IMG/M
3300025926\|Ga0207659_10599096	Not Available	939	Open in IMG/M
3300025932\|Ga0207690_10186077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1567	Open in IMG/M
3300025933\|Ga0207706_10031186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4750	Open in IMG/M
3300025934\|Ga0207686_11411402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300025935\|Ga0207709_11089444	Not Available	656	Open in IMG/M
3300025936\|Ga0207670_10389800	Not Available	1111	Open in IMG/M
3300025940\|Ga0207691_10025646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5533	Open in IMG/M
3300025940\|Ga0207691_10221873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1639	Open in IMG/M
3300025960\|Ga0207651_10179217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1679	Open in IMG/M
3300025961\|Ga0207712_11098561	Not Available	708	Open in IMG/M
3300025981\|Ga0207640_11382857	Not Available	630	Open in IMG/M
3300026088\|Ga0207641_10032137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4357	Open in IMG/M
3300026089\|Ga0207648_10066461	All Organisms → cellular organisms → Bacteria	3144	Open in IMG/M
3300026475\|Ga0257147_1007808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1372	Open in IMG/M
3300026538\|Ga0209056_10431316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	775	Open in IMG/M
3300027371\|Ga0209418_1029071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	951	Open in IMG/M
3300027884\|Ga0209275_10446346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	733	Open in IMG/M
3300028138\|Ga0247684_1006695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1804	Open in IMG/M
3300028138\|Ga0247684_1073733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300028711\|Ga0307293_10056595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1222	Open in IMG/M
3300028881\|Ga0307277_10032144	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2093	Open in IMG/M
3300028906\|Ga0308309_11183616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	659	Open in IMG/M
3300030730\|Ga0307482_1180296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300031564\|Ga0318573_10060491	Not Available	1871	Open in IMG/M
3300031640\|Ga0318555_10131391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1335	Open in IMG/M
3300031668\|Ga0318542_10358171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	751	Open in IMG/M
3300031718\|Ga0307474_10679557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	813	Open in IMG/M
3300031720\|Ga0307469_10898877	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Treponemataceae → Treponema → unclassified Treponema → Treponema sp.	820	Open in IMG/M
3300031724\|Ga0318500_10203579	Not Available	949	Open in IMG/M
3300031740\|Ga0307468_100281425	Not Available	1194	Open in IMG/M
3300031771\|Ga0318546_11207993	Not Available	531	Open in IMG/M
3300031796\|Ga0318576_10082580	Not Available	1446	Open in IMG/M
3300031799\|Ga0318565_10122691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1254	Open in IMG/M
3300031835\|Ga0318517_10424913	Not Available	600	Open in IMG/M
3300031890\|Ga0306925_11821495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	582	Open in IMG/M
3300031942\|Ga0310916_10990761	Not Available	702	Open in IMG/M
3300031954\|Ga0306926_11180754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	900	Open in IMG/M
3300032039\|Ga0318559_10317500	Not Available	724	Open in IMG/M
3300032044\|Ga0318558_10176788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1035	Open in IMG/M
3300032068\|Ga0318553_10348462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300032783\|Ga0335079_10430046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1418	Open in IMG/M
3300032892\|Ga0335081_10927274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300032893\|Ga0335069_12040467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	603	Open in IMG/M
3300032954\|Ga0335083_10302484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1405	Open in IMG/M
3300033004\|Ga0335084_11559546	Not Available	652	Open in IMG/M
3300033134\|Ga0335073_11263110	Not Available	734	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.90%
Host-Associated	Host-Associated	38.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.90%
Plants	Host-Associated → Plants	38.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.32%
Roots	Host-Associated → Plants → Roots	1.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.87%
Loam	Environmental → Terrestrial → Soil → Loam	11.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.17%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.59%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.14%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.59%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.59%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.17%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.38%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.38%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024325	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19	Environmental	Open in IMG/M
3300025735	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1034390891	3300001431	Soil	EQDGAPVNWGRVTVYEPEDCDERYRQYLEHAPRHTGPTLIPIQV*
JGI24738J21930_101380451	3300002075	Corn Rhizosphere	MATQQTDRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070666_108700182	3300005335	Switchgrass Rhizosphere	KTREEREQAQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070682_1012158621	3300005337	Corn Rhizosphere	TRQERARDQDGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070660_1015661812	3300005339	Corn Rhizosphere	RDQDGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070668_1002203091	3300005347	Switchgrass Rhizosphere	AQDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070674_1011327752	3300005356	Miscanthus Rhizosphere	ARTRQERARDQDGEPAARGRVTVYEPEDCDERYRQYLEHAPRYTGPTLIPIQV*
Ga0070710_106693301	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	DPAARGRVTIYEPEDCDARWRQHLERTPRRYTGPTLIPIQV*
Ga0070662_1000290751	3300005457	Corn Rhizosphere	QDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0070672_1005904261	3300005543	Miscanthus Rhizosphere	DGDPADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV*
Ga0070686_1000144011	3300005544	Switchgrass Rhizosphere	QDDDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0066694_104461242	3300005574	Soil	VPLSPQEPEPDDAPANRGRVTIYEPEDCDERYRQYLEQAPRYTGPKLIPIQV*
Ga0068857_1000474985	3300005577	Corn Rhizosphere	ADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPFQV*
Ga0066903_1085691211	3300005764	Tropical Forest Soil	EREHGGDPADRGRVTVYEPEDCDELIRQHLERAPRRIGPVLIPIQV*
Ga0070715_106902723	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	NAKTREERERAQDGDPADRGRVTIYEPEDCDERYRQYLEHAPRHTGPTLIPIQV*
Ga0070715_108847262	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RVTIYEPEDCDERYRQYLEHAPRYTGPTLIPFQV*
Ga0097621_1000755542	3300006237	Miscanthus Rhizosphere	DQGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0074055_114331381	3300006573	Soil	RGRVTIYEPEDWPERIRQYEAQTPRSFAPVLVPIPV*
Ga0074053_119884282	3300006575	Soil	DRGRVTVYEPEDWPERHRQYREHTPRRTGPTLIPIQV*
Ga0066659_117439941	3300006797	Soil	DAPATRGRVTIYEPEDCDERWHQHLERTPRRTGPTLIPIQV*
Ga0079221_104534741	3300006804	Agricultural Soil	ERERDPDGPPRGRVRIYEPEDCDERWRQYLERTPRRTGPTLIPIPV*
Ga0079220_100730051	3300006806	Agricultural Soil	RGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIPV*
Ga0075433_108346571	3300006852	Populus Rhizosphere	RVRIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV*
Ga0075434_1025639072	3300006871	Populus Rhizosphere	DRGRVTIYEPEDCDERYRQYLEDTPRYTGPTLIPIQV*
Ga0105251_100123391	3300009011	Switchgrass Rhizosphere	QDDEPAARGRVTVYEPEDCDERYRQYLERTPRYTGPTLIPIQV*
Ga0105244_101365641	3300009036	Miscanthus Rhizosphere	GQDGEPAARGRVTVYEPEDCDERYRQYCEDTPRRTGPTLIPIQV*
Ga0105245_107955982	3300009098	Miscanthus Rhizosphere	PADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0075423_124969412	3300009162	Populus Rhizosphere	PKSWGDDPATRGRVRIYEPEDCDERWRQHLERTPRRHTGPTLIPIQV*
Ga0105248_119820121	3300009177	Switchgrass Rhizosphere	EQAQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0105237_119998701	3300009545	Corn Rhizosphere	DPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0105249_105092992	3300009553	Switchgrass Rhizosphere	TSEEREQDGAPVIPGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0134111_101494741	3300010329	Grasslands Soil	GDLANGGQVRIYAPADCDERWRQHLERTPRRTGPTLIPIQV*
Ga0126376_107640611	3300010359	Tropical Forest Soil	TRHERDHDTDPAGRGRATVYEPEDCEILARQYLDHAPRHTGPVLIPIQV*
Ga0126377_126721392	3300010362	Tropical Forest Soil	ARRGHVTVYEPEDCEDLIRQYLEHAPRRTGPVLIPIQV*
Ga0105239_119165802	3300010375	Corn Rhizosphere	DRITIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL*
Ga0126381_1014920021	3300010376	Tropical Forest Soil	EREQGADPAHRDRVTVYEPEDCAELFRQYLEQAPPRTSPTLIPIQA*
Ga0134126_130547051	3300010396	Terrestrial Soil	TDEQKQADGDQDGDPADRGRVTIYEPEDWPERYRQYCENTPRRTGPTLIPIQV*
Ga0126383_114524403	3300010398	Tropical Forest Soil	PPSRGHVTVYEPEDCEERIRQYLEQAPRRTGPILIPVQV*
Ga0134127_124957861	3300010399	Terrestrial Soil	GAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL*
Ga0137399_102650901	3300012203	Vadose Zone Soil	ARTKEERDQDRDPGPRGRVRIYEPEDCDERWRQHLERTPRYTGPTLIPIQV*
Ga0137378_102917582	3300012210	Vadose Zone Soil	PRGRVTIYEPEDCDERYRQYLERTPRHTGPTPIPIQV*
Ga0137367_104833501	3300012353	Vadose Zone Soil	DGDPAGRGRVTVYEPEDWPERYRQYREHTPRRTGPTLIPIQV*
Ga0137385_100171451	3300012359	Vadose Zone Soil	REQGQDGDPAGRGRVTVYEPEDWPERYRQYREHTPRRTGPTLIPIQV*
Ga0137375_103129992	3300012360	Vadose Zone Soil	GRVTVYEPEDWPERYRQYREHTPRRTGPTLIPIQV*
Ga0157335_10029921	3300012492	Arabidopsis Rhizosphere	KSQNRQEPQRDQDSGPADRGRITVYEPEDCDERYRQYLERTPRRIGPTLIPIPV*
Ga0164303_114662241	3300012957	Soil	ERGQDGDPADRGRVTIYEPEDCDERYRQYLEHAPRRTGPTLIPIQV*
Ga0164299_100519823	3300012958	Soil	ARIKQERERDQDGEPAARGRVTVYEPEDCDERYRQYLEHAPRHTGPILIPIQV*
Ga0164302_109063412	3300012961	Soil	GHVTIYEPEGCDERYRQYLERTPRYTGPTLIPIQV*
Ga0157371_102489051	3300013102	Corn Rhizosphere	ADRGSVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0157370_119938671	3300013104	Corn Rhizosphere	GEPATRGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV*
Ga0157369_117412502	3300013105	Corn Rhizosphere	RVTIYEPEDCDERYRQYLEHAPRRSGLTLIPIQL*
Ga0157374_114904803	3300013296	Miscanthus Rhizosphere	DRGRVTIYEPEDCDERYRQYLEHAPRHTGPTLIPIQV*
Ga0157372_110260981	3300013307	Corn Rhizosphere	DRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV*
Ga0163163_105961402	3300014325	Switchgrass Rhizosphere	DGEPAARGRVTVYEPEDCDERYRQYLEHTPRHTGPILIPIQV*
Ga0137403_101441524	3300015264	Vadose Zone Soil	PRGRVRIYEPEDCDERYRQYLERTPRYTGPTLIPIRV*
Ga0132258_106116831	3300015371	Arabidopsis Rhizosphere	GVTVYEPEDCDELIRRYLEHAPRRTGPTLIPIPV*
Ga0132257_1020231362	3300015373	Arabidopsis Rhizosphere	GDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0132257_1025735221	3300015373	Arabidopsis Rhizosphere	EHGGDPPSRGGVTVYEPEDCDELIRRYLEHAPRRTGPTLIPIPV*
Ga0132255_1024514231	3300015374	Arabidopsis Rhizosphere	LAKQAQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV*
Ga0182041_111780252	3300016294	Soil	QGGDRASRGRVTVYEPEDCEKLIRQYLEQAPRRTGPVLIPIQV
Ga0163161_102390632	3300017792	Switchgrass Rhizosphere	RGQDGDPADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV
Ga0187785_106221722	3300017947	Tropical Peatland	AGRGDVTVYEPEDCDDLIRQYLEHAPRRTGPVQVPIQV
Ga0179590_10319161	3300020140	Vadose Zone Soil	NARTREERDQDRDPAPRGRVRIYEPEDCDERYRQYLERTPRYTGPTLIPIQV
Ga0210407_103876493	3300020579	Soil	GDPVARGRVTIYEPEDWPERIRQYEARTPRSFAPVQVPIQV
Ga0210399_114594001	3300020581	Soil	DRGRVTIYEPEDWPERIRQYEVRTPRSFAPVLVPIQV
Ga0210408_101552211	3300021178	Soil	GDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0210397_101283353	3300021403	Soil	AWGGDPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIPV
Ga0210397_102938101	3300021403	Soil	TSWGDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0210389_107057221	3300021404	Soil	DAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0210402_104703211	3300021478	Soil	PKSWGDAPATRGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0126371_119977301	3300021560	Tropical Forest Soil	GPADRRADVTVYEPEDCDVLVRQYLERAPRRTGPTLIPIQV
Ga0247678_10034432	3300024325	Soil	EERERAQDGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207713_11347251	3300025735	Switchgrass Rhizosphere	GRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV
Ga0207692_100280502	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PAARGRVTIYEPEDCDARWRQHLERTPRRYTGPTLIPIQV
Ga0207642_100404172	3300025899	Miscanthus Rhizosphere	PADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207647_100322754	3300025904	Corn Rhizosphere	PAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207645_101740351	3300025907	Miscanthus Rhizosphere	REERDRGQDDDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207671_104098161	3300025914	Corn Rhizosphere	NARTKEEEPEQDGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL
Ga0207660_103421721	3300025917	Corn Rhizosphere	GDPADRGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV
Ga0207662_109093432	3300025918	Switchgrass Rhizosphere	RGRVTIYEPEDCDERYRQYLEHTPRHTGPTLIPIQV
Ga0207659_105990962	3300025926	Miscanthus Rhizosphere	AQDDDPADRGSVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207690_101860771	3300025932	Corn Rhizosphere	GRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207706_100311865	3300025933	Corn Rhizosphere	ERARDQDGEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207686_114114022	3300025934	Miscanthus Rhizosphere	REQDGAPVIPGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIPV
Ga0207709_110894442	3300025935	Miscanthus Rhizosphere	AARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207670_103898002	3300025936	Switchgrass Rhizosphere	ARDQDGEPATRGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207691_100256461	3300025940	Miscanthus Rhizosphere	GDPADQGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207691_102218731	3300025940	Miscanthus Rhizosphere	ERERGQDGDPADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV
Ga0207651_101792171	3300025960	Switchgrass Rhizosphere	ARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207712_110985611	3300025961	Switchgrass Rhizosphere	SEEREQDGAPVIPGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207640_113828572	3300025981	Corn Rhizosphere	RGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207641_100321375	3300026088	Switchgrass Rhizosphere	GSVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0207648_100664611	3300026089	Miscanthus Rhizosphere	QDGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL
Ga0257147_10078081	3300026475	Soil	DQDGDPAARGRVTVYEPEDWPERIRQYEARTPRCFAPVLVPIQV
Ga0209056_104313161	3300026538	Soil	EQKQADRDQEGTPAARGRVTIYEPEDCDERYRQYLERAPRRTGPTLIPIQV
Ga0209418_10290711	3300027371	Forest Soil	QERERDQDSEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIPV
Ga0209275_104463461	3300027884	Soil	DGPARGRVRIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0247684_10066952	3300028138	Soil	DGDPADRGRVTIYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0247684_10737332	3300028138	Soil	PPRGRVRIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV
Ga0307293_100565952	3300028711	Soil	ADRGRVTIYEPEDWPERYRQYCEHTPRRTGPTLIPIQV
Ga0307277_100321443	3300028881	Soil	GEPAARGRVTVYEPEDCDERYRQYLEHTPRYTGPTLIPIQV
Ga0308309_111836161	3300028906	Soil	PRGRVRIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV
Ga0307482_11802962	3300030730	Hardwood Forest Soil	VVGLGGPDGPPRGRVTIYEPEDCDERWRQHLERTPRRYTGPTLIPIQV
Ga0318573_100604911	3300031564	Soil	TREEREQGGDRASRGRVTVYEPEDCEKLIRQYLEQAPRRTGPVLIPIQV
Ga0318555_101313911	3300031640	Soil	EKQQHPAGPADRRADVTVYEPEDCDERYRQYLEHAPRRTGPTLIPIQV
Ga0318542_103581711	3300031668	Soil	REDREHGDPADRGRVTVYEPEDCEELIRQYLEHAPRRTGPVLIPIQV
Ga0307474_106795572	3300031718	Hardwood Forest Soil	PATRGRVTIYEPEDCDERWRQHLERTPRRTGPTLIPIQV
Ga0307469_108988771	3300031720	Hardwood Forest Soil	ARTKEEPEQDGAPVNRGRVTIYEPEDCDERYRQYLEHAPRRSGPTLIPIQL
Ga0318500_102035791	3300031724	Soil	REDREQDRNDDPVDRGRVTVYEPEDCDDLIHQYLEQAPRRTGPTLVPIQV
Ga0307468_1002814251	3300031740	Hardwood Forest Soil	NARTREERDQDGEPAARGRVTVYEPEDCDERYRQYLEHAPRHTGPTLIPIQV
Ga0318546_112079931	3300031771	Soil	GRVTVYEPEDCDELIRQYLDHAPRRTGPTLIPIQV
Ga0318576_100825802	3300031796	Soil	GDRASRGRVTVYEPEDCEELIRQYLEQAPRRTGPVLIPIQV
Ga0318565_101226912	3300031799	Soil	IAQEKQEHPADRRADVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0318517_104249131	3300031835	Soil	GRVMVYEPEDCDDLIHQYLEQAPRRTGPTLVPIQV
Ga0306925_118214952	3300031890	Soil	ADRRADVTVYEPEDCNERYRQYLDHAPRRTGPTLIPIQV
Ga0310916_109907612	3300031942	Soil	HPAGPADRRADVTVYEPEDCDELVRQYLERAPRRTGPTLIPIQV
Ga0306926_111807542	3300031954	Soil	AGPADRRADVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0318559_103175001	3300032039	Soil	PADRGRVTVYEPEDCDDLIHQYLEQAPRRTGPTLIPIQV
Ga0318558_101767881	3300032044	Soil	ANARTREEREQGGDFAGRGQVTVYEPEDCEELIRQYLEQAPRRTGPVLIPIQV
Ga0318553_103484621	3300032068	Soil	QQHPAGTADRRADVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0335079_104300461	3300032783	Soil	TRDEPEQDGDPPSRDGVTVYEPDDCDKLIRQYLGHAPRRTGPTLIPIQA
Ga0335081_109272743	3300032892	Soil	PPGPADRRAGVTVYEPEDCDELIRQYLEQAPRRTGPTLIPIQV
Ga0335069_120404672	3300032893	Soil	GRGRVTVYEPQDCAERFRQYLGQAPRYTGPTLTPIQV
Ga0335083_103024844	3300032954	Soil	DSDPADRRAGVTVYEPEDCDERYRQYLERTPRRTGPTLIPIQV
Ga0335084_115595461	3300033004	Soil	GRGHVTVYEPEDCEILARQYLDHAPRHTGPTLIPIQV
Ga0335073_112631101	3300033134	Soil	QSGDPPSADSVTVYEPEDCDELIRQYLGHAPRRTGPTLVPIRV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067145

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences