Metagenome / Metatranscriptome Family F067024

Basic Information
Family ID	F067024
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	41 residues
Representative Sequence	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKV
Number of Associated Samples	110
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.21 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.06 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Most Common Taxonomy
Group	Bacteria (53.175 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.460 % of family members)
Environment Ontology (ENVO)	Unclassified (29.365 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.762 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.71% β-sheet: 0.00% Coil/Unstructured: 60.29%
Feature Viewer

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Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF02881	SRP54_N	3.97
PF13620	CarboxypepD_reg	1.59
PF00083	Sugar_tr	0.79
PF00376	MerR	0.79
PF07593	UnbV_ASPIC	0.79
PF08241	Methyltransf_11	0.79
PF13599	Pentapeptide_4	0.79
PF00210	Ferritin	0.79
PF02517	Rce1-like	0.79
PF01261	AP_endonuc_2	0.79
PF05167	DUF711	0.79
PF13517	FG-GAP_3	0.79
PF01909	NTP_transf_2	0.79
PF13604	AAA_30	0.79
PF01609	DDE_Tnp_1	0.79
PF05050	Methyltransf_21	0.79
PF13087	AAA_12	0.79
PF00486	Trans_reg_C	0.79
PF00535	Glycos_transf_2	0.79
PF13602	ADH_zinc_N_2	0.79
PF04357	TamB	0.79
PF00873	ACR_tran	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG2848	Uncharacterized conserved protein, UPF0210 family	Cell cycle control, cell division, chromosome partitioning [D]	0.79
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	0.79
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.79
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.79
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.79
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.79
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.79
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.79
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.17 %
Unclassified	root	N/A	46.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.17 %
Unclassified	root	N/A	46.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.17 %
Unclassified	root	N/A	46.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	19.05 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.59 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Acidobacteria bacterium 13_1_40CM_2_68_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_68_5	0.79 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.79 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.79 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.79 %
Acidobacteria bacterium 13_1_40CM_2_68_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_68_5	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Desulfuromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae	0.79 %
Eubacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Acidobacteria bacterium 13_1_40CM_2_68_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_68_5	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Eubacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium	0.79 %
Desulfuromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Acidobacteria bacterium 13_1_40CM_2_68_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_68_5	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.14 %
Desulfuromonas soudanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → Desulfuromonas soudanensis	0.79 %
Eubacterium callanderi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi	0.79 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Acidobacteria bacterium 13_1_40CM_2_68_5	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_68_5	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001172\|JGI12681J13546_1008106	Not Available	579	Open in IMG/M
3300001661\|JGI12053J15887_10188796	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300003372\|JGI26336J50218_1009518	Not Available	666	Open in IMG/M
3300004082\|Ga0062384_101148110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → Eubacterium callanderi	562	Open in IMG/M
3300005467\|Ga0070706_101448827	Not Available	628	Open in IMG/M
3300005537\|Ga0070730_10714429	Not Available	634	Open in IMG/M
3300005554\|Ga0066661_10858514	Not Available	531	Open in IMG/M
3300005566\|Ga0066693_10418261	Not Available	546	Open in IMG/M
3300006041\|Ga0075023_100132635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300006050\|Ga0075028_100708097	Not Available	607	Open in IMG/M
3300006173\|Ga0070716_101672099	Not Available	524	Open in IMG/M
3300006174\|Ga0075014_100753475	Not Available	571	Open in IMG/M
3300006914\|Ga0075436_100750904	Not Available	724	Open in IMG/M
3300009012\|Ga0066710_103056121	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300009088\|Ga0099830_11339653	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300009089\|Ga0099828_10036660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3993	Open in IMG/M
3300009137\|Ga0066709_101905006	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300009649\|Ga0105855_1164415	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300009662\|Ga0105856_1354499	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300010358\|Ga0126370_11774218	Not Available	596	Open in IMG/M
3300010359\|Ga0126376_12084963	Not Available	610	Open in IMG/M
3300010360\|Ga0126372_10667836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300010360\|Ga0126372_10914195	All Organisms → cellular organisms → Bacteria → Acidobacteria	881	Open in IMG/M
3300010360\|Ga0126372_12296322	Not Available	589	Open in IMG/M
3300010361\|Ga0126378_10727377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M
3300010366\|Ga0126379_10842323	All Organisms → cellular organisms → Bacteria → Acidobacteria	1018	Open in IMG/M
3300010376\|Ga0126381_101245443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300010376\|Ga0126381_101368253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300010376\|Ga0126381_104960601	Not Available	511	Open in IMG/M
3300010398\|Ga0126383_11715104	Not Available	717	Open in IMG/M
3300011269\|Ga0137392_10260883	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300011269\|Ga0137392_11253049	Not Available	600	Open in IMG/M
3300011270\|Ga0137391_10941951	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300012203\|Ga0137399_10290679	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300012205\|Ga0137362_10923267	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300012362\|Ga0137361_10594982	All Organisms → cellular organisms → Bacteria → Acidobacteria	1014	Open in IMG/M
3300012925\|Ga0137419_10593199	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300012929\|Ga0137404_11495928	Not Available	625	Open in IMG/M
3300014154\|Ga0134075_10375099	Not Available	626	Open in IMG/M
3300015078\|Ga0167660_1012494	Not Available	933	Open in IMG/M
3300015264\|Ga0137403_10017092	All Organisms → cellular organisms → Bacteria	7834	Open in IMG/M
3300015264\|Ga0137403_10164818	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2172	Open in IMG/M
3300015373\|Ga0132257_100630815	All Organisms → cellular organisms → Bacteria → Acidobacteria	1327	Open in IMG/M
3300016270\|Ga0182036_10315261	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300016270\|Ga0182036_11289733	Not Available	609	Open in IMG/M
3300016357\|Ga0182032_10831612	Not Available	782	Open in IMG/M
3300016445\|Ga0182038_10362360	Not Available	1204	Open in IMG/M
3300016445\|Ga0182038_10828343	Not Available	812	Open in IMG/M
3300017822\|Ga0187802_10246299	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300017934\|Ga0187803_10190919	Not Available	807	Open in IMG/M
3300017942\|Ga0187808_10035592	All Organisms → cellular organisms → Bacteria	2071	Open in IMG/M
3300017946\|Ga0187879_10780544	Not Available	533	Open in IMG/M
3300017955\|Ga0187817_10097522	All Organisms → cellular organisms → Bacteria → Acidobacteria	1848	Open in IMG/M
3300017955\|Ga0187817_11103912	Not Available	509	Open in IMG/M
3300017970\|Ga0187783_10451886	Not Available	932	Open in IMG/M
3300017998\|Ga0187870_1138328	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300018012\|Ga0187810_10037565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1796	Open in IMG/M
3300018012\|Ga0187810_10260892	Not Available	712	Open in IMG/M
3300018037\|Ga0187883_10190340	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300018090\|Ga0187770_10336237	Not Available	1179	Open in IMG/M
3300018431\|Ga0066655_11343020	Not Available	515	Open in IMG/M
3300018468\|Ga0066662_11083219	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300020581\|Ga0210399_11079407	Not Available	643	Open in IMG/M
3300021178\|Ga0210408_10291663	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300021180\|Ga0210396_10574900	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300021420\|Ga0210394_10211903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1691	Open in IMG/M
3300021474\|Ga0210390_11164756	Not Available	624	Open in IMG/M
3300021479\|Ga0210410_10004086	All Organisms → cellular organisms → Bacteria	12832	Open in IMG/M
3300021479\|Ga0210410_10010052	All Organisms → cellular organisms → Bacteria	8166	Open in IMG/M
3300022507\|Ga0222729_1058315	Not Available	548	Open in IMG/M
3300024323\|Ga0247666_1022645	All Organisms → cellular organisms → Bacteria → Acidobacteria	1339	Open in IMG/M
3300024330\|Ga0137417_1175998	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300025494\|Ga0207928_1104193	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300026490\|Ga0257153_1111676	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300026528\|Ga0209378_1165558	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M
3300026529\|Ga0209806_1306320	Not Available	533	Open in IMG/M
3300026557\|Ga0179587_11152211	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300026959\|Ga0207852_1002787	All Organisms → cellular organisms → Bacteria	2080	Open in IMG/M
3300027042\|Ga0207766_1023025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_2_68_5	702	Open in IMG/M
3300027567\|Ga0209115_1160082	Not Available	502	Open in IMG/M
3300027604\|Ga0208324_1169189	Not Available	589	Open in IMG/M
3300027703\|Ga0207862_1128018	All Organisms → cellular organisms → Bacteria → Acidobacteria	762	Open in IMG/M
3300027727\|Ga0209328_10174148	Not Available	652	Open in IMG/M
3300027737\|Ga0209038_10242541	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300027795\|Ga0209139_10089650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300027846\|Ga0209180_10101493	All Organisms → cellular organisms → Bacteria → Proteobacteria	1640	Open in IMG/M
3300027853\|Ga0209274_10621225	Not Available	559	Open in IMG/M
3300027867\|Ga0209167_10432817	Not Available	718	Open in IMG/M
3300027874\|Ga0209465_10289587	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300027874\|Ga0209465_10497414	Not Available	609	Open in IMG/M
3300027908\|Ga0209006_11308723	Not Available	560	Open in IMG/M
3300028776\|Ga0302303_10189580	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300028871\|Ga0302230_10437753	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300028906\|Ga0308309_10608992	All Organisms → cellular organisms → Bacteria → Acidobacteria	948	Open in IMG/M
3300028906\|Ga0308309_11904655	Not Available	501	Open in IMG/M
3300029636\|Ga0222749_10466095	Not Available	679	Open in IMG/M
3300030677\|Ga0302317_10415098	Not Available	592	Open in IMG/M
3300030737\|Ga0302310_10368296	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300031231\|Ga0170824_119986383	Not Available	843	Open in IMG/M
3300031234\|Ga0302325_12936387	Not Available	554	Open in IMG/M
3300031446\|Ga0170820_14811026	Not Available	526	Open in IMG/M
3300031668\|Ga0318542_10465229	Not Available	656	Open in IMG/M
3300031708\|Ga0310686_109203899	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300031720\|Ga0307469_11425346	Not Available	661	Open in IMG/M
3300031720\|Ga0307469_12166540	Not Available	541	Open in IMG/M
3300031763\|Ga0318537_10373310	Not Available	526	Open in IMG/M
3300031764\|Ga0318535_10021481	All Organisms → cellular organisms → Bacteria	2491	Open in IMG/M
3300031770\|Ga0318521_10697416	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300031771\|Ga0318546_10661623	Not Available	735	Open in IMG/M
3300031890\|Ga0306925_10754270	All Organisms → cellular organisms → Bacteria → Acidobacteria	1014	Open in IMG/M
3300031890\|Ga0306925_11398758	Not Available	690	Open in IMG/M
3300031910\|Ga0306923_10753605	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300031946\|Ga0310910_10657232	All Organisms → cellular organisms → Bacteria → Acidobacteria	830	Open in IMG/M
3300031946\|Ga0310910_10944086	Not Available	675	Open in IMG/M
3300031962\|Ga0307479_10173410	All Organisms → cellular organisms → Bacteria	2120	Open in IMG/M
3300032051\|Ga0318532_10181221	Not Available	748	Open in IMG/M
3300032063\|Ga0318504_10108313	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300032076\|Ga0306924_10894190	Not Available	983	Open in IMG/M
3300032091\|Ga0318577_10344128	Not Available	713	Open in IMG/M
3300032180\|Ga0307471_103303561	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300032205\|Ga0307472_100926981	Not Available	809	Open in IMG/M
3300032261\|Ga0306920_102603518	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300032783\|Ga0335079_10006671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	13206	Open in IMG/M
3300032954\|Ga0335083_10261609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Desulfuromonadaceae → Desulfuromonas → Desulfuromonas soudanensis	1541	Open in IMG/M
3300033290\|Ga0318519_10867943	Not Available	557	Open in IMG/M
3300033805\|Ga0314864_0053843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.41%
Host-Associated	Host-Associated	1.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.92%
Aquatic	Environmental → Aquatic	13.49%
Plants	Host-Associated → Plants	1.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.95%
Freshwater	Environmental → Aquatic → Freshwater	11.11%
Peat	Environmental → Terrestrial → Peat	3.97%
Sediment	Environmental → Aquatic → Sediment	2.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.49%
Loam	Environmental → Terrestrial → Soil → Loam	11.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.56%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.46%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.38%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.38%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.38%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.59%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.79%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001172	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300003372	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015078	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11a, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024323	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027042	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 68 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12681J13546_10081062	3300001172	Forest Soil	MKTWQKVSIGVGAVVVLGSIAWYSVYQANKGVVQVQTGK
JGI12053J15887_101887961	3300001661	Forest Soil	MKTWHKVTIGIGGAIVLGGIVLFGINQANKGVVTVQTA
JGI26336J50218_10095181	3300003372	Bog Forest Soil	MKTWKKVLIAVVAVLVLVGIVTFSVNQANKGVVTVQTAKVAAQETLVSQVT
Ga0062384_1011481101	3300004082	Bog Forest Soil	VKGNRMKTWKKVLIALAVVVVGGVIVMVSINQANKGVVTVQTVK
Ga0070706_1014488272	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVAKQ
Ga0070730_107144291	3300005537	Surface Soil	MKTWKKVVIGVVVAGVLIGIVLFSVHQANKGVVTVQ
Ga0066661_108585141	3300005554	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVGKQDTL
Ga0066693_104182611	3300005566	Soil	MKTWQKVAIGAAVVAVGAGIVLYSVNQANKGVTTVQTAKVA
Ga0075023_1001326352	3300006041	Watersheds	MKVWKKLAIGVGVVVVAGGIVLYSVKQANKDVVTVQSGKVSLEPLVTI
Ga0075028_1007080971	3300006050	Watersheds	MKAWKKLAIGVGVVVVAGGIVLYSVKQANKDVVTVQSAKVGLEPLVTIVTSSG
Ga0070716_1016720992	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKMWQKVAIGATVVVVGAGIVLYSVNQANKGVVTVQTARVAK
Ga0075014_1007534752	3300006174	Watersheds	MKTWQKVGLGLGVAALLGGVVWFSINQANKGVVVVQTAKVAK
Ga0075436_1007509041	3300006914	Populus Rhizosphere	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVAKQDTL
Ga0066710_1030561211	3300009012	Grasslands Soil	MKMWHKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAQ
Ga0099830_113396532	3300009088	Vadose Zone Soil	MKTWQKVAIGVGAAVGLGGIVLFSVNQANKGVVTV
Ga0099828_100366601	3300009089	Vadose Zone Soil	MKMWQKVAIGATVVVVGAGIVLYSVNQANKGVVTVQTARVAKQDTLL
Ga0066709_1019050061	3300009137	Grasslands Soil	MKMWHKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVAKQDTLVS
Ga0105855_11644152	3300009649	Permafrost Soil	MKTWQKVTIGVGGVVVLGGIVLFSINQANKGVTTVQTA
Ga0105856_13544991	3300009662	Permafrost Soil	MKTWQKVGIGVGTVAVLGGIVLFSVNQANKGVVTVQ
Ga0126370_117742181	3300010358	Tropical Forest Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKV
Ga0126376_120849631	3300010359	Tropical Forest Soil	MKMWQKVTIGAAVVVVGAGIVLYSVNQANKGLTTVQTAKV
Ga0126372_106678361	3300010360	Tropical Forest Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVAKQDSLVSLVTA
Ga0126372_109141951	3300010360	Tropical Forest Soil	MKMWQKVAIGAAVVVVGAGIVIYSVNQANKGVTTVQTAKV
Ga0126372_122963221	3300010360	Tropical Forest Soil	MKTWQKVGSGFAAAAVVGGIVWFSVNQANKGVVTVQTAKV
Ga0126378_107273771	3300010361	Tropical Forest Soil	MKTWHKVTIGAGVVLVLGGIVLFSVNQANKGVVAVQTAKVT
Ga0126379_108423232	3300010366	Tropical Forest Soil	MKTWQKIGIGVGAAALLGAVVWFSINQANKGIVTVQTAKV
Ga0126381_1012454433	3300010376	Tropical Forest Soil	MKRWPKAAIAIGGAATLGGVVWFSVYQANKGLVTVQTAKVAKMETLVSQVT
Ga0126381_1013682533	3300010376	Tropical Forest Soil	MKRWQKAAIAIGGAATLGGVVWFSVYQANKGLVTVQTAKVAKMETLVSQVT
Ga0126381_1049606011	3300010376	Tropical Forest Soil	MKTWQKVAVGVAVAVVGAGIVLYSVNQANKGVTTVQTAKVAKQDTLVSLVTA
Ga0126383_117151042	3300010398	Tropical Forest Soil	MKTWQKVGSGLAAAAVVGGIVWFSVNQANKGVVTVQT
Ga0137392_102608832	3300011269	Vadose Zone Soil	MKTWQKVGIGLGGVAVLGGIVWFSINQANKGVVTVQTAK
Ga0137392_112530491	3300011269	Vadose Zone Soil	MKMWQKVAIGATVVVVGAGIVLYSVNQANKGVVTVQTARVAKQDTLISL
Ga0137391_109419511	3300011270	Vadose Zone Soil	MKTWQKVGIGVGAVVLLGGVMLFSVNQANKGVVTVQTAK
Ga0137399_102906792	3300012203	Vadose Zone Soil	MRTWHKVTIGAGGSALLGGIVWFTVHQANKGVVTVQ
Ga0137362_109232671	3300012205	Vadose Zone Soil	MKTWHKVAIGAGAVVVLGGIVLFSVNQAHKGVVTV
Ga0137361_105949821	3300012362	Vadose Zone Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVITVQTAKVAKQD
Ga0137419_105931992	3300012925	Vadose Zone Soil	MKTWQKVGIGLGGVAVLGGIVWFSINQANKGVVTV
Ga0137404_114959281	3300012929	Vadose Zone Soil	MKTWQKVCIGGGVAVAIAGIVGYSITAANKGVVTVQTAK
Ga0134075_103750991	3300014154	Grasslands Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVGKQDTLVSLVT
Ga0167660_10124943	3300015078	Glacier Forefield Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVA
Ga0137403_100170925	3300015264	Vadose Zone Soil	MKTWQKVCIGGGVAVAIAGIVGYSITAANKGVVTVQTAKVAKQDTLVSIVT
Ga0137403_101648182	3300015264	Vadose Zone Soil	MKTWQKVCIGGGVAVVILGIVGYSITAANKGVVTVQTAKVAKQDTLVSIVT
Ga0132257_1006308151	3300015373	Arabidopsis Rhizosphere	MKMWHKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVVKQDT
Ga0182036_103152613	3300016270	Soil	MKTWHKVAIGLGGAAVLGGIIWFSINQANKGVVTVQTA
Ga0182036_112897332	3300016270	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVSQATKGVTTVQTAKVAKQD
Ga0182032_108316121	3300016357	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVSQATKGVTTVQTAKVAKQDTLVSLV
Ga0182038_103623602	3300016445	Soil	MKTWHKVGIGLGGALVLGGIVIFSINQANKGVVTV
Ga0182038_108283432	3300016445	Soil	MKMWQKVAIGAAVVVVGTGIILYSINQANKGVITVQTAKVAKQDSLISLVTA
Ga0187802_102462991	3300017822	Freshwater Sediment	MKTWHKIAIGLGGAVLVGGIVWFSINQANKGVVTV
Ga0187803_101909191	3300017934	Freshwater Sediment	MKVWKKVAIGVGVVLAGGGIVAYSVNQANKDVVTVQTAKVGHEHL
Ga0187808_100355921	3300017942	Freshwater Sediment	MAMKTWHKVAIGAGAVAVLGGIVLFSVNQASKGVV
Ga0187879_107805441	3300017946	Peatland	MKPWKRIAIGVAAVVVLGAITWVSVYQANKGVMTVQTGFAKRED
Ga0187817_100975222	3300017955	Freshwater Sediment	MKTWHKILIAVGGTALVGGIVWFSINQANKGVVTVQTAKVV
Ga0187817_111039121	3300017955	Freshwater Sediment	MVERNSMKTWQKVGIGVGAAVVLGGIVWFSINQANK
Ga0187783_104518862	3300017970	Tropical Peatland	MKVWQKVGIGVGVAVILVGIVWFSVNQANKGVVTVQTA
Ga0187870_11383283	3300017998	Peatland	MKTWHKVGIGLAGAAVLGGIVWFSINQANKGVVTV
Ga0187810_100375651	3300018012	Freshwater Sediment	MKTWHKVTIGVGGAALLGGIVWFGVNQARKGVVTVQTAKVAT
Ga0187810_102608921	3300018012	Freshwater Sediment	MKTWQKVAIGLGGAALVGGIVWVSINQANKGVVTVQTAK
Ga0187883_101903401	3300018037	Peatland	MKTWQKVGIGVGAAIALGLIVWFSINQANKGVVTVQTSKVAK
Ga0187770_103362372	3300018090	Tropical Peatland	MKTWQKVGIGAGVVAVLGGLVLFSVYQVNKGVETVQSGQ
Ga0066655_113430201	3300018431	Grasslands Soil	MKMWHKRAIGAGGVVVAGGIVLFSVKQANKGVVTVQA
Ga0066662_110832191	3300018468	Grasslands Soil	MKTWHKVLIGAGALVVLGGIVLFSVNQANKGVVTV
Ga0210399_110794072	3300020581	Soil	MKTWQKIGIGVAGVLALGGIVWYSVNQANKGVVTVQ
Ga0210408_102916631	3300021178	Soil	MKTWQKVGIGVGAVAVLGGIVLFSVNQANKGVVTV
Ga0210396_105749001	3300021180	Soil	MKTWQKVGIGLGGVAVLGGIVWFSINQANKGVVTVQT
Ga0210394_102119032	3300021420	Soil	MKTWQKAGIVVAGVLCLGGIVWYSVNQASKGVVTV
Ga0210390_111647561	3300021474	Soil	MKTWQKVGIGVGAVVVLGAIVGISVNQANKGVVTVQ
Ga0210410_1000408611	3300021479	Soil	MKTWQKVGTGLGGVVVLGGIVLFSINQANKGVVTVQTA
Ga0210410_100100521	3300021479	Soil	MKTWQKVGMGLGGVAVLGGIVWFSINQANKGVVTVQTAK
Ga0222729_10583152	3300022507	Soil	MKTWHKVAIGVGAVVVLGGIVLFSVNEANKGVETVQTAKVATQD
Ga0247666_10226452	3300024323	Soil	MKMWHKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVAKQ
Ga0137417_11759981	3300024330	Vadose Zone Soil	MKTWHKVAIGAGAVVVLGGIVLFSVNQANKGVVTTVQTAK
Ga0207928_11041931	3300025494	Arctic Peat Soil	MKTWQKVTIGVGGVVVLGGIVLFSINQANKGVTTVQTAKVASQDALISQVTASGE
Ga0257153_11116761	3300026490	Soil	MKMWQKVATGATVVVVGTGIVLYSVNQANKGVITVQTAKVAKQDSLVSLVTASGEIKPTT
Ga0209378_11655582	3300026528	Soil	MKTWQKVCIGGGVAVAIAGIVGYSITAANKGVVTVQTAKVAKQD
Ga0209806_13063201	3300026529	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVG
Ga0179587_111522111	3300026557	Vadose Zone Soil	MKTWQKVGIAVAVVVVGAGIVLYSVNQANKGVITVQTAKVGKQDRLVSLVTASGEIKPTT
Ga0207852_10027871	3300026959	Tropical Forest Soil	MKTWQKVGIGLAAAAVVGGIVWFSVNQANKGVVTV
Ga0207766_10230252	3300027042	Tropical Forest Soil	MKTWQKVGIGLAAAAVVGGIVWFSVNQANKGVVTVQ
Ga0209115_11600821	3300027567	Forest Soil	MKTWQKVLIAVAVVAVLGGIVWYSVYQNNKGVVTVQTGH
Ga0208324_11691891	3300027604	Peatlands Soil	MKAWKKVTIGVGVVIVAGGIVLYSVKQANKDVVTVQSAK
Ga0207862_11280182	3300027703	Tropical Forest Soil	MKTWQKVLIGVGGAAILAGVVVVSINQANKGVITV
Ga0209328_101741481	3300027727	Forest Soil	MKTWKKVVIGLVILAALGGIVMYSVNLANKDVVTVQTAKV
Ga0209038_102425411	3300027737	Bog Forest Soil	MKTWQKVAIGVVAVVAIIGIVWFSVNLANKGVVTVQT
Ga0209139_100896501	3300027795	Bog Forest Soil	MKTWKKAVIGVVVAGVLIGIVVFSVNQANKGVVTVQ
Ga0209180_101014931	3300027846	Vadose Zone Soil	MKTWQKVAIGVGAAVGLGGIVLFSVNQANKGVITVQTAKVTPQETLVSQVTASG
Ga0209274_106212251	3300027853	Soil	MKTWKKVVIGLVVAGALIGIVVFSVNQANKGVVTVQTAKVVTSDDLVSL
Ga0209167_104328173	3300027867	Surface Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQTAKVAKQDSLVSL
Ga0209465_102895872	3300027874	Tropical Forest Soil	MKTWHKVAIGAGVVVVLGGIVLFSVNQANKGVVTV
Ga0209465_104974141	3300027874	Tropical Forest Soil	MKMWQKVAIGAAVVVVGAGIVMYSVTQANKGVTTVQTAKVAKQDTL
Ga0209006_113087231	3300027908	Forest Soil	MKTWQKVGIGVGAVVILGSISWYSIYQSNKGVVTVQSG
Ga0302303_101895801	3300028776	Palsa	MKTWQKVAIGLGAVVVLGGIVLFSINQANKDVMTVQTAKVSPQPSLVSQ
Ga0302230_104377531	3300028871	Palsa	MKTWQKVAIGLGAVVVLGGIVLFSINQANKDVMTVQTAK
Ga0308309_106089921	3300028906	Soil	MKTWKKVVIGLVAAGVLIGIVVFSVNQANKGVVTVQT
Ga0308309_119046551	3300028906	Soil	MKTWKKAVMGLVVAGVLIGIVVFSVNQANKGVVTVQ
Ga0222749_104660951	3300029636	Soil	MKTWKKVTIGLVVVAALGTIVWISVNAANKGVVTV
Ga0302317_104150981	3300030677	Palsa	MKTWQKVSIGVGAAVVLCSIAWYSVYQANKGVVQV
Ga0302310_103682961	3300030737	Palsa	MKTWQKVAIGLGAVVVLGGIVLFSINQANKDVMTVQTAKVSPQPSLVSQVTASG
Ga0170824_1199863832	3300031231	Forest Soil	MKTWQKVGIGLCGAAALGGLVWFSINKANQGVVTVQTAKVAK
Ga0302325_129363871	3300031234	Palsa	MKTWQKVSIGVGAVVVLGSIAWFSIYQANKGVVQVQT
Ga0170820_148110261	3300031446	Forest Soil	MKMWQKVAIGVAVVAVGAGIVLYSVNQANKGVTTVQTAKV
Ga0318542_104652291	3300031668	Soil	MKMWQKVAIGAAAVVVGAGIVLYSINQANKGVTTVQTAKVA
Ga0310686_1092038991	3300031708	Soil	MKTWQKVGIGAGVVLVLGGMAWFSAYQVNKGVVAVQ
Ga0307469_114253461	3300031720	Hardwood Forest Soil	MKMWQKVAIGAAVVVVGAGIVIYSVNQANKGVTTVQTAKVAKQDTL
Ga0307469_121665401	3300031720	Hardwood Forest Soil	MKMWQKVAIGAAVVVVGAGIVLYSVNQANKGVTTVQ
Ga0318537_103733102	3300031763	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVSQATKGVTTVQTAKVAKQDTLIS
Ga0318535_100214813	3300031764	Soil	MKTWQKVGSGLAAAAVVGGIVWFSVNQANKGVVTVQTAKVA
Ga0318521_106974163	3300031770	Soil	MKTWHKVTIGAGVLVVLGGIVLFSVNQANKGVVAVQTAK
Ga0318546_106616232	3300031771	Soil	MKMWQKVAIGAAVAVVGAGIVLYSVNQASKGVTTV
Ga0306925_107542702	3300031890	Soil	MKTWHKVGMGLGVAAVLGGVVLYSINQANKGVVTVQTAK
Ga0306925_113987581	3300031890	Soil	MKMWQKVGSGLAAAAVVGGIVWFSVNQAHKGVVTVQTAKVAKQDS
Ga0306923_107536052	3300031910	Soil	MKMWQKVGSGLAAAAVVGGIVWFSVNQAHKGVVTVQTAKVAKQDSLISLVT
Ga0310910_106572322	3300031946	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVSQATKGVTTVQTAKVAKQDTLVSLVT
Ga0310910_109440861	3300031946	Soil	MKTWHKVLIGIGAAAVVSGVVWYSINQANKGVVTVQTAKV
Ga0307479_101734101	3300031962	Hardwood Forest Soil	MKTWQKVLIGGAVVVVIGGVVMYSINAANKGVVTVQTAK
Ga0318532_101812211	3300032051	Soil	MKMWQKVAIGAAVVVVGAGIVLYSVSQATKGVTTVQ
Ga0318504_101083132	3300032063	Soil	MKMWQKVAIGAAVVVVAAGIVLYSVNQANKGVTTVQTAKVAKQDTLVS
Ga0306924_108941901	3300032076	Soil	MKMWQKVAIGAAVVVVGTGIILYSINQANKGVITVQTAKVAKQDSLI
Ga0318577_103441281	3300032091	Soil	MKTWQKVGSGLAAAAVVGGIVWFSVNQANKGVVTV
Ga0307471_1033035611	3300032180	Hardwood Forest Soil	MKTWQKVGIGVGGAVVLGGIVLFSVNQANKGVVTV
Ga0307472_1009269811	3300032205	Hardwood Forest Soil	MKTWQKVGIGVSAVVVLGGIVGYSVNKANKGVVTVQTAKVAPAETL
Ga0306920_1026035181	3300032261	Soil	MKTWHKVTIGAGVLVVLGGIVLFSVNQANKGVVAV
Ga0335079_100066711	3300032783	Soil	MKVWKKVTIGVGVVVLGGGIVLYSVNQANKDVVTVQTAKVGREH
Ga0335083_102616092	3300032954	Soil	MKTWQKVGIGIGVAALLAGLVVFSITQANKGVVTVQTAKVAKMDTLISQ
Ga0318519_108679431	3300033290	Soil	MKTWQKVGIGLAAAAVVGGIVWFSVNQANKGVVTVQTAKVA
Ga0314864_0053843_810_920	3300033805	Peatland	MKTWQKVAIGLGGAAAIAIIAGISINQANKGVVTVQT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F067024

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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