Metagenome / Metatranscriptome Family F066947

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066947
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	40 residues
Representative Sequence	GSNRTPLLADHMAVNIAPGDIDQLAATLQHKVSRGKMYLT
Number of Associated Samples	115
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	77.78 %
% of genes from short scaffolds (< 2000 bps)	69.05 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.222 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.524 % of family members)
Environment Ontology (ENVO)	Unclassified (26.190 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.762 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.53% β-sheet: 0.00% Coil/Unstructured: 76.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF08811	DUF1800	56.35
PF13188	PAS_8	3.17
PF10067	DUF2306	2.38
PF01609	DDE_Tnp_1	1.59
PF00355	Rieske	1.59
PF01058	Oxidored_q6	1.59
PF07394	DUF1501	1.59
PF13185	GAF_2	0.79
PF13231	PMT_2	0.79
PF05973	Gp49	0.79
PF12697	Abhydrolase_6	0.79
PF08241	Methyltransf_11	0.79
PF07843	DUF1634	0.79
PF00144	Beta-lactamase	0.79
PF13517	FG-GAP_3	0.79
PF12146	Hydrolase_4	0.79
PF08327	AHSA1	0.79
PF14060	DUF4252	0.79
PF03551	PadR	0.79
PF13426	PAS_9	0.79
PF00023	Ank	0.79
PF00873	ACR_tran	0.79
PF04307	YdjM	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	56.35
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.59
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.59
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.59
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.59
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.59
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.59
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	1.59
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	1.59
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	1.59
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	1.59
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.79
COG1988	Membrane-bound metal-dependent hydrolase YbcI, DUF457 family	General function prediction only [R]	0.79
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.79
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.79
COG4272	Uncharacterized membrane protein	Function unknown [S]	0.79
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.79
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.79
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.79
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.22 %
Unclassified	root	N/A	27.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.22 %
Unclassified	root	N/A	27.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.22 %
Unclassified	root	N/A	27.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.46 %
Unclassified	root	N/A	27.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	52.38 %
Unclassified	root	N/A	27.78 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.73 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.38 %
Unclassified	root	N/A	27.78 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.94 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.79 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.38 %
Unclassified	root	N/A	27.78 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.94 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.38 %
Unclassified	root	N/A	27.78 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.38 %
Unclassified	root	N/A	27.78 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.38 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.79 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101213257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300000955\|JGI1027J12803_107096428	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300001356\|JGI12269J14319_10243243	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300001593\|JGI12635J15846_10672792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	598	Open in IMG/M
3300002245\|JGIcombinedJ26739_100236588	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1716	Open in IMG/M
3300002245\|JGIcombinedJ26739_101090807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300002245\|JGIcombinedJ26739_101527965	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300005541\|Ga0070733_10187077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1352	Open in IMG/M
3300005541\|Ga0070733_10375616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300005542\|Ga0070732_11028180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300005557\|Ga0066704_10833289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300005602\|Ga0070762_10030128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2895	Open in IMG/M
3300005602\|Ga0070762_10050384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2292	Open in IMG/M
3300005610\|Ga0070763_10024804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2689	Open in IMG/M
3300006052\|Ga0075029_100291466	Not Available	1040	Open in IMG/M
3300006162\|Ga0075030_100418868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1067	Open in IMG/M
3300006176\|Ga0070765_100616165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300006893\|Ga0073928_10025039	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5946	Open in IMG/M
3300006893\|Ga0073928_10279284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1264	Open in IMG/M
3300009090\|Ga0099827_11118480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300009522\|Ga0116218_1146366	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300009523\|Ga0116221_1425024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300009616\|Ga0116111_1090815	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300009623\|Ga0116133_1181974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300009624\|Ga0116105_1009814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1947	Open in IMG/M
3300009628\|Ga0116125_1109466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300009646\|Ga0116132_1269599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300009665\|Ga0116135_1058400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1350	Open in IMG/M
3300009700\|Ga0116217_10011660	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7236	Open in IMG/M
3300009700\|Ga0116217_10673462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300010048\|Ga0126373_12528715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300010048\|Ga0126373_13054009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300010343\|Ga0074044_10938455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300010376\|Ga0126381_101385417	Not Available	1016	Open in IMG/M
3300011269\|Ga0137392_10659674	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300012189\|Ga0137388_11689924	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300012199\|Ga0137383_10992457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300012208\|Ga0137376_10491007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1065	Open in IMG/M
3300012354\|Ga0137366_11212538	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300013307\|Ga0157372_10433711	All Organisms → cellular organisms → Bacteria → Acidobacteria	1532	Open in IMG/M
3300014165\|Ga0181523_10169927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1274	Open in IMG/M
3300014200\|Ga0181526_10267431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1090	Open in IMG/M
3300014657\|Ga0181522_10253012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1041	Open in IMG/M
3300014658\|Ga0181519_10880278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300016404\|Ga0182037_12055091	Not Available	513	Open in IMG/M
3300017934\|Ga0187803_10015754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3015	Open in IMG/M
3300017935\|Ga0187848_10206253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300017936\|Ga0187821_10466013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300017941\|Ga0187850_10181128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	973	Open in IMG/M
3300017959\|Ga0187779_10490044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300017961\|Ga0187778_10570686	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300017970\|Ga0187783_10238533	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1331	Open in IMG/M
3300017974\|Ga0187777_11165148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300017975\|Ga0187782_10668856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300017975\|Ga0187782_11645529	Not Available	507	Open in IMG/M
3300018018\|Ga0187886_1351442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300018085\|Ga0187772_10067743	All Organisms → cellular organisms → Bacteria → Acidobacteria	2235	Open in IMG/M
3300020579\|Ga0210407_10455195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300020579\|Ga0210407_10898637	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300020580\|Ga0210403_10873153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	711	Open in IMG/M
3300020583\|Ga0210401_10127439	Not Available	2387	Open in IMG/M
3300021181\|Ga0210388_10901731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300021404\|Ga0210389_10258646	Not Available	1362	Open in IMG/M
3300021432\|Ga0210384_10834491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300021477\|Ga0210398_10543833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	945	Open in IMG/M
3300021479\|Ga0210410_10146300	All Organisms → cellular organisms → Bacteria → Acidobacteria	2105	Open in IMG/M
3300022722\|Ga0242657_1237388	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300022732\|Ga0224569_108475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300025414\|Ga0208935_1055490	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300025434\|Ga0208690_1059241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300025939\|Ga0207665_11471011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	542	Open in IMG/M
3300025949\|Ga0207667_11423492	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	666	Open in IMG/M
3300026355\|Ga0257149_1026320	Not Available	808	Open in IMG/M
3300026508\|Ga0257161_1136426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300027516\|Ga0207761_1108912	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300027568\|Ga0208042_1050810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1060	Open in IMG/M
3300027867\|Ga0209167_10164685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1169	Open in IMG/M
3300027879\|Ga0209169_10055127	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	2065	Open in IMG/M
3300027889\|Ga0209380_10485662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300027905\|Ga0209415_11098579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300027911\|Ga0209698_10317850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
3300028020\|Ga0265351_1016315	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300028036\|Ga0265355_1021613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300028566\|Ga0302147_10326509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300028773\|Ga0302234_10454433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300030646\|Ga0302316_10408738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300030760\|Ga0265762_1003823	Not Available	2695	Open in IMG/M
3300031028\|Ga0302180_10370030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	723	Open in IMG/M
3300031234\|Ga0302325_10841068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1286	Open in IMG/M
3300031525\|Ga0302326_10539528	Not Available	1754	Open in IMG/M
3300031708\|Ga0310686_102813332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300031962\|Ga0307479_10058849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3702	Open in IMG/M
3300031962\|Ga0307479_10855878	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300031996\|Ga0308176_11189552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300032180\|Ga0307471_101069460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	973	Open in IMG/M
3300032205\|Ga0307472_100312234	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300032783\|Ga0335079_10002152	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22751	Open in IMG/M
3300032892\|Ga0335081_11753013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300032898\|Ga0335072_11360682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300032955\|Ga0335076_11432800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.44%
Host-Associated	Host-Associated	5.56%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.02%
Aquatic	Environmental → Aquatic	21.43%
Plants	Host-Associated → Plants	5.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.46%
Freshwater	Environmental → Aquatic → Freshwater	17.46%
Peat	Environmental → Terrestrial → Peat	5.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.17%
Sediment	Environmental → Aquatic → Sediment	2.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.38%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	17.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.52%
Loam	Environmental → Terrestrial → Soil → Loam	9.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.38%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.38%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.40%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.14%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.38%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.59%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.14%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.35%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.97%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.38%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.59%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300023019	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028020	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE4	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028566	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_2	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1012132571	3300000364	Soil	RMPMLEGMSVNIAATDIDQLAATLQYKVTRGKIISI*
JGI1027J12803_1070964281	3300000955	Soil	VGSSRVPLLEGSSVNIAATDIDHLAATLQYKISRGRTFST*
JGI12269J14319_102432432	3300001356	Peatlands Soil	SLLADHMPVNIAPGDVDQLAATLQHKVSRGKTYLT*
JGI12635J15846_106727922	3300001593	Forest Soil	LDTISVNIAATDIDHLAATLQHKVSRGKTYLTKEIGS*
JGIcombinedJ26739_1002365882	3300002245	Forest Soil	ADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP*
JGIcombinedJ26739_1010908071	3300002245	Forest Soil	PLLADHMAVNISPGDVDQMAATLQHKASRGRVHLT*
JGIcombinedJ26739_1015279652	3300002245	Forest Soil	HAVGSSRTPLLDTISVNIAATDIDHLAATLQHKVSRGKTYLTKEIGS*
Ga0070733_101870771	3300005541	Surface Soil	DAVGSNRTPLLADHMAVNISPADVDQLAATLQHKVSRGKMYLT*
Ga0070733_103756161	3300005541	Surface Soil	IQVRRDAVGSNRAPLLADRVAVNIAPGDIDHLAATLQHKVSRGKVYVTQS*
Ga0070732_110281801	3300005542	Surface Soil	DAVGSNRVPILETGAVNIAAADIDHLAATLQYKVSRGKAYLT*
Ga0066704_108332891	3300005557	Soil	GSSRSPLLDSMTVNIAAADIDHLAATLQYKVSRGKAYLTP*
Ga0066705_108832892	3300005569	Soil	SNRTPFFDDRSASNISPVDVDHLAASLQHKITHGRLYLT*
Ga0066702_103087891	3300005575	Soil	TRFLEDRMAVNIAAGDIDHLAATLQHKVTHGRLYLT*
Ga0068857_1002433512	3300005577	Corn Rhizosphere	NRTPFLQDRLAVNIAAADIDQLAATLQHKVTHGRLYLT*
Ga0070762_100301281	3300005602	Soil	GSNRAPLLDAMQVNIAAADIDHLAATLQHKVSRGKTYLTKELAP*
Ga0070762_100503842	3300005602	Soil	PLLADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP*
Ga0070763_100248043	3300005610	Soil	PLLADHMAVNIAPGDVDQLAATLQHKVSRGKMYLT*
Ga0075029_1002914662	3300006052	Watersheds	SSRVPLLEGTSVNIAAADIDHLAATLQHKVSRGKIISI*
Ga0075030_1004188681	3300006162	Watersheds	SSRTPLLEGTSVNIAAADIDHLAATLQYKVSRGKVIVI*
Ga0070765_1006161652	3300006176	Soil	GSNRAPLLADHMPVTIAPGDIDQLAATLQHKVSRGKTYLT*
Ga0066658_106140012	3300006794	Soil	VRFFEDRAAVNIAAGDIDQLAATLQHKITHGRLYLT*
Ga0066659_111009153	3300006797	Soil	DAVGSNRVPFLEHMSVNIAPGDIDQLAASLQHKLTNGKLYLT*
Ga0073928_100250397	3300006893	Iron-Sulfur Acid Spring	MTVNIAAADIDHLAATLQHKVSRARVYLTKEIGS*
Ga0073928_102792842	3300006893	Iron-Sulfur Acid Spring	PLLADHMAVNIAPGDVDQLAAALQHKVSRGKVYLT*
Ga0066710_1003054261	3300009012	Grasslands Soil	GSNRVPFLQDRNALNIAPVDIDQLAAGLQHRLSHGRLYLT
Ga0099827_111184801	3300009090	Vadose Zone Soil	VGSNRVPFLEHMSVNIAAGDIDQLAAGLQHKLSHGKMYLT*
Ga0116214_13152952	3300009520	Peatlands Soil	PFLQDRMVGDIAAADIDQLAASLQHKMSHGRLYLT*
Ga0116218_11463661	3300009522	Peatlands Soil	TPLLDPMQVNIAAADIDHLAATLQHKVSRGKVYLTKELGQ*
Ga0116221_14250242	3300009523	Peatlands Soil	AVGSNRTPLLADHMSVNIAPTDVDQLAATLQHKISRGKMYLT*
Ga0116111_10908151	3300009616	Peatland	DTMSVNIAATDIDHLAATLQHKISRGKVYLTKEIGS*
Ga0116133_11819742	3300009623	Peatland	GSSRTPLLADHMPVNIGPSDVDQLAATLQHKVSRGKVYLT*
Ga0116105_10098141	3300009624	Peatland	TPMLHGMSVNIAAADIDQLAATLQHKVSRGKTYLTKELGQ*
Ga0116125_11094661	3300009628	Peatland	VGSSRTPLLDTMSVNIAASDIDHLAATLQHRVSRGKTYLT*
Ga0116132_12695992	3300009646	Peatland	GSNRAPLLDAMQVNIAAADIDHLAATLQHKVSRGKVYLTKELAP*
Ga0116135_10584002	3300009665	Peatland	VRRDAVGSSRAPLLADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP*
Ga0116217_100116601	3300009700	Peatlands Soil	NRTPLLDPMQVNIAASDIDHLAATLQHKVSRGKVYLTKELGQ*
Ga0116217_106734621	3300009700	Peatlands Soil	VGSNRTPLLHGMAVNIAATDIDHLAATLQHKVSREKKYLT*
Ga0126373_125287151	3300010048	Tropical Forest Soil	SRSPLLESMSVNIAAADIDHLAATLQYKVSRGKAYLT*
Ga0126373_130540091	3300010048	Tropical Forest Soil	VVGSSRAPLLDSMSLNIAATDIDHLAATLQHKVSRGKAYST*
Ga0074044_109384552	3300010343	Bog Forest Soil	LLADHMAVNIAPGDVDQLAATLQHKVSRGKMYLT*
Ga0126379_101948571	3300010366	Tropical Forest Soil	SRTPLLERAVDIAPGDIDQLAANLQHKVTHGRLYQT*
Ga0126381_1013854171	3300010376	Tropical Forest Soil	DVVGSSRAPLLDSMSLNIAATDIDHLAATLQYKVSRGKAYST*
Ga0137392_106596742	3300011269	Vadose Zone Soil	GSNRTPLLADHMAVNIAPGDIDQLAATLQHKVSRGKMYLT*
Ga0137388_107824701	3300012189	Vadose Zone Soil	NHVRFFEDRAAVNIAAGDIDHLAATLQHKVTHGRLYLT*
Ga0137388_116899242	3300012189	Vadose Zone Soil	VGSNRTPLLDSAQVNIAAADIDQLAATLQHKVSRGKMYLTKESDQ*
Ga0137383_109924571	3300012199	Vadose Zone Soil	VVGSNRTPLLDTMPVNIAAADIDQLAATLQHKVSRGKLYLTKESGH*
Ga0137376_104910071	3300012208	Vadose Zone Soil	DAIGSNRTPLLADRMTVNIAASDIDHLAATLQHKVSHGKLYLT*
Ga0137366_112125381	3300012354	Vadose Zone Soil	LDSVPVNISASDIDQLAATLQHKVSRGKLYLAKESGH*
Ga0137407_100141857	3300012930	Vadose Zone Soil	VGSNRVRFFEDRMPVNIAAGDIDQLAATLQHKVTHGRLYLT*
Ga0164301_115135561	3300012960	Soil	SVGSNRTPFLQDRLAVNIAAGDIDQLAATLQHKVTHGRLYLT*
Ga0157372_104337114	3300013307	Corn Rhizosphere	SSRSPLLDSMGVNIAAADIDHLAATLQYKVSRGKAYLTP*
Ga0181523_101699271	3300014165	Bog	SSRVPLLAEHMTVNIAPTDVDQLAATLQHKVSNGKMYLT*
Ga0181526_102674312	3300014200	Bog	QVRRDAVGSNRVPLLAEHMPVSIAPGDVDQLAATLQHKVSRGKMYLT*
Ga0181522_102530122	3300014657	Bog	DAVGSNRTPMLDGMQVNIAAADIDHLAATLQHKVSRGKVYLTKEASY*
Ga0181519_108802781	3300014658	Bog	SNRTPLLADHMALNIAPTDVDHLAATLQHKVSRDKVFLT*
Ga0182037_120550911	3300016404	Soil	VPMLEGMPVNIAASDIDQLAATLQYKVSRGRVISV
Ga0187818_101549942	3300017823	Freshwater Sediment	RDTVGSNRTPFLQDRVQANIAAADVDQLAASLQHKITHGRLFLT
Ga0187801_101011672	3300017933	Freshwater Sediment	RARFLEGRMADNIATADIDHLAATLQHKVNRGRLYLT
Ga0187803_100157541	3300017934	Freshwater Sediment	AVGSNRMPLLAGHTSVNIAAGDIDHLAASLQHKTSRGKMYLTSGS
Ga0187848_102062532	3300017935	Peatland	PLLTDHMAVNIAPGDIDQLAATLQHKVSRGKTYLT
Ga0187821_104660131	3300017936	Freshwater Sediment	VGSNRTPFLEPAAVNIAATDIDHLAASLQYKVSRGKTYLTT
Ga0187850_101811281	3300017941	Peatland	VRRDAVGSSRTPLLADHMPVNIGPSDVDQLAATLQHKVSRGKVYLT
Ga0187779_104900441	3300017959	Tropical Peatland	LDGVPVNIAAADIDQLAATLQHKVSRGKTYATSTAASSEQ
Ga0187778_105706862	3300017961	Tropical Peatland	TPLLDGMPVNIAAADIDQLAATLQHKVSHGKAYLT
Ga0187783_102385332	3300017970	Tropical Peatland	SRSPLLESMSVNIAAADIDHLAATLQYKVSRGKAYLT
Ga0187777_111651481	3300017974	Tropical Peatland	NRAPLLTDRISVNIAAGDIDHLAATLQHKVSRGKVYST
Ga0187782_106688562	3300017975	Tropical Peatland	VVGSSRAPLLTDRMSVNIAAGDIDHLAATLQHKVSRGKSYVT
Ga0187782_116455292	3300017975	Tropical Peatland	VVGSSRSQLLDSMAVNIAAADIDHLAATLQYKVSRGKAYLT
Ga0187886_13514422	3300018018	Peatland	RDAVGSNRTPLLADHMSVNISPTDVDHLAATLQHKVSRAKMYLT
Ga0187859_106393202	3300018047	Peatland	VGSNRTPFLQDRMGGDIAAADIDQLAASLQHKMNHGRLYLT
Ga0187772_100677432	3300018085	Tropical Peatland	VRRDVVGSSRAPLLDSTPVNIAAPDIDQLAAALQHKVSRGKSYLTGQS
Ga0066669_115143182	3300018482	Grasslands Soil	VVRNRAPFLAYRMSVNIAPADVDQLAATLQHKITHGRLYLT
Ga0210407_104551952	3300020579	Soil	DAIGSNRTPLLADRMTVNIAASDIDHLAATLQHKVSHGKLYLT
Ga0210407_108986371	3300020579	Soil	PLLADHMAVNIGPGDVDQLAATLQHKVSRGKMYLT
Ga0210403_108731532	3300020580	Soil	SSRTPLLAEHMPVNIAPGDVDQLAATLQHKVSRGKMYLT
Ga0210401_101274392	3300020583	Soil	RAPLLADHMPVTIAPGDIDQLAATLQHKVSRGKTYLT
Ga0210388_109017312	3300021181	Soil	TPLLDSMTVNIAAADIDQLAATLQHKVSRGRMYLTKESGH
Ga0210389_102586462	3300021404	Soil	TPLLADHMAVNISPTDIDQLAATLQHKVSRGKMYLT
Ga0210384_108344911	3300021432	Soil	LLDTMTVNIAAADIDQLAATLQHKVSRGRMYLTKESGH
Ga0210398_105438331	3300021477	Soil	VRRDAVGSSRAPLLADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP
Ga0210410_101463002	3300021479	Soil	GSNRTPLLADRMTVNIAASDIDHLAATLQHKVSHGKLYLT
Ga0126371_129791781	3300021560	Tropical Forest Soil	RDAVGSSRTPLLERAVDIAPGDIDQLAANLQHKVTHGRLYQT
Ga0242657_12373882	3300022722	Soil	SNRVPLLAEHMAVNIAPGDVDQLAATLQHKVSRGKAYLT
Ga0224569_1084751	3300022732	Rhizosphere	RDAVGSSRAPLLADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP
Ga0224560_1102202	3300023019	Soil	TPFLQDRMGGDIAAADIDQLAASLQHKMNHGRLYLT
Ga0208935_10554901	3300025414	Peatland	GMSVNIAAADIDQLAATLQHKVSRGKTYLTKELGQ
Ga0208690_10592412	3300025434	Peatland	TPLVSDHMTVNLGPADVDQLAATLQHKVSRGKMYLT
Ga0207665_114710111	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AVGSSRSPLLDTTPVTIAAADIDHLAATLQHKVSRGKVFLT
Ga0207667_114234923	3300025949	Corn Rhizosphere	SRAPLLESMTVNIAAADIDHLAATLQYKVSRGKVYLTP
Ga0207668_100031241	3300025972	Switchgrass Rhizosphere	PFLQDRLAVNIAAADIDQLAATLQHKVTHGRLYLT
Ga0207674_101308314	3300026116	Corn Rhizosphere	NRTPFLQDRLAVNIAAADIDQLAATLQHKVTHGRLYLT
Ga0257149_10263201	3300026355	Soil	TPLLDTLSVNIAAADIDHLAATLQHKMSRGKTYSTKELSS
Ga0257161_11364261	3300026508	Soil	IGSNRTPLLADRMTVNIAASDIDHLAATLQHKVSHGKLYLT
Ga0207761_11089121	3300027516	Tropical Forest Soil	SSRVPMLEGMPVNIAATDIDQLAATLQYKVSRGRVISI
Ga0208042_10508102	3300027568	Peatlands Soil	DAVGSSRVPLLADHMAVNIAPGDVDQLAATLQHKVSRGKMYLT
Ga0209139_101871252	3300027795	Bog Forest Soil	YAVGSNRTPFLEERMAGNISAPDVDQLASTLQHKTSHGRLFLT
Ga0209773_104966372	3300027829	Bog Forest Soil	PFLQDRMGGDIAAADIDQLAASLQHKMNHGRLYLT
Ga0209517_101675391	3300027854	Peatlands Soil	NRTPFLQDRMGGDIAASDVDQLAAALQHKMSHGRLFLT
Ga0209167_101646852	3300027867	Surface Soil	IQVRRDAVGSNRAPLLADRVAVNIAPGDIDHLAATLQHKVSRGKVYVTQS
Ga0209169_100551272	3300027879	Soil	APLLADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP
Ga0209380_104856621	3300027889	Soil	GSNRAPLLADHMAVNIAPGDVDQLAATLQHKVTRGKMYLT
Ga0209415_110985792	3300027905	Peatlands Soil	GSNRTPLLADHMSVNIAPTDVDQLAATLQHKISRGKMYLT
Ga0209698_103178501	3300027911	Watersheds	TPLLDSMLVNIAAADIDQLAATLQHKVSRGKVYLTKEIGY
Ga0265351_10163151	3300028020	Soil	RREAVGSNRVPLLAEHMAVNIAPGDVDQLAATLQHKVSRGKAYLT
Ga0265355_10216131	3300028036	Rhizosphere	RRDAVGSNRTPLLADHMAVNISPTDVDQLAATLQHKASRGKMYLT
Ga0302147_103265091	3300028566	Bog	RRDAVGSSRMPLLADHMAVNISPADVDQLAATLQHKVTRGKMYLT
Ga0302234_104544331	3300028773	Palsa	NRTPLLADHMAVNIAPGDVDQLAATLQHKVSRGKMYLT
Ga0302316_104087382	3300030646	Palsa	TAVLQGMPVNIAAADIDQLAATLQHKVSRGRAYLTKELGS
Ga0265762_10038232	3300030760	Soil	RAPLLADRVSVNIAPGDIDQLAATLQHKVSRGKVYVSQP
Ga0302180_103700301	3300031028	Palsa	RDAVGSNRAPLLADHMAVNIAPGDVDQLAATLQHKVSRGKNYLT
Ga0302325_108410682	3300031234	Palsa	EAVGSNRVPLLADHMSVNIAPSDVDQLAATLQHKVSRGKTYLT
Ga0302326_105395281	3300031525	Palsa	DAVGSNRAPLLADHMAVNIAPGDVDQLAATLQHKVSRGKNYLT
Ga0310686_1028133321	3300031708	Soil	LLDTMSVNIAAADIDHLAATLQHKVSRGKMYLTKESGQ
Ga0307468_1014059932	3300031740	Hardwood Forest Soil	DSVGSNRSPFLQDRMAVNIAAGDIDQLAATLQHKVTHGRLYLT
Ga0307475_111876431	3300031754	Hardwood Forest Soil	TPFLEGRLAESIAATDIDHLAATLQHKVTHGRLTLV
Ga0307479_100588491	3300031962	Hardwood Forest Soil	SNRTPLLAEHMSVNIAPGDVDQLAATLQHKVSRGKVYLT
Ga0307479_108558781	3300031962	Hardwood Forest Soil	RTPLLDSISVNIAATDIDHLAATLQHKVSRGKTYLTKEIGS
Ga0308176_111895522	3300031996	Soil	RSPLLDSMSVNIAAADIDHLAATLQYKVSRGKAYLTP
Ga0307471_1010694601	3300032180	Hardwood Forest Soil	NRTPLLADRMTVNIAASDIDHLAATLQHKVSHGKLYLT
Ga0307472_1003122341	3300032205	Hardwood Forest Soil	VGSSRVPLLEGALINIAATDIDHLAATLQHKVSRGRTIVI
Ga0335079_1000215225	3300032783	Soil	VPLLENTSVNIAAADIDHLAATLQYKVSRGKAYLT
Ga0335081_117530131	3300032892	Soil	DVVGSSRAPLLDGVPVNIAAADIDQLAATLQHKVSRGKTYAT
Ga0335072_113606822	3300032898	Soil	NRVPLLPERTVNIAASDIDQLAAGLQHKLSRGRAYSAP
Ga0335076_114328001	3300032955	Soil	GSSRVPLLEGSSVNIAAADIDHLAATLQYKVSRAKAYLT
Ga0310810_100200611	3300033412	Soil	TPFLADKHSVNIAPGDIDHLAAALQHKTTNGRRYVT
Ga0326726_100359625	3300033433	Peat Soil	RIPFLEERVALNIAPSDIDQLAATLQHKISHGKQYLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066947

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences