Metagenome Family F066930

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066930
Family Type	Metagenome
Number of Sequences	126
Average Sequence Length	94 residues
Representative Sequence	ATMTTTSRHALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS
Number of Associated Samples	97
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.60 %
% of genes near scaffold ends (potentially truncated)	74.60 %
% of genes from short scaffolds (< 2000 bps)	88.10 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.762 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (27.778 % of family members)
Environment Ontology (ENVO)	Unclassified (36.508 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.81% β-sheet: 5.08% Coil/Unstructured: 66.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF12838	Fer4_7	5.56
PF13763	DUF4167	2.38
PF00037	Fer4	1.59
PF01568	Molydop_binding	1.59
PF02515	CoA_transf_3	1.59
PF13924	Lipocalin_5	0.79
PF12697	Abhydrolase_6	0.79
PF13505	OMP_b-brl	0.79
PF01548	DEDD_Tnp_IS110	0.79
PF02518	HATPase_c	0.79
PF00999	Na_H_Exchanger	0.79
PF13683	rve_3	0.79
PF07702	UTRA	0.79
PF13361	UvrD_C	0.79
PF00563	EAL	0.79
PF13581	HATPase_c_2	0.79
PF04349	MdoG	0.79
PF02586	SRAP	0.79
PF11737	DUF3300	0.79
PF04226	Transgly_assoc	0.79
PF09084	NMT1	0.79
PF02545	Maf	0.79
PF07369	DUF1488	0.79
PF11752	DUF3309	0.79
PF04392	ABC_sub_bind	0.79
PF02627	CMD	0.79
PF00072	Response_reg	0.79
PF03401	TctC	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	1.59
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.79
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.79
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.79
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.79
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.79
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.79
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.79
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.79
COG3131	Periplasmic glucan biosynthesis protein OpgG	Cell wall/membrane/envelope biogenesis [M]	0.79
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.79
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.79
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.79
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.79
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.79
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.79
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.79
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.79
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.79
COG0424	7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.76 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.76 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.76 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.00 %
Unclassified	root	N/A	45.24 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	45.24 %
Unclassified	root	N/A	45.24 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.98 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.38 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.59 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.38 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Filomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium	2.38 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	2.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.79 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.79 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Filomicrobium insigne	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	2.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.79 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.79 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.79 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.24 %
Filomicrobium insigne	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	2.38 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.38 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.59 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.59 %
Novosphingobium sp. PP1Y	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	0.79 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.79 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.79 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	0.79 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.79 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_141019_length_1343_cov_10.679821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1375	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0575143	Not Available	640	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10985773	Not Available	640	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100330784	Not Available	829	Open in IMG/M
3300000787\|JGI11643J11755_11642870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	929	Open in IMG/M
3300000787\|JGI11643J11755_11748660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1152	Open in IMG/M
3300000956\|JGI10216J12902_110679412	All Organisms → cellular organisms → Bacteria → Proteobacteria	1749	Open in IMG/M
3300004114\|Ga0062593_103297929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. PP1Y	518	Open in IMG/M
3300004463\|Ga0063356_103281712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300004479\|Ga0062595_102407989	Not Available	522	Open in IMG/M
3300004480\|Ga0062592_102126912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300005093\|Ga0062594_102037252	Not Available	615	Open in IMG/M
3300005331\|Ga0070670_100619975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	969	Open in IMG/M
3300005337\|Ga0070682_101620853	Not Available	560	Open in IMG/M
3300005347\|Ga0070668_101543834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	607	Open in IMG/M
3300005354\|Ga0070675_101380596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	650	Open in IMG/M
3300005366\|Ga0070659_100430552	Not Available	1117	Open in IMG/M
3300005435\|Ga0070714_101521716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	654	Open in IMG/M
3300005457\|Ga0070662_100713126	Not Available	849	Open in IMG/M
3300005457\|Ga0070662_101661545	Not Available	551	Open in IMG/M
3300005466\|Ga0070685_11428238	Not Available	532	Open in IMG/M
3300005564\|Ga0070664_102320054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	509	Open in IMG/M
3300005617\|Ga0068859_102499545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300005618\|Ga0068864_100880018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300005841\|Ga0068863_101566986	Not Available	668	Open in IMG/M
3300005842\|Ga0068858_100654587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1021	Open in IMG/M
3300005843\|Ga0068860_102623123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300006178\|Ga0075367_10004156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7019	Open in IMG/M
3300006178\|Ga0075367_10209239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1219	Open in IMG/M
3300006844\|Ga0075428_100128631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2755	Open in IMG/M
3300006844\|Ga0075428_100190509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2218	Open in IMG/M
3300006844\|Ga0075428_100226743	Not Available	2017	Open in IMG/M
3300006844\|Ga0075428_101242524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	784	Open in IMG/M
3300006845\|Ga0075421_100068651	All Organisms → cellular organisms → Bacteria	4477	Open in IMG/M
3300006845\|Ga0075421_100529567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1395	Open in IMG/M
3300006845\|Ga0075421_100555343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1356	Open in IMG/M
3300006847\|Ga0075431_100166940	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300006847\|Ga0075431_100281905	Not Available	1682	Open in IMG/M
3300006853\|Ga0075420_100424187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1149	Open in IMG/M
3300006853\|Ga0075420_101485606	Not Available	581	Open in IMG/M
3300006853\|Ga0075420_101730102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300006854\|Ga0075425_100167387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2523	Open in IMG/M
3300006871\|Ga0075434_100691632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1037	Open in IMG/M
3300006880\|Ga0075429_100606954	Not Available	959	Open in IMG/M
3300006880\|Ga0075429_101689152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	550	Open in IMG/M
3300006894\|Ga0079215_10915581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Filomicrobium → Filomicrobium insigne	631	Open in IMG/M
3300006904\|Ga0075424_100128842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2675	Open in IMG/M
3300006904\|Ga0075424_100604713	All Organisms → cellular organisms → Bacteria → Proteobacteria	1171	Open in IMG/M
3300006914\|Ga0075436_100357991	Not Available	1052	Open in IMG/M
3300006954\|Ga0079219_11980391	Not Available	553	Open in IMG/M
3300006969\|Ga0075419_11109745	Not Available	580	Open in IMG/M
3300009094\|Ga0111539_12853910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	559	Open in IMG/M
3300009094\|Ga0111539_13126482	Not Available	534	Open in IMG/M
3300009098\|Ga0105245_11970759	Not Available	637	Open in IMG/M
3300009100\|Ga0075418_10157654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2416	Open in IMG/M
3300009100\|Ga0075418_10230545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1972	Open in IMG/M
3300009100\|Ga0075418_11533134	Not Available	723	Open in IMG/M
3300009100\|Ga0075418_12665069	Not Available	546	Open in IMG/M
3300009101\|Ga0105247_10260286	Not Available	1189	Open in IMG/M
3300009101\|Ga0105247_10781739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300009146\|Ga0105091_10438119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	656	Open in IMG/M
3300009146\|Ga0105091_10664811	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300009147\|Ga0114129_12964316	Not Available	559	Open in IMG/M
3300009156\|Ga0111538_10496999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1546	Open in IMG/M
3300009156\|Ga0111538_11180389	Not Available	967	Open in IMG/M
3300009156\|Ga0111538_13088552	Not Available	581	Open in IMG/M
3300009156\|Ga0111538_13776997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	524	Open in IMG/M
3300009157\|Ga0105092_10866069	Not Available	532	Open in IMG/M
3300009174\|Ga0105241_11481107	Not Available	652	Open in IMG/M
3300009176\|Ga0105242_10472619	Not Available	1186	Open in IMG/M
3300009177\|Ga0105248_11713001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300009545\|Ga0105237_11332029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300010397\|Ga0134124_10343524	Not Available	1404	Open in IMG/M
3300010397\|Ga0134124_10375304	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300010403\|Ga0134123_10404352	Not Available	1253	Open in IMG/M
3300011417\|Ga0137326_1124748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	594	Open in IMG/M
3300011439\|Ga0137432_1231489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300012902\|Ga0157291_10356518	Not Available	527	Open in IMG/M
3300012908\|Ga0157286_10076117	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300012910\|Ga0157308_10287886	Not Available	596	Open in IMG/M
3300012951\|Ga0164300_10684690	Not Available	618	Open in IMG/M
3300012957\|Ga0164303_11452695	Not Available	515	Open in IMG/M
3300012960\|Ga0164301_11457443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300012985\|Ga0164308_12277589	Not Available	504	Open in IMG/M
3300013297\|Ga0157378_10906593	Not Available	912	Open in IMG/M
3300013308\|Ga0157375_10482365	Not Available	1405	Open in IMG/M
3300013308\|Ga0157375_12857899	Not Available	577	Open in IMG/M
3300014325\|Ga0163163_13306609	Not Available	503	Open in IMG/M
3300014326\|Ga0157380_10086259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2579	Open in IMG/M
3300014326\|Ga0157380_13103001	Not Available	530	Open in IMG/M
3300014968\|Ga0157379_10712745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	942	Open in IMG/M
3300015374\|Ga0132255_102407226	Not Available	804	Open in IMG/M
3300017792\|Ga0163161_10137218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1850	Open in IMG/M
3300017965\|Ga0190266_10741852	Not Available	620	Open in IMG/M
3300018422\|Ga0190265_11774878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300018422\|Ga0190265_12504995	Not Available	615	Open in IMG/M
3300018476\|Ga0190274_10540507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1177	Open in IMG/M
3300018476\|Ga0190274_11763128	Not Available	714	Open in IMG/M
3300019377\|Ga0190264_10361479	Not Available	918	Open in IMG/M
3300020581\|Ga0210399_11090098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	639	Open in IMG/M
3300021088\|Ga0210404_10241474	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300021168\|Ga0210406_10237045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1502	Open in IMG/M
3300021178\|Ga0210408_11428652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300021432\|Ga0210384_10385074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1263	Open in IMG/M
3300024288\|Ga0179589_10623509	Not Available	506	Open in IMG/M
3300024347\|Ga0179591_1222245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2230	Open in IMG/M
3300025931\|Ga0207644_11251866	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300025940\|Ga0207691_10633508	Not Available	904	Open in IMG/M
3300026116\|Ga0207674_10958453	Not Available	824	Open in IMG/M
3300026118\|Ga0207675_101940201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300026121\|Ga0207683_11270308	Not Available	682	Open in IMG/M
3300027873\|Ga0209814_10366145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	632	Open in IMG/M
3300027909\|Ga0209382_10013651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9982	Open in IMG/M
3300027909\|Ga0209382_10173795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2483	Open in IMG/M
3300027909\|Ga0209382_10481189	Not Available	1370	Open in IMG/M
3300028380\|Ga0268265_11618857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	653	Open in IMG/M
3300028381\|Ga0268264_10346581	Not Available	1412	Open in IMG/M
3300028592\|Ga0247822_11424107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	584	Open in IMG/M
3300028814\|Ga0307302_10670688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	515	Open in IMG/M
3300028889\|Ga0247827_10734909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	647	Open in IMG/M
3300031716\|Ga0310813_11517509	Not Available	624	Open in IMG/M
3300032000\|Ga0310903_10639783	Not Available	570	Open in IMG/M
3300033550\|Ga0247829_10559140	Not Available	950	Open in IMG/M
3300033551\|Ga0247830_10052352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2686	Open in IMG/M
3300034113\|Ga0364937_151277	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.94%
Environmental	Environmental	42.06%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.94%
Terrestrial	Environmental → Terrestrial	38.10%
Aquatic	Environmental → Aquatic	3.97%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	45.24%
Soil	Environmental → Terrestrial → Soil	37.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.32%
Freshwater	Environmental → Aquatic → Freshwater	2.38%
Roots	Host-Associated → Plants → Roots	2.38%
Sediment	Environmental → Aquatic → Sediment	1.59%
Floodplain	Environmental → Terrestrial → Floodplain	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.14%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.38%
Loam	Environmental → Terrestrial → Soil → Loam	2.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.59%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.59%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.38%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.59%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	27.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.17%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.38%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.38%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.59%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01983250	2140918013	Soil	LILVEHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVSGADPTAPLIVKPVPMHILLTALEELLPSTPRVS
ICChiseqgaiiDRAFT_05751432	3300000033	Soil	GLSGAIMDHALSDGDSTALCVRLKERGIPYVSYSGYSAVHGADPAAPHIVKPVPXDRLMTALEELLPRTPRVS*
ICChiseqgaiiFebDRAFT_109857732	3300000363	Soil	ILVEHDGLSGAIMDHALSDGDSTALCVRLKERGIPYVSYSGYSAVHGADPAAPHIVKPVPXDRLMTALEELLPRTPRVS*
INPhiseqgaiiFebDRAFT_1003307842	3300000364	Soil	MEHPALRGRSILVVXXEXLIAXDIVQALEKAGANATMTTTVRHALILIEHDGLXGAIMXHGLTDGDSTXVCARXKERGIPYLSYXGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS*
JGI11643J11755_116428703	3300000787	Soil	MDIVDALESAGANTTMTTTARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALE
JGI11643J11755_117486601	3300000787	Soil	ALENAGANATMSTTVRHALILVEHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVSGADPTAPLIVKPVPMHILLTALEELLPSTPRVS*
JGI10216J12902_1106794123	3300000956	Soil	ALEKAGAHATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSKTLCARLKERGIPYISYSGYLAVASADPATPHITKPVQMDVLMTALEELLPGVPRVS*
Ga0062593_1032979291	3300004114	Soil	GAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRSLS*
Ga0063356_1032817121	3300004463	Arabidopsis Thaliana Rhizosphere	VTATTTVRHALILIEHDGLAGAIMDHALGDGDSTEVSVHLKARGIPYVTYSGYAPEEGATLGGPHVTKPAPMDVLLTALSDLLPLTPRIS*
Ga0062595_1024079892	3300004479	Soil	MLIALEIVTALEQAGTYATTTSTVRHALILADHDGLSAAIIDHALSDGDSTALCRRLAARDIPYVSYSGYEPAVGASENALFISKPVPMDELLTGVESLLAARPPR
Ga0062592_1021269121	3300004480	Soil	RAGANATTTTTVRHALILAEHDGLSAAIMDHALSDGDSTKLCARLKERGIPYLSYSGYEPVPGASTNAPHIMKPATMDVLMSAMENLLAGPPRIS*
Ga0062594_1020372521	3300005093	Soil	VSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0070670_1006199751	3300005331	Switchgrass Rhizosphere	HATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSKTLCARLKERGIPYISYSGYLAVASADPATPHITKPVQMDVLMTALEELLPGVPRVS*
Ga0070682_1016208532	3300005337	Corn Rhizosphere	NEVLIAMEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0070668_1015438341	3300005347	Switchgrass Rhizosphere	AALEDAGAFVTATTTVRHALILIEHDGLAGAIMDHALGDGDSTEVSVHLKARGIPYVTYSGYAPKEGAILDAPHVSKPATMETLLTALSDLLPLTPRVS*
Ga0070675_1013805961	3300005354	Miscanthus Rhizosphere	HALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0070659_1004305521	3300005366	Corn Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSEMEKLLAGPRGWS
Ga0070714_1015217161	3300005435	Agricultural Soil	VRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARMAGT*
Ga0070662_1007131262	3300005457	Corn Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRSLS*
Ga0070662_1016615451	3300005457	Corn Rhizosphere	SGAIMDHSLSDGQHQLVRSPERAWYPLSSYSGYTAVSGPDPTAPLIVKPVPMHILLTALEELLPSAPRVS*
Ga0070685_114282382	3300005466	Switchgrass Rhizosphere	LIAMEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0070664_1023200541	3300005564	Corn Rhizosphere	MTTSARHALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0068859_1024995452	3300005617	Switchgrass Rhizosphere	MVAALENAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0068864_1008800182	3300005618	Switchgrass Rhizosphere	VTATTTVRHALIWIEHDGLVAATMDHALADGDSTEVCARLTARDIPYVSYSEGASPDARSSKPQSMNTLLGEVEKLLICKDSQGGRSL*
Ga0068863_1015669862	3300005841	Switchgrass Rhizosphere	QTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVCGRLKARGIPYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0068858_1006545871	3300005842	Switchgrass Rhizosphere	AIMDHSLSDGQHQLVRSPERAWYPLSSYSGYTAVSGPDPTAPLIVKPVPMHILLTALEELLPSAPRVS*
Ga0068860_1026231232	3300005843	Switchgrass Rhizosphere	TVRHALILVEHDGLSGAIMDNALSDGDSTALCVRLKERGIPYISYTGYLAVAGADPAARHIAKPVPMDTLMSALEELLPSTPRIS*
Ga0075367_1000415616	3300006178	Populus Endosphere	MTTTVRHALILVEHDGLSGAIMDHALSDGESTALCARLKERGIPYISYSGYLAVSGADPKARHIVKPVPMDTLLSALEELLPSKPRIS*
Ga0075367_102092393	3300006178	Populus Endosphere	ALEKAGAHATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSRSLCARLKERGIPYISYTGYAAVSGADPAAPHIWKPVPMDTLMSALEELLPSTPRIS*
Ga0075428_1001286311	3300006844	Populus Rhizosphere	GWDIREALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTDVCVRLKARGIPYVTYSGYDPVQGAILDAPHVSKPGTMDVLLTALEALLPRTPRVS*
Ga0075428_1001905093	3300006844	Populus Rhizosphere	VTNTVRHALILVEHDGLSAAIMDHALSDGDSIALCARLKERGIPYLSYSGYSAVHGADPDASHIMKPVSMDVLMTALAALLPAVPRVS*
Ga0075428_1002267437	3300006844	Populus Rhizosphere	LIGMDIRAALEAAGAHVTATTTVRHALILIEHDGLAGVILDHALSDGDSTEVRVHLKARGIPYVTYSGYAPEEGATLGGPHVTKPAPMDVLLTALSDLLPLTPRVS*
Ga0075428_1012425241	3300006844	Populus Rhizosphere	MNRLLDGIYERALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTQVCLRLKARGIPYVSYSGYDPVVGASPEAPHVAKPAPMDTLLTALSDLLPLTPRVS*
Ga0075421_1000686511	3300006845	Populus Rhizosphere	EGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSISVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075421_1005295671	3300006845	Populus Rhizosphere	EGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSIAVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPMRVS*
Ga0075421_1005553433	3300006845	Populus Rhizosphere	IREALEKAGAHVTSTTTARHALLLIEGDGLAGAIMDHALADGDSTEVCARLKARGIPYVSYSGYEPVTGASLDAPFVSKPGTMDTLLAALEGVLPRTPRIS*
Ga0075431_1001669401	3300006847	Populus Rhizosphere	MNRLLDGIYERALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTQVCLRLKARGIPYVSYSGYDPVVGASPEAPHVAKPAPMDTLLTALSD
Ga0075431_1002819053	3300006847	Populus Rhizosphere	VIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAISGADLTAPLIVKPVPMHILLTALEELLPSTPRVS*
Ga0075420_1004241871	3300006853	Populus Rhizosphere	KAGAHVTATTTVSHALILVEHDGLAGAIMDHALKDGDSTELCARLIAQGIPYVSYSGFDPVKGASPDAPFVNKPASMNTLLGVLEKLLIARKAVP*
Ga0075420_1014856061	3300006853	Populus Rhizosphere	MDIVAALENAGANATMTTTVRHALILVEHDGLSGAIMDHALSDGDSTALCVRLKERGIPYVSYSGYSAVHGADPAAPHIVKPVPMDRLMTALEELLPRTPRVS*
Ga0075420_1017301022	3300006853	Populus Rhizosphere	TTARHALLLIEGDGLAGAIMDHALADGDSTEVCARLKARGIPYVSYSGYEPVTGASLDAPFVSKPGTMDTLLAALEGVLPRTPRIS*
Ga0075425_1001673875	3300006854	Populus Rhizosphere	LIEHDGLSGAIMDHGLTDGDSTRVCARLKERGIPYLSYSGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS*
Ga0075434_1006916322	3300006871	Populus Rhizosphere	VLIGMDIRKALEAAGAHVTATTTVRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVEGASPGAPFVSKPTSMNTLLGVLEKLLIARMAGT*
Ga0075429_1006069544	3300006880	Populus Rhizosphere	IGWDIREALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTEVCVRLKARGIPYVTYCGYNPVEGAILDAPHVSKPATMDVLLTALEALLPRTPRVS*
Ga0075429_1016891521	3300006880	Populus Rhizosphere	IAMDIVAALENAGAHATMTTTVRHALILVEHDGLSGVIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAISGADLTAPLIVKPVPMHILLTALEELLPSTPRVS*
Ga0079215_109155811	3300006894	Agricultural Soil	MLIGMDIRSALEEAGAHVTATTTVRHALILVEHDGLAGAIMDHALADGDSTELCARLLARGIPYVSYSGFDPVKGASPDAPFVSKPSSMNTLLGVLEKLLIARA*
Ga0075424_1001288428	3300006904	Populus Rhizosphere	ALILVNHDGLAGAIMDHALADGDSTELCARLTARDIPYVSYSGFDPVKGADPDAPFVSKPANMDTLLTALEKLLIGRTHK*
Ga0075424_1006047132	3300006904	Populus Rhizosphere	ATMTTTSRHALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS*
Ga0075436_1003579911	3300006914	Populus Rhizosphere	HALILVNHDGLAGAIMDHALADGDSTELCARLTARDIPYVSYSGFDPVKGADPDAPFVSKPANMDTLLTALEKLLIGRTHK*
Ga0079219_119803911	3300006954	Agricultural Soil	NHDGLAGAIMDHGLSDGDSSEVCARLKARGIPYVSYSLYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRVS*
Ga0075419_111097452	3300006969	Populus Rhizosphere	ADHDGLAGAIMDHGLTDGDSTIVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALEDLLSGRPVRVS*
Ga0111539_128539102	3300009094	Populus Rhizosphere	AKALEGAGANATLTTTARHAMILADHDGLAGAIMDHGLTDGDSMAVCARLKERGIPYISYTGYAVVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0111539_131264821	3300009094	Populus Rhizosphere	SAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYTGYAAVAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRLS*
Ga0105245_119707591	3300009098	Miscanthus Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVCARLKARGIPCVSYSGYEPVPGADPDAPFITKPVSMNALMSAMEDL
Ga0075418_101576541	3300009100	Populus Rhizosphere	MDIAKALESAGANATMTTSARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075418_102305455	3300009100	Populus Rhizosphere	AGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSTLVCARLKERGIPYISYTGYAAVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075418_115331341	3300009100	Populus Rhizosphere	NATMTTTARHAMILADHDGLAGAIMDHGLTDGDSISVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0075418_126650691	3300009100	Populus Rhizosphere	ATTTVRHALILIEHDGLAGAIMDHALADGDSTDVCVRLKARGIPYVTYSGYDPVQGAILDAPHVSKPGTMDVLLTALEALLPRTPRVS*
Ga0105247_102602861	3300009101	Switchgrass Rhizosphere	EVLIAMEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRWS*
Ga0105247_107817392	3300009101	Switchgrass Rhizosphere	ENAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSTEVCARLKARGIPYISYSGYEPVPGADPDAPFIAKPESMDVLLSAMEKLLAEPRRPIE*
Ga0105091_104381191	3300009146	Freshwater Sediment	MDIRAALEGAGAQVTQTTTVRHALILIEHDGLAGAIMDHALGDGDSTEVCARLKARGIPYVTYSGYDPVEGCLGAPHVSKPATMDTLLTALSDLLPIPPRVSWAIRTQYLAGALTG*
Ga0105091_106648111	3300009146	Freshwater Sediment	TTDTVRHALILAEHDGLAAAIMDHALSDGDSTQLCARLKARGIPYVSYSGYGPVEGASENLVSISKPVTMDVLMNALEGLLVGKPPRLS*
Ga0114129_129643161	3300009147	Populus Rhizosphere	KAGAHVTSTTTARHALLLIEGDGLAGAIMDHALADGDSTEVCARLKARGIPYVSYSGYEPVTGASLDAPFVSKPGTMDTLLAALEGVLPRTPRIS*
Ga0111538_104969991	3300009156	Populus Rhizosphere	ATTTVRHALILVEHDRLAAAIMDHALADGDSTELCARLTARGIPYISYSGFVPGQGASTNAPFVSKPASMDTLLGAVEKLLVGRPASATRPNAE*
Ga0111538_111803892	3300009156	Populus Rhizosphere	MNRLLDGIYERALEKAGANVTATTTVRHALILIEHDGLAGAIMDHALADGDSTQVCLRLKARGIPYVSYSGYDPVVGASPEAPHVAKPAPMDTLLTALSDLLPLT*
Ga0111538_130885521	3300009156	Populus Rhizosphere	MDIAKALENAGANATMTTTARHAMILADHDGLAGAIMDHGLTHGDSTAVCARLNERGIPYISYTGYAAVAGADPAAPHINKPSA*
Ga0111538_137769972	3300009156	Populus Rhizosphere	GANATLTTTARHAMILADHDGLAGAIMDHGLTDGDSMAVCARLKERGIPYISYTGYAVVAGADPAAPHINKPVSMNVLMSALEDLLAGRPVRVS*
Ga0105092_108660691	3300009157	Freshwater Sediment	MTTTVRHALILVEHDGLSGAIMDHALSDGESTALCARLKERGIPYISYSGYSAVSGADPAAPHISKPVPMDTLMTALEELLPNTPRIS*
Ga0105241_114811071	3300009174	Corn Rhizosphere	NHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRGS*
Ga0105242_104726191	3300009176	Miscanthus Rhizosphere	MEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLIGPRRVS*
Ga0105248_117130012	3300009177	Switchgrass Rhizosphere	EQAGAHVTATTTARLLILIEHDGLAAAIMDHALADGDSAEVCARLTARGIPYVSYSGYEPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGGTHGEQTQ*
Ga0105237_113320291	3300009545	Corn Rhizosphere	TATTTARHALILIEHDGLAAAIMDHALADGDSAEVCARLTARGIPYVSYSGYDPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGR*
Ga0134124_103435241	3300010397	Terrestrial Soil	QTTMTTSARHALILINHDGLAGAILSDGDSSEVCARLKARGIPYVSYSGYEPVPGADPDAPFIAKPANMDVLLSAMEKLLAGPRRWS*
Ga0134124_103753042	3300010397	Terrestrial Soil	ALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS*
Ga0134123_104043522	3300010403	Terrestrial Soil	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSEMEKLLAGPRRWS*
Ga0137326_11247481	3300011417	Soil	TATTTVRHALILVEHDGLAGAIMDHALADGDSTELCARLTARGIPYISYSGYDPVKGASPDAPFVSKPASMNTLLGVLEKLLIGRP*
Ga0137432_12314892	3300011439	Soil	GMDIRSALEEAGANVTATTTVRHALILVEHDGLAAAIMDHALRDGDSTELCARLTARGIPYVSYTGFDPVKGASLDAPFVSKPASMNTLLGVLEKLLIARPQRVS*
Ga0157291_103565182	3300012902	Soil	RHALILIEHDGLAGAIMDHALADGDSTEVRVHLKARGIPYVTYSGYDPVAGASPEAPHVSKPATMETLLTALSDLLPLTPRVS*
Ga0157286_100761172	3300012908	Soil	LENAGANATMTTTARHAMILADHDGLAGAIMDHGLNDGDSTAVCARLKERGIPYISYSGYSAVAGADPAAPFISKPVSMDVLMSALEDLLSDRPARVS*
Ga0157308_102878861	3300012910	Soil	RHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIPKLASMDVLLSAMEKLLAGPRRGS*
Ga0164300_106846902	3300012951	Soil	MDIAGTLEKAGAHATMTTTVRHALILVEHDGLSGAIMDHALSDGESTALCARLKERGIPYTSYSGYLAVAGADSAAPHIAKPVHMDTLMVALEELLPSTPRIS*
Ga0164303_114526952	3300012957	Soil	LILVEHDGLSGAIMDHALSDSDSTALCARLKARGIPYLSYSGYSAVAGAYLATPHITKPVPMDFLMSALEELLPSTPRIS*
Ga0164299_112431122	3300012958	Soil	LIEHDGLSGAIMDHGLTDGDSLQVCARLKERGIPYLSYSGYEPVPGASKDAPFITKPVSMDVLMSAMEELLAGPPRVS*
Ga0164301_114574432	3300012960	Soil	AALEQAGAHVTATTTARHALILIEHDGLAAAIMDHALADGDSADVCARLTARGIPYVSYSGYDPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGRRHGEQLQ*
Ga0164308_122775892	3300012985	Soil	EHDGLSGAILDRALADSDSTALCARLKERGISYISYSGYAAVSGADPTAPHIVKPVPMHILLTALEELLPSTPRVS*
Ga0157378_109065933	3300013297	Miscanthus Rhizosphere	LILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDARFSAKRASRDMLRVAMEKLLAGPMRGS*
Ga0157375_104823652	3300013308	Miscanthus Rhizosphere	MEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIVKPANMDVLLSEMEKLLAGPRGWS*
Ga0157375_128578991	3300013308	Miscanthus Rhizosphere	TTTVRHALILIEHDGLSGAIMDHGLSDGDSTNLCARLKERGIPYISYSGYVADAGADQAAPHITKPVHMDVLMSALEELLPSTPRNS*
Ga0163163_133066091	3300014325	Switchgrass Rhizosphere	DIAGALEKAGAHATMTTTVHHALILVEHDGLSGAIMDHALSDGESTALCVRLKERGIPYISYTGYLAVAGADPAARHIAKPVPMDTLMSALEELLPSTPRIS*
Ga0157380_100862592	3300014326	Switchgrass Rhizosphere	LLIALDIVQALENAGANATMTTTARHAMILADHDGLAGAIMDHGLNDGDSTAVCARLKKRGIPYISYSGYSAVAGADPAAPFISKPVSMDVLMSALEDLLSGRPARVS*
Ga0157380_131030011	3300014326	Switchgrass Rhizosphere	EKAGARTTMTTTVRHALILVEHDGLSGAIMDHALSDGDSTALCARLKKRGIPYISYSGYSAVSGADPAAPHIVKPVHMDTLMTALEELLPSTPRIS*
Ga0157379_107127451	3300014968	Switchgrass Rhizosphere	ILIEHDGLAAAIMDHALADGDSADVCARLTARGIPYVSYSGYDPVKGASPDAPFVSKPESMNTLLGVVEKLLIGGRRHGEQMQ*
Ga0132255_1024072261	3300015374	Arabidopsis Rhizosphere	ENEVLIAMEIVSALEDAGAQTTMTTSARHAMILINHDGLAGAIMDHGLSDGDSSEVCARLKARGILYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS*
Ga0163161_101372183	3300017792	Switchgrass Rhizosphere	VVEDELLIAMAIVQALEGAGANATMTTTVRHALILVEHDGLSAAILGHALGECDSTELCARLKARGIPYLSYSGYGRVKGASAPHISKPAS
Ga0190266_107418522	3300017965	Soil	TNTARHAMILADHDGLAGAIMDHGLTDGDSTAVCARLKERGIPYISYSGYSSVSGADADAPFISKPVSMSVLMSALENLLAGRPVRVS
Ga0190265_117748781	3300018422	Soil	TPHRDGYCKGLEDAGANATMTTTARHALILIEHDGLAGAIMDHGLTDGDSTTVCVRLKERGIPYVSYSGYEPVKGASLDASHVMKPESMDVLMSAMEKVLARAPRIS
Ga0190265_125049951	3300018422	Soil	TATTTVRHALILVEHDGLSAAIMDHALADGDSTELCVRLRARGIPYVSFSGFDPVKGASPDAPHVSKPATMDVLLSTLAGLLVGRPDRIS
Ga0190274_105405073	3300018476	Soil	EKAGAHATMTTTVRHALILVEHDGLSGAIMDHGLSDGDSKTLCARLKERGIPYISYSGYLAVASADPATPHITKPVQMDVLMTALEELLPGVPRVS
Ga0190274_117631282	3300018476	Soil	MDIAQALERAGANATTTTTVHHALILVEHDGLAAAIMDHALKDGDSTELCARLKERGIPYVSYSGFDPVKVASMDAPHIMKPESMDVLMSAVEELLAGPPGVS
Ga0190264_103614792	3300019377	Soil	AALEEAGAFVTATTTVRHALILVEHDGLSAAIMDHALADGDSTELCVRLRARGIPYVSFSGFDPVKGASPDAPHVSKPATMDVLLSTLAGLLVGRPDRIS
Ga0210399_110900981	3300020581	Soil	TVRHALILVKHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARMAGT
Ga0210404_102414743	3300021088	Soil	LIEHDGLSGAIMDHGLTDGDSTRVCARLKERGIPYLSYSGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS
Ga0210406_102370451	3300021168	Soil	KRWCERHHDDHRSPCADLIEHDGLSGAIMDHGLTDGDSTRVCARLKERGIPYLSYSGYEPVPGASADAPYITKPVSMDVLMSAMEELLAGPPRVS
Ga0210408_114286521	3300021178	Soil	AAGAHVTATTTVRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGADPDAPFVSKPANMDTLLTALEKLLIGRAHK
Ga0210384_103850741	3300021432	Soil	VTATTTVRHALILVNHDGLAGAIMDHALADGDSTELCARLTARGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARMAGT
Ga0179589_106235092	3300024288	Vadose Zone Soil	MTTTVRHAIILIAHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVAGADRAAPHITKPVPMDFLISALEELLPSTPRVS
Ga0179591_12222452	3300024347	Vadose Zone Soil	MTTTVRHALILIAHDGLSGAIMDHSLSDGDSTNLCARLKERGIPYISYSGYSAVAGADQAAPHITKPVPMDFLMSALEELLPSTPRVS
Ga0207644_112518662	3300025931	Switchgrass Rhizosphere	ATMTPTSRHALILIEHDGLAGAIMDHGLSDGDSTKVCARLKERGIPYISYSGYDPVPGADPNAPHINKPVSMDVLMSAMEKLLAGPERVS
Ga0207691_106335083	3300025940	Miscanthus Rhizosphere	TTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRWS
Ga0207674_109584531	3300026116	Corn Rhizosphere	WRAEVVIVVCALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIAKPASMDMLLGAMEKLLAGPRRGS
Ga0207675_1019402012	3300026118	Switchgrass Rhizosphere	HVTATTTARHALILIEHDGLAAAIMDHALADGDSAKVCARLTARGIPYVSYSGYDPVKGASPDAPFVRKPESMNTLLGVVEKLLIGGR
Ga0207683_112703081	3300026121	Miscanthus Rhizosphere	EIRAALEDAGAFVTATTTVRHALILLEHDGLAGAIMDHALGDGDSTEVSVHLKARGIPYVTYSGYAPKEGAILDAPHVSKPATMEALLTALSDLLPLTPRVS
Ga0209814_103661452	3300027873	Populus Rhizosphere	MLIGMDIRDALEKAGAHVTATTTVRHALILVEHDSLAGAIMDHALRDGDSTELCARLTAQGIPYVSYSGFDLVKGASPDVPFVRKPASMNTLLGVLEKLLIARKAVP
Ga0209382_1001365122	3300027909	Populus Rhizosphere	ALEGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSISVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPVRVS
Ga0209382_101737956	3300027909	Populus Rhizosphere	AGAHVTATTTVRHALILIEHDGLAGVILDHALSDGDSTEVRVHLKARGIPYVTYSGYAPEEGATLDGPHVTKPALMDVLLTALSDLLPLTPRIS
Ga0209382_104811891	3300027909	Populus Rhizosphere	ALEGAGANATMTTTARHAMILADHDGLAGAIMDHGLTDGDSIAVCARLKERGIPYISYTGYAAIAGADPDAPHINKPVSMNVLMSALEDLLAGRPMRVS
Ga0268265_116188572	3300028380	Switchgrass Rhizosphere	VEHDGLSAAIVDHGLNDGDSTQLCARLKARGIPYVSYSGFDPVEGADNDAPYISKPASMETILSTVEAMLKAPARIS
Ga0268264_103465813	3300028381	Switchgrass Rhizosphere	MEIVSALEDAGAQTTMTTSARHALILINHDGLAGAIMDHGLSDGDSSEVGARLKARGIPYVSYSGYEPVPGADPDAPFIVKPANMDVLLSAMEKLLAGPRRWS
Ga0247822_114241071	3300028592	Soil	IDIRSALEEAGAHVTSTTTVRHALMLAEDDGLAGAIMDHALKDGDSTELCARLIAQGIPYVSYSGFDLVKGASPDAPFVNKPASMNTLLGVLEKLLIARKAVP
Ga0307302_106706881	3300028814	Soil	VRHALILVEHDGLSGAIMDHALADGDSTELCIRLKARGIPYVSYSGFDPVKGADPEAPWVGKPASMDTLLNTLAGLLVARAERVS
Ga0247827_107349091	3300028889	Soil	SLAVILVEHDGLAGAIMDHALADGDSTELCARLTARGIPYISYSGYDPVKGASPDAPFVSKPASMNTLLGVLEKLLIGRP
Ga0310813_115175092	3300031716	Soil	MDIVAALEKAGAHATMTTTVRHALILVEHDGLSGAIMDHALSDGDSTALCARLKKRGIPYISYSGYAAVSGADPAAPHIVKPVPMHILLTALEELLPSTLRIS
Ga0310903_106397831	3300032000	Soil	KAGAHVTATTTVRHALILVEHDGLAGAIMDHALRDGDSTELCARLTAQGIPYVSYSGFDPVKGASPDAPFVSKPASMNTLLGVLEKLLIARKAVP
Ga0247829_105591401	3300033550	Soil	EEAGAHVTSTTTVRHALMLAEDDGLAGAIMDHALKDGDSTELCARLTAQGIPYVSYSGFDLVKGASPDVPFVRKPASMNTLLGVLEKLLIARKAVP
Ga0247830_100523523	3300033551	Soil	MLIGMDIRSALEQAGAHVTATTTVRHALILVEHDGLAGAIMDHALADGDSTELCARLTARAIPYISYSGYDPVKGASPDAPFVSKPASMNTLLGVLEKLLIGRP
Ga0364937_151277_235_474	3300034113	Sediment	LIEHDGLAAAIMDHALADGDSTDLCARLLTRGIPYVSYSGFDPVKGASLDAPFVSKPATMDTLLSAVESLLAGQPHRIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F066930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences