Metagenome / Metatranscriptome Family F066832

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066832
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	55 residues
Representative Sequence	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTGER
Number of Associated Samples	96
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.68 %
% of genes near scaffold ends (potentially truncated)	17.46 %
% of genes from short scaffolds (< 2000 bps)	80.16 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.143 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (23.016 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.730 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.33% β-sheet: 0.00% Coil/Unstructured: 41.67%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF07690	MFS_1	24.60
PF13417	GST_N_3	3.97
PF00925	GTP_cyclohydro2	2.38
PF13594	Obsolete Pfam Family	1.59
PF00144	Beta-lactamase	1.59
PF16822	ALGX	0.79
PF07973	tRNA_SAD	0.79
PF07969	Amidohydro_3	0.79
PF00926	DHBP_synthase	0.79
PF04828	GFA	0.79
PF01227	GTP_cyclohydroI	0.79
PF01636	APH	0.79
PF10282	Lactonase	0.79
PF08352	oligo_HPY	0.79
PF02543	Carbam_trans_N	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	2.38
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.59
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.59
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.59
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	0.79
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.79
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
All Organisms	root	All Organisms	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
cellular organisms	root	All Organisms → cellular organisms	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	32.54 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.78 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	13.49 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.59 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.49 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.59 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.79 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.79 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.49 %
Acidiphilium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium	1.59 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
Rhodoblastus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus	0.79 %
unclassified Burkholderiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.49 %
unclassified Acidiphilium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium	1.59 %
unclassified Rhodoblastus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → unclassified Rhodoblastus	0.79 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.14 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.49 %
Acidiphilium sp. 37-64-53	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 37-64-53	1.59 %
Rhodoblastus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → unclassified Rhodoblastus → Rhodoblastus sp.	0.79 %
Burkholderiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10010094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6310	Open in IMG/M
3300000567\|JGI12270J11330_10036411	Not Available	2806	Open in IMG/M
3300004082\|Ga0062384_100565833	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300004082\|Ga0062384_100705593	Not Available	695	Open in IMG/M
3300004091\|Ga0062387_101731932	Not Available	508	Open in IMG/M
3300004479\|Ga0062595_101447855	Not Available	629	Open in IMG/M
3300004635\|Ga0062388_101731551	Not Available	639	Open in IMG/M
3300004635\|Ga0062388_101966722	Not Available	604	Open in IMG/M
3300005458\|Ga0070681_10326137	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300005534\|Ga0070735_10027957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	3956	Open in IMG/M
3300005538\|Ga0070731_10284497	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1098	Open in IMG/M
3300005542\|Ga0070732_10205122	Not Available	1178	Open in IMG/M
3300005542\|Ga0070732_10772413	Not Available	586	Open in IMG/M
3300005542\|Ga0070732_10960708	Not Available	522	Open in IMG/M
3300005602\|Ga0070762_11193567	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300005607\|Ga0070740_10302122	Not Available	640	Open in IMG/M
3300005921\|Ga0070766_10082379	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300005921\|Ga0070766_11230100	Not Available	518	Open in IMG/M
3300005952\|Ga0080026_10128859	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300006050\|Ga0075028_100170063	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300006354\|Ga0075021_10504041	Not Available	767	Open in IMG/M
3300010043\|Ga0126380_11054147	Not Available	689	Open in IMG/M
3300010048\|Ga0126373_10521089	Not Available	1234	Open in IMG/M
3300010048\|Ga0126373_11297638	Not Available	794	Open in IMG/M
3300010361\|Ga0126378_11099069	Not Available	896	Open in IMG/M
3300010361\|Ga0126378_11605144	Not Available	738	Open in IMG/M
3300010376\|Ga0126381_102662378	Not Available	715	Open in IMG/M
3300010880\|Ga0126350_11009183	Not Available	2583	Open in IMG/M
3300010880\|Ga0126350_12067841	Not Available	564	Open in IMG/M
3300011120\|Ga0150983_10574253	Not Available	591	Open in IMG/M
3300011271\|Ga0137393_10494911	Not Available	1049	Open in IMG/M
3300012078\|Ga0153999_1015784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1935	Open in IMG/M
3300012180\|Ga0153974_1035441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1086	Open in IMG/M
3300014056\|Ga0120125_1050692	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300014162\|Ga0181538_10740017	Not Available	508	Open in IMG/M
3300014169\|Ga0181531_10755924	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300014169\|Ga0181531_11079341	Not Available	505	Open in IMG/M
3300014201\|Ga0181537_10019138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4863	Open in IMG/M
3300014495\|Ga0182015_10001546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29928	Open in IMG/M
3300014501\|Ga0182024_10003911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34881	Open in IMG/M
3300014501\|Ga0182024_10011344	All Organisms → cellular organisms → Bacteria → Proteobacteria	17914	Open in IMG/M
3300014501\|Ga0182024_10488982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 37-64-53	1568	Open in IMG/M
3300014657\|Ga0181522_11007497	Not Available	516	Open in IMG/M
3300015245\|Ga0137409_10783456	Not Available	788	Open in IMG/M
3300015371\|Ga0132258_13623040	Not Available	1056	Open in IMG/M
3300017932\|Ga0187814_10341824	Not Available	577	Open in IMG/M
3300017936\|Ga0187821_10228855	Not Available	721	Open in IMG/M
3300017943\|Ga0187819_10548120	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300017972\|Ga0187781_10066014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 37-64-53	2491	Open in IMG/M
3300017975\|Ga0187782_10328097	Not Available	1157	Open in IMG/M
3300017995\|Ga0187816_10337146	Not Available	665	Open in IMG/M
3300018006\|Ga0187804_10338207	Not Available	660	Open in IMG/M
3300018007\|Ga0187805_10135310	Not Available	1119	Open in IMG/M
3300018007\|Ga0187805_10189817	Not Available	938	Open in IMG/M
3300018042\|Ga0187871_10012675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5686	Open in IMG/M
3300018060\|Ga0187765_11357469	Not Available	506	Open in IMG/M
3300018085\|Ga0187772_10606682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	779	Open in IMG/M
3300020579\|Ga0210407_10771623	Not Available	743	Open in IMG/M
3300020580\|Ga0210403_11268221	Not Available	564	Open in IMG/M
3300020582\|Ga0210395_10515266	Not Available	900	Open in IMG/M
3300020582\|Ga0210395_10524543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	891	Open in IMG/M
3300020582\|Ga0210395_10783411	Not Available	711	Open in IMG/M
3300020583\|Ga0210401_10710343	Not Available	866	Open in IMG/M
3300021170\|Ga0210400_11581354	Not Available	518	Open in IMG/M
3300021181\|Ga0210388_10181964	Not Available	1835	Open in IMG/M
3300021362\|Ga0213882_10191406	Not Available	843	Open in IMG/M
3300021384\|Ga0213876_10147611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1251	Open in IMG/M
3300021401\|Ga0210393_10317407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1267	Open in IMG/M
3300021401\|Ga0210393_10445539	Not Available	1057	Open in IMG/M
3300021403\|Ga0210397_10181133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1494	Open in IMG/M
3300021420\|Ga0210394_10254168	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300021432\|Ga0210384_10449685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1160	Open in IMG/M
3300021474\|Ga0210390_11555935	Not Available	522	Open in IMG/M
3300021475\|Ga0210392_10167841	Not Available	1512	Open in IMG/M
3300021477\|Ga0210398_10004941	All Organisms → cellular organisms → Bacteria → Proteobacteria	12433	Open in IMG/M
3300021477\|Ga0210398_10161245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1825	Open in IMG/M
3300021477\|Ga0210398_10519926	Not Available	969	Open in IMG/M
3300021479\|Ga0210410_10645114	Not Available	938	Open in IMG/M
3300021479\|Ga0210410_11295909	Not Available	621	Open in IMG/M
3300021559\|Ga0210409_10497761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1082	Open in IMG/M
3300021560\|Ga0126371_10032461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4901	Open in IMG/M
3300022840\|Ga0224549_1023647	Not Available	843	Open in IMG/M
3300027625\|Ga0208044_1149326	Not Available	649	Open in IMG/M
3300027662\|Ga0208565_1187869	Not Available	591	Open in IMG/M
3300027854\|Ga0209517_10000647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57982	Open in IMG/M
3300027854\|Ga0209517_10057945	Not Available	2854	Open in IMG/M
3300027857\|Ga0209166_10273118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300027867\|Ga0209167_10051858	All Organisms → cellular organisms → Bacteria	2018	Open in IMG/M
3300027867\|Ga0209167_10294552	Not Available	877	Open in IMG/M
3300027894\|Ga0209068_10162821	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300027895\|Ga0209624_10555367	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300027986\|Ga0209168_10073322	Not Available	1793	Open in IMG/M
3300028906\|Ga0308309_10038845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3342	Open in IMG/M
3300030007\|Ga0311338_11373542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300030057\|Ga0302176_10460034	Not Available	514	Open in IMG/M
3300030490\|Ga0302184_10089384	All Organisms → cellular organisms → Bacteria → Proteobacteria	1411	Open in IMG/M
3300030617\|Ga0311356_11279932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300031231\|Ga0170824_123543019	Not Available	1245	Open in IMG/M
3300031234\|Ga0302325_11824595	Not Available	761	Open in IMG/M
3300031236\|Ga0302324_100500801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1774	Open in IMG/M
3300031236\|Ga0302324_101296584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962	Open in IMG/M
3300031525\|Ga0302326_11983935	Not Available	753	Open in IMG/M
3300031708\|Ga0310686_105329134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1052	Open in IMG/M
3300031708\|Ga0310686_113010773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2957	Open in IMG/M
3300031715\|Ga0307476_11150234	Not Available	569	Open in IMG/M
3300031753\|Ga0307477_10101255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2003	Open in IMG/M
3300031962\|Ga0307479_11933692	Not Available	540	Open in IMG/M
3300032770\|Ga0335085_10002633	All Organisms → cellular organisms → Bacteria → Proteobacteria	33093	Open in IMG/M
3300032782\|Ga0335082_10802895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	803	Open in IMG/M
3300032783\|Ga0335079_10706674	Not Available	1053	Open in IMG/M
3300032783\|Ga0335079_11043558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	831	Open in IMG/M
3300032805\|Ga0335078_12742217	Not Available	501	Open in IMG/M
3300032895\|Ga0335074_10138913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3104	Open in IMG/M
3300032895\|Ga0335074_10168765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2732	Open in IMG/M
3300032895\|Ga0335074_10175904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Rhodoblastus → unclassified Rhodoblastus → Rhodoblastus sp.	2657	Open in IMG/M
3300032895\|Ga0335074_10605622	Not Available	1092	Open in IMG/M
3300032896\|Ga0335075_11207137	Not Available	656	Open in IMG/M
3300032898\|Ga0335072_10953079	Not Available	795	Open in IMG/M
3300032954\|Ga0335083_11158537	Not Available	601	Open in IMG/M
3300032955\|Ga0335076_10685883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906	Open in IMG/M
3300033134\|Ga0335073_10056802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5203	Open in IMG/M
3300033134\|Ga0335073_11086494	Not Available	817	Open in IMG/M
3300033134\|Ga0335073_11155514	Not Available	782	Open in IMG/M
3300033977\|Ga0314861_0385921	Not Available	616	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.83%
Host-Associated	Host-Associated	3.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.37%
Aquatic	Environmental → Aquatic	17.46%
Plants	Host-Associated → Plants	1.59%
Fungi	Host-Associated → Fungi	1.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.43%
Freshwater	Environmental → Aquatic → Freshwater	15.08%
Peat	Environmental → Terrestrial → Peat	7.14%
Sediment	Environmental → Aquatic → Sediment	2.38%
Mycelium	Host-Associated → Fungi → Mycelium	1.59%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.79%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	21.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.14%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.38%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.59%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	17.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.14%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.38%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.70%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	7.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.35%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.76%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.38%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.59%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.59%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.79%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.79%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.79%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012078	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC083 MetaG	Host-Associated	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100100945	3300000567	Peatlands Soil	MQAFLARRGTSLISAVLGGFGVFCVVYSFSTPHIAAEALILLGAALAVSYFSTRS*
JGI12270J11330_100364116	3300000567	Peatlands Soil	MESKETGTMLSAFLMQRMSSLISAVLGGYGVFCVIYSFSSPEVAGRALVLLGAALALSYFSRRQ*
Ga0062384_1005658331	3300004082	Bog Forest Soil	MLQAFLMRRASSLIAAVLGGFGVFCVIYSFAAPHVAAQALILLGAALAVSYFSQRQ*
Ga0062384_1007055932	3300004082	Bog Forest Soil	MLQAFLVQRASSLIAAVLGGFGVFCVIYSFAAPHVAAQALILLGAALAVSYFSQRQ*
Ga0062384_1014032161	3300004082	Bog Forest Soil	MRSALWTISATLGGVGVFCVIYSFVAPHLAAHGLILLGTALAIVYFTK
Ga0062387_1017319321	3300004091	Bog Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTGER*
Ga0062595_1014478552	3300004479	Soil	MLQAFLVQRATALLSALLGGFGVFCVLYSFSTPDIAAEALILLGAALALSYFSIRK*
Ga0062388_1017315512	3300004635	Bog Forest Soil	GAGRMLQASLMQRAASLISAVLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTQQR
Ga0062388_1019667222	3300004635	Bog Forest Soil	MQRALSLVCALLGGFGVFCVIYSFSTPHVAMQALILLGAALAISYFTKER*
Ga0070681_103261372	3300005458	Corn Rhizosphere	MLQAFLVQRTLSLLSALLGGFGVFCVLYSFAAPEIAAKALILLGAALTLSYFSTRR*
Ga0070735_100279572	3300005534	Surface Soil	MLSELLMRRASTLIGAALGGYGIFCVTYSFTSPELAGKALILLGAALALSYFSDSSL*
Ga0070731_102844974	3300005538	Surface Soil	MFQSYLVQRATALLSAVLGGCGVFCVLYSFSTPDVAAEALILLGAALAVSYFSTRQ*
Ga0070732_102051222	3300005542	Surface Soil	AFLMQRAMAVLSAVLGGFGVFCVIYSFSTPHIAAEALILLGAALAVSYFTPRQ*
Ga0070732_107724131	3300005542	Surface Soil	MLQAFLMQRALSLLSALLGGFGVFCVLYSFAATEIAAKALILLGAALLLSYFSSRR*
Ga0070732_109607082	3300005542	Surface Soil	MFQAFLMQRATALISALLGGFGIFCVIYSFSNPHIAAEALILLGAALAVSYFSERR*
Ga0070762_111935672	3300005602	Soil	MLQTFLVQRATALLSAVLGGFGVFCVLYSFSAPDIAAEALILLGAALAVSYFSTRQ*
Ga0070740_103021222	3300005607	Surface Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAQALILLGAALAVSYFTAEK*
Ga0070766_100823792	3300005921	Soil	MLHAFFMQRALSLVAALLGGFGVFCVIYSFAAPDVAAQALILLGAALAVSYFSGRG*
Ga0070766_112301001	3300005921	Soil	MLSAFFMQRALSLVAALLGGFGVFCVIYSFAAPDVAAQALILLGAALAVSYFSGRG*
Ga0080026_101288592	3300005952	Permafrost Soil	MLQAFLVGRTLSVLSALLGGFGVFCVLYSFAAPEIAAKALILLGAALTLGYFNTRQ*
Ga0075028_1001700633	3300006050	Watersheds	MVQSFLMQRALSLVSAVLGGTGVFCVIYSFTAPDIAAQALILLGAALALSYFSGRA*
Ga0075021_105040412	3300006354	Watersheds	MLQEFLVQRATALLSALLGGFGVFCVLYSFSTPDIAAEALILLGAALALSYFSIRK*
Ga0126380_110541472	3300010043	Tropical Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAQALILLGAALAVSYFTSER*
Ga0126373_105210892	3300010048	Tropical Forest Soil	MLQAFFVQRALSLVCALLGGFGVFCVIYSFSAPHIAAQALILLGSALAVSYFSSER*
Ga0126373_112976381	3300010048	Tropical Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAEALILLGAALAVSYFTSER*
Ga0126378_110990692	3300010361	Tropical Forest Soil	FMQRALSLVCALLGGFGVFCVVYSFSTPHVAAEALILLGAALAVSYFTSER*
Ga0126378_116051441	3300010361	Tropical Forest Soil	MLQAFLMQRALSLVCALLGGFGVFCVIYSFSTPHVAAQALILLGAALAVSYFTQEQR*
Ga0126381_1026623782	3300010376	Tropical Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHVAAQALILLGAALAVSYFTSER*
Ga0126350_110091832	3300010880	Boreal Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTAER*
Ga0126350_120678411	3300010880	Boreal Forest Soil	MLPSLSMRQFLSLLSAMLGGYGVFCVVYSFVAPDIAAQALILLGGALALSYCAGRQ*
Ga0150983_105742532	3300011120	Forest Soil	EEFEARAMFQASLMQRVSSLIGAILGGYGVFCVIYSFSSPDVAGQALVLLGAALALSYFSRPR*
Ga0137393_104949112	3300011271	Vadose Zone Soil	MLQAFFMQRALSLVSALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVGYFTGERR*
Ga0153999_10157841	3300012078	Attine Ant Fungus Gardens	MLQAFFMQRALSLVCALLGGFGVFCVLYSFSTPHIAAQALILLGAALAINYFSPQS*
Ga0153974_10354411	3300012180	Attine Ant Fungus Gardens	MLQAFFMQRALSVVCALLGGFGVFCVIYSFSTPHVAAQALILLGAALAISYFTKERQH*
Ga0120125_10506923	3300014056	Permafrost	LMQRAAAVITALLGGFGVFCVLYSFAAPEIAAKALILLGAALTLGYFNTRQ*
Ga0181538_107400172	3300014162	Bog	MLSAFFMQRALSLVAALLGRFGVFCVIYSFAAPDVAAQALILLGAA
Ga0181531_107559241	3300014169	Bog	RRELEGIAMMQAFLMQRALSLITATLGGFGVFCVLYSFASPHIAAQALFLLGAALVLSYFCRQS*
Ga0181531_110793411	3300014169	Bog	MLQAFFMQRALSLVCAVLGGFGVFCVIYSFSAPHVAAQALILLGAALAISYFTTER*
Ga0181537_100191382	3300014201	Bog	MLQASFMQRCLSLVGMMLGGFGVFCVVYSFSTPHVAAQALILLGAAMAISYFTKEG*
Ga0182015_1000154613	3300014495	Palsa	MLQAFLMQRATTVLAAVLGGAGVFCVIYSFSAPDVAAQALILLGAALALSHFSARG*
Ga0182024_1000391127	3300014501	Permafrost	MLQAFLMQRALSLIAALLGGCGVFCVMYSFSTPDVAAQALLLLGAALAVSYFSR*
Ga0182024_100113448	3300014501	Permafrost	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTTES*
Ga0182024_104889821	3300014501	Permafrost	MLQAFFMQRALSLVSALLGGFGVFCVLYSFSTPHIAAQALILLGAALAVSYFTTES
Ga0181522_110074971	3300014657	Bog	MLNSGQRRELEGIAMMQAFLMQRALSLITATLGGFGVFCVLYSFASPHIAAQALFLLGAALVLSYFCRQS*
Ga0137409_107834562	3300015245	Vadose Zone Soil	MLQAFFMQRALSLVSALLGGSGVFCVIYSFSTPHVGAQALILLGAAIAVSYFSGAR*
Ga0132258_136230402	3300015371	Arabidopsis Rhizosphere	MLQAFFMQRALSLVSALLGGFGVFCVVYSFSTPHVAAQALILLGAALAVSYFTSER*
Ga0187814_103418242	3300017932	Freshwater Sediment	MLQAFFMKRALSVVCALLGGFGVFCVIYSFSTPHVAAQALILLCAALAISYFTKEQQH
Ga0187821_102288552	3300017936	Freshwater Sediment	MLHSYFMQRAVALVSAILGGYGVFCVIYSFSRPDLAAQALILLGTALALSYVSNNRS
Ga0187819_105481203	3300017943	Freshwater Sediment	CRMLQAFFMRRALSLVCALLGGFGVFCVIYSFSAPHIAAQALILLGAALAVSYFSNEH
Ga0187781_100660143	3300017972	Tropical Peatland	MLQAQFVQRALSLLCTLLGGFGVFCVLYSFSARDIAAQALILLGAALAVSYFSAER
Ga0187780_113762091	3300017973	Tropical Peatland	LSLVCALLGGFGVFCVVYSFSAPHIAAQALILLGAALAVSYFSNEH
Ga0187782_103280972	3300017975	Tropical Peatland	MLRAFFMQRAMSLVSAMLGGFGVFCVIYSFSTPDIAAQALILLGLALVLNYFSSRE
Ga0187816_103371462	3300017995	Freshwater Sediment	MLQAFFMQRALSVVCALLGGFGVFCVIYSFSTPHVAMQALILLGAALAISYFTKEQH
Ga0187804_103382072	3300018006	Freshwater Sediment	MLQAFFMQRALSVICALLGGFGVFCVIYSFSTPHVAMQALILLGAALAISYFTKEQH
Ga0187805_101353101	3300018007	Freshwater Sediment	MLQAFLMQRAMAVLSALLGGLGVFCVVYSFSTPDIAAEALILLGAALAVSYFTARR
Ga0187805_101898171	3300018007	Freshwater Sediment	MLQAFFMRRALSLVCALLGGFGVFCVVYSFSAPHIAAQALILLGAALAVSYFSNEH
Ga0187871_100126755	3300018042	Peatland	MLSAFFMQRALSLVAALLGGFGVFCVIYSFAAPDVAAQALILLGAALAVSYFSGRG
Ga0187765_113574691	3300018060	Tropical Peatland	MLQAFFAQRVLSLVSALLGGFGVFCVVYSFSTPHIAAQALILLGSALAISYFSTRS
Ga0187772_106066821	3300018085	Tropical Peatland	MLQAFFMQRALSVVCALLGGFGVFCVIYSFSTPHVAMQALILLGAA
Ga0210407_107716232	3300020579	Soil	MLQALFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTGKR
Ga0210403_112682212	3300020580	Soil	MFQAFLMQRASALITAVLGGFGVFCVMYSFAAPHVAAQALILLGAALTMSYFNTRNPQR
Ga0210395_105152661	3300020582	Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAQALILFGAALAVSYFTSER
Ga0210395_105245432	3300020582	Soil	MLQTFLVQRATALLSAVLGGFGVFCVLYSFSAPDIAAEALILLGAALAVSYFSTRQ
Ga0210395_107834112	3300020582	Soil	MLQAFFMQRALSLVCALLGGFGVFCVLYSFSTPHIAAQALILLGAALAINYFSPQS
Ga0210401_107103432	3300020583	Soil	MQRAMALVSALLGGFGVFCVVYSFATPHIAAEALILLGAALAVSYFSTRR
Ga0210400_115813541	3300021170	Soil	MQRALSLVCALLGGFGVFCVIYSFSTPHVAMQALILLGAALAISYFTKER
Ga0210388_101819642	3300021181	Soil	MLQAFFMQRALSLVCSLLGGFGVFCVLYSFSTPHIAAQALILLASALAINYFSPEG
Ga0213882_101914062	3300021362	Exposed Rock	MLQAFLMQRALALVTALVGGVGVFCVIYSFAAPEIAVQGLILLGAALAMSYFTERRR
Ga0213876_101476111	3300021384	Plant Roots	MLQAFLMQRALALVTALVGGVGVFCVIYSFAAPEIAVQGLILLGAALAMSYFAERRR
Ga0210393_103174073	3300021401	Soil	MLQALFMQRALSLVCALLGGFGVFCVIYSFSTPRIAAQALILLGAALAVSYFTGKR
Ga0210393_104455392	3300021401	Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTAER
Ga0210397_101811332	3300021403	Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHVAMQALILLGAALAISYFTKER
Ga0210394_102541682	3300021420	Soil	MQRAMALVSALLGGFGVFCVVYSFATPHIAADALILLGAALAVSYFSTRR
Ga0210384_104496851	3300021432	Soil	MFQAFLMRSSLSLVSALLGGYGVFCVIYSFGAPDIALQALILLSAALSVLYFTDR
Ga0210390_115559351	3300021474	Soil	MFQAFLMRSSLSLVSALLGGYGVFCVIYSFGAPDIALQALILLSAALSV
Ga0210392_101678412	3300021475	Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAQALILLGAALAVSYFTSER
Ga0210398_1000494111	3300021477	Soil	MLQAFFVQRALSLICALLGGFGVFCVLYSFSAPDIAAQALILLGLALALSYFCAER
Ga0210398_101612452	3300021477	Soil	MMQAFLMQRALALLAALLGGFGVFCVIYSFAAPDVAMQALILLGAALAVSYFSNRR
Ga0210398_105199262	3300021477	Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTGKR
Ga0210410_106451142	3300021479	Soil	MLQALFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTAER
Ga0210410_112959092	3300021479	Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAQALILLGAALAVSYFTSES
Ga0210409_104977613	3300021559	Soil	MQRAMALVSALLGGFGVFCVVYSFATPHIAAEALILLGAALAVSYFST
Ga0126371_100324614	3300021560	Tropical Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVVYSFSTPHVAAEALILLGAALAVSYFTSER
Ga0224549_10236472	3300022840	Soil	MLQAFLVQRASSLIAAVLGGFGVFCVIYSFAAPHVAAQALILLGAALAVSYFSQRQ
Ga0208044_11493262	3300027625	Peatlands Soil	VGERGGGRMQAFLARRGTSLISAVLGGFGVFCVVYSFSTPHIAAEALILLGAALAVSYFSTRS
Ga0208565_11878691	3300027662	Peatlands Soil	MESKETGTMLSAFLMQRMSSLISAVLGGYGVFCVIYSFSSPEVAGRALVLLGAALALSYFSRRQ
Ga0209517_1000064747	3300027854	Peatlands Soil	MQAFLARRGTSLISAVLGGFGVFCVVYSFSTPHIAAEALILLGAALAVSYFSTRS
Ga0209517_100579453	3300027854	Peatlands Soil	MLSAFLMQRMSSLISAVLGGYGVFCVIYSFSSPEVAGRALVLLGAALALSYFSRRQ
Ga0209166_102731183	3300027857	Surface Soil	MLQAFLMQRAMAVLSAVLGGFGVFCVIYSFSTPHIAAEALILLGAALAVSYF
Ga0209167_100518582	3300027867	Surface Soil	MFQSYLVQRATALLSAVLGGCGVFCVLYSFSTPDVAAEALILLGAALAVSYFSTRQ
Ga0209167_102945521	3300027867	Surface Soil	MLSELLMRRASTLIGAALGGYGIFCVTYSFTSPELAGKALILLGAALALSYF
Ga0209068_101628211	3300027894	Watersheds	RARGAETMWQAFLVQRATALLSALLGGFGVFCVLYSFSTPDIAAEALILLGAALALSYFSIRK
Ga0209624_105553672	3300027895	Forest Soil	MMQAFLMQRALALLAALLGGFGVFCVIYSFAAPDVAAQALILLGAALAVSYFSGRG
Ga0209168_100733222	3300027986	Surface Soil	MLSELLMRRASTLIGAALGGYGIFCVTYSFTSPELAGKALILLGAALALSYFSDSSL
Ga0308309_100388454	3300028906	Soil	MLHAFFMQRALSLVAALLGGFGVFCVIYSFAAPDVAAQALILLGAALAVSYFSGRG
Ga0311338_113735422	3300030007	Palsa	MLRAFLMQHALSLISALLGGFGVFCVIYSFAEPQLAAQAVVLLGAALAISYFNTR
Ga0302176_104600341	3300030057	Palsa	MFQAFLMQRALSMVSALLGGFGVFCVVYSFSTPHIAAQALILLGAALAVSYFSTRS
Ga0302184_100893842	3300030490	Palsa	LVQRASSLIAAVLGGFGVFCVIYSFAAPHVAAQALILLGAALAVSYFSQRQ
Ga0311356_112799322	3300030617	Palsa	MLQAFFMQRALSLVCAVLGGFGVFCVIYSFSAPHVAAQALILLGAALAIS
Ga0170824_1235430192	3300031231	Forest Soil	MFQASMMQRVSSLIGAILGGYGVFCVIYSFSSPDVAGQALVLLGSALALSYFSRPR
Ga0302325_118245952	3300031234	Palsa	MLPAFLMQRALSLVAALLGGFGVFCVIYSFAAPHVAAQALILLGAALAISYFSGRG
Ga0302324_1005008013	3300031236	Palsa	MLQAFFMQRALSLVCAVLGGFGVFCVIYSFSAPHVAAQALILLGAALAISYFTTER
Ga0302324_1012965842	3300031236	Palsa	MLQAFFMQRALSLVCALLGGCGVFCVIYSFSTPHVAAQALILLGAALAVSYFTLDR
Ga0302326_119839352	3300031525	Palsa	MFQAFLMQRALSMVSALLGGYGVFCVVYSFSTPHIAAQALILLGAALAVSYFSTRA
Ga0310686_1053291342	3300031708	Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTTES
Ga0310686_1130107732	3300031708	Soil	MLQTFLMQRALSLVGAVMGGFGVFCVIYSFSTPYIAAQALILLGAALAISYFTTER
Ga0307476_111502341	3300031715	Hardwood Forest Soil	MLQAFFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTAES
Ga0307477_101012552	3300031753	Hardwood Forest Soil	MQRAMALVSALLGGFGVFCVVYSFATPHIAAEALFLLGAALAVSYFSTRR
Ga0307479_119336921	3300031962	Hardwood Forest Soil	FFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTLER
Ga0335085_1000263331	3300032770	Soil	MLGAFFTQRALSVVCALLGGFGVFCVIYSFSTPDIAAQGLILLGAALAVSYFSPEK
Ga0335082_108028952	3300032782	Soil	MFHACLLQRASAVISALLGGFGVFCVIYSFTDPQMAAQALVLLGAAFAVNYFSTHKD
Ga0335079_107066742	3300032783	Soil	MLHAFLMQRALSLIAALLGGCGVFCVVYSFSTPDVALQALILLGAALAVSYFSTRGS
Ga0335079_110435582	3300032783	Soil	MFQAFLMQRAMAVLSALLGGLGVFCVVYSFSTPDIAAEALILLGAALAVSYFTARG
Ga0335078_127422171	3300032805	Soil	MFQTLLMQRVTSLITALLGGFGVFCVIYSFAAPDVAAQALMLLGAALAVSYFNTRS
Ga0335074_101389133	3300032895	Soil	MLQAFFVQRLMSLVSALLGGFGVFCVVYSFSTPHIAAQALILLGAALALSYFSPR
Ga0335074_101687653	3300032895	Soil	MLQALFMQRALSLVCALLGGFGVFCVIYSFSTPHIAAQALILLGSALAISYFSAKN
Ga0335074_101759043	3300032895	Soil	MLQAFFVQRALSLVCALLGGFGVFCVIYSFSAPHVAAQALILLGAALAVGYFTAER
Ga0335074_106056222	3300032895	Soil	MLQAFFMQHALSLVCALLGGFGVFCVIYSFAAPHVAAQALILLGAALAVSYFTTE
Ga0335075_112071372	3300032896	Soil	MLQAFFMQRALSLLCALLGGFGVFCVIYSFAAPDIAAQALILLGAALAISYFSAER
Ga0335072_109530792	3300032898	Soil	MQRALSLVCALLGGFGVFCVLYSFSTPHIAAQALILLGSALAIHYFSPEG
Ga0335083_111585371	3300032954	Soil	MLGAFFTQRALSVVCALLGGFGVFCVIYSFSTPDIAAQGLILLGAALAVSYFSSEK
Ga0335076_106858832	3300032955	Soil	MLHAFLMQRALSLIAALLGGCGVFCVVYSFSTPDVALQALILLGAALAVSYFSTRRS
Ga0335073_100568025	3300033134	Soil	MFQASIARRALSLVTACLGGFGVFCVIYSFASQHIAAQALLLLGAALAIGRFTRGD
Ga0335073_110864942	3300033134	Soil	MLQAFFVQRALSLVCALLGGFGVFCVLYSFSAPDVAAQALILLGAALTISYFSPER
Ga0335073_111555142	3300033134	Soil	MLQAFFMQRALSLVCALLGGFGVFCVMYSFAAPDVAAQALILLGAALAISYFSKN
Ga0314861_0385921_448_615	3300033977	Peatland	MLQEFLMQRALSLLSALLGGFGVFCVIYSFSTPHIAAQALILLGAALAVSYFTSRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066832

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences