Metagenome / Metatranscriptome Family F066819

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066819
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	93 residues
Representative Sequence	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLE
Number of Associated Samples	115
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.79 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	88.89 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.778 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.603 % of family members)
Environment Ontology (ENVO)	Unclassified (27.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.175 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 75.61% β-sheet: 0.00% Coil/Unstructured: 24.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF02812	ELFV_dehydrog_N	3.97
PF11303	DUF3105	1.59
PF04513	Baculo_PEP_C	0.79
PF02371	Transposase_20	0.79
PF00583	Acetyltransf_1	0.79
PF07676	PD40	0.79
PF00571	CBS	0.79
PF14378	PAP2_3	0.79
PF02424	ApbE	0.79
PF07987	DUF1775	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	3.97
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.79
COG4549	Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.78 %
Unclassified	root	N/A	22.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.78 %
Unclassified	root	N/A	22.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.78 %
Unclassified	root	N/A	22.22 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.29 %
Unclassified	root	N/A	22.22 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.49 %
Unclassified	root	N/A	22.22 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	54.76 %
Unclassified	root	N/A	22.22 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	53.97 %
Unclassified	root	N/A	22.22 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.79 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	53.97 %
Unclassified	root	N/A	22.22 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.79 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	53.97 %
Unclassified	root	N/A	22.22 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.79 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	53.97 %
Unclassified	root	N/A	22.22 %
unclassified Gemmatimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas	0.79 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	53.97 %
Unclassified	root	N/A	22.22 %
Gemmatimonas sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	0.79 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100320474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	674	Open in IMG/M
3300001536\|A1565W1_10684356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300001664\|P5cmW16_1071288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300004114\|Ga0062593_101427827	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300004157\|Ga0062590_102149685	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300004463\|Ga0063356_100242802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2174	Open in IMG/M
3300005164\|Ga0066815_10101675	Not Available	541	Open in IMG/M
3300005167\|Ga0066672_10981717	Not Available	517	Open in IMG/M
3300005175\|Ga0066673_10248938	Not Available	1029	Open in IMG/M
3300005178\|Ga0066688_10104733	All Organisms → cellular organisms → Bacteria	1733	Open in IMG/M
3300005181\|Ga0066678_10606705	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300005181\|Ga0066678_10752334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300005184\|Ga0066671_10109016	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300005186\|Ga0066676_10890322	Not Available	598	Open in IMG/M
3300005332\|Ga0066388_100147480	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
3300005340\|Ga0070689_101283185	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005354\|Ga0070675_101361813	Not Available	654	Open in IMG/M
3300005435\|Ga0070714_100768205	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300005437\|Ga0070710_10110743	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300005450\|Ga0066682_10429062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	843	Open in IMG/M
3300005526\|Ga0073909_10271762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	760	Open in IMG/M
3300005526\|Ga0073909_10432398	Not Available	626	Open in IMG/M
3300005545\|Ga0070695_101748135	Not Available	521	Open in IMG/M
3300005546\|Ga0070696_100452678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1013	Open in IMG/M
3300005547\|Ga0070693_100282758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1112	Open in IMG/M
3300005553\|Ga0066695_10592040	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300005554\|Ga0066661_10413152	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300005559\|Ga0066700_10163797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1516	Open in IMG/M
3300005561\|Ga0066699_11116687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300005834\|Ga0068851_10213149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1082	Open in IMG/M
3300005937\|Ga0081455_10449467	Not Available	881	Open in IMG/M
3300006031\|Ga0066651_10470104	Not Available	667	Open in IMG/M
3300006034\|Ga0066656_10614203	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300006358\|Ga0068871_100636224	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300006800\|Ga0066660_11525237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
3300006904\|Ga0075424_100990631	Not Available	896	Open in IMG/M
3300007255\|Ga0099791_10504113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300007258\|Ga0099793_10565943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300009038\|Ga0099829_10927042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	723	Open in IMG/M
3300009090\|Ga0099827_10043188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3347	Open in IMG/M
3300009137\|Ga0066709_103056349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	613	Open in IMG/M
3300009162\|Ga0075423_11871438	Not Available	648	Open in IMG/M
3300009176\|Ga0105242_11565272	Not Available	692	Open in IMG/M
3300010147\|Ga0126319_1481785	Not Available	530	Open in IMG/M
3300010320\|Ga0134109_10085007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1087	Open in IMG/M
3300010333\|Ga0134080_10509916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	573	Open in IMG/M
3300010333\|Ga0134080_10663917	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300010335\|Ga0134063_10218832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300010336\|Ga0134071_10460172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300010373\|Ga0134128_11848275	Not Available	665	Open in IMG/M
3300010400\|Ga0134122_10027621	All Organisms → cellular organisms → Bacteria	4279	Open in IMG/M
3300010400\|Ga0134122_10401082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1211	Open in IMG/M
3300010999\|Ga0138505_100010368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1068	Open in IMG/M
3300012096\|Ga0137389_10779052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	821	Open in IMG/M
3300012096\|Ga0137389_10985428	Not Available	723	Open in IMG/M
3300012189\|Ga0137388_10064140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3033	Open in IMG/M
3300012200\|Ga0137382_10553812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	819	Open in IMG/M
3300012206\|Ga0137380_10308153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1417	Open in IMG/M
3300012208\|Ga0137376_10293552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1411	Open in IMG/M
3300012211\|Ga0137377_10242651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1731	Open in IMG/M
3300012354\|Ga0137366_10498086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300012355\|Ga0137369_10007744	All Organisms → cellular organisms → Bacteria	10777	Open in IMG/M
3300012355\|Ga0137369_10009889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9433	Open in IMG/M
3300012360\|Ga0137375_10368900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1266	Open in IMG/M
3300012362\|Ga0137361_10681473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	940	Open in IMG/M
3300012397\|Ga0134056_1353369	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → unclassified Gemmatimonas → Gemmatimonas sp.	1192	Open in IMG/M
3300012532\|Ga0137373_11231967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
3300012922\|Ga0137394_10240815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1546	Open in IMG/M
3300012929\|Ga0137404_10858884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	826	Open in IMG/M
3300012938\|Ga0162651_100063085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	600	Open in IMG/M
3300012944\|Ga0137410_11023574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300012955\|Ga0164298_10047537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2043	Open in IMG/M
3300012971\|Ga0126369_10736846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1065	Open in IMG/M
3300012975\|Ga0134110_10406625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300012975\|Ga0134110_10467193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300012984\|Ga0164309_11592910	Not Available	560	Open in IMG/M
3300012986\|Ga0164304_11594906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300012989\|Ga0164305_10088143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1954	Open in IMG/M
3300013294\|Ga0120150_1082846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300013765\|Ga0120172_1112333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	658	Open in IMG/M
3300014058\|Ga0120149_1101220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	770	Open in IMG/M
3300014150\|Ga0134081_10186155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300015372\|Ga0132256_100327455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1622	Open in IMG/M
3300015373\|Ga0132257_100206720	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2329	Open in IMG/M
3300018027\|Ga0184605_10288017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	745	Open in IMG/M
3300018028\|Ga0184608_10122914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1102	Open in IMG/M
3300018071\|Ga0184618_10173964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	890	Open in IMG/M
3300020006\|Ga0193735_1087486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	884	Open in IMG/M
3300020022\|Ga0193733_1157938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	609	Open in IMG/M
3300021078\|Ga0210381_10012343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2105	Open in IMG/M
3300022756\|Ga0222622_10679724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	747	Open in IMG/M
3300025910\|Ga0207684_10094579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2549	Open in IMG/M
3300026095\|Ga0207676_12414117	Not Available	523	Open in IMG/M
3300026313\|Ga0209761_1253440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	679	Open in IMG/M
3300026326\|Ga0209801_1086786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1367	Open in IMG/M
3300026547\|Ga0209156_10083606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1613	Open in IMG/M
3300026552\|Ga0209577_10439149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	917	Open in IMG/M
3300027561\|Ga0209887_1044962	Not Available	967	Open in IMG/M
3300028717\|Ga0307298_10205445	Not Available	581	Open in IMG/M
3300028719\|Ga0307301_10163822	Not Available	717	Open in IMG/M
3300028771\|Ga0307320_10008471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3662	Open in IMG/M
3300028787\|Ga0307323_10336001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	542	Open in IMG/M
3300028791\|Ga0307290_10250243	Not Available	649	Open in IMG/M
3300028799\|Ga0307284_10009492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2864	Open in IMG/M
3300028799\|Ga0307284_10275667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	672	Open in IMG/M
3300028819\|Ga0307296_10670915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	567	Open in IMG/M
3300028824\|Ga0307310_10271214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	819	Open in IMG/M
3300028828\|Ga0307312_10893115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300028878\|Ga0307278_10363456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300028880\|Ga0307300_10232555	Not Available	606	Open in IMG/M
3300028880\|Ga0307300_10316256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300028884\|Ga0307308_10118403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1264	Open in IMG/M
3300028884\|Ga0307308_10420552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300028885\|Ga0307304_10002267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5377	Open in IMG/M
3300028885\|Ga0307304_10198465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	857	Open in IMG/M
3300030905\|Ga0308200_1085322	Not Available	650	Open in IMG/M
3300030993\|Ga0308190_1140361	Not Available	566	Open in IMG/M
3300031091\|Ga0308201_10366635	Not Available	533	Open in IMG/M
3300031093\|Ga0308197_10344426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300031096\|Ga0308193_1038124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	687	Open in IMG/M
3300031099\|Ga0308181_1161372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	532	Open in IMG/M
3300031114\|Ga0308187_10308066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300031199\|Ga0307495_10178706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	569	Open in IMG/M
3300031903\|Ga0307407_11648803	Not Available	510	Open in IMG/M
3300032002\|Ga0307416_100411140	Not Available	1394	Open in IMG/M
3300032205\|Ga0307472_101192911	Not Available	726	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.68%
Host-Associated	Host-Associated	10.32%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.92%
Plants	Host-Associated → Plants	10.32%
Aquatic	Environmental → Aquatic	4.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.97%
Sediment	Environmental → Aquatic → Sediment	3.17%
Freshwater	Environmental → Aquatic → Freshwater	1.59%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.59%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.40%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.17%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.79%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.59%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	24.60%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.14%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.38%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.59%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.59%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001664	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - 5cm_reassembled	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012397	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013765	Permafrost microbial communities from Nunavut, Canada - A30_80cm_6M	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1003204742	3300000956	Soil	MADVVLILLLAAGLAAALVWLARVLRELRVDWSSQLAERTAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLE
A1565W1_106843561	3300001536	Permafrost	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLE
P5cmW16_10712882	3300001664	Permafrost	VIDVILILLLGIGLAAALVWLARALGDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLG
Ga0062593_1014278272	3300004114	Soil	MVDVVLILLLGALLATLLVAGGRALLRELSSLRADSSAQLAERNADVDRRLQGLVETMDRRLGELDTKVDRRLESTSQTTSKIHERLGKVDEATTQMLERAKDLARLEQAL
Ga0062590_1021496851	3300004157	Soil	MVDVILILLLGAGLAAGAVWLARVLRDLRTDWSAQLSERNAEVDRHLLGVTETMDRRLGELDTKVDRRLESASQ
Ga0063356_1002428021	3300004463	Arabidopsis Thaliana Rhizosphere	MANIVLILLLGAGFAAGMAWLARVLRELRSDWSSQLAERTAEVDRHLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQAL
Ga0066815_101016751	3300005164	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPK
Ga0066672_109817171	3300005167	Soil	MTDVLLILLVGALLTGGLVWLARVLRELRADWSSQLSERNAEVDRHLIGVTETMDRRLAELDTKVDRRLESASQTTNKIHERLGKVD
Ga0066673_102489381	3300005175	Soil	MLNVVLILLLGAGLAAGLVWLARLFRDLRSDWSSQLAERTAEVDRHLLGVTETMDRRLAELDTKVDRRLESATETTNKIHDRLGKVDEATTQMLERAKDLARLEQALRPPKAR
Ga0066688_101047334	3300005178	Soil	VTGVILILLLGVGLAAALGWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLE
Ga0066678_106067051	3300005181	Soil	VILILLLGVGLAAALAWLARTLRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEAT
Ga0066678_107523341	3300005181	Soil	MAGAVLIVVLVPAVAGAVVWLAARALRELRADWSAQLAERTAAVDRRLEGVTETMDRRLGELDTKVDRRLE
Ga0066671_101090161	3300005184	Soil	MANVILILLLAAGLAAAVVWLARVLRELRGDWSAQLAERTGDVDRRLLGVTETMDRRLAELDTKVDRRLESATQTTNKIHERLGKVDEATTQM
Ga0066676_108903222	3300005186	Soil	MAVVILILLLAAGLAAALVWLARLLRELRADWSSQLSERNAEVDRHLLGVTETMDRRLAELDTKVDRRLESATQTTNKIHERLGKVD
Ga0066388_1001474801	3300005332	Tropical Forest Soil	MVGAVLILLLGAGLAAGAVWLARVLRELRSDWSEQLSDRNAEVDRRLLGVTETMDRRLAELDTKVDRRLESATQTTNQIHERLGKVDEATTQMLERAKDLARLEQALRPPKA
Ga0070689_1012831852	3300005340	Switchgrass Rhizosphere	MVDVILILLLGAAVAAGLAWIVRTMQRLGDGWSRDLADRNAEVDRRLLGIDERMDRRLADLDTKVDRRLESATQTTNKIHERLGKVDEATTQMLERAKDLARLEQAL
Ga0070675_1013618131	3300005354	Miscanthus Rhizosphere	MVDVILILLLGAAVAAGLAWIVRTMQRLGDGWSRDLADRNAEVDRRLLGIDERMDRRLADLDTKVDRRLESATQTTNKIHERLGKVDEATTQM
Ga0070714_1007682051	3300005435	Agricultural Soil	MAAVLLILLLGAGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLE
Ga0070710_101107431	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MAAVLLILLLGAGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLER
Ga0066682_104290621	3300005450	Soil	VILIILLGVGLAAALAWLARALRDLRADWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGK
Ga0073909_102717622	3300005526	Surface Soil	MAAVLLILLLGVGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNK
Ga0073909_104323981	3300005526	Surface Soil	MVDVILILLFGAAVAAGLVWIVRTMQRLGDGWSRDLADRSAEVDRRLLGIDERMDRRLADLDTKVDRRLESASQTTNKIHERLGKVDE
Ga0070695_1017481352	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MANVVLILLVGAGLAAGLTWLARALRDLRADWSSQLSERNAEVDRHLLGVTETMDRRLAELDTKVDRRLENATQTTNKIHERLGKV
Ga0070696_1004526783	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MANVVLILLVGAGLAAGLTWLARALRDLRADWSSQLSERNAEVDRHLLGVTETMDRRLAELDTKVDRRLENATQTTNKIHERLGKVDEATTQMLER
Ga0070693_1002827582	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MAAVLLILLLGAGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPKA
Ga0066695_105920401	3300005553	Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSDRNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRAKDLARLEQALRPPKA
Ga0066661_104131521	3300005554	Soil	MTDAVLILVLAAGLAVALGWLARLLRELRADWSSQLAERTAEVDRRLEGVTETMDRRLGELDTKVDRRLESASQTT
Ga0066700_101637974	3300005559	Soil	MVGVIVILVLLPALAGLAWYLRTEMARSRTESTTALSERNAEVDRRLQGVIETMDRRLAQLDTKVDRRLESASQTTIKIHERLGKVDEATTQMLE
Ga0066699_111166871	3300005561	Soil	MANVVLILLVAAALAGGLVWLARVMRNLGAGWSVELAERNAEVDRHLVAVTETMDRRLGELDTKVDRRLESATQTTNKIHERLGKVDEATTQM
Ga0068851_102131491	3300005834	Corn Rhizosphere	MAAVLLILLLGAGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQT
Ga0081455_104494671	3300005937	Tabebuia Heterophylla Rhizosphere	MANVVLILLLAAAVGGAVVWLARVLKDLRGDWSTQLAERNAEVDRRLLGMGEAMDRRLADLDTKVDRRLENA
Ga0066651_104701041	3300006031	Soil	MLNVVLILLLGAGLAAALVWLARLFRDLRSDLSSQLAERTAEVDRHLLGVTETMDRRLAELDTKVDRRLESATETTNKIHDRLGKVDEATTQMLERAKD
Ga0066656_106142031	3300006034	Soil	VTGVILILLLGVGLAAALAWLAHALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRAKDLARLEQ
Ga0068871_1006362242	3300006358	Miscanthus Rhizosphere	MAAVLLILLLGAGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRP
Ga0066660_115252372	3300006800	Soil	MANVVLILLVAAALAGGLVWLARVMRNLGAGWSAELAERNAEVDRHLVAVTETMDRRLGELDTKVDRRLENATQTTNKIHESL
Ga0075424_1009906311	3300006904	Populus Rhizosphere	MAAVILILFLAAGLAVALVWLARALRDLRVDWSSQLSDRNAEVDRRLIGVTETMDRRLAELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPKAR
Ga0099791_105041132	3300007255	Vadose Zone Soil	VTGVLLILLLGVGLAAALAWLARVLRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQ
Ga0099793_105659432	3300007258	Vadose Zone Soil	VTGVILILLLGVGLAAALGWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQM
Ga0099829_109270422	3300009038	Vadose Zone Soil	VTDVILILLLGVGLAAALAWLARALRDLRKDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKI
Ga0099827_100431885	3300009090	Vadose Zone Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRAKDLARLEQALRPP
Ga0066709_1030563491	3300009137	Grasslands Soil	MAGAVLIVVLVPAVAGAVVWLAARALRELRADWSAQLAERTAVVDRRLEGVTETMDRRLGELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKD
Ga0075423_118714381	3300009162	Populus Rhizosphere	MVDVILILLLGAGLAAGAVWLARVFRDLRTDWSAQLSERNAEVDRHLLGVTETMDRRLAELDTKVDRRLESATQTTNKIHERLGKVDEATTQMLERAK
Ga0105242_115652721	3300009176	Miscanthus Rhizosphere	MVDVILILLLGAAVAAGLAWIVRTMQRLGDGWSRDLADRNAEVDRRLLGIDERMDRRLADLDTKVDRRLESATQTTNKIHERLGKVDE
Ga0126319_14817851	3300010147	Soil	MAAVLLILVLGLGLAAALVWLARTLRELRADWSTQLSERNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHE
Ga0134109_100850073	3300010320	Grasslands Soil	VTGVILILLLGVGLAAALGWLARALRDLRADWSSQLSERNAEVDRRLVGVTETMDRRLGELDIKVDRRLESASQTTN
Ga0134080_105099162	3300010333	Grasslands Soil	MTDVVLILLVGAALVGGLVWLARVPRELSLACSSQLSERNAEVDRHLLGVTETMDRRLSELDTKVDRRLESATLTTNKIHERLGKVDEATTQML
Ga0134080_106639171	3300010333	Grasslands Soil	MAGAVLIVVLVPAVAGAVVWLAARALRELRADWSAQLAERTAVVDRRLEGVTETMDRRLGELDPQVDRRLENASQTTNRIHEKLGKVDEATTQMLERAKDLARLEQ
Ga0134063_102188322	3300010335	Grasslands Soil	MTDVVLILLVGAALVGGLVWLARVLRELRADWSSQLSERNAEVDRHLLGVTETMDRRLAELDTKVDRRLESASQTTNKIHERLGKVDEATTQML
Ga0134071_104601721	3300010336	Grasslands Soil	MTDVVLILLVGAALVGGLVWLARVLGELRADWSSQLSERNAEVDRHLLGVTETMDRRLAQLDTKVDRRLESASQTTNK
Ga0134128_118482751	3300010373	Terrestrial Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVNRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIH
Ga0134122_100276217	3300010400	Terrestrial Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKV
Ga0134122_104010823	3300010400	Terrestrial Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLG
Ga0138505_1000103683	3300010999	Soil	MANVILILLLGAGLAAGLVWLARLLRDLRTDWSSQLSQRTAEVDRRLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLAR
Ga0137389_107790522	3300012096	Vadose Zone Soil	VTDVILILLLGVGLAAALAWLASALRDMRTDWSSQLSERNAEVDRRLVGFTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRAKDLARLEQALRPP
Ga0137389_109854281	3300012096	Vadose Zone Soil	MTGAALILVLVPAVAGGVLWLAARALRQLRGDWTAQLVERTAAVDRRLEGVTETLDRRLAELDTKVDRRLENASQTTNKIHERLRK
Ga0137388_100641401	3300012189	Vadose Zone Soil	VIDVTLILLLGIGLAAALVWLARALGDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQML
Ga0137382_105538121	3300012200	Vadose Zone Soil	MADVILILLLAAGLAAALVWLARVLRELRVDWSSQLAERTAEVDRRLVGVTETMDRRLGELDTKVDRRLESATQTTNKIHERLGKVDEATTQMLE
Ga0137380_103081533	3300012206	Vadose Zone Soil	VTGVILILLLGVGLAAALAWLARALRDLRADWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDE
Ga0137376_102935521	3300012208	Vadose Zone Soil	MANVILILLLGAGLAAGLVWLARLLRELRSDWSSQLSERTAEVDRRLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKD
Ga0137377_102426511	3300012211	Vadose Zone Soil	VTGVILILLLGVGLAAALAWLARALRDLRADWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPP
Ga0137366_104980862	3300012354	Vadose Zone Soil	VTDVILILLLAAGLAAALAWLARALRDLRTDWSAQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDE
Ga0137369_100077441	3300012355	Vadose Zone Soil	MLTVAAIAILALALAGFAVWLARALQSLRAESSAGLDGRSAEVDRRLQAVTETMDRRLGELDQKVDRRLEQASQQTSAIHERLGKVGEATAQLAEQAKGLG
Ga0137369_1000988918	3300012355	Vadose Zone Soil	MAAGILLLLVALAALAAWLARALKSLRVDSASQFEGRNAEVERRLQGVIETMDRRLGELDTKVDRRLENASKQTNAIHKQL
Ga0137375_103689001	3300012360	Vadose Zone Soil	MANAILILLLGAGLAAGLVWLARLLRDLRADWSSQLAERTAEVDRHLLGVTETMDRRLSELDTKVDRRLESASQTTNKIHERLGKVDEATAQMLERAKDLARLEQALRPPKAR
Ga0137361_106814732	3300012362	Vadose Zone Soil	VTDVILILLLGVGLAAALAWLAHALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDR
Ga0134056_13533693	3300012397	Grasslands Soil	VLRRRLSSLLGLGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLER
Ga0137373_112319671	3300012532	Vadose Zone Soil	VTDVILILLLGVGLAAALAWLARALRDLRADWTSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDE
Ga0137394_102408151	3300012922	Vadose Zone Soil	VTGVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPKA
Ga0137404_108588842	3300012929	Vadose Zone Soil	VTGVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARL
Ga0162651_1000630852	3300012938	Soil	VTDVILILLLGLGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRAKDLARLEQ
Ga0137410_110235742	3300012944	Vadose Zone Soil	MAGALLILVLVPAAAGAVVWLAARALRDLRADWSAQLAERTAAVDRRLEGVTETMDRRLGELDTKVDRRLENASQTTNK
Ga0164298_100475371	3300012955	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPKARG
Ga0126369_107368463	3300012971	Tropical Forest Soil	MVDVILILLLAAAVAVGLVWIVRTMQRLGDGWSRDLAERNAEVDRRLLGIDERMDRRLAELDTKVDRRLESATQTTNKIHERLGKVDEA
Ga0134110_104066252	3300012975	Grasslands Soil	MTDVLLILLVGAALVGGLVWLARLLGELRTDWSSQLSARNAEVDRHLLGVTETMDRRLAELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLE
Ga0134110_104671932	3300012975	Grasslands Soil	MADVVLILLLAAGLAAGLVWLARLLRDLRSDWSAQLAERTAEVDRRLLGVTETMDRRLGELDTKVDRRLESATQTTNKI
Ga0164309_115929102	3300012984	Soil	MVDVVLILLLGAAVAAGLVWIVRTMQRLGDGWSRDLAERSAEVDRRLADLDTKVDRRLESATQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPKARG
Ga0164304_115949061	3300012986	Soil	VTGVILILLLGVGLAAALAWLARALRDLRTDWSTQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASHTANKIHERLG
Ga0164305_100881435	3300012989	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGK
Ga0120150_10828462	3300013294	Permafrost	VTGVILILLLGVGLAAALAWLAHALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRA*
Ga0120172_11123332	3300013765	Permafrost	VTGVILILLLGVGLAAALAWLARALRDLRADWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGK
Ga0120149_11012201	3300014058	Permafrost	MLIGLVIVVLLAVAALAAWVGRLLRSELGSLKTDSGTQLAERNREVDRRLEAIVETMDRRLGELDTKVDRRLESAGNATKEIHERLGEVGKATNQMLERAKDLARLE
Ga0134081_101861551	3300014150	Grasslands Soil	MTDVLLILLVGAALVGGLVWLARLLGQLRTDWSSQLSERNAEVDRHLLGVTETMDRRLAELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPKA
Ga0132256_1003274554	3300015372	Arabidopsis Rhizosphere	MVDVVLILLLGAALAAGLAWVVRTMRGVGDGWSRELAERSAEVDRRLLGIDERMDRRLADLDTKVDRRLESATQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRP
Ga0132257_1002067201	3300015373	Arabidopsis Rhizosphere	MVDVVLILLLGAALAAGLAWVVRTMRGVGDGWSRELAERSAEVDRRLLGIDERMDRRLADLDTKVDRRLESASETTAKIHDRLGKVDEATTQM
Ga0184605_102880172	3300018027	Groundwater Sediment	VTDVILILLLGVGLSAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLER
Ga0184608_101229143	3300018028	Groundwater Sediment	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSQRNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANK
Ga0184618_101739641	3300018071	Groundwater Sediment	MANVILILLLGAGLAAGLVWLARLLRDLRADWSSQLSERTAEVDRRLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLE
Ga0193735_10874862	3300020006	Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKI
Ga0193733_11579381	3300020022	Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQML
Ga0210381_100123431	3300021078	Groundwater Sediment	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLAR
Ga0222622_106797242	3300022756	Groundwater Sediment	VTDVILILVLGLGLAAALAWLGRTLRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNRIHERLGKVDEATTQMLER
Ga0207684_100945791	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATT
Ga0207676_124141172	3300026095	Switchgrass Rhizosphere	MVDVILILLLGAAVAAGLAWIVRTMQRLGDGWSRDLADRNAEVDRRLLGIDERMDRRLADLDTKVDRRLESATQTTNKIHERLGKVDEATTQML
Ga0209761_12534401	3300026313	Grasslands Soil	VTGVILILLLGVGLAAALGWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQAL
Ga0209801_10867863	3300026326	Soil	VTGVILILLLGVGLAAALGWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRPPK
Ga0209156_100836061	3300026547	Soil	MTDVLLILLVGAALVGGLVWLARLLGELRTDWSSQLSERNAEVDRHLLGVTETMDRRLAQLDTKVDRRLESASQTTN
Ga0209577_104391491	3300026552	Soil	MANVILILLLAAGLAAAVVWLARVLRELRGDWSAQLAERTGDVDRRLLGVTETMDRRLAELDTKVDRRLESATQTTNKIHERL
Ga0209887_10449621	3300027561	Groundwater Sand	MVEVILILLLGAAIAAVLAFVGRAMLRELGSFRADSSAQLAERNAEVDRRLQGLVETMDRRLAELDSKVDRRLESASQTTSKIHERLGK
Ga0307298_102054452	3300028717	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLE
Ga0307301_101638222	3300028719	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNK
Ga0307320_100084711	3300028771	Soil	VTILATILVLLIGGSALAVWLSRVLDRLLSHRNAEVDGRLEAITETMDRRLGELDTKVDRRLESATQTTNKIHERLGKVDEATTQMLERAK
Ga0307323_103360012	3300028787	Soil	VTDVILILLLGLGLAAALTWLARALRDLRADWSSQLSQRNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHER
Ga0307290_102502431	3300028791	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEA
Ga0307284_100094921	3300028799	Soil	VTDVILILVLGLGLAAALAWLGRTLRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNRIH
Ga0307284_102756672	3300028799	Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAK
Ga0307296_106709152	3300028819	Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWTMQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLDRAKDLARLEQALR
Ga0307310_102712142	3300028824	Soil	VTDVILILVLGLGLAAALAWLGRTLRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIH
Ga0307312_108931152	3300028828	Soil	MANVILILLLGAGLAAGLAWLARLLRDLRADWSVQLAERTAEVDRHLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEA
Ga0307278_103634561	3300028878	Soil	MANVILILLLGAGLAAGLVWLARVLRELRADWSSQLSERTAEVDRRLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERA
Ga0307300_102325551	3300028880	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVD
Ga0307300_103162562	3300028880	Soil	MANVILILLLGAGLAAGLVWLARLLRDLRADWSSQLSERTAEVDRRLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLARLEQA
Ga0307308_101184031	3300028884	Soil	MVNVILILLLGAAIAAVLAYAGRAVTRELGSLRTDSSTQLTERNAEVDRRLQGLIETMDRRLGELDTKVDRRLESASQTTSKIHERLGKVDEA
Ga0307308_104205521	3300028884	Soil	VTDVILILLLGVGLAAALGWLARALRDLRTDWTAQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASHTANKIHERLGKVDEATTQMLDRAKDLARLEQAL
Ga0307304_100022671	3300028885	Soil	MAAVLLILLLGVGLPAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEA
Ga0307304_101984652	3300028885	Soil	VTDVILILLLGVGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVD
Ga0308200_10853222	3300030905	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQALR
Ga0308190_11403612	3300030993	Soil	MAAVLLILLLGVGLAAALVWLGRTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATT
Ga0308201_103666352	3300031091	Soil	MAAVLLILLLGVGLAAALVWLARTLRELRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIH
Ga0308197_103444261	3300031093	Soil	MANVILILLLGAGLAAGLVWLARLLRDLRADWSSQLSERTAEVDRRLLGVTETMDRRLGELDTKVDRRLESASQTTNKIHERLGKVDEATTQMLERAKDLA
Ga0308193_10381241	3300031096	Soil	VTDVILILLLGLGLAAALTWLARALRDLRADWSSQLSQRNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEATTQMLD
Ga0308181_11613722	3300031099	Soil	MLLLGLGLAAALAWLARALRDLRTDWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRMENASQTANKIH
Ga0308187_103080661	3300031114	Soil	VTDVILILLLGLGLAAALTWLARALRDLRADWSSQLSQRNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKIHERLGKVDEAT
Ga0307495_101787061	3300031199	Soil	VTDVILILLLGLGLAAALAWLARALGDLRADWSSQLSERNAEVDRRLVGVTETMDRRLGELDTKVDRRLENASQTANKI
Ga0307407_116488031	3300031903	Rhizosphere	MVYAVPILLLAALAVGVVVLVRLLRSELSALRAESGMQLAERNSAIDRRLESLGATMDRRLGTLDERVDRRLEDATQTTNKIHERLGKVDEATTQMLERAKDLARLEQ
Ga0307416_1004111402	3300032002	Rhizosphere	MVYAVPILLLAALAVGVVVLVRLLRSELSALRAESGMQLAERNSAIDRRLESLGATMDRRLGTLDERVDRRLEDATQTTNKIHERLGKVDEATTQMLERAKDLARLEQALRP
Ga0307472_1011929111	3300032205	Hardwood Forest Soil	MAAVLLILLLGVGLAAALVWLARTLRDLRADWSTQLSDRNAEVDRHLIGVTETMDRRLSELDTKVDRRLENASQTTNKIHERLGKVDEATTQMLERAKDLARLEQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066819

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences