Metagenome / Metatranscriptome Family F066816

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F066816
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	73 residues
Representative Sequence	GERPYWWQDDDLAVQARYASDVLESALDALAQLPGADEGELRAGLRDLRALVDRPGAGLGWVVHKSTAVH
Number of Associated Samples	108
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.41 %
% of genes from short scaffolds (< 2000 bps)	91.27 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (66.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.873 % of family members)
Environment Ontology (ENVO)	Unclassified (27.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.619 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.78% β-sheet: 12.24% Coil/Unstructured: 48.98%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.82.1.1: ALDH-like	d1uxta_	1uxt	0.70209
c.82.1.0: automated matches	d4dnga_	4dng	0.69212
c.82.1.0: automated matches	d4i9ba_	4i9b	0.68428
c.82.1.0: automated matches	d4nmka_	4nmk	0.68218
c.82.1.1: ALDH-like	d2bjka_	2bjk	0.68156

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF16655	PhoD_N	5.56
PF01872	RibD_C	4.76
PF11799	IMS_C	3.97
PF09579	Spore_YtfJ	2.38
PF00211	Guanylate_cyc	2.38
PF03176	MMPL	2.38
PF05988	DUF899	2.38
PF06197	DUF998	1.59
PF08241	Methyltransf_11	1.59
PF13450	NAD_binding_8	1.59
PF04828	GFA	1.59
PF00296	Bac_luciferase	1.59
PF02368	Big_2	0.79
PF03734	YkuD	0.79
PF13714	PEP_mutase	0.79
PF13289	SIR2_2	0.79
PF14535	AMP-binding_C_2	0.79
PF03741	TerC	0.79
PF03706	LPG_synthase_TM	0.79
PF03575	Peptidase_S51	0.79
PF00990	GGDEF	0.79
PF02518	HATPase_c	0.79
PF12704	MacB_PCD	0.79
PF01391	Collagen	0.79
PF13669	Glyoxalase_4	0.79
PF01047	MarR	0.79
PF00089	Trypsin	0.79
PF14333	DUF4389	0.79
PF00266	Aminotran_5	0.79
PF13518	HTH_28	0.79
PF00392	GntR	0.79
PF07992	Pyr_redox_2	0.79
PF00486	Trans_reg_C	0.79
PF00440	TetR_N	0.79
PF05977	MFS_3	0.79
PF09423	PhoD	0.79
PF14062	DUF4253	0.79
PF01569	PAP2	0.79
PF00583	Acetyltransf_1	0.79
PF12802	MarR_2	0.79
PF00708	Acylphosphatase	0.79
PF00196	GerE	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	4.76
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	4.76
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	2.38
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	2.38
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	2.38
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	2.38
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.59
COG3371	Uncharacterized membrane protein	Function unknown [S]	1.59
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.59
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG0861	Tellurite resistance membrane protein TerC	Inorganic ion transport and metabolism [P]	0.79
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.79
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.67 %
Unclassified	root	N/A	33.33 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.06 %
Unclassified	root	N/A	33.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.59 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.92 %
Unclassified	root	N/A	33.33 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.59 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.22 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.59 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.59 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.79 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.79 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.79 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.32 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.38 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.59 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.79 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.79 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.79 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.32 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.38 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.59 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.79 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.79 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.79 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.79 %
Nitratireductor	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor	0.79 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.32 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.38 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.59 %
Acidithrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix	0.79 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.79 %
unclassified Nitratireductor	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor → unclassified Nitratireductor	0.79 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.79 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.79 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.32 %
Streptomyces chromofuscus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	2.38 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples	1.59 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	0.79 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.79 %
Nitratireductor sp. XY-223	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor → unclassified Nitratireductor → Nitratireductor sp. XY-223	0.79 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.79 %
Micromonospora inositola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inositola	0.79 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.33 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.32 %
Streptomyces chromofuscus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	2.38 %
uncultured Nocardioides sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	1.59 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.79 %
Acidithrix ferrooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	0.79 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.79 %
Nitratireductor sp. XY-223	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor → unclassified Nitratireductor → Nitratireductor sp. XY-223	0.79 %
Micromonospora inositola	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inositola	0.79 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003373\|JGI25407J50210_10030670	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1392	Open in IMG/M
3300004114\|Ga0062593_102580060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300004157\|Ga0062590_100191739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1464	Open in IMG/M
3300004643\|Ga0062591_100184500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1509	Open in IMG/M
3300005179\|Ga0066684_10130821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1573	Open in IMG/M
3300005179\|Ga0066684_10964573	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005328\|Ga0070676_11022761	All Organisms → cellular organisms → Bacteria → Terrabacteria group	621	Open in IMG/M
3300005332\|Ga0066388_103321145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300005343\|Ga0070687_100674218	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300005440\|Ga0070705_100382594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1036	Open in IMG/M
3300005441\|Ga0070700_100964931	Not Available	698	Open in IMG/M
3300005455\|Ga0070663_102067600	All Organisms → cellular organisms → Bacteria → Terrabacteria group	513	Open in IMG/M
3300005471\|Ga0070698_101076555	Not Available	752	Open in IMG/M
3300005558\|Ga0066698_10500444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	826	Open in IMG/M
3300005560\|Ga0066670_10401889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	840	Open in IMG/M
3300005569\|Ga0066705_10932506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300005587\|Ga0066654_10153990	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1169	Open in IMG/M
3300005614\|Ga0068856_102272042	Not Available	551	Open in IMG/M
3300005713\|Ga0066905_100349251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1181	Open in IMG/M
3300005713\|Ga0066905_101935442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidithrix → Acidithrix ferrooxidans	546	Open in IMG/M
3300005937\|Ga0081455_10413795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	932	Open in IMG/M
3300006028\|Ga0070717_10253620	Not Available	1555	Open in IMG/M
3300006028\|Ga0070717_12132394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	504	Open in IMG/M
3300006358\|Ga0068871_101219435	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300006755\|Ga0079222_12384361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300006844\|Ga0075428_100016981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8040	Open in IMG/M
3300006844\|Ga0075428_100050348	All Organisms → cellular organisms → Bacteria	4569	Open in IMG/M
3300006847\|Ga0075431_101768490	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300006852\|Ga0075433_11847738	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006853\|Ga0075420_101245885	Not Available	639	Open in IMG/M
3300006854\|Ga0075425_102829466	Not Available	533	Open in IMG/M
3300006880\|Ga0075429_101959102	Not Available	507	Open in IMG/M
3300006881\|Ga0068865_101463943	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300006894\|Ga0079215_11144945	Not Available	587	Open in IMG/M
3300009012\|Ga0066710_101347595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300009094\|Ga0111539_10534069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1366	Open in IMG/M
3300009098\|Ga0105245_10049735	All Organisms → cellular organisms → Bacteria	3755	Open in IMG/M
3300009100\|Ga0075418_12590213	Not Available	554	Open in IMG/M
3300009147\|Ga0114129_10277207	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300009147\|Ga0114129_13212160	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300009156\|Ga0111538_10312247	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300009162\|Ga0075423_10441832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1366	Open in IMG/M
3300009162\|Ga0075423_12277518	Not Available	589	Open in IMG/M
3300009789\|Ga0126307_10939081	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300009789\|Ga0126307_11198978	Not Available	614	Open in IMG/M
3300009840\|Ga0126313_10230708	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300009840\|Ga0126313_10387185	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1107	Open in IMG/M
3300010040\|Ga0126308_10937010	Not Available	605	Open in IMG/M
3300010041\|Ga0126312_10563648	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300010042\|Ga0126314_10438041	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300010042\|Ga0126314_10735916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	724	Open in IMG/M
3300010044\|Ga0126310_10054307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2241	Open in IMG/M
3300010044\|Ga0126310_10666767	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300010044\|Ga0126310_11841093	Not Available	505	Open in IMG/M
3300010045\|Ga0126311_10154508	Not Available	1637	Open in IMG/M
3300010045\|Ga0126311_10683756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	819	Open in IMG/M
3300010045\|Ga0126311_11082794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M
3300010142\|Ga0127483_1049715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	619	Open in IMG/M
3300010166\|Ga0126306_11291052	All Organisms → cellular organisms → Bacteria → Terrabacteria group	602	Open in IMG/M
3300010333\|Ga0134080_10425099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	619	Open in IMG/M
3300010375\|Ga0105239_13453297	Not Available	514	Open in IMG/M
3300010375\|Ga0105239_13496473	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300010403\|Ga0134123_11891235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300012045\|Ga0136623_10207675	Not Available	839	Open in IMG/M
3300012198\|Ga0137364_10166398	Not Available	1603	Open in IMG/M
3300012212\|Ga0150985_118696888	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300012356\|Ga0137371_11246640	Not Available	553	Open in IMG/M
3300012357\|Ga0137384_10997811	Not Available	673	Open in IMG/M
3300012360\|Ga0137375_10389061	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1223	Open in IMG/M
3300012398\|Ga0134051_1075955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	648	Open in IMG/M
3300012403\|Ga0134049_1205912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300012897\|Ga0157285_10216002	Not Available	611	Open in IMG/M
3300012915\|Ga0157302_10036744	Not Available	1323	Open in IMG/M
3300012977\|Ga0134087_10283775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	770	Open in IMG/M
3300012987\|Ga0164307_11528863	Not Available	564	Open in IMG/M
3300013105\|Ga0157369_11295319	Not Available	743	Open in IMG/M
3300013296\|Ga0157374_12552422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300014487\|Ga0182000_10407468	Not Available	605	Open in IMG/M
3300015357\|Ga0134072_10332973	Not Available	577	Open in IMG/M
3300015371\|Ga0132258_12049266	All Organisms → cellular organisms → Bacteria	1439	Open in IMG/M
3300015372\|Ga0132256_101774419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	725	Open in IMG/M
3300018052\|Ga0184638_1121774	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300018056\|Ga0184623_10244420	Not Available	820	Open in IMG/M
3300018081\|Ga0184625_10649959	Not Available	511	Open in IMG/M
3300018422\|Ga0190265_11863126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	709	Open in IMG/M
3300018431\|Ga0066655_10447793	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300018468\|Ga0066662_12056147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inositola	598	Open in IMG/M
3300018468\|Ga0066662_12143163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300018469\|Ga0190270_12845447	Not Available	546	Open in IMG/M
3300018481\|Ga0190271_10093188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2748	Open in IMG/M
3300018481\|Ga0190271_12669155	Not Available	599	Open in IMG/M
3300019458\|Ga0187892_10352922	Not Available	715	Open in IMG/M
3300022756\|Ga0222622_10060711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2180	Open in IMG/M
3300025324\|Ga0209640_10028360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4882	Open in IMG/M
3300025918\|Ga0207662_11062687	Not Available	575	Open in IMG/M
3300025935\|Ga0207709_10248494	Not Available	1298	Open in IMG/M
3300025938\|Ga0207704_11600024	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300025949\|Ga0207667_11245829	Not Available	722	Open in IMG/M
3300026023\|Ga0207677_11435877	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300026078\|Ga0207702_10343982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1425	Open in IMG/M
3300026547\|Ga0209156_10348158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chromofuscus	643	Open in IMG/M
3300027479\|Ga0207636_1000446	Not Available	1070	Open in IMG/M
3300028589\|Ga0247818_10360831	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300028712\|Ga0307285_10137948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300028713\|Ga0307303_10104460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	652	Open in IMG/M
3300028714\|Ga0307309_10127173	Not Available	629	Open in IMG/M
3300028717\|Ga0307298_10256395	Not Available	520	Open in IMG/M
3300028744\|Ga0307318_10352695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300028778\|Ga0307288_10000138	All Organisms → cellular organisms → Bacteria	25915	Open in IMG/M
3300028784\|Ga0307282_10660413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	507	Open in IMG/M
3300028787\|Ga0307323_10358454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300028803\|Ga0307281_10116183	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300028828\|Ga0307312_10019169	All Organisms → cellular organisms → Bacteria	3880	Open in IMG/M
3300028884\|Ga0307308_10554213	Not Available	551	Open in IMG/M
3300030511\|Ga0268241_10181595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300030993\|Ga0308190_1175995	Not Available	525	Open in IMG/M
3300031099\|Ga0308181_1174809	Not Available	516	Open in IMG/M
3300031229\|Ga0299913_11362041	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	665	Open in IMG/M
3300031229\|Ga0299913_11387497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Nitratireductor → unclassified Nitratireductor → Nitratireductor sp. XY-223	658	Open in IMG/M
3300031911\|Ga0307412_11144521	Not Available	694	Open in IMG/M
3300031911\|Ga0307412_12011758	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031995\|Ga0307409_100032832	Not Available	3770	Open in IMG/M
3300032126\|Ga0307415_101455083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	654	Open in IMG/M
3300033551\|Ga0247830_11544314	Not Available	531	Open in IMG/M
3300034149\|Ga0364929_0241483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300034151\|Ga0364935_0161901	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.84%
Host-Associated	Host-Associated	30.16%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.87%
Plants	Host-Associated → Plants	30.16%
Aquatic	Environmental → Aquatic	3.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.14%
Sediment	Environmental → Aquatic → Sediment	3.17%
Floodplain	Environmental → Terrestrial → Floodplain	1.59%
Roots	Host-Associated → Plants → Roots	1.59%
Freshwater	Environmental → Aquatic → Freshwater	0.79%
Cave	Environmental → Terrestrial → Cave	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.05%
Loam	Environmental → Terrestrial → Soil → Loam	8.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.17%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.38%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.59%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.59%
Ice	Environmental → Aquatic → Freshwater → Ice	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.56%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.59%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.59%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.59%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	11.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.17%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.17%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.38%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.59%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.59%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.59%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.79%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012403	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A4w-11 (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25407J50210_100306702	3300003373	Tabebuia Heterophylla Rhizosphere	ADAGFRQIDEGARPQWWEGGDLAMQANYAADVMESAVDALVQAPGATDGEIRAGLADLRRLADIPGAGLGWVLHKSTASR*
Ga0062593_1025800602	3300004114	Soil	YWWQGEDLAGQARYAAEVLESALDALLQLPGNDEAELRAGLTDLRALPERPGAGLGWVVHKSTAVR*
Ga0062590_1001917392	3300004157	Soil	FREVDEGERRYWWQGEDLAGQARYAAEVLESALDALLQLPGNDEAELRAGLTDLRALPERPGAGLGWVVHKSTAVR*
Ga0062591_1001845004	3300004643	Soil	EDLANQANYAADVMESALPALAELPGVREDELHAGLADLRGLASAPGAQLGWVVHKSTGRR*
Ga0066684_101308214	3300005179	Soil	LREAGFRDVDEGERPYSFEGDDLAHQASYAADVMESALPALVQRLGADDDVLRAGLAGLRNLPSVPDARLGWVVHKSTAAH*
Ga0066684_109645732	3300005179	Soil	REAGFSDVDEGQRPYAFRNGDLAHQASYAAEVMESALPALVQLLGADEHELRAGLANLRDLPNVPDARLGWVVHKSTGKR*
Ga0070676_110227612	3300005328	Miscanthus Rhizosphere	EELANQAFYAADVIESALDALARLPGADELELSAGLEDLRGLATQPDAGLGWVVHKSTAVR*
Ga0066388_1033211452	3300005332	Tropical Forest Soil	IDEGERTFWWQGQDLAGQARYAADVLESALDALLRLPGSVEEELRAGLEDLRRLETQRGAGLGWVMHKSTARR*
Ga0070687_1006742183	3300005343	Switchgrass Rhizosphere	DLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPGAPGAGLGWVVHKSTGSKPSGG*
Ga0070705_1003825941	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	GKRPFWWRDDDLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPGTPGAGLGWVVHKSTGSKPSGG*
Ga0070700_1009649312	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	RPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0070663_1020676002	3300005455	Corn Rhizosphere	GQATYAADVLESALDALVALPGADEDQLHVGLRDLRALPGRSRASLGWVVHKSTGRKPVSERQAPQ*
Ga0070698_1010765551	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DEGERPFLFRDEDLANQARYAADVMESALPALTELPGSSEGELQTGLADLRALANAPDAQLGWVVHKSTAKR*
Ga0066698_105004442	3300005558	Soil	WWQDQDLLGQANYAADVMESALPALAQLPGADQEELRAGLTDLRDLASQPDAGLGWVVHKSTAVR*
Ga0066670_104018894	3300005560	Soil	DEDLAGQANYAADVLESALAALAALPGADEEQLRLGLADLRSLPGRPAAGLGWVVHKSTGVKPAGSVSL*
Ga0066705_109325062	3300005569	Soil	WLHEAGFRAIDEGERTFWWQHQDLAGQASYAADVLESALPALTQLPGAAQEELQAGLQDLRNLASQPNAGLGWVVHKSTAVR*
Ga0066654_101539905	3300005587	Soil	GQANYAADVLESALAALAALPGADEEQLRLGLADLRSLPGRPAAGLGWVVHKSTGVKPAGSVSL*
Ga0068856_1022720422	3300005614	Corn Rhizosphere	SYWWRDEDLAGQARYAADVLESALDALAQLGSADEQELRAGLRDLRALPSQPGAGLGWVVHKSTAVKPAAP*
Ga0066905_1003492513	3300005713	Tropical Forest Soil	WLREAGFRELDEGERTYWWQGEDLARQANYAADVMESALDALAQLPGVEEEELRAGLEDVRALASQPGAGLGWTLHKSTAVR*
Ga0066905_1019354422	3300005713	Tropical Forest Soil	GERPYWWQDDDLAVQARYASDVLESALDALAQLPGADEGELRAGLRDLRALVDRPGAGLGWVVHKSTAVH*
Ga0081455_104137951	3300005937	Tabebuia Heterophylla Rhizosphere	DDLATQARYAADVLESALDAPDVTEELRRGLEDLRSLPTLPGAGLGWVMHKSTAVR*
Ga0070717_102536202	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	FHDIDPGERPFWWQGDDLAAEANYAADVIESALPALAQLPGTDEEQLRTGLAHLRSLPGRLGAGLGWVVHKSTGTR*
Ga0070717_121323942	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GFREIDEGERTFRWQAEDLEGQARYAADVMESALPSLTQLPGAVEEELRAGLADLRSLPSQPGATLGWIVHKSTATR*
Ga0068871_1012194353	3300006358	Miscanthus Rhizosphere	DDLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPGTAGAGLGWVVHKSTGSKPSGG*
Ga0079222_123843612	3300006755	Agricultural Soil	PFWWRDDDLAGQANYAADVLESALGALAALPGTDEAQLRQGLVDLRSLPGRPGAGLGWVVHKSTGLKPG*
Ga0075428_1000169811	3300006844	Populus Rhizosphere	FWWRDADLASQSRYAADVIESALDALMQLPGTDEEELRAGLEDLRRLPESPRGGLGYVMHKSTAVR*
Ga0075428_1000503484	3300006844	Populus Rhizosphere	DDLERQASYAADVVESAAPALAQLPGVSEEELHTGLADLRELPSHPGAGLGWTLHKSTAVR*
Ga0075431_1017684901	3300006847	Populus Rhizosphere	FWWQNEDLSSQASYAADVIESALAQPPGDEDEELRAGLEDLRSLAGHPGAGLGWTLHKSTAVR*
Ga0075433_118477382	3300006852	Populus Rhizosphere	FWWQGDDLAGQAVYAAEVLESAFDALAALPGADEEQLRAGLEDLRGLRDQPGAGLGWIVHKSTAVR*
Ga0075420_1012458852	3300006853	Populus Rhizosphere	ADLASQSRYAADVIESALDALMQLPGTDEEELRAGLEDLRRLPESPRGGLGYVMHKSTAVR*
Ga0075425_1028294661	3300006854	Populus Rhizosphere	AGFRDVEEGERPFVFEDEDLAHQARYAADVMESALEALAGLPGASEEELRAGLADLRDLPSLPEARLGWVIHKSTGRR*
Ga0075429_1019591022	3300006880	Populus Rhizosphere	FREVDEGERPFWWEGEELAHEASYAADVMESALGALAGLPGTSESELRVGLADLRALPRQPDAGLGWTVHKSTAVR*
Ga0068865_1014639432	3300006881	Miscanthus Rhizosphere	GERPFWWQGEELANQAFYAADVIESALDALARLPGADELELSAGLEDLRGLATQPDAGLGWVVHKSTAVR*
Ga0079215_111449451	3300006894	Agricultural Soil	QGEDLAAQASYAADVIESALPSLAQLPGTEEGELRAGLEHLRSLRTRPGAGLGWVVLKSTAAR*
Ga0066710_1013475951	3300009012	Grasslands Soil	DEGERPYAFRNDDLAHQASYAAEGMESALPALVQLLGADEHELSAGLADLRNLPSVPDARLGWVVHKSTGKR
Ga0111539_105340691	3300009094	Populus Rhizosphere	EAGFGDVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDRPGAGLGWVVHRSTAVR*
Ga0105245_100497355	3300009098	Miscanthus Rhizosphere	LREIGFQHVEEGERPFWWQGEELANQAFYAADVIESALDALARLPGADELELSAGLEDLRGLATQPDAGLGWVVHKSTAVR*
Ga0075418_125902132	3300009100	Populus Rhizosphere	EAGFGDVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0114129_102772073	3300009147	Populus Rhizosphere	DEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0114129_132121602	3300009147	Populus Rhizosphere	GWLTAAGFREIDEGARTFWWTDADLASQASYAADVMESALDALARLPGSSEEELRTGLEDLRNLARLPGAGLGWTLHKSTAVC*
Ga0111538_103122471	3300009156	Populus Rhizosphere	EAGFGDVDEGERPYWWQNDDLAMQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0075423_104418321	3300009162	Populus Rhizosphere	KAGFGDVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDRPGAGLGWVVHRSTAVR*
Ga0075423_122775181	3300009162	Populus Rhizosphere	KAGFGDVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0126307_109390812	3300009789	Serpentine Soil	WLRDGGFRDVDEGERTYCWRDEDLASQSRYAADVIESALDALAEQPGASEGELRRGLADLRELPNQPDAGLGWVMHKSTATR*
Ga0126307_111989782	3300009789	Serpentine Soil	GERPFWWQGADAAREAHYAANVMESAVDALVQLPGVDVADLRAGLADLGELPNRRGAGLGWVVHKSKAVR*
Ga0126313_102307083	3300009840	Serpentine Soil	EDLASQAAYAADVMESALPVLAQLPGVAEDEVRAGLADLRNLEAQPDARLGWVVHKSTATR*
Ga0126313_103871852	3300009840	Serpentine Soil	PFWWQGDDLAGQARYAADVMESALDVLAQLPGAEEDELRAGLDDLRGLASRPGGGLGWVVHKSTAVR*
Ga0126308_109370101	3300010040	Serpentine Soil	REIDDGERPVWWQGDELPGQASYAADVIESALGALVQLPGTRADQLRAGLAELRALPRQADAGLGWAIHKSTAIR*
Ga0126312_105636482	3300010041	Serpentine Soil	FWWHDEDLASQAAYAADVMESALPVLAQLPVVAEDEVRAGLTDLRNLEAQPDARLGWVVHKSTATR*
Ga0126314_104380411	3300010042	Serpentine Soil	REAGFRDVEEGERSFWWQDEDLVGHARYAADVIESALDALAQQPGAGEEELRAGLADLRELPNRPGAGLGWVMHKSTAAR*
Ga0126314_107359162	3300010042	Serpentine Soil	QDEDLVSQALYAADVVESALGALAELPGTDEEELRTGLEDLRSLARRPGAGLGWTLHKSTALR*
Ga0126310_100543073	3300010044	Serpentine Soil	PRWLREAGFRDVDEGERPYWWQDDDLAVQARYAADVLDSALDALAQLPGTDEGELRAGLGDLRALVDRPGAGLGWVVHKSSAVR*
Ga0126310_106667672	3300010044	Serpentine Soil	GERPFWWHDEDLASQAHYAADVIESALDALAQLPDTNEGELRAGLADLRRLPGEPGAGLGWVMHKSTGLR*
Ga0126310_118410931	3300010044	Serpentine Soil	EDLAAQAGYAADVLESALGALAALPGTDEGRLREGLDDLRSLPGRPAAGLGWVVHKSTGGKPVIERAD*
Ga0126311_101545081	3300010045	Serpentine Soil	AFGRLRSKLIVTEVGVVSIDEGERTFWWQDEDLAGQAAYAADVIESAVDALAQLPDTVEEELRTGLEDLRSLRRRADAGLGWTMHKSTALR*
Ga0126311_106837562	3300010045	Serpentine Soil	AGFEKVDEGERAFWWRGEELRRHAVYAADVLESATDALIRLPDMRADELRVGLADLRALPGRSGAGLGWVVHKSTGITLA*
Ga0126311_110827942	3300010045	Serpentine Soil	REVDEGERPYWFEDEELGHQANYAADVLESALDALAQAPGADEDQLRAGLADLRGLPEKPGAGLGWVYHKSTAVR*
Ga0127483_10497151	3300010142	Grasslands Soil	PDLRGQARYAADVIESALPALAQLPGAAEEELRAGLRDLRDLATHPDAGLGWVMHKSTAMR*
Ga0126306_112910521	3300010166	Serpentine Soil	REVDEGERSVWWQDDDLERQAGYVADVMESAIDALVQLPGIAEEELRAGLVDLRGLAHRPGAGLGWVMHKSTAHP*
Ga0134080_104250992	3300010333	Grasslands Soil	WLEAAGFEQVDAGERSFLFQDDELAYESRYAADVMESALGGLTQLPGASEEELHAGLADLRDLPNVPRARLGWVVHKSTGRR*
Ga0105239_134532972	3300010375	Corn Rhizosphere	GFDDVVEGERPFWWRDDDLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPGTPGAGLGWVVHKSTGSKPTGG*
Ga0105239_134964732	3300010375	Corn Rhizosphere	LREAGFRNIDEGEHRFWWQAADLERQADYAADVMESAMDALASQPGAEEAQLRKGLSDLRGLARQPRAGLGWVVHKSTAVR*
Ga0134123_118912351	3300010403	Terrestrial Soil	VGSSPRSAAGFQEIDEGERPFWWTDADLAGQALYAADVLESALDALARLPGASEHELRAGLDDLRALPRLPGAGLGWVVHKSTARR*
Ga0136623_102076751	3300012045	Polar Desert Sand	GEDLAGQATYAADVMESALDSLAQLPGTSRAELRRGLDDLRSLPSQPNASLGWVMHKSTAIR*
Ga0137364_101663984	3300012198	Vadose Zone Soil	EGQRPYAFRNGDLAHQSSYAAEVMESALPALVQLLGADEHELSAGLADLRDLPSVPDARLGWVVHKSSARS*
Ga0150985_1186968882	3300012212	Avena Fatua Rhizosphere	LAGQANYAADVLESALSALVALPGTNEVQLREGLQDLRSLPALPAAGLGWIVHKSTGTKPVTG*
Ga0137371_112466401	3300012356	Vadose Zone Soil	EGERPFDWREKDLAGQAGYAADVIESALPSLAQLPGAAEEELHAGLADLRRLPDHPRGGLGWVVHKATAVR*
Ga0137384_109978112	3300012357	Vadose Zone Soil	EAGERPFLFQDEDLAVESRYAAEVIESALPALTRLPGASEEELRAGLADLRDLPNVPSARLGWVVHKSTGRR*
Ga0137375_103890612	3300012360	Vadose Zone Soil	DAGFRGVNEGERPFSWQGEDLAGQANYAAAVMESALDSLAQLPGTSREELRRGLGDLRSLPNQPSASLGWLMHKSWAIR*
Ga0134051_10759552	3300012398	Grasslands Soil	WWRARDLRGQARYAADVIESALPALAQLPGAAEEELRAGLKDLRDLVSHPDAGLGWVMHKSTAMR*
Ga0134049_12059122	3300012403	Grasslands Soil	GERTFWWRARDLWGQARYAADVIESALPALAQLPGAAEEELRAGLKDLRDLVSHPDAGLGWVMHKSTAMR*
Ga0157285_102160022	3300012897	Soil	GFGDVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0157302_100367441	3300012915	Soil	REAGFGDVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG*
Ga0134087_102837751	3300012977	Grasslands Soil	EAGFRAIDEGERTFWWQHQDLAGQASYAADVLESAVPALTQLPGAAQEELQAGLQDLRNLASQPNAGLGWVVHKSTATR*
Ga0164307_115288632	3300012987	Soil	FWWRDEELAGQANYAADVLESALGALAVLPGTDEEELRLGLQDLRSLPGQPGAGLGWVVHKSTGVK*
Ga0157369_112953191	3300013105	Corn Rhizosphere	PFWWQDDDLASQSSYAADVIESALPALAALPATDEEQLRLGLRDLRSLPSMPKAGLGWVVHKSTGARPAVPVARL*
Ga0157374_125524221	3300013296	Miscanthus Rhizosphere	GFVDVVEGERPFWWRDDDLAGQASYAADVLESALDALPGDEKQLRAGLRDLRSLPATPGAGLGWVVHKSTGVNRG*
Ga0182000_104074682	3300014487	Soil	DLAGQANYAADVIESALPALAQLPGAGEGDLRAGLRDLRNLANQPNAGLGWVVHKSTAVAR*
Ga0134072_103329731	3300015357	Grasslands Soil	RTFWWRARDLRGQARYAADVIESALPALAQLPGAAEEELRAGLKDLRDLVSHRDAGLGWVMHKSTAMR*
Ga0132258_120492662	3300015371	Arabidopsis Rhizosphere	DEGERPFWWQGRELAHEASYAADVMESALGALAGLPGTSESELRVGLADLRALPRRPDAGLGWTVHKSTAVR*
Ga0132256_1017744192	3300015372	Arabidopsis Rhizosphere	FRDVVEGERPYWWRADDLAVQSRYAADVLESALDALVELPGGDRGELRAGLADLRALPTQPGAGLGWIVHKSTAAR*
Ga0184638_11217742	3300018052	Groundwater Sediment	WQNEDLAGQARYAADVIESALDALARLPGVSEKELRAGLEDLRTLPSRPGAGLGWIMHKSAAVR
Ga0184623_102444201	3300018056	Groundwater Sediment	LGEAGFREIDEGKRAFWWQDEDLAGQARYAADVIESALDALVELPGAAEEELRTGLQDLRSLPRRPGAGLGWVLHKSTALG
Ga0184625_106499591	3300018081	Groundwater Sediment	HELASEAPYAADVIESAFDALKQIPGADEDELHAGLAHLRKLPAHGGAGLGWVVHKATATRVDRGSYA
Ga0190265_118631262	3300018422	Soil	EAGFREVDEGERTFWWQEEDLAKQAPYAADVLESALDALAQLPGAREEELRAGLEDLRNLASRPNAGLGWVVHKAAGWRPSSSPSRT
Ga0066655_104477931	3300018431	Grasslands Soil	VDEGQRPYAFRNGDLAHQASYAAEVMESALPALVQLLGADEHELRAGLADLRDLPNVPDARLGWVVHKSTGKR
Ga0066662_120561472	3300018468	Grasslands Soil	RAIDEGERTFWWQHQDLAGQARYAADVLESAVPALTQLPGAAQEELQAGLQDLRNLASQPNAGLGWVVHKSTATR
Ga0066662_121431631	3300018468	Grasslands Soil	GEDLSGQARYAADVMESALPALAQLPGADEEELRAGLHDLRNLAGQPDAGLGWILHKSTATR
Ga0190270_128454472	3300018469	Soil	EGERPYWFEDEELGHQAHYAADVLESALDALVEVPGIDEDQLRAGLADLRGLPEKPGAGLGWVYHKSTAVR
Ga0190271_100931881	3300018481	Soil	QGEDLATEAAYAADVIESALPALVQLPGTSEDELRAGLEHLRRLPGHPDARLGWVVHKSTAAR
Ga0190271_126691552	3300018481	Soil	DVDEGERVFWWQGEELAGQARYAADVIESALDALARLPGASEEELRSGLLDLRGLAGRPGAGLGWTMHKSTAVRAAPG
Ga0187892_103529222	3300019458	Bio-Ooze	FREIDEGERTFWWRDEDLVSQARYAADVIESALAELPRGAAEELRAALEDLRSLPRQPGAGLGWVMHKSTAVR
Ga0222622_100607111	3300022756	Groundwater Sediment	ERPFWWHDEDLAGQANYAADVLESALDTLAALPGTDEEELRVGLQDLRSLPGRPRAGLGWVVHKSMGAKPVSGSASTNQAGG
Ga0209640_100283601	3300025324	Soil	ELAGFREIDPGERLFWWQEEELAGQASYAADVIESAFPSLAQLPGAVEEELSAGLADLRRLPSRPGAGLGWVVHKSTARNAL
Ga0207662_110626871	3300025918	Switchgrass Rhizosphere	RPFWWRDDDLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPGAPGAGLGWVVHKSTGSKPTGG
Ga0207709_102484941	3300025935	Miscanthus Rhizosphere	EGERTFWWRDADLDSQARYAADVIESALDALVQLPGTDEGELRAGLADLRTLSGLPGAGLGYVMHKSTARR
Ga0207704_116000242	3300025938	Miscanthus Rhizosphere	GEELANQAFYAADVIESALDALARLPGADELELSAGLEDLRGLATQPDAGLGWVVHKSTAVR
Ga0207667_112458291	3300025949	Corn Rhizosphere	DVDEGERPYWWQNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRELRALVDQPGAGLGWVVHKSTAVANHLRLG
Ga0207677_114358772	3300026023	Miscanthus Rhizosphere	DDVVEGKRPFWWRDDDLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPGTPGAGLGWVVHKSTGSKPSGG
Ga0207702_103439824	3300026078	Corn Rhizosphere	DLAGQASYAADVLESALGALAELPGTDEAQLRQGLEDLRSLPRTPGAGLGWVVHKSTGSKPSGG
Ga0209156_103481582	3300026547	Soil	RPFWWQDQDLLGQANYAADVMESALPALAQLPGADQEELRAGLTDLRDLASQPDAGLGWVVHKSTAVR
Ga0207636_10004462	3300027479	Soil	QNDDLAVQASYAADVIESALDALAQLPGADEGELRAGLRDLRALVDQPGAGLGWVVHKSTAVANHLRLG
Ga0247818_103608311	3300028589	Soil	GERPFWWQSDEVAREAPYAADVAESALDALLQLPGTDEGELRAGLADLRTLPQQPGAGLGWVVHKSTAVR
Ga0307285_101379482	3300028712	Soil	EGERPFWWQGEDLSREAQYAADVLESALSAIAQLPGVAEEELRAGLEDLRHLADQPGAGLGWVVHKSTAVR
Ga0307303_101044602	3300028713	Soil	EGERRFWWQDETLAGQALYAADVIESALDALAELPGTDEQELLVGLEDLRSLPSKPGAGLGWVVHKSTGLR
Ga0307309_101271731	3300028714	Soil	GFENVVEGERPFWWHDEDLAGQANYAAEVLESALDTLAALPGTDEEELRVGLQDLRSLPGRPRAGLGWVVHKSMGAKPVSGSASTNQAGG
Ga0307298_102563952	3300028717	Soil	GERPFWWQDEDLSSQASYAADVIESALEALARLPGVMEEELRAGLADLRKLASQPGAGMGWVVHKSRAAR
Ga0307318_103526951	3300028744	Soil	YWWTDEDLARQALYAADVVESALDALAQLPGADKEELRRGLDDMRSLADSPGAGIGWVVHKSTALR
Ga0307288_100001381	3300028778	Soil	ERPFWWHDEDLAGQANYAAEVLESALDTLAALPGTDEEELRVGLQDLRSLPGRPRAGLGWVVHKSMGAKPVSGSASTNQAGG
Ga0307282_106604132	3300028784	Soil	AEDLAGQAGYAADVIESALPSLAQLPATAEEELCAGLADLRALPSHRGAALGWVVHKSTAVG
Ga0307323_103584542	3300028787	Soil	QDEDLAGQARYAADVIESALEALAQLPGVAEEELRAGLEDLRGLGSQPGAGLGWVMHKSTAAR
Ga0307281_101161832	3300028803	Soil	PEWLEEAEFREVDAGERSFWWQSEDLDGQSSYAADVIESALPSLAQLPGADEQELRAGLHDLRGLPSHSGAGLGWVVHKSTAVR
Ga0307312_100191696	3300028828	Soil	FWWHDEDLAGQANYAADVLESALDTLAALPGTDEEELRVGLQDLRSLPNRPRAGLGWVVHKSMGAKPVSGSASTNQAGG
Ga0307308_105542132	3300028884	Soil	FENVVEGERPFWWQDEDLAGQANYAADVLESALDTLAALPGTDGEQLREGLEDLRSLPGRPRAGLGWVVHKSTGAKPVRQSPLFAVSASTNQAGGCPPSA
Ga0268241_101815952	3300030511	Soil	EDLAGQASYAADVLESALPALAALRGADEDQLRAGLQDLRSLPGLPDAGLGWVVHKSTGAKPPGG
Ga0308190_11759952	3300030993	Soil	GGRPFWWHDEDLAGQANYAAEVLESALDTLAALPGTDEEELRVGLQDLRSLPGRPRAGLGWVVHKSMGAKPVSGSASTNQAGG
Ga0308181_11748091	3300031099	Soil	ENVVEGERPFWWHDEDLAGQANYAAEVLESALDTLAALPGTDEEELRVGLQDLRSLPGRPRAGLGWVVHKSMGAKPVSGSASTNQAGG
Ga0299913_113620412	3300031229	Soil	AAGFREVDEGERVFWWQGEDLAGQAGYAAEVIESALDALARLPGAVEEELRAGLLDLRGLAGRPGAGLGWTMHKSTAVR
Ga0299913_113874972	3300031229	Soil	WQDADLAGQARYAADVIESALGSLAQLPGAAEPELRAGLADLRRLPTLPGAGLGWVVHKSTAVR
Ga0307412_111445211	3300031911	Rhizosphere	EGERPYWWQDDDLAVQARYAADVMESALDALARLPGIDAADLVAGLADLRRLPEQREAGLGWIVHKSIAVR
Ga0307412_120117582	3300031911	Rhizosphere	DEGERPVWWQDDELPGQANYAADVIESALDALVQLPGTSEDELRRGLADLRALPRQPSGGLGWVIHKSTATC
Ga0307409_1000328321	3300031995	Rhizosphere	WQDEDLSGQANYAAEVMASALAALTQLPDVAEEELRSGLVDLRNLAGQPGAGLGWVVHKSTAVR
Ga0307415_1014550832	3300032126	Rhizosphere	EGERPVWWQDDELPGQANYAADVIESALDALVQLPGASEDELRRGLADLRALPRQPSGGLGWVIHKSTATC
Ga0247830_115443141	3300033551	Soil	ECPERPFWWQGRELAHEASYAADVMESALGALAGLPGTSESELRVGLADLRALPRRPDAGLGWTVHKSTAVR
Ga0364929_0241483_2_202	3300034149	Sediment	FWWQSEDLDGQSSYAADVIESALPSLAQLPGADEQELRTGLHDLRGLPSHSGAGLGWVVHKSTAVR
Ga0364935_0161901_476_709	3300034151	Sediment	AVDEGERPFWWRHDELSGQARYAADVIESALPALAQLPGTDEQNLRAGLRDLRGLPTQPDAGLGWVMHKSTAVRKEA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066816

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences