Metagenome / Metatranscriptome Family F066649

Basic Information
Family ID	F066649
Family Type	Metagenome / Metatranscriptome
Number of Sequences	126
Average Sequence Length	49 residues
Representative Sequence	MTKQIEIHGQRVELYSPDQGRTWSSSPQSIVAYGQRKKMLRLELQKWF
Number of Associated Samples	115
Number of Associated Scaffolds	126

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.67 %
% of genes near scaffold ends (potentially truncated)	84.92 %
% of genes from short scaffolds (< 2000 bps)	87.30 %
Associated GOLD sequencing projects	115
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Most Common Taxonomy
Group	Bacteria (87.302 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment (10.318 % of family members)
Environment Ontology (ENVO)	Unclassified (37.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (30.159 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.63% β-sheet: 17.11% Coil/Unstructured: 55.26%
Feature Viewer

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Pfam ID	Name	% Frequency in 126 Family Scaffolds
PF11752	DUF3309	12.70
PF04120	Iron_permease	7.94
PF01391	Collagen	4.76
PF13545	HTH_Crp_2	3.17
PF02954	HTH_8	2.38
PF06745	ATPase	2.38
PF00210	Ferritin	2.38
PF04972	BON	1.59
PF02806	Alpha-amylase_C	1.59
PF03631	Virul_fac_BrkB	1.59
PF05532	CsbD	1.59
PF00072	Response_reg	0.79
PF06305	LapA_dom	0.79
PF08937	DUF1863	0.79
PF01435	Peptidase_M48	0.79
PF00665	rve	0.79
PF17167	Glyco_hydro_36	0.79
PF02518	HATPase_c	0.79

COG ID	Name	Functional Category	% Frequency in 126 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	1.59
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	1.59
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.59
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	1.59
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.59
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.79
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.79
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.79
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.30 %
Unclassified	root	N/A	12.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.30 %
Unclassified	root	N/A	12.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.30 %
Unclassified	root	N/A	12.70 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.13 %
Unclassified	root	N/A	12.70 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.59 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.59 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.59 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.79 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	29.37 %
Unclassified	root	N/A	12.70 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.59 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.59 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	29.37 %
Unclassified	root	N/A	12.70 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.59 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.59 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	0.79 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	28.57 %
Unclassified	root	N/A	12.70 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.59 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.59 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.79 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	28.57 %
Unclassified	root	N/A	12.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.59 %
Fuscovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Fuscovulum	0.79 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.79 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	28.57 %
Unclassified	root	N/A	12.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.59 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.79 %
Fuscovulum blasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Fuscovulum → Fuscovulum blasticum	0.79 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	28.57 %
Unclassified	root	N/A	12.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.59 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.79 %
Fuscovulum blasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Fuscovulum → Fuscovulum blasticum	0.79 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	28.57 %
Unclassified	root	N/A	12.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.59 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.59 %
Anaeromyxobacter dehalogenans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	0.79 %
Fuscovulum blasticum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Fuscovulum → Fuscovulum blasticum	0.79 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	0.79 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10824610	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	939	Open in IMG/M
3300000559\|F14TC_100565026	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300000891\|JGI10214J12806_12079122	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300000953\|JGI11615J12901_13895199	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300004019\|Ga0055439_10300743	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300004022\|Ga0055432_10122634	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300004145\|Ga0055489_10149569	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300004266\|Ga0055457_10093743	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	799	Open in IMG/M
3300005338\|Ga0068868_100231693	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300005339\|Ga0070660_101899645	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300005439\|Ga0070711_101309607	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	629	Open in IMG/M
3300005456\|Ga0070678_100071798	All Organisms → cellular organisms → Bacteria	2592	Open in IMG/M
3300005459\|Ga0068867_102225184	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005471\|Ga0070698_100349505	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1410	Open in IMG/M
3300005471\|Ga0070698_100531254	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300005471\|Ga0070698_101155737	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300005536\|Ga0070697_101700339	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	564	Open in IMG/M
3300005549\|Ga0070704_100955419	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300005556\|Ga0066707_10506353	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	783	Open in IMG/M
3300005574\|Ga0066694_10532831	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300005617\|Ga0068859_100258511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1832	Open in IMG/M
3300005889\|Ga0075290_1005290	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300006791\|Ga0066653_10522051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Fuscovulum → Fuscovulum blasticum	601	Open in IMG/M
3300006852\|Ga0075433_10492347	Not Available	1080	Open in IMG/M
3300006894\|Ga0079215_10233866	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	960	Open in IMG/M
3300006904\|Ga0075424_100345524	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1585	Open in IMG/M
3300006918\|Ga0079216_11038100	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638	Open in IMG/M
3300006969\|Ga0075419_10369540	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300007076\|Ga0075435_100639480	Not Available	923	Open in IMG/M
3300007255\|Ga0099791_10117915	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1229	Open in IMG/M
3300009053\|Ga0105095_10075962	All Organisms → cellular organisms → Bacteria → Proteobacteria	1813	Open in IMG/M
3300009087\|Ga0105107_10250045	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300009092\|Ga0105250_10574062	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300009094\|Ga0111539_12622344	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300009100\|Ga0075418_10821063	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300009111\|Ga0115026_10491576	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	910	Open in IMG/M
3300009147\|Ga0114129_10093313	All Organisms → cellular organisms → Bacteria	4170	Open in IMG/M
3300009147\|Ga0114129_10685977	All Organisms → cellular organisms → Bacteria → Proteobacteria	1318	Open in IMG/M
3300009162\|Ga0075423_11279092	Not Available	784	Open in IMG/M
3300009167\|Ga0113563_12560941	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300009609\|Ga0105347_1143212	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	930	Open in IMG/M
3300009678\|Ga0105252_10197506	Not Available	860	Open in IMG/M
3300010401\|Ga0134121_10133793	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300011409\|Ga0137323_1078171	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300011417\|Ga0137326_1010219	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300011419\|Ga0137446_1137120	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300011442\|Ga0137437_1315957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300011445\|Ga0137427_10461762	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300012035\|Ga0137445_1118986	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	538	Open in IMG/M
3300012134\|Ga0137330_1039862	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	614	Open in IMG/M
3300012171\|Ga0137342_1046849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	865	Open in IMG/M
3300012204\|Ga0137374_10043047	All Organisms → cellular organisms → Bacteria	4753	Open in IMG/M
3300012207\|Ga0137381_11049116	Not Available	702	Open in IMG/M
3300012353\|Ga0137367_10390255	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300012923\|Ga0137359_10746675	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300012931\|Ga0153915_10605609	All Organisms → cellular organisms → Bacteria → Proteobacteria	1260	Open in IMG/M
3300012931\|Ga0153915_12956254	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012988\|Ga0164306_11315470	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	611	Open in IMG/M
3300014883\|Ga0180086_1033107	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1202	Open in IMG/M
3300015255\|Ga0180077_1117592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300015262\|Ga0182007_10321949	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300016445\|Ga0182038_12171478	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300017997\|Ga0184610_1046106	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300018031\|Ga0184634_10213481	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	880	Open in IMG/M
3300018052\|Ga0184638_1175608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	763	Open in IMG/M
3300018052\|Ga0184638_1233514	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300018052\|Ga0184638_1293622	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300018063\|Ga0184637_10513205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	694	Open in IMG/M
3300018067\|Ga0184611_1152805	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	817	Open in IMG/M
3300018068\|Ga0184636_1281972	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300018076\|Ga0184609_10058503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1661	Open in IMG/M
3300018079\|Ga0184627_10278662	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300018081\|Ga0184625_10018577	All Organisms → cellular organisms → Bacteria	3295	Open in IMG/M
3300018081\|Ga0184625_10294549	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	848	Open in IMG/M
3300018084\|Ga0184629_10463600	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300019789\|Ga0137408_1223935	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300021432\|Ga0210384_10524629	Not Available	1066	Open in IMG/M
3300025001\|Ga0209618_1077585	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10	510	Open in IMG/M
3300025160\|Ga0209109_10078121	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300025165\|Ga0209108_10211996	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300025312\|Ga0209321_10373068	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	677	Open in IMG/M
3300025314\|Ga0209323_10263793	Not Available	1093	Open in IMG/M
3300025318\|Ga0209519_10046503	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → Anaeromyxobacter dehalogenans	2449	Open in IMG/M
3300025319\|Ga0209520_10650288	Not Available	600	Open in IMG/M
3300025327\|Ga0209751_10464262	Not Available	1040	Open in IMG/M
3300025560\|Ga0210108_1078670	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300025905\|Ga0207685_10174849	All Organisms → cellular organisms → Bacteria → Acidobacteria	991	Open in IMG/M
3300025917\|Ga0207660_11466812	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	552	Open in IMG/M
3300025917\|Ga0207660_11647704	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300025932\|Ga0207690_11096858	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300025936\|Ga0207670_10102835	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300025945\|Ga0207679_11911061	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300025949\|Ga0207667_11807180	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300026014\|Ga0208776_1018202	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	593	Open in IMG/M
3300027424\|Ga0209984_1037692	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	692	Open in IMG/M
3300027665\|Ga0209983_1009736	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1964	Open in IMG/M
3300027831\|Ga0209797_10239037	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300027835\|Ga0209515_10565653	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	576	Open in IMG/M
3300027840\|Ga0209683_10315033	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	720	Open in IMG/M
3300027843\|Ga0209798_10487357	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027909\|Ga0209382_10239216	All Organisms → cellular organisms → Bacteria	2066	Open in IMG/M
3300030606\|Ga0299906_10518796	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300030628\|Ga0247629_10315685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	575	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10035638	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300031716\|Ga0310813_11212265	Not Available	695	Open in IMG/M
3300031740\|Ga0307468_100231142	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1282	Open in IMG/M
3300031740\|Ga0307468_101838391	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	575	Open in IMG/M
3300031820\|Ga0307473_10914671	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300031854\|Ga0310904_10868735	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031944\|Ga0310884_10767640	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300031965\|Ga0326597_10072192	All Organisms → cellular organisms → Bacteria → Proteobacteria	4264	Open in IMG/M
3300031997\|Ga0315278_12093009	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300032205\|Ga0307472_100988371	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	787	Open in IMG/M
3300033407\|Ga0214472_11102378	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	697	Open in IMG/M
3300033407\|Ga0214472_11402658	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	601	Open in IMG/M
3300033419\|Ga0316601_102592688	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300033434\|Ga0316613_11187374	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300034090\|Ga0326723_0327191	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300034147\|Ga0364925_0298113	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300034151\|Ga0364935_0073250	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.54%
Host-Associated	Host-Associated	17.46%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Aquatic	Environmental → Aquatic	32.54%
Plants	Host-Associated → Plants	17.46%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.62%
Sediment	Environmental → Aquatic → Sediment	19.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.90%
Freshwater	Environmental → Aquatic → Freshwater	8.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.56%
Marine	Environmental → Aquatic → Marine	3.97%
Floodplain	Environmental → Terrestrial → Floodplain	1.59%
Peat	Environmental → Terrestrial → Peat	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	19.84%
Loam	Environmental → Terrestrial → Soil → Loam	9.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.52%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.97%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.38%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.59%
Lake	Environmental → Aquatic → Freshwater → Lake	0.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.79%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	19.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.56%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.97%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.38%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.38%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.59%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.59%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.79%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.32%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.76%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.17%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.17%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.38%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.59%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.59%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.59%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.59%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.59%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.59%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.59%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.79%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.79%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004019	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011419	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012035	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2	Environmental	Open in IMG/M
3300012134	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT142_2	Environmental	Open in IMG/M
3300012171	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT466_2	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300015255	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT466_16_10D	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025001	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 3 (SPAdes)	Environmental	Open in IMG/M
3300025155	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 4	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025312	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 4 - CSP-I_5_4	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300025560	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026014	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 (SPAdes)	Environmental	Open in IMG/M
3300026062	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030628	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb6 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066649

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_108246101	3300000363	Soil	MIKQIEIHGQRVKLYSSDKGRTWASSPQSIVAYGQRKRMLRCDLQK
F14TC_1005650263	3300000559	Soil	MKKQIEIHGHRVELYSPDKGRTWSSNPQSIVAYVQRKTMLRMELQKRFA
JGI10214J12806_120791222	3300000891	Soil	MTKKIAIHGQRVQLYSMDEGRTWSSSPQSIVAYGQRKSMLRLELQKSFEQIDDGMQD
JGI11615J12901_138951992	3300000953	Soil	MIKLIDVHGRRVKLYSSDNGRTWSSSPQAIIAYGYRKQLLRGDLQKAF
Ga0055439_103007432	3300004019	Natural And Restored Wetlands	MIKQIDIHGQRVKLYSSDNGRTWSSSPQSIVAYSQRKQLSRCDLQKAFERLSDIQDPE
Ga0055432_101226341	3300004022	Natural And Restored Wetlands	MIKQIEIHGQCFELYSPDDGRTWSSSPQSIVAYRRRKKMLRLELQ
Ga0055489_101495691	3300004145	Natural And Restored Wetlands	VVKQIDIHGRRVKLYSSDKGRTWSSSPQAILAYGQRQQILRRDL
Ga0055457_100937432	3300004266	Natural And Restored Wetlands	MIKQIDVHGQRVKLYSSDNGRTWSSSPQSIVAYGQRKQLLRCD
Ga0068868_1002316934	3300005338	Miscanthus Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQRKEILR
Ga0070660_1018996451	3300005339	Corn Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQRKEIL
Ga0070711_1013096072	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTKKIEIHGQRVQLYSLDEGRTWSSSPQSIIAYGQRKTTLRLELQKRFERLDGL
Ga0070678_1000717984	3300005456	Miscanthus Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQRKEILRLELQERFA
Ga0068867_1022251841	3300005459	Miscanthus Rhizosphere	MKKQIEIHGQRVDLYSLDQGRTWASSPQSIIACKEREAAL
Ga0070698_1003495053	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKKRIVEIHGQRVGLYSLDLGRTWASSRQSIVAYGQRKTTLRWELQK*
Ga0070698_1005312543	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTKQIEIYRQRVALYSPDKGRIWSSSPQSIVAYGQRKTMLRLELQKSF
Ga0070698_1011557371	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQIEIYGQRVALYSPDKGRTWSSSPQSIVAFGQRKKMLRLELK
Ga0070697_1017003391	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MMKQIEIYGRRVALYSPDKGRTWSSSPRLIVAYRQRKKMLRLELQKSFEQIA*
Ga0070704_1009554191	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	QTPTKAKESFMKKRIVEIHGQRVGLYSLDLGRTWASSRQSIVAYGQRKTTLRWELQK*
Ga0066707_105063532	3300005556	Soil	MREFMMKQIEIYGQRVELYSPDKGRTWSSCPQSIVAYGQRKTMLRLE
Ga0066694_105328311	3300005574	Soil	MTKKIEIHGQRVQLYSLDEGHTWSSSPQSIVAYGQRKTTLRL
Ga0068859_1002585111	3300005617	Switchgrass Rhizosphere	MVKQIEIYGERVKLYSLDGGCTWSSSPQSIVAYGRRKT
Ga0075290_10052905	3300005889	Rice Paddy Soil	MIKQIELHGQRVKLYSSDKGRTWASSPQSIVAYGQRKRM
Ga0066653_105220511	3300006791	Soil	MTKKIEIHGQRVQLYSLDEGHTWSSSPQSIVAYGQRKTTLRLELQKRFERLDGL
Ga0075433_104923472	3300006852	Populus Rhizosphere	MTKQIKIHGQRVQLYSLDEGLTWSSSRQSIVAYGQRKRLLRSDLQKIFERL
Ga0079215_102338662	3300006894	Agricultural Soil	VKSSSDAENFMTKQIEIHGRRVQLYSLDEGRTWASSPQSIVAYGQRKTMLRLELQKSFERID
Ga0075424_1003455243	3300006904	Populus Rhizosphere	MMKQIEIYGRRVALSSPDKGRTWSSSPRLIVAYRQRKKMLRLELQKSFERIA*
Ga0079216_110381002	3300006918	Agricultural Soil	VKSSSDAENFMTKQIEIHGRRVQLYSLDEGRTWASSPQSIVAYGQRKTMLRLELQKSFERIDGMP
Ga0075419_103695401	3300006969	Populus Rhizosphere	MKKQIEIHGQRVELCSSDEGRTWSSNPQSIVAYGQRKTMLRLELQKRFARIDGMQ
Ga0075435_1006394802	3300007076	Populus Rhizosphere	MMTKQIEIHGQRVRLFSSAEGRTWSSSPRPIDAYSQRKLMSGLELQKSFARIDKR
Ga0099791_101179153	3300007255	Vadose Zone Soil	MTKKIEIHGQRVQLYSLDEGHTWSRSPQSIVAYGQRKTTLRLEL
Ga0105095_100759621	3300009053	Freshwater Sediment	VLKQIEIHGQRFEIFYSPDDGRTWSSSPPSIVAYGRRKKTLRLELQKRFELIRTT
Ga0105107_102500451	3300009087	Freshwater Sediment	MTKQIEINGQRVKLYSLDGGRTWSSSPQSIVAYGQRKMMLR
Ga0105250_105740621	3300009092	Switchgrass Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGR
Ga0111539_126223441	3300009094	Populus Rhizosphere	MTKQIEIHGQHVQLYSLDEGRTWSSSPQSIIAYGQRKTT
Ga0075418_108210632	3300009100	Populus Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQ
Ga0115026_104915761	3300009111	Wetland	MIKQIDIHGQRVKLYSSDKGRTWSSSPQSIVAYGQRQQALR
Ga0114129_100933131	3300009147	Populus Rhizosphere	MKKQIEIHGQRVELCSSDEGRTWSSNPQSIVAYGQRKTMLRLELQKRF
Ga0114129_106859771	3300009147	Populus Rhizosphere	MTKRIEIHGQRVQLYSLDEGRTWSSSPQSIIAYGQRKT
Ga0075423_112790922	3300009162	Populus Rhizosphere	MTKQIEIHGQHVQLYSLDEGRTWSSSPQAIAAYGQ
Ga0113563_125609413	3300009167	Freshwater Wetlands	VRAVIKQIEIHGQRFELYSPDNGRTWPSSRQSIVAYGRRKK
Ga0105347_11432121	3300009609	Soil	MKKQIEIHGQRVELYSPDKGRTWSSSPQSILAYGQRKTMLRLELQKSFERIDAMQDPD
Ga0105252_101975062	3300009678	Soil	MIKQIEIHGQRFELYSPDDGRTWSSSLQSIVAYERRKTILRLALQKRFELIRATED
Ga0134121_101337935	3300010401	Terrestrial Soil	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQRKEILRLEL
Ga0137323_10781712	3300011409	Soil	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIIAYGQRKTMLRLELQKRFERID
Ga0137326_10102192	3300011417	Soil	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIIAYGQRKTMLRLELQKRFERIDEMQDPRSK
Ga0137446_11371201	3300011419	Soil	MTKLIEIHGQPVKLYSSDKGCTWSSSPQSIIAYGQRKQMLRWELQKRFE
Ga0137437_13159571	3300011442	Soil	MMKQIEIHGQRVALYSPDKGRTWSSSPKSIVAYGQRKKMLRLE
Ga0137427_104617621	3300011445	Soil	MIKQIEIHGQRFELYSPDDGRTWSSSLQSIVAYERRKTIL
Ga0137445_11189861	3300012035	Soil	MVKQIAIHGQRVKLFSSDKGRTWSSNPRSIVAYGQRKQRLCCELQKTFERVDE
Ga0137330_10398621	3300012134	Soil	VVKQIYIQGQRVKLYSSDKGRTWSSSPQSIVAYGQRKQVLRGELQKAFER
Ga0137342_10468492	3300012171	Soil	MMKQIEIHGQRVELYSLAKGRTWSSSPQSIIAYGQREKMLRLELQ
Ga0137374_100430475	3300012204	Vadose Zone Soil	MKKQIEIHGQRVELCSSDEGRTWSSNPQSIVAYGQRKTMLRLELQKRFARIDDMQDPDPISQNLRFQ*
Ga0137381_110491162	3300012207	Vadose Zone Soil	MTKKIEIHGQRVQLYSLDEGHTWSSSPQSIVAYGQRKTTLRLELQKRFERLDGLQYPD
Ga0137367_103902553	3300012353	Vadose Zone Soil	MKKQIEIHGQRVELCSSDEGRTWSSNRKSIVAYRRRKTMLRLELQKRFEH
Ga0137359_107466752	3300012923	Vadose Zone Soil	MTKRIEIYGQRVQLYSLDEGRTWSSSPQSIIAYGQRKTTLRLELQKRFERLDGMQDPDP
Ga0153915_106056091	3300012931	Freshwater Wetlands	DTMLKQIENNGQRFELHSADQGRTWSSSPRSIIAYARRKKTAQLELQKKFEEIDET*
Ga0153915_129562543	3300012931	Freshwater Wetlands	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIVAYERR
Ga0164306_113154702	3300012988	Soil	MTKQIEIHGKRVQLYSLDEGRTWSSSPQSIIAYGQRKTTLRLELQKRFERV
Ga0075312_10200262	3300014254	Natural And Restored Wetlands	MTKQIEIHGQRVQLYSFDDGRTWSSTPQSIVAFGQRQTLLRLELQKSFERIDVMPDSIRITSLNLRSQ*
Ga0180086_10331071	3300014883	Soil	MVKQIEIHGQRIEVHSPDKGRTWSSSPRAIVAYGQRKRMLRFELQKRF
Ga0180077_11175921	3300015255	Soil	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIIAYRQRKTMLRLELQKRFERIDEMQDPRSK
Ga0182007_103219491	3300015262	Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQREEILRL
Ga0182038_121714781	3300016445	Soil	MTKQVEIHGQRVKVYSSDEGRTWSSSPRPIDAYSQRKM
Ga0184610_10461064	3300017997	Groundwater Sediment	MMKQIEIYGQRVALYSPDKGRTWSSSPQSIIAYGQRKTMLRLELQKSFERIDKMQDPRSE
Ga0184634_102134811	3300018031	Groundwater Sediment	MLKQIEINGQRFELYSPDKGRTWSSSPRSIVAFGRRKKMLSLELRKRFELMDE
Ga0184638_11756081	3300018052	Groundwater Sediment	MMKQIEIHGQRVKLYSSDKERTWSSSPQSIVAYGQRKTMLRLELQKR
Ga0184638_12335142	3300018052	Groundwater Sediment	MMKQIEIYGQWVALYSPDKGRTWSSSPQSIVAFGQRKKMLRLELKQRFA
Ga0184638_12936221	3300018052	Groundwater Sediment	MTKQIEIHGQRVELYSPDQGRTWSSSPQSIVAYGQRKKMLRLELQKWF
Ga0184637_105132051	3300018063	Groundwater Sediment	MKKQIEIHGQRIELYSPDKGRTWSSSPQSIVAYGQRQEILRLELKQRFARIDEMQDPDP
Ga0184611_11528052	3300018067	Groundwater Sediment	VSDDEPDQENFMMKQIEIYGKRLALYSPDKGRTWSSSPRLIVAYRQRKKMLRLELQKSFERIA
Ga0184636_12819723	3300018068	Groundwater Sediment	MIKQIEIYGQRVKLYSSDKGRTWSSSSQSIVAYGQR
Ga0184609_100585035	3300018076	Groundwater Sediment	MMKQIEIYGQRVALYSPDKGRTWSSSPQSIVAYGQRKTMLR
Ga0184627_102786623	3300018079	Groundwater Sediment	MMKQIEIYGQRVALYSPDKGRTWSSSPQSIVAYGQ
Ga0184625_100185775	3300018081	Groundwater Sediment	MMKQIEIYGKRLALYSPDKGRTWSSSPRLIVAYRQRKKMLRLELQKSFERIA
Ga0184625_102945491	3300018081	Groundwater Sediment	MTKKIEIHGQRVQLYSLDEGRTWSSSPQSIIAYGQRKTTLRLELQKRFER
Ga0184629_104636002	3300018084	Groundwater Sediment	MKKRIDIHGQRVELYSSDEGRTWTSNPQSIVAYGQRKEILRLEL
Ga0137408_12239353	3300019789	Vadose Zone Soil	MKKQIEIHGKRVELCSSDEGRTWSSNPQSIVAYIQRKTMLRLELQKRFARIDE
Ga0210384_105246292	3300021432	Soil	MTKQIEIHGQRVQLYSLDEGRTWSSSPQSIVAYGQRKTM
Ga0209618_10775851	3300025001	Soil	MMKQIELYGQCFELYSADGGRTWSSDPRSIVAYEQRREL
Ga0209320_100238566	3300025155	Soil	MTKQIEIHGQRVQLYSFDDGRTWSSTPQSIVAFGQRKTLLRLELQKSFERIDVVPDPIRITSLNLRS
Ga0209619_105022612	3300025159	Soil	MTKQIEIHGQRVQLYSFDDGRTWSSTPQSIVAFGQRKTLLRLELQKSFERIDVMPDPIRITSLNLRSQ
Ga0209109_100781211	3300025160	Soil	MMKQIEIHGQRIELYSPDKGRTWSSNPRSIVAYGQRKKMLRLELQKGFER
Ga0209108_102119961	3300025165	Soil	MVKQIEVHGQRVELYSLDEGHTWSSNPQSIVAYGQRKELSR
Ga0209321_103730683	3300025312	Soil	MMKQIEIHGQRIELYSPDKGRTWSSSSQSIVAYGRRKKTLSLELQKRFER
Ga0209323_102637932	3300025314	Soil	MTKQIEIKGQRVKLYSSDNGRTWSSSPQSIVAYGQRQTMLRLELQKRFERI
Ga0209519_100465031	3300025318	Soil	MMKQIEIYGKRIEVYSPDKGRTWSSSPRAIVAYGQRKRM
Ga0209519_100623693	3300025318	Soil	MTKQIEIHGQRVQLYSFDDGRTWSSTPQSIVAFGQRKTLLRLELQKSFERIDVVPDPIRITSLNLRSQ
Ga0209520_106502882	3300025319	Soil	MKQIEVHGRRVKLYSPDGGRTWSSNPQSIVAYGQRKELLR
Ga0209751_104642621	3300025327	Soil	MTKQIEIHGQRVQLYSLDGGCTGSSRPQSMVAYGQRKKMLRLEIQQR
Ga0210108_10786702	3300025560	Natural And Restored Wetlands	MTKQIVVHGQRVKLYCQDGGHTWSSNPQAISAYGRRKELLRLELKYSFARIDEMRDLDPE
Ga0207685_101748492	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTKQIEIQGQRVQLYSLDEGRTWSSSPQSIVAYGQRQTVLRLELQKRFARI
Ga0207660_114668122	3300025917	Corn Rhizosphere	MTKKIAIHGQRVQLYSMDEGRTWSSSPQSIVAYGQRKSMLRLELQKSFEHIDDG
Ga0207660_116477041	3300025917	Corn Rhizosphere	MKKRIDLHGQRVELYSADEGRTWTSSPQSIIAYRQRK
Ga0207690_110968581	3300025932	Corn Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGRRK
Ga0207670_101028355	3300025936	Switchgrass Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQRKEI
Ga0207679_119110611	3300025945	Corn Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGRRKEILRLELKERFA
Ga0207667_118071802	3300025949	Corn Rhizosphere	MKKRIDIHGQRVELYSSDQGRTWSSNPQLIAAYGQRKEILRLELKERFAR
Ga0208776_10182021	3300026014	Rice Paddy Soil	MIKQIELHGQRVKLYSLDKGRTWASSPQSIVAYGQRKRM
Ga0208654_10131171	3300026062	Natural And Restored Wetlands	MTKQIEIHGQRVQLYSFDDGRTWSSTPQSIVAFGQRQTLLRLELQKSFERIDVMPDSIRITSLNLRSQ
Ga0209984_10376921	3300027424	Arabidopsis Thaliana Rhizosphere	MMKQIEIYGQRVALYSPDKGRTWSSSPQSIVAYGQRKAMLRLELQKGFERIDGEMQDPD
Ga0209983_10097361	3300027665	Arabidopsis Thaliana Rhizosphere	MIKQIELHGQRVKLYSSDKGRTWASSPQSIVAYGQRKRMLRCDLQKTFERLEEIQDLDSPRS
Ga0209797_102390372	3300027831	Wetland Sediment	MKKTIEIHGQRVTLFSSDEGRTWASNPQSTIAYGEREEMLRR
Ga0209515_105656531	3300027835	Groundwater	VVKQIEINGQRFELYSPDKGRTWSSSPRSIVAYGQRKKMLRLEL
Ga0209683_103150331	3300027840	Wetland Sediment	MTKQIEIHGQRVKIYSLDKGRTWSSSPQSIVAYGQREKMLRNDL
Ga0209798_104873573	3300027843	Wetland Sediment	MIKQIEIHGRRVKLYSSDKGRTWSSSPQSIVAYGQRKQT
Ga0209382_102392163	3300027909	Populus Rhizosphere	MMKQIEIHGQRVQLYSLDKGSTWSSSPQAIVAYGQRKSMLRLELQKS
Ga0299906_105187961	3300030606	Soil	MIKQIEIHGQCFELYSPDDGRTWSSSPQSIVAYGRRKTMLCLELQKRFGLIRATE
Ga0247629_103156851	3300030628	Soil	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIVAYGQRKKILRVELQKSFERIAEM
(restricted) Ga0255310_100356381	3300031197	Sandy Soil	LIKQIEIHGQRFELYSPDEGRTWSSSPQSIVAYGRRKKKSRLE
Ga0299913_103458022	3300031229	Soil	MTKQIEIHGQRVQLYSFDDGRTWSSTPQSIVAFGQRKTLLRLELQKSFERIDVVPEPIRITSLNLRSQ
Ga0310813_112122652	3300031716	Soil	MIKQVEVHGHRIKLYSLDGGQTWSSSPQSIVAYRHRERL
Ga0307468_1002311422	3300031740	Hardwood Forest Soil	MTKQIEIHGQRVQLYSLGEGHTWSSSPQSIVAYGQRKTMLRLELQKRFERIDGDAGPRSE
Ga0307468_1018383911	3300031740	Hardwood Forest Soil	MTKQIEIHGQRVQLYSLDEGRTWSSSPQAIAAYGQRQTML
Ga0307473_109146712	3300031820	Hardwood Forest Soil	MTKQIEIHGQRVQLYSLGEGHTWSSSPQSIVAYGQRKTMLRLELQKRFERIDGDAG
Ga0310904_108687351	3300031854	Soil	MTKQIEIHGQRVRLYSLDEGHTWASSQQSIVDYGQRQTMLRLELQKRF
Ga0310884_107676402	3300031944	Soil	MKKIIEIHGQRVELYSRDEGRTWSSNPQLIVAYEQRRE
Ga0326597_100721925	3300031965	Soil	MIKQIEIYGQRVKLYSSDKGRTWSSSSQSIVAYGQRK
Ga0315278_120930092	3300031997	Sediment	MIKQIEIYGQRLKLRSVDKERTGSSSPQSIVACGQRKQM
Ga0307472_1009883711	3300032205	Hardwood Forest Soil	MMKQIEIYGRRVALYSPDKGRTWSSSPRLIVAYRQRKKMLRLELQKSFEQIA
Ga0214472_111023783	3300033407	Soil	MIKQIEIHGQCVELYSPDDGRTWSSSPRLIVAYERRKKTLRLDLQKRFERID
Ga0214472_114026581	3300033407	Soil	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIVDYGQRKKMLRLELQKRFERMAEMQDTDP
Ga0316601_1025926882	3300033419	Soil	MKKIIEIHGQRVELYSLDEGRTWSSNPQSIVAYGQRQETLRLEIQQKFARIDDM
Ga0316613_111873741	3300033434	Soil	MKKIIEIHGQRVELYSLDEGRTWSSNPQSIVAYGQRQETLRLEIQQ
Ga0326723_0327191_530_688	3300034090	Peat Soil	MTKQIEIHGQRVHLFSLDEGHTWSSSPQSIVAYGQRQTMLRLELQKRFERIDE
Ga0364925_0298113_430_603	3300034147	Sediment	MTKQIEIHGQRVQLSSLDEGRTWSSSPQSSVAYEQRKTMLRLELQKRFESIDGIPDPV
Ga0364935_0073250_164_316	3300034151	Sediment	MTKQIEIHGQRVELYSPDKGRTWSSSPQSIIAYGQRKTMLRLELQKGLNA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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