Metagenome / Metatranscriptome Family F066254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066254
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	59 residues
Representative Sequence	VSAVSLPIVCAWCERVRTSAGRWEDAGIVDREPAEATHGICPECLAEETRAATLALALDC
Number of Associated Samples	97
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.03 %
% of genes near scaffold ends (potentially truncated)	25.98 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.315 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (15.748 % of family members)
Environment Ontology (ENVO)	Unclassified (27.559 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.307 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.86% β-sheet: 11.36% Coil/Unstructured: 64.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00072	Response_reg	49.61
PF02518	HATPase_c	14.96
PF02954	HTH_8	14.17
PF13426	PAS_9	3.15
PF07238	PilZ	2.36
PF08448	PAS_4	0.79
PF13188	PAS_8	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.31 %
Unclassified	root	N/A	19.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.31 %
Unclassified	root	N/A	19.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.31 %
Unclassified	root	N/A	19.69 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	52.76 %
Unclassified	root	N/A	19.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.87 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.36 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	39.37 %
Unclassified	root	N/A	19.69 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.36 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.37 %
Unclassified	root	N/A	19.69 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2.36 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.37 %
Unclassified	root	N/A	19.69 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	2.36 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.37 %
Unclassified	root	N/A	19.69 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	2.36 %
Xanthomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.37 %
Unclassified	root	N/A	19.69 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	2.36 %
Xanthomonas campestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	39.37 %
Unclassified	root	N/A	19.69 %
Gemmata massiliana	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana	0.79 %
Xanthomonas campestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_105382258	Not Available	538	Open in IMG/M
3300001213\|JGIcombinedJ13530_109095789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300001431\|F14TB_100106548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Xanthomonas → Xanthomonas campestris	1314	Open in IMG/M
3300003994\|Ga0055435_10200040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300004009\|Ga0055437_10091466	Not Available	884	Open in IMG/M
3300004114\|Ga0062593_100205958	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300004155\|Ga0066600_10135892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300004157\|Ga0062590_100359524	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300004282\|Ga0066599_101627030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300004463\|Ga0063356_101959986	Not Available	885	Open in IMG/M
3300004479\|Ga0062595_101666105	Not Available	598	Open in IMG/M
3300004778\|Ga0062383_10300405	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	770	Open in IMG/M
3300005164\|Ga0066815_10034808	Not Available	775	Open in IMG/M
3300005444\|Ga0070694_100041500	All Organisms → cellular organisms → Bacteria	3070	Open in IMG/M
3300005457\|Ga0070662_101445316	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005833\|Ga0074472_11126085	All Organisms → cellular organisms → Bacteria → Acidobacteria	1155	Open in IMG/M
3300005836\|Ga0074470_11409963	All Organisms → cellular organisms → Bacteria → Acidobacteria	1770	Open in IMG/M
3300005836\|Ga0074470_11650402	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300006844\|Ga0075428_100015456	All Organisms → cellular organisms → Bacteria	8463	Open in IMG/M
3300006844\|Ga0075428_101036715	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata massiliana	868	Open in IMG/M
3300006847\|Ga0075431_101418963	Not Available	654	Open in IMG/M
3300006969\|Ga0075419_11227760	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	554	Open in IMG/M
3300009009\|Ga0105105_10821212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300009075\|Ga0105090_10089261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1929	Open in IMG/M
3300009085\|Ga0105103_10369143	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300009091\|Ga0102851_10215814	All Organisms → cellular organisms → Bacteria → Acidobacteria	1812	Open in IMG/M
3300009094\|Ga0111539_10128948	All Organisms → cellular organisms → Bacteria → Proteobacteria	2962	Open in IMG/M
3300009111\|Ga0115026_11503681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300009165\|Ga0105102_10321145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	806	Open in IMG/M
3300009167\|Ga0113563_10697069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1138	Open in IMG/M
3300009169\|Ga0105097_10145077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1305	Open in IMG/M
3300009179\|Ga0115028_10892454	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300009868\|Ga0130016_10347049	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300011107\|Ga0151490_1303802	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300011407\|Ga0137450_1087865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300011436\|Ga0137458_1180453	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300012157\|Ga0137353_1023706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300012164\|Ga0137352_1048030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300012227\|Ga0137449_1097101	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300014865\|Ga0180078_1090578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300014874\|Ga0180084_1040369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	910	Open in IMG/M
3300014885\|Ga0180063_1291464	Not Available	518	Open in IMG/M
3300014885\|Ga0180063_1309797	Not Available	500	Open in IMG/M
3300015371\|Ga0132258_10022140	All Organisms → cellular organisms → Bacteria	13905	Open in IMG/M
3300015371\|Ga0132258_13347340	All Organisms → cellular organisms → Bacteria → Proteobacteria	1102	Open in IMG/M
3300018055\|Ga0184616_10025968	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300018059\|Ga0184615_10290972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300018059\|Ga0184615_10475267	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300018081\|Ga0184625_10006550	All Organisms → cellular organisms → Bacteria → Proteobacteria	5238	Open in IMG/M
3300018083\|Ga0184628_10401686	Not Available	716	Open in IMG/M
3300021082\|Ga0210380_10220390	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300021090\|Ga0210377_10159155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1467	Open in IMG/M
3300021090\|Ga0210377_10283270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300021090\|Ga0210377_10794957	Not Available	511	Open in IMG/M
3300023102\|Ga0247754_1060193	All Organisms → cellular organisms → Bacteria → Proteobacteria	888	Open in IMG/M
3300025558\|Ga0210139_1127031	Not Available	520	Open in IMG/M
3300025569\|Ga0210073_1048478	All Organisms → cellular organisms → Bacteria → Proteobacteria	883	Open in IMG/M
3300027831\|Ga0209797_10095694	All Organisms → cellular organisms → Bacteria → Acidobacteria	1297	Open in IMG/M
3300027840\|Ga0209683_10019809	All Organisms → cellular organisms → Bacteria → Acidobacteria	2786	Open in IMG/M
3300027841\|Ga0209262_10022865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2671	Open in IMG/M
3300027885\|Ga0209450_11008464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300027887\|Ga0208980_10369351	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300027897\|Ga0209254_10028852	All Organisms → cellular organisms → Bacteria	4996	Open in IMG/M
3300027897\|Ga0209254_10605877	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300027900\|Ga0209253_10045222	All Organisms → cellular organisms → Bacteria → Proteobacteria	3663	Open in IMG/M
3300027900\|Ga0209253_10207349	All Organisms → cellular organisms → Bacteria → Acidobacteria	1561	Open in IMG/M
3300027909\|Ga0209382_10123436	All Organisms → cellular organisms → Bacteria	3019	Open in IMG/M
3300031184\|Ga0307499_10171683	Not Available	650	Open in IMG/M
3300031538\|Ga0310888_10772013	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	594	Open in IMG/M
3300031547\|Ga0310887_10277546	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300031716\|Ga0310813_10887721	Not Available	807	Open in IMG/M
3300031834\|Ga0315290_10217187	All Organisms → cellular organisms → Bacteria → Acidobacteria	1664	Open in IMG/M
3300031834\|Ga0315290_11035991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300031847\|Ga0310907_10114391	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300031873\|Ga0315297_10909376	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300031873\|Ga0315297_10933242	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300031892\|Ga0310893_10303650	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300031908\|Ga0310900_10495876	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	948	Open in IMG/M
3300031949\|Ga0214473_10578313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1243	Open in IMG/M
3300031949\|Ga0214473_11136440	Not Available	814	Open in IMG/M
3300031997\|Ga0315278_10516476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1228	Open in IMG/M
3300031997\|Ga0315278_11667060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300032000\|Ga0310903_10455174	Not Available	661	Open in IMG/M
3300032013\|Ga0310906_10402479	Not Available	904	Open in IMG/M
3300032143\|Ga0315292_10604336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300032143\|Ga0315292_10711909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300032163\|Ga0315281_10714026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1043	Open in IMG/M
3300032164\|Ga0315283_10104651	All Organisms → cellular organisms → Bacteria	2966	Open in IMG/M
3300032164\|Ga0315283_10480958	All Organisms → cellular organisms → Bacteria → Acidobacteria	1349	Open in IMG/M
3300032173\|Ga0315268_10299458	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1557	Open in IMG/M
3300032174\|Ga0307470_10622081	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300032177\|Ga0315276_11112730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	836	Open in IMG/M
3300032177\|Ga0315276_11698138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300032179\|Ga0310889_10484416	Not Available	625	Open in IMG/M
3300032211\|Ga0310896_10195642	Not Available	992	Open in IMG/M
3300032342\|Ga0315286_10790179	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300032401\|Ga0315275_10271437	All Organisms → cellular organisms → Bacteria → Acidobacteria	1896	Open in IMG/M
3300032516\|Ga0315273_11880332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300032770\|Ga0335085_10402283	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300033408\|Ga0316605_10332137	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1347	Open in IMG/M
3300033413\|Ga0316603_10725812	All Organisms → cellular organisms → Bacteria → Acidobacteria	930	Open in IMG/M
3300033413\|Ga0316603_12249447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300033414\|Ga0316619_12133396	Not Available	512	Open in IMG/M
3300033416\|Ga0316622_100043857	All Organisms → cellular organisms → Bacteria	4144	Open in IMG/M
3300033416\|Ga0316622_101174010	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300033416\|Ga0316622_101524064	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300033416\|Ga0316622_102362824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300033416\|Ga0316622_103106140	Not Available	527	Open in IMG/M
3300033418\|Ga0316625_101416687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300033418\|Ga0316625_101920212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300033418\|Ga0316625_102501381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300033480\|Ga0316620_10492800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300033482\|Ga0316627_100825579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300033482\|Ga0316627_102433500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300033482\|Ga0316627_102914919	Not Available	509	Open in IMG/M
3300033487\|Ga0316630_10088155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2038	Open in IMG/M
3300033489\|Ga0299912_10096464	All Organisms → cellular organisms → Bacteria	2591	Open in IMG/M
3300033489\|Ga0299912_10651811	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300033489\|Ga0299912_11327842	Not Available	518	Open in IMG/M
3300033513\|Ga0316628_101413907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300034115\|Ga0364945_0169188	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300034147\|Ga0364925_0041240	All Organisms → cellular organisms → Bacteria → Acidobacteria	1546	Open in IMG/M
3300034149\|Ga0364929_0051162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1253	Open in IMG/M
3300034643\|Ga0370545_093310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.34%
Host-Associated	Host-Associated	7.87%
Engineered	Engineered	0.79%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	52.76%
Terrestrial	Environmental → Terrestrial	38.58%
Plants	Host-Associated → Plants	7.87%
Wastewater	Engineered → Wastewater	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.22%
Freshwater	Environmental → Aquatic → Freshwater	33.07%
Sediment	Environmental → Aquatic → Sediment	13.39%
Marine	Environmental → Aquatic → Marine	6.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.51%
Floodplain	Environmental → Terrestrial → Floodplain	2.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.36%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.75%
Lake	Environmental → Aquatic → Freshwater → Lake	13.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.39%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.45%
Wetlands	Environmental → Aquatic → Marine → Wetlands	6.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.72%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.94%
Pond	Environmental → Aquatic → Freshwater → Pond	2.36%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.36%
Loam	Environmental → Terrestrial → Soil → Loam	1.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	13.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.39%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.15%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	3.15%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.15%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.94%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.94%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	2.36%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	15.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	13.39%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.09%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.15%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.15%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.94%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	3.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.94%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	2.36%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	2.36%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	2.36%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.36%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.36%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004155	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011436	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2	Environmental	Open in IMG/M
3300012157	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012227	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT436_2	Environmental	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300014874	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT660_2_16_10D	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025558	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027831	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027841	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Low cellulose week 11 (SPAdes)	Environmental	Open in IMG/M
3300027885	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1053822582	3300001213	Wetland	VSAVSLPIVCAWCERVRTSAGRWEDAGIVDREPAEATHGICPECLAEETRAATLALALDCR*
JGIcombinedJ13530_1083544522	3300001213	Wetland	VTTVTLPFVCAWCARTRTDGGRWESHETEDLSGTPATHGICPECLEEQTRAAALALALECQ*
JGIcombinedJ13530_1090957892	3300001213	Wetland	VSGEPLPIVCAWCERVRTASGRWEDTGVADREPEGATHGICPDCLAEETRAASLASRAVVGCP*
F14TB_1001065482	3300001431	Soil	VSASVTLPIVCAWCERVRTSAGGWAESSAPPRAEHATHGICPECLATEKRAAKAEHAMECL*
Ga0055435_102000402	3300003994	Natural And Restored Wetlands	VSAATLPIVCAWCGRVRTHPGCWEEADADPVAAEATHGICPECLATQTREAT
Ga0055437_100914662	3300004009	Natural And Restored Wetlands	VSAVNLVIVCAWCGRVRCGAERWEEARRELPADEATHGICPECLAAQTREAVAAFECQ*
Ga0062593_1002059583	3300004114	Soil	VSASVALPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAEKRAASAELAVDCL*
Ga0066600_101358922	3300004155	Freshwater	VSAVSLPIVCAWCERVRTSAGRWEDAAIADREAAEATHGICPECLAEETRAATLAPAWSSL*
Ga0062590_1003595242	3300004157	Soil	VSAFVTLPIVCAWCERVRTSAGSWEESSAPPRAEQATHGICPECLVAEKRAASAELAVDCL*
Ga0066599_1016270302	3300004282	Freshwater	VSAVHLPIVCAWCERVRTGAGRWEDAGIADREPAEATHGICPECLAEETRAAALALPLALDCR*
Ga0063356_1019599862	3300004463	Arabidopsis Thaliana Rhizosphere	VSASVALPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAELAADCL*
Ga0062595_1016661052	3300004479	Soil	VSAAVTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHAVECL*
Ga0062383_103004052	3300004778	Wetland Sediment	VSALTLPIVCAWCERVRTGAGRWEETGLADREPAEATHGICPECLAEETRAASLAPALALDIR*
Ga0066815_100348081	3300005164	Soil	VSASVTLPIVCAWCERVRTSAGGWEESSTPPRAEHATHGICPECLATEKRAAGAEHAVECL*
Ga0070694_1000415001	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SASLTLPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAELAADCL
Ga0070662_1014453162	3300005457	Corn Rhizosphere	VSASVALPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAELAADCP*
Ga0074472_111260853	3300005833	Sediment (Intertidal)	VSAVPLPIVCAWCERVRTSAGRWEETGIADREPAEATHGICPECLAEETRAATLALALHCR*
Ga0074470_114099632	3300005836	Sediment (Intertidal)	VSAEPLPIVCAWCERVRTRAGGWEDATAADQEPSGATHGICPDCLAEETRTAALARDLALDCR*
Ga0074470_116504022	3300005836	Sediment (Intertidal)	VSASVALPIVCAWCERARNGSGRWEQADVPPVPEHATHGICPDCLVDQKREATLALECPRSQLA*
Ga0075428_1000154563	3300006844	Populus Rhizosphere	VSASVTLPIVCAWCERVRTSAGGWEESTAPPRAEHATHGICPDCLATEKSAANAGQALECL*
Ga0075428_1010367152	3300006844	Populus Rhizosphere	VVSASVTLPIVCAWCERVRTSAGWEESSAPPRAEHSTHGICPECLATEKRAARTEHAIECL*
Ga0075431_1014189632	3300006847	Populus Rhizosphere	ASVTLPIVCAWCERVRTSAGGWEESTAPPRAEHATHGICPDCLATEKSAANAGQALECL*
Ga0075419_112277601	3300006969	Populus Rhizosphere	LPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHAAECL*
Ga0105105_108212122	3300009009	Freshwater Sediment	VSAAFLPFVCAWCERVRTSAGRWEEVDVSLPNPASATHGICPECLAEETRAASVEAELR*
Ga0105090_100892612	3300009075	Freshwater Sediment	VSAAFLPFVCAWCERVRTSAGRWEEVDVSLPNPASATHGICPECLAEETRAASVEAQLR*
Ga0105103_103691432	3300009085	Freshwater Sediment	VSAAFLPFVCAWCERVRTRAGRWEEVDVALADPAAATHGICPECLAEETRAASVEAELR*
Ga0102851_102158143	3300009091	Freshwater Wetlands	VSAEPLPFVCAWCARTRSEAGRWEDREAEDLSPSGATHGICPECLAEQTRAADLAVALEFR*
Ga0111539_101289483	3300009094	Populus Rhizosphere	VSASLALPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAELAADCL*
Ga0115026_115036811	3300009111	Wetland	VSTDTLTIVCAWCERVRTGAGRWEDADVADRETAEATHGICPECLAEETRAAALALALDCR*
Ga0115027_101731511	3300009131	Wetland	MLCAWCQRVRTSAGRWEEKELDNRERAEATHGICPDCLAQET
Ga0105102_103211451	3300009165	Freshwater Sediment	VSTALLPIVCAWCERVRTSAGRWEEADVPLAVPAAATHGICPECLAEETRAASVEAELR*
Ga0113563_106970691	3300009167	Freshwater Wetlands	RGRGGRRPRGDVVSTALLPIVCAWCERVRTSAGRWEDVDEPRTSPAATTHGICPECLAEQTRAAWAEAELR*
Ga0105097_101450773	3300009169	Freshwater Sediment	FVCAWCERVRTSAGRWEEVDVSLPNPASATHGICPECLAEETRAASVEAQLR*
Ga0115028_108924541	3300009179	Wetland	MSPVPLPIVCAWCERVRTGAGRWEDADVADRETAEATHGICPECLAEQTRAATLAPGLALDCR*
Ga0130016_103470491	3300009868	Wastewater	VSATPLPIVCAWCGRVRTSAGRWEDADEVELDAAEATHGICPDCLAAEQH
Ga0151490_13038022	3300011107	Soil	RRPRGEGIVSASLTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHAVECL*
Ga0137450_10878651	3300011407	Soil	VSVVALPIVCAWCERVRTSPGRWEETGIPDREPAEATHGICPECLAEETRAAALALPPALDYR*
Ga0137458_11804532	3300011436	Soil	VSALALPIVCAWCERVRTSPGRWEETGIPDREPAEATHGICPECLAEETRAAALALPPALDYR*
Ga0137353_10237062	3300012157	Soil	VSAVDLPIVCAWCDRVRTSAGRWEKPRIADRQPAEATHGICPECFAEETRAATQSLALDCG*
Ga0137352_10480301	3300012164	Soil	RGRLPPRAGVVSAVHLPIVCAWCERVRTSSGRWEEAGVAERQPAEATHGICPECFASETRAASQALALDCG*
Ga0137449_10971012	3300012227	Soil	VSAVDLPIVCAWCDRVRTSAGRWEKARIADRQPAKATHGICPECFAEETRAATQLLSLDCG*
Ga0180078_10905781	3300014865	Soil	AVDLPIVCAWCDRVRTSAGRWEEARIADRQPAEATHGICPECFASETRAATQALALDCG*
Ga0180084_10403692	3300014874	Soil	VSAVHLPIVCAWCERVRTSSGRWEEAGVAERQPAEATHGICPECFASETRAATQALALDCG*
Ga0180063_12914642	3300014885	Soil	VSAVALPIVCAWCERVRTSAGRWEDADTADREAAEATHGICPECLAEETRAAALALPPALDYR*
Ga0180063_13097972	3300014885	Soil	VSAVHLPIVCAWCDRVRTSAGRWEEDRIGDRQPAEATHGICPKCFAEETRAATQFLSLDCG*
Ga0132258_1002214013	3300015371	Arabidopsis Rhizosphere	VSASLTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHAAECL*
Ga0132258_133473401	3300015371	Arabidopsis Rhizosphere	VSASVALPIVCAWCERVRTSAGGWEESSAPPRAEQATHGICPDCLVAQKRAASAEFA
Ga0184616_100259684	3300018055	Groundwater Sediment	VSAVSLPIVCAWCERIRTSAGRWEEAGIADRQPAQATHGICPECFAEETRA
Ga0184615_102909722	3300018059	Groundwater Sediment	VSAVSLPIVCAWCERVRTGAGRWEDAGIADPKPAEATHGICPECLAEETRAAALALPLALDCR
Ga0184615_104752672	3300018059	Groundwater Sediment	VSTVHLPIVCAWCERVRTSAGRWEEAGIADRQPAEATHGICPECFAEETRAATQA
Ga0184625_100065502	3300018081	Groundwater Sediment	VSASVTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHAVEC
Ga0184628_104016862	3300018083	Groundwater Sediment	VSAEPLPIVCAWCERIRTGAGRWEETGLANREPVGATHGICPECFAEETRAASLARGLVLDCQ
Ga0210380_102203903	3300021082	Groundwater Sediment	VSASVTLPIVCAWCERVRTSAGWEESSAPPRAEHATHGICPECLATEKRAASAEHAVDCL
Ga0210377_101591553	3300021090	Groundwater Sediment	VNVVALPIVCAWCERVRTGAGCWEEADLTDREPAEATHGICPECLAEETRAATLALALNC
Ga0210377_102832702	3300021090	Groundwater Sediment	VSTVHLPIVCAWCERVRTSAGRWEEAGIADRQPAEATHGICPECFAEETRAATQALVLDC
Ga0210377_107949572	3300021090	Groundwater Sediment	MSPVPLPIVCAWCERVRTSAGRWEDADTSDREAAEATHGICPECLAEETRAAALALALDC
Ga0247754_10601931	3300023102	Soil	VSASVALPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAELAADC
Ga0210139_11270312	3300025558	Natural And Restored Wetlands	VSAVNLVIVCAWCGRVRCGAERWEEARRELPADEATHGICPECLAAQTREAVAAFECQ
Ga0210073_10484781	3300025569	Natural And Restored Wetlands	VSAVNLVIVCAWCGRVRCGAERWEEARRELPADEATHGICPECLAAQT
Ga0209797_100956943	3300027831	Wetland Sediment	VSALTLPIVCAWCERVRTGAGRWEETGLAGREPAEATHGICPECLAEETRAASLAPALALDIR
Ga0209683_100198093	3300027840	Wetland Sediment	VSALTLPIVCAWCERVRTGAGRWEETGLADREPAEATHGICPECLAEETRAASLAPALALDIR
Ga0209262_100228652	3300027841	Freshwater	VSAVSLPIVCAWCERVRTSAGRWEDAAIADREAAEATHGICPECLAEETRAATLAPAWSS
Ga0209450_110084641	3300027885	Freshwater Lake Sediment	GRLPARAGFVSAEPLPIVCAWCERIRTGTGRWDDAGSVDRGPAEATHGICPECLTEQTRAATLALALECR
Ga0208980_103693512	3300027887	Wetland	VSAVSLPIVCAWCERVRTSAGRWEDAGIVDREPAEATHGICPECLAEETRAATLALALDC
Ga0209254_100288524	3300027897	Freshwater Lake Sediment	VSAEPLPIVCAWCERIRTGTGRWDDAGSVDRGPAEATHGICPECLTEQTRAATLALALEC
Ga0209254_106058772	3300027897	Freshwater Lake Sediment	VSAVSLPIVCAWCERVRTSAGRWEDAGAADRKAAEATHGICPECLAEETRAATLAPALDW
Ga0209253_100452224	3300027900	Freshwater Lake Sediment	VSAVSLPIVCAWCERVRTGAGHWEDAANEDRELAEATHGICPECLTEQTRAATLALALEC
Ga0209253_102073491	3300027900	Freshwater Lake Sediment	VSTTHLPIVCAWCERVRTSAGRWEEAEDVELDAAEATHGICPDCLAAEQR
Ga0209382_101234362	3300027909	Populus Rhizosphere	VSASVTLPIVCAWCERVRTSAGWEESSAPPRAEHSTHGICPECLATEKRAARTEHAIECL
Ga0307499_101716832	3300031184	Soil	VSASLTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHVAEC
Ga0310888_107720131	3300031538	Soil	VSASLTLPIVCAWCERVRTSAGGWEESSVPPRAEHATHGICPECLATEKRAAGAEHAVEC
Ga0310887_102775462	3300031547	Soil	VSASLTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHAAEC
Ga0310813_108877211	3300031716	Soil	VSAFVTLPIVCAWCERVRTSAGSWEESSAPPRAEQATHGICPECLVAEKRAASAELAVDC
Ga0315290_102171873	3300031834	Sediment	VSAVSLPIVCAWCERVRTGAGRWEDAGIADRETAEATHGICPECFAEETRVATLAPALDW
Ga0315290_110359912	3300031834	Sediment	VSTVPLPIVCAWCERVRTSAGRWEEAGTADRESAQATHGICPECLTEQTHAATLALALDC
Ga0310907_101143912	3300031847	Soil	VSASVALPIVCAWCERVRTSAGGWEESSVPPRAEHATHGICPECLATEKRAAGAEHAVEC
Ga0315297_109093762	3300031873	Sediment	VSAVSLPIVCAWCERVRTGAGRWEDAGIADRETAEATHGICPECLAEETRAATLAPALDW
Ga0315297_109332422	3300031873	Sediment	MSAVSLPIVCAWCERVRTQAGRWEEPGDDTTAAPATHGICPECLVAETREAAASALAFR
Ga0310893_103036502	3300031892	Soil	VSASVTLPIVCAWCERVRTSAGGWEESSVPPRAEHATHGICPECLATEKRAAGAEHAVEC
Ga0310900_104958763	3300031908	Soil	VSASVALPIVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAEL
Ga0214473_105783133	3300031949	Soil	VSVVALPIVCAWCERVRTGAGCWEEADITDREPAEATHGICPECLAEETRAATLALALNC
Ga0214473_111364402	3300031949	Soil	MSTVALPIVCAWCERVRTVAGRWEQTDARPPADEATHGICPECLVAQKREASAALECR
Ga0315278_105164762	3300031997	Sediment	VSAVALPIVCAWCERVRTSAGRWEDAGVADREAREATHGICPECLAEQTHAATLALALDC
Ga0315278_116670602	3300031997	Sediment	VSAVALPVVCAWCERVRTGAGRWEDAGIADREAAEATHGICPECLAEETRAATLAPAQDW
Ga0310903_104551742	3300032000	Soil	VSASVALPIVCAWCERVRTSAGGWEESSVPPRAEHATHGICPECLATEKRAAGAEHA
Ga0310906_104024791	3300032013	Soil	IVCAWCERVRTSAGVWEEPSAPPRAEQATHGICPECLVAQKRAASAELAADCL
Ga0315292_106043363	3300032143	Sediment	AGFVSAEPLPIVCAWCERIRTGAGRWDDTGRVDRGSAEATHGICPECLAEQTRAATLALALECR
Ga0315292_107119092	3300032143	Sediment	VSAVALPIVCAWCERVRTSAGRWEDAGVADREAREATHGICPECLAEQTRAATLALPLALDCR
Ga0315281_107140262	3300032163	Sediment	VSAVALPIVCAWCERVHTSAGRWEEAGIADREAREATHGICPECLTEQTHAATLALALDC
Ga0315283_101046512	3300032164	Sediment	VSAEPLPIVCAWCERIRTGAGRWDDTGRVDRGSAEATHGICPECLAEQTRAATLALALEC
Ga0315283_104809583	3300032164	Sediment	VSAVSLPIVCAWCERVRTGAGRWEDAGIADREAAEATHGICLECLAEETRAATLAPALDW
Ga0315268_102994583	3300032173	Sediment	VSAVALPIVCAWCERVRTSAGRWEDAGVADREAREATHGICPECLAEQTHAATLAPALDC
Ga0307470_106220812	3300032174	Hardwood Forest Soil	VSASVTLPIVCAWCERVRTSAGWEESSAPPRAGHATHGICPECLATEKRAANAEHAVDCR
Ga0315276_111127302	3300032177	Sediment	VSAVPLPIVCAWCERVRTSAGRWEETGTADRESAQATHGICPECLTEQTHAATLALALDC
Ga0315276_116981382	3300032177	Sediment	VSAVALPIVCAWCERVRTSAGRWEEAGIADREAREATHGICPECLTEQTHAATLALALDC
Ga0310889_104844162	3300032179	Soil	VSASVTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICPECLATEKRAAGAEHA
Ga0310896_101956422	3300032211	Soil	VSASVTLPIVCAWCERVRTSAGGWEESSVPPRAEHATHGICPECLATEKRAAGAEHAAEC
Ga0315286_107901792	3300032342	Sediment	VSAVALPIVCAWCERVHTSAGRWEEAGIADREAREATHGICPECLAEQTHAATLAPALDC
Ga0315275_102714372	3300032401	Sediment	VSAVSLPIVCAWCERVRTGAGRWEDAGIADREAAEATHGICPECLAEETRAATLAPALDW
Ga0315273_118803322	3300032516	Sediment	VSTVPLPIVCAWCERVRTSAGRWEEAGTADRESAQATHGICPECLTEQTH
Ga0335085_104022831	3300032770	Soil	VSARTLPTVCAWCERVRTTAGRWESADGPAPDASESTHGICPDCLAEVQHAA
Ga0316605_103321373	3300033408	Soil	VSAAFLPFVCAWCERVRTRAGRWEEVDVTLADPAAATHGICPECLAEETRAASVEAELR
Ga0316603_107258122	3300033413	Soil	MSPVPLPIVCAWCERVRTGAGRWEDADVADRETAEATHGICPECLAEETRAAALALALDC
Ga0316603_116695652	3300033413	Soil	VSAEPLPFVCAWCARTRSEAGRWEDREAEDLSPSGATHGICPECLAEQTRAADLAVALEL
Ga0316603_122494472	3300033413	Soil	VSAVRLPIVCAWCERVRTGAGRWEDAAIADRELAEATHGICPECLAEETRAAALALPLALDCR
Ga0316619_121333962	3300033414	Soil	VSVATLPTVCAWCERVRTSSGRWEEVGAGERDSDLATHGICPDCLAQETRAAAV
Ga0316622_1000438573	3300033416	Soil	VSAEPLPFVCAWCARTRSEAGRWEDREAEDLSPSGATHGICPECLAEQTRAADLAVALEF
Ga0316622_1011740101	3300033416	Soil	VSATPLPIVCAWCDRIRTGTGRWEERETAERGDPEATHGICPDCLAEE
Ga0316622_1015240643	3300033416	Soil	AWCARVRSDTGLWEHREGAGRAPVDASHGICPDCLAEQTRAAVLLALECR
Ga0316622_1023628241	3300033416	Soil	VSADPLPFVCAWCARVRSEAGRWEDGEGTDLTTVEATHGICPECLAEQTRAATLLALECR
Ga0316622_1031061402	3300033416	Soil	VSTAHLPIVCAWCERVRTSAGRWEESDDLGCDAAEATHGICPDCLAAEQHAAIL
Ga0316625_1014166871	3300033418	Soil	VSAVPLPIVCAWCERVRAGSGRWEAADVADREPAEATHGICPECLAEQ
Ga0316625_1019202122	3300033418	Soil	VSAAFLPFVCAWCDRVRTSAGRWEEVDVSLPDPAAATHGICPECLAEETRAAS
Ga0316625_1025013811	3300033418	Soil	FVCAWCDRVRTSAGRWEEVDVSLPDPAAATHGICPECLAEETRAASVEGELR
Ga0316620_104928002	3300033480	Soil	VSTTSLPIVCAWCGRVRTSAGRWEEPDSVERDSDEATHGICPDCLAAEKRAASLAVECQ
Ga0316627_1008255792	3300033482	Soil	VSTVTLPIVCAWCERVRTSAGRWEETDIAHREAGEATHGICPECLAQETRAAAVALALDC
Ga0316627_1024335002	3300033482	Soil	IVCAWCDRVRTSAGRWEDGDEPPERPSAATHGICPDCLAEQTRAAWAEAELR
Ga0316627_1029149192	3300033482	Soil	VSSLTLPIVCAWCDRVRTSGGRWEEAGLADREAAEATHGICPECLAEETRAAALALALDC
Ga0316630_100881552	3300033487	Soil	VSTVTLPIVCAWCERVRAGSGRWEAADFADREPAEATHGICPECLAEQTRAATLAPGLALDCR
Ga0299912_100964643	3300033489	Soil	VSTTHLPIVCAWCERVRTSAGRWEEAEDVELDAAEATHGICPDCLAAEQRAAILAVECR
Ga0299912_106518112	3300033489	Soil	VSAVSLPIVCAWCERVRTSAGRWEDAGIVDRELAEATHGICPECLAEETRAATLSLALDC
Ga0299912_113278422	3300033489	Soil	VSTVTLPIVCAWCERVRTSAGRWEETDIAHRETGEATHGICPECLAQETRAAAAALALDC
Ga0316628_1014139072	3300033513	Soil	VSTTSLPIVCAWCGRVRTSAGRWEEPDSVERDSDEATHGICPDCLTAEKRAASLAVECQ
Ga0364945_0169188_174_359	3300034115	Sediment	VSASVTLPIVCAWCERVRTSAGGWEESSAPPRAEHATHGICSECLATEKRAAGAEHAVEC
Ga0364925_0041240_102_287	3300034147	Sediment	VSAVDLPIVCAWCDRVRTSAGRWEKARIADRQPAKATHGICPECFAEETRAATQLLSLDC
Ga0364929_0051162_617_808	3300034149	Sediment	MSAEPLPIVCAWCERIRTGAGRWEETGLANREPVGATHGICPECFAEETRAASLARGLVLDCQ
Ga0370545_093310_375_566	3300034643	Soil	MSAEPLPIVCAWCERIRTGAGRWEETGLANREPVGATHGICPECLAEETRAASLARGLVLDCQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences