Metagenome / Metatranscriptome Family F066251

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066251
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	90 residues
Representative Sequence	MDRDLVGQLVRLKLKDNRLPNGRAVGIREIGTFSSDGRWCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALAEKNGDSRDGQ
Number of Associated Samples	93
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	35.48 %
% of genes near scaffold ends (potentially truncated)	27.56 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.480 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.260 % of family members)
Environment Ontology (ENVO)	Unclassified (38.583 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (60.630 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.93% β-sheet: 19.01% Coil/Unstructured: 52.07%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
a.93.1.1: Heme-dependent peroxidases	d2vcna_	2vcn	0.55
a.93.1.1: Heme-dependent peroxidases	d2vcna_	2vcn	0.55
a.70.2.0: AF1862-like	d4gkfa_	4gkf	0.54
a.70.2.0: AF1862-like	d4gkfa_	4gkf	0.54
d.336.1.1: YbiA-like	d2b3wa1	2b3w	0.53
a.104.1.0: Cytochrome P450	d2jjna_	2jjn	0.53
a.104.1.0: Cytochrome P450	d2xkra_	2xkr	0.53
d.336.1.1: YbiA-like	d2b3wa1	2b3w	0.53
a.104.1.0: Cytochrome P450	d2jjna_	2jjn	0.53
a.104.1.0: Cytochrome P450	d2xkra_	2xkr	0.53

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00106	adh_short	4.72
PF06262	Zincin_1	3.94
PF01381	HTH_3	3.15
PF13561	adh_short_C2	2.36
PF01042	Ribonuc_L-PSP	2.36
PF04392	ABC_sub_bind	1.57
PF07690	MFS_1	1.57
PF02401	LYTB	1.57
PF13495	Phage_int_SAM_4	0.79
PF00009	GTP_EFTU	0.79
PF13560	HTH_31	0.79
PF00158	Sigma54_activat	0.79
PF04909	Amidohydro_2	0.79
PF00296	Bac_luciferase	0.79
PF12367	PFO_beta_C	0.79
PF08450	SGL	0.79
PF05199	GMC_oxred_C	0.79
PF13091	PLDc_2	0.79
PF07603	DUF1566	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	3.94
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	3.15
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	2.36
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.57
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.79
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.79
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.79
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.27 %
Unclassified	root	N/A	41.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.48 %
Unclassified	root	N/A	41.73 %
Viruses	superkingdom	All Organisms → Viruses	0.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.48 %
Unclassified	root	N/A	41.73 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	31.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.51 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	31.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.36 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	31.50 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	29.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.73 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	29.13 %
Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_22	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_22	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1186586	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	989	Open in IMG/M
3300000787\|JGI11643J11755_11688778	Not Available	541	Open in IMG/M
3300000789\|JGI1027J11758_13069259	Not Available	812	Open in IMG/M
3300000955\|JGI1027J12803_104708818	Not Available	956	Open in IMG/M
3300001431\|F14TB_100451568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1171	Open in IMG/M
3300004479\|Ga0062595_102260437	Not Available	535	Open in IMG/M
3300005093\|Ga0062594_102497264	Not Available	567	Open in IMG/M
3300005167\|Ga0066672_10425689	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	868	Open in IMG/M
3300005186\|Ga0066676_10554478	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	779	Open in IMG/M
3300005289\|Ga0065704_10049977	Not Available	651	Open in IMG/M
3300005295\|Ga0065707_10058259	Not Available	710	Open in IMG/M
3300005295\|Ga0065707_10204211	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300005295\|Ga0065707_10669838	Not Available	654	Open in IMG/M
3300005295\|Ga0065707_10857057	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	580	Open in IMG/M
3300005332\|Ga0066388_103938119	Not Available	757	Open in IMG/M
3300005336\|Ga0070680_101297982	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300005353\|Ga0070669_101782008	Not Available	537	Open in IMG/M
3300005459\|Ga0068867_100677777	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300005526\|Ga0073909_10032229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1802	Open in IMG/M
3300005546\|Ga0070696_101069631	Not Available	677	Open in IMG/M
3300005713\|Ga0066905_100637336	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300005764\|Ga0066903_100668834	All Organisms → cellular organisms → Bacteria → Proteobacteria	1821	Open in IMG/M
3300005844\|Ga0068862_102095158	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	577	Open in IMG/M
3300006049\|Ga0075417_10753065	Not Available	503	Open in IMG/M
3300006058\|Ga0075432_10254499	Not Available	714	Open in IMG/M
3300006847\|Ga0075431_100524438	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300006852\|Ga0075433_10068704	All Organisms → cellular organisms → Bacteria → Proteobacteria	3111	Open in IMG/M
3300006854\|Ga0075425_100672256	Not Available	1190	Open in IMG/M
3300006854\|Ga0075425_101016282	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300006871\|Ga0075434_101462756	Not Available	693	Open in IMG/M
3300006871\|Ga0075434_101490558	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300006871\|Ga0075434_102463705	Not Available	522	Open in IMG/M
3300006881\|Ga0068865_100460568	Not Available	1053	Open in IMG/M
3300006903\|Ga0075426_11295806	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300006904\|Ga0075424_100682789	Not Available	1097	Open in IMG/M
3300007076\|Ga0075435_101804790	Not Available	537	Open in IMG/M
3300007255\|Ga0099791_10190407	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	965	Open in IMG/M
3300007255\|Ga0099791_10364411	Not Available	693	Open in IMG/M
3300007265\|Ga0099794_10511740	Not Available	632	Open in IMG/M
3300009094\|Ga0111539_12896548	Not Available	555	Open in IMG/M
3300009100\|Ga0075418_10022604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6910	Open in IMG/M
3300009100\|Ga0075418_10381300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1507	Open in IMG/M
3300009100\|Ga0075418_10542419	All Organisms → cellular organisms → Bacteria → Proteobacteria	1250	Open in IMG/M
3300009147\|Ga0114129_11367186	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	875	Open in IMG/M
3300009156\|Ga0111538_10445758	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1641	Open in IMG/M
3300009156\|Ga0111538_14129417	Not Available	501	Open in IMG/M
3300009162\|Ga0075423_10097541	All Organisms → cellular organisms → Bacteria	3073	Open in IMG/M
3300010359\|Ga0126376_10095462	All Organisms → cellular organisms → Bacteria	2252	Open in IMG/M
3300010362\|Ga0126377_10629200	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium RIFCSPLOWO2_12_FULL_71_22	1120	Open in IMG/M
3300010375\|Ga0105239_12869384	Not Available	562	Open in IMG/M
3300012198\|Ga0137364_10832766	Not Available	697	Open in IMG/M
3300012200\|Ga0137382_10302304	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1116	Open in IMG/M
3300012202\|Ga0137363_10399001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1145	Open in IMG/M
3300012203\|Ga0137399_10211952	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300012207\|Ga0137381_10677462	Not Available	897	Open in IMG/M
3300012209\|Ga0137379_10491352	Not Available	1135	Open in IMG/M
3300012210\|Ga0137378_10297543	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300012211\|Ga0137377_11691687	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300012285\|Ga0137370_10214960	Not Available	1131	Open in IMG/M
3300012361\|Ga0137360_11823358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300012582\|Ga0137358_10099352	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1970	Open in IMG/M
3300012582\|Ga0137358_10714961	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	670	Open in IMG/M
3300012582\|Ga0137358_11007952	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300012685\|Ga0137397_10399169	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300012685\|Ga0137397_10563785	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	848	Open in IMG/M
3300012685\|Ga0137397_10876772	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300012917\|Ga0137395_10465479	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	909	Open in IMG/M
3300012918\|Ga0137396_10088038	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300012923\|Ga0137359_10861514	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	783	Open in IMG/M
3300012925\|Ga0137419_10042539	All Organisms → cellular organisms → Bacteria	2876	Open in IMG/M
3300012927\|Ga0137416_10498677	All Organisms → Viruses → Predicted Viral	1048	Open in IMG/M
3300012927\|Ga0137416_12010921	Not Available	530	Open in IMG/M
3300012948\|Ga0126375_10776176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	756	Open in IMG/M
3300012960\|Ga0164301_10576144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	826	Open in IMG/M
3300012961\|Ga0164302_10851354	Not Available	694	Open in IMG/M
3300012971\|Ga0126369_10481327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1296	Open in IMG/M
3300013297\|Ga0157378_10161746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2094	Open in IMG/M
3300013306\|Ga0163162_10628679	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1198	Open in IMG/M
3300013306\|Ga0163162_11068502	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	914	Open in IMG/M
3300015371\|Ga0132258_10322540	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3808	Open in IMG/M
3300015371\|Ga0132258_11469874	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300015372\|Ga0132256_100233088	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300015373\|Ga0132257_102312940	Not Available	697	Open in IMG/M
3300015374\|Ga0132255_106176861	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300017792\|Ga0163161_10857602	Not Available	767	Open in IMG/M
3300017792\|Ga0163161_12051044	Not Available	509	Open in IMG/M
3300025899\|Ga0207642_11139375	Not Available	505	Open in IMG/M
3300026089\|Ga0207648_10765642	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300026089\|Ga0207648_11858063	Not Available	564	Open in IMG/M
3300027873\|Ga0209814_10565664	Not Available	506	Open in IMG/M
3300027903\|Ga0209488_11025396	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300027907\|Ga0207428_10028476	All Organisms → cellular organisms → Bacteria	4642	Open in IMG/M
3300027909\|Ga0209382_10233162	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300028589\|Ga0247818_10799213	Not Available	658	Open in IMG/M
3300031198\|Ga0307500_10151102	Not Available	663	Open in IMG/M
3300031226\|Ga0307497_10058278	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1381	Open in IMG/M
3300031547\|Ga0310887_11143180	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031720\|Ga0307469_10143353	Not Available	1774	Open in IMG/M
3300031720\|Ga0307469_10326862	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300031720\|Ga0307469_10527457	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1041	Open in IMG/M
3300031720\|Ga0307469_10984291	Not Available	786	Open in IMG/M
3300031720\|Ga0307469_11423653	Not Available	662	Open in IMG/M
3300031740\|Ga0307468_100748380	Not Available	825	Open in IMG/M
3300031740\|Ga0307468_100963287	Not Available	746	Open in IMG/M
3300031740\|Ga0307468_101384141	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	645	Open in IMG/M
3300031740\|Ga0307468_102290816	Not Available	524	Open in IMG/M
3300031820\|Ga0307473_11118717	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300031847\|Ga0310907_10148875	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300031854\|Ga0310904_10020011	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2928	Open in IMG/M
3300031908\|Ga0310900_10671976	Not Available	826	Open in IMG/M
3300031908\|Ga0310900_11623471	Not Available	547	Open in IMG/M
3300032000\|Ga0310903_10023129	All Organisms → cellular organisms → Bacteria → Proteobacteria	2132	Open in IMG/M
3300032003\|Ga0310897_10147651	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	985	Open in IMG/M
3300032075\|Ga0310890_11676102	Not Available	527	Open in IMG/M
3300032174\|Ga0307470_10013859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3437	Open in IMG/M
3300032179\|Ga0310889_10293321	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300032179\|Ga0310889_10392450	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	687	Open in IMG/M
3300032180\|Ga0307471_100187040	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2052	Open in IMG/M
3300032180\|Ga0307471_100247388	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300032205\|Ga0307472_100339729	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1227	Open in IMG/M
3300032205\|Ga0307472_102551580	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	520	Open in IMG/M
3300032205\|Ga0307472_102675681	Not Available	509	Open in IMG/M
3300034663\|Ga0314784_149669	Not Available	528	Open in IMG/M
3300034664\|Ga0314786_067304	Not Available	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.35%
Host-Associated	Host-Associated	34.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.35%
Plants	Host-Associated → Plants	34.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.81%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.87%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.57%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	12.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.15%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	3.15%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_11865862	2228664022	Soil	VDKAFVQELVRLRLKDKRLPEGRAVAIRETFGDGQQCDACDAAIVPSQKTVLAMVSLEWMSIRFHVDCYKVWDVERLAFSEKNGNGRDDQ
JGI11643J11755_116887781	3300000787	Soil	MDTTLIQELVRRRLKDGRLPQGRAVGIREIGIFSSAGRRCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDAE
JGI1027J11758_130692591	3300000789	Soil	MDRDLVQQLIRLKFNDNRLPRDPAVGIHEMGRLSSNGRQGAACDEGISANQKAMLVMVSQEWMSLFFHADCYEMWDAERLC*
JGI1027J12803_1047088182	3300000955	Soil	VDRAFVQEVVRLKLNDKRLPDGRAVAIREFGRFSADGRQCDACGERIGLNQTAVLVMVSLEWMSVFFHTDCYTVWDVERLAFSEKNGDKG*
F14TB_1004515682	3300001431	Soil	MDTTLIQELVRRRLKDGRLPLGRAVGIPEIGRFSSAGRQCDACDERIGPNQKAVLVMVSREWRSVFFHDDCYKVWDAER
Ga0062595_1022604371	3300004479	Soil	MDRDLLHELVRFKLKDNRLPRSGAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL*
Ga0062594_1024972641	3300005093	Soil	MDRDLVQQLIRLKLNDNRLPRDPAVGIREMGRLSSNGRQCAACDEGIGANQKAMLVMVSQEWMSLFFHADCYEMWDAERLL*
Ga0066672_104256892	3300005167	Soil	MDKALIQQLVRRRLKDRRLPDGRAVGIRETFGDGQPCDACDKPIRPKQQAVVAMVSREWMSVRFHVDCYTVWDVERLALSEKNGDRRGGQ*
Ga0066676_105544781	3300005186	Soil	MDKAFVQELIRLRFKDKRLPEGRAVAIRETFGDGRQCDACDGPIERKQKVVLVMVSLEWMSVRFHVDCYQVWEAERLALSEQDGDDRAEQS*
Ga0065704_100499771	3300005289	Switchgrass Rhizosphere	MDRDLLHELVRFKLKDNRLPRSRAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL*
Ga0065707_100582591	3300005295	Switchgrass Rhizosphere	MDRDHLQELIRFKLKDNRLPRDPAVGIRETGRLSSDGRRCNACDQGISPNQKAVLVMVSREWMSVFFHADCYEVWDAERLALADQDRDARGGSVTTESR*
Ga0065707_102042114	3300005295	Switchgrass Rhizosphere	MDTALIRELVRRRLKDGRLPHGRAVAIREIGRFSCGPQCGRQCDACDERIGPNQQALMVMVSLLWMSVFFHADCYKVWDAERVALFEGDGEGD*
Ga0065707_106698381	3300005295	Switchgrass Rhizosphere	MDTTLIQELVRRRLKDGRLPLGRAVGIPEIGRFSSAGRQCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDAERLALFEKDGDGRGGH*
Ga0065707_108570572	3300005295	Switchgrass Rhizosphere	VDKAFVQELVRLRLKDKRLPEGRAVAIRETFGDGQQCDACDAAIVPSQKTVLAMVSLEWMSIRFHVDCYKVWDVERLAFSEKNGNGRDDQ*
Ga0066388_1039381192	3300005332	Tropical Forest Soil	MDRDLIQELVRFKLKNNRLPHGSAVGIRETGRLSGNGRRCDACEEEIRANQKAVLVMVSLEWMSVFFHADCYEVWDAEWLALAGQDRDELSSSSTPSLDT*
Ga0070680_1012979822	3300005336	Corn Rhizosphere	MDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDGDGTRPSPWTSVGDPPSA*
Ga0070669_1017820082	3300005353	Switchgrass Rhizosphere	SVADRSRMDRDFVGQLVRLKLADNRLPHGRAVAIRETGTFSSAGRHCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALSERISDGQS*
Ga0068867_1006777772	3300005459	Miscanthus Rhizosphere	MDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDGEGTRPSPWTSVGDPPSA*
Ga0073909_100322291	3300005526	Surface Soil	MDRGFVGRLVRLKLADNRLPHGRAVAIRETGTFSSDGRRCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALSERNGDG*
Ga0070696_1010696313	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERIGPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLA
Ga0066905_1006373361	3300005713	Tropical Forest Soil	MDRDLIQELVRFKLKNNRLPHGSAVGIRETGRLSGNGRRCDACEEEIRANQKAVLVMVSLEWMSVFFHADCYEVWDAEWLALAGQDRDELSSSSTRSLDT*
Ga0066903_1006688342	3300005764	Tropical Forest Soil	MLVNGRPMDRDLIQELVRLKLKTNRLPHGSAVGIRETGRLSSNGRHCDACEEGISPNQKAVLVMVSLERMSVFFHADCYEVWEAERLALADQDLDDFSSSSTPSLDT*
Ga0068862_1020951582	3300005844	Switchgrass Rhizosphere	HELVRFKLKDNRLPRSGAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL*
Ga0075417_107530651	3300006049	Populus Rhizosphere	PHPIRRCSSTAPMDRDLLHELVRFKLKDNRLPSSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL*
Ga0075432_102544992	3300006058	Populus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSRAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLAFADQDRDVQGGSVTTESL*
Ga0075431_1005244382	3300006847	Populus Rhizosphere	MDRDVLHELVRFKLKDNRLPSSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL*
Ga0075433_100687042	3300006852	Populus Rhizosphere	MDRDVLHELVRFKLKDNRLPRSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL*
Ga0075425_1006722562	3300006854	Populus Rhizosphere	VDRAFVQELVRLKLKDKRLPEGRAVAIREFGRFSADGRQCDACDERIGPNQTAALVMVSLEWMSVFFHVDCYEVWDAERLALSEKTSDRQS*
Ga0075425_1010162822	3300006854	Populus Rhizosphere	MDRDVLHELVRFKLKDNRLPRSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDAQGGSVTTESL*
Ga0075434_1014627563	3300006871	Populus Rhizosphere	MDRDLVGQLVRLKLKDNRLPNGRAVGIREIGTFSSDGRWCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALAEKNGDSRDGQ*
Ga0075434_1014905582	3300006871	Populus Rhizosphere	MDRDVLHELVRFKLKDNRLARSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDAQGGSVTTESL*
Ga0075434_1024637052	3300006871	Populus Rhizosphere	MDTTLIQELVRRRLKDGRLPLGRAVGIPEIGRFSSAGRQCDACDERIGPNQTAALVMVSLEWMSVFFHVDCYEVWDAERLALSEKTSDRQS*
Ga0068865_1004605682	3300006881	Miscanthus Rhizosphere	MDRGFVGRLVRLKLADNRLPHGRAVAIRETGTFSSDGRRCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALSERISDGQS*
Ga0075426_112958061	3300006903	Populus Rhizosphere	PPGRAVGIPETHGDGQPCDACGEPIGPNQQAVLVMVSLQWMSVFFHTDCYEVWDAERLALSEKNGADRPSQ*
Ga0075424_1006827893	3300006904	Populus Rhizosphere	VDRAFVQELVRLKLKDKRLPEGRAVAIREFGRFSADGRQCDACDERIGPNQTAVLVMVSLEWMSVFFHVDCYKMWDVERLALAEKDDARPT*
Ga0075435_1018047902	3300007076	Populus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSRAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDAQGGSVTTESL*
Ga0099791_101904073	3300007255	Vadose Zone Soil	ALYDDRYMDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDAERLALFEKDGDGRGGQ*
Ga0099791_103644111	3300007255	Vadose Zone Soil	MDPTLIRELVRRRLKDGRLPQGRVVCIREIGRFSSAGRQCDACDERIGPNQKAVLLMVSLQWMSVFFHDDCYKVWDAERLGPL*
Ga0099794_105117401	3300007265	Vadose Zone Soil	LPERRALGIRETFGDGQQCNACDEPIGPKQKAVLATVSLEWMSVRFHVDCYKVWDAERLARSMMTPPS*
Ga0111539_128965481	3300009094	Populus Rhizosphere	MDTDSVQALVRLKLKANRLPHGPAVALRETGRFATNARHCDACDEGIGPYRQAVLVMVSLEWLSVFFHVDCYEVWDAERLALAKKNSDGRDGQSTTT*
Ga0075418_100226041	3300009100	Populus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSRAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEV
Ga0075418_103813001	3300009100	Populus Rhizosphere	MDTDSVQALVRLKLKANRLPHGPAVALRETGRYATNARHCDACDEGIGPSRQAVLVMVSLEWLSVFFHVDCYEVWDAERLALAKKNSDGRDGQSTTT*
Ga0075418_105424193	3300009100	Populus Rhizosphere	MDHDLVSQLVRLKLKTHRLPERAAVGIREFGGFSSGGRQCDACDERIGANQQAVLVMVSLEWMSVFFHVDCYEVWDAERLALAKKNSDGRDGQSTTT*
Ga0075418_122400121	3300009100	Populus Rhizosphere	MDRDVLHELVRFKLKDNRLPSSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEV
Ga0114129_113671862	3300009147	Populus Rhizosphere	MDTTLIQELVRRRLKDGRLPLGRAVGIPEIGRFSSAGRQCDACDERIGPNQKAVLVMVSREWRSVFFHDDCYKVWDAERLALFEKDGDGR
Ga0111538_104457584	3300009156	Populus Rhizosphere	MDPDLVREQVRLKLRDRRLPQGRAVGIREIGSFSNDGRQCDACDERIGPNQKAVLVMVSREWRSVFFHDDCYKVWDAERLALAKKNSDGRDGQSTTT*
Ga0111538_141294171	3300009156	Populus Rhizosphere	MDRDLIQNLVRLKLKGHRLPEDRPIGFRETSGDGRPCDACGEPISPKQRSVLMMVSLEWMSVHFHVDCYKVWDAERHALSGKDSDDAGGRMTTPLST*
Ga0075423_100975413	3300009162	Populus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSRAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDVERLALADQDRDAQGGSVTTESL*
Ga0126376_100954623	3300010359	Tropical Forest Soil	MDRDLIQELVRFKLKNNRLPHGSAVGIRETGRLSGNGRRCDACEEEIRANQKAVLVMVSLEWMSVFFHADCYEVWDAEWLALAGQDRDEVSSSSTPSLDT*
Ga0126377_106292002	3300010362	Tropical Forest Soil	MDRDLIQELVRFKLKNNRLPHGSAVGIRETGRLSGNGRRCDACEEEIRANQKAVLVMVSLEVWDAEWLALAGQDRDELSSSSTPSLDT*
Ga0105239_128693841	3300010375	Corn Rhizosphere	MDRDLVQQLIRLKLNDNRLPRDPAVGIREMGRLSSNGRQCDACDEGIGANQKAMLVMVSQEWMSLFFHADCYEMWDAERLL*
Ga0137364_108327661	3300012198	Vadose Zone Soil	MDTALIQELVRRRLKDGRLPHGRAVAIRETGRFSSERQCDACDERIGPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDAEGTRPSPWTSVGDPPSA*
Ga0137382_103023041	3300012200	Vadose Zone Soil	EGRAVDLRETTGDGRPCDACGEPIDPKQRAVLAMVSREWMSVRFHVDCYKVWDAERLALSEMNGNGRSSQ*
Ga0137363_103990012	3300012202	Vadose Zone Soil	MDTTLIQELVRRRLKDGRLPQGRAVVIREIGRTSSAGRQCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDAERLALFEKDGDGRGGQ*
Ga0137399_102119524	3300012203	Vadose Zone Soil	MDTNLVQALVRRRLKDRRLPERCALGMRETFGDGQQCNACDEPISPKQKAVLATVLLEWMSVRFHVDCYKVWDAERLARAMMTPPS*
Ga0137381_106774622	3300012207	Vadose Zone Soil	MDTALIQELVRRRLKDGRLPHGRAVAIRETGRFSSERQCDACDERIGPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDGEGTRPSPWTSLGDPPSA*
Ga0137379_104913521	3300012209	Vadose Zone Soil	MDTALVQELVRRRLKDGRLPQGRAVAIREIGRFSSERQCDACDERIGPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDAEGTRPSPWTSVGDPPSA*
Ga0137378_102975434	3300012210	Vadose Zone Soil	MDRDLVQELVRLRLKDNRLPEGHAVGLRETTGNGRPCDACGEPIDRKQRAVLAMVSREWMSVRFHVDCYKVWDAERLALSEMNGAGRRSQ*
Ga0137378_105544891	3300012210	Vadose Zone Soil	MDTALIQELVRRRLKDGRLPHGRAVAIRETGRFSSERQCDACDERIGPNQKAVMVMVSLQWMSVFFHDDCYK
Ga0137377_116916873	3300012211	Vadose Zone Soil	LRLKDNRLPEGHAVGLRETTGNGRPCDACGEPIGRKQRAVLAMVSREWMSVRFHVDCYKVWDAERLALSEMNGHGRPSQ*
Ga0137370_102149601	3300012285	Vadose Zone Soil	MDTALVQELVRRRLKDGRLPHGRAVAIRETGRFSSERQCDACDERIGPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDAEGTRPSPWTSVGDPPSA*
Ga0137360_118233581	3300012361	Vadose Zone Soil	ELVRRRLKDGRLPQGRAVVIREIGRTSSAGRQCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDAERLALFEKDGDGRGGQ*
Ga0137358_100993522	3300012582	Vadose Zone Soil	MDKNLVQELVRRRLKDRGLPERRALDIRETFGDGQQCNACDEPIGPKQKAVLATVSLEWMSVRFHVDCYKVWDAERLARSMMTPPSLSVLHESG*
Ga0137358_107149613	3300012582	Vadose Zone Soil	MDRDLVQELVRLRLKDNRLPEGHAVGLRETTGNGRPCDACGEPIDPKQRAVLAMVSLEWMSVRFHVDCYKVWDAERLALSEMNGHGR
Ga0137358_110079522	3300012582	Vadose Zone Soil	MDTTLIQELVRRRLKDGRLPQGRAVVIREIGRTSSAGRQCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDDERLALFEKDGDGRGGQ*
Ga0137397_103991693	3300012685	Vadose Zone Soil	MDTGLVQQLVRLKLRDGRLPQGRAVGIRETGTFSSDGRRCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYAVWAAERLALSEKDGNGRG*
Ga0137397_105637851	3300012685	Vadose Zone Soil	MDQGLVQELVRLRLKNRRLPERGALRLRETFGDGQQCNACDEPIGPKQKAVLATVSLEWMSVRFHVDCYKVWDAERLVLSEKNGNGRAAVNDDSRR*
Ga0137397_108767723	3300012685	Vadose Zone Soil	MDRDLVQELVRLRLKDNRLPEGHAVGLRETTGNGRPCDACGEPIDRKQRAVLAMVSREWMSVRFHVDCYKVWDAERLALSEMNGH
Ga0137395_104654793	3300012917	Vadose Zone Soil	MDRDLVQELVRLRLKDNRLPEGRAVGLRETTGNGRPCDACGEPIDPKQRAVLAMVSREWMSVRFHVDCYKVWDAERLALSEMNGDGRRSQ*
Ga0137396_100880386	3300012918	Vadose Zone Soil	MDTNLVQALVRRRLKDRRLPERCALGMRETFGDGQQCNACDEPIGPKQKAVLATVSLEWMSVRFHVDCYKVWDAERLARSMMTPPS*
Ga0137359_108615142	3300012923	Vadose Zone Soil	MDTTLIQELVRRRLKDGRLPQGRAVVIREIGRTSSAGRQCDACDERIGPNQKAVLVMVSREWMSVFFHDDCYKVWDAERLALFEKDGDGRGGK*
Ga0137419_100425393	3300012925	Vadose Zone Soil	MDTNLVQALVRRRLKDRRLPERRALGIRETFGDGQQCNACDEPIGPKQKAVLATVSLEWMSVRFHVDCYKVWDAERLARSMMTPPS*
Ga0137416_104986771	3300012927	Vadose Zone Soil	MDKNLVQALVRRRLKDRRWPERRALGMRETFGDGQQCNACDEPISPKQKAVLATVLLEWMSVRFHVDCYKVWDAERLARSMMTPPS*
Ga0137416_120109211	3300012927	Vadose Zone Soil	VAGVQELVRRGLKDRRLPEGRAVGIRETAGDGQPCNACDQPIGPKQKAVLAMVSLEWMSVRFHVDC*
Ga0126375_107761761	3300012948	Tropical Forest Soil	MDRDLIQELVRFKLKNNRLPHGSAIGLREMGRLSSNGRHCDACEEGIRPNQKAVMVSVEWMSVFFHADCYEVWDAEWLALAGQDRDEVSSSSTPSLDT*
Ga0164301_105761441	3300012960	Soil	LVRLKLKDKRLPDGRAVAIRAIFGDGRQCDACDEPIRPQQNAMLAMVSLEWISARFHVDCYKVWDAERLALSEKNDS*
Ga0164302_108513543	3300012961	Soil	LVRLKLKDKRLPAGRAVAIREIFGDGRQCDACDERIGPNQKAVLVMVSLQWMSVFFHVDCYEVWDAERLAFPEKKNGDSRG
Ga0126369_104813272	3300012971	Tropical Forest Soil	MDRDLIQELVRLKLKNNRLPHGSAVGIRETGRLSSNGRHCDACEEGISPNQKAVLVMVSLERMSVFFHADCYEVWEAERLALADQDLDDFSSSSTPSLDT*
Ga0157378_101617462	3300013297	Miscanthus Rhizosphere	MDRGFVGRLVRLKLADNRLPHGRAVAIRETGTFSSDGRRCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLELAERISYGQS*
Ga0157378_131254571	3300013297	Miscanthus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSGAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEV
Ga0163162_106286792	3300013306	Switchgrass Rhizosphere	MDRDFVWQLVRLKLADNRLPHGRAVAIRETGTFSSDGRRCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALSERISDGQS*
Ga0163162_110685021	3300013306	Switchgrass Rhizosphere	MDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAE
Ga0132258_103225403	3300015371	Arabidopsis Rhizosphere	MDRDTISQLVRLKLKDNRLPTGRALGIRETGMLSGDGRQCDACDERIAPNQKAVLVMVSLQWMSVFFHMDCYKVWDSERHALDEKNGDGQS*
Ga0132258_114698743	3300015371	Arabidopsis Rhizosphere	LVRLKLKDKRLPDGRAVAIREIFGDGRQCDACDEPIRPQQKAMLAMVSLEWMSVRFHVDCYKVWDAERLALSEKNDS*
Ga0132256_1002330881	3300015372	Arabidopsis Rhizosphere	MDRDVLHELVRFKLKDNRLPRSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHEDCYEVCDVERLALADQDRDAQGGSVTTESL*
Ga0132257_1023129402	3300015373	Arabidopsis Rhizosphere	LVRLKLKDKRLPDGRAVAIREIFGDGRQCDACDEPIRPQQNAMLAMVSLEWISARFHVDCYKVWDAERLALSEKNDS*
Ga0132255_1061768612	3300015374	Arabidopsis Rhizosphere	RRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDGDGTRPSPWTSVGDPPSA*
Ga0163161_108576021	3300017792	Switchgrass Rhizosphere	MDRDLVQQLIRLKLNDNRLPRDPAVGIREMGRLSSNGRQCDACDEGIGANQKAMLVMVSQEWMSLFFHADCYEMWDAERLL
Ga0163161_120510441	3300017792	Switchgrass Rhizosphere	MDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDG
Ga0207642_111393751	3300025899	Miscanthus Rhizosphere	MDRGFVGRLVRLKLADNRLPHGRAVAIRETGTFSSDGRRCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALSERISDGQS
Ga0207648_107656422	3300026089	Miscanthus Rhizosphere	MDTALIQELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDGEGTRPSPWTSVGDPPSA
Ga0207648_118580631	3300026089	Miscanthus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSGAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGG
Ga0209814_105656642	3300027873	Populus Rhizosphere	MDRDLVQQLIRLKLNDNRLARDPAVGIREMGRLSSNGRQCAACDEGIGANQKAMLVMVSQEWMSLFFHADCYEMWDAERLL
Ga0209488_110253961	3300027903	Vadose Zone Soil	CNEADYGPPMDLDLVQELVRLRLRDNRLPEGRAVDLRETTGDGRPCDACGEPIDPKQRAVLAMVSREWMSVRFHVDCYKVWDAERLALSEMNGHGRSSQ
Ga0207428_100284764	3300027907	Populus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSRAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL
Ga0209382_102331622	3300027909	Populus Rhizosphere	MDRDLLHELVRFKLKDNRLPRSGAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDVQGGSVTTESL
Ga0247818_107992131	3300028589	Soil	MDRDHLQELIRFKLKDNRLPRDPAVGIRETGRLSSDGRRCNACDQGISPNQKAVLVMVSREWMSVFFHADCYEVWDAERLALADQDRDARGGSVTTESR
Ga0307500_101511021	3300031198	Soil	VDRAFVQELVRLKLKDKRLPDGRAVAIREFGRFSADGRQCDACDERIGPNQKAVLVMVSLEWMAVFFHVDCYEVWDAE
Ga0307497_100582781	3300031226	Soil	MDRDLVQALVRLKLKTHRLPEGPAVGIREFGRFSADGRQCDACDERIGPNQTTVLVMVSLQWMSVFFHVDCYEVWDAERLAFAEKTSDGQS
Ga0310887_111431801	3300031547	Soil	RDVVGQSVRLKLVENRLPHGRAVAIRETGTFSSAGRHCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERLALSERNGDG
Ga0307469_101433533	3300031720	Hardwood Forest Soil	MDPTLIRELVRRRLKDGRLPQGRAVAIRETGRFSSERQCDACDERISPNQKAVMVMVSLQWMSVFFHDDCYKVWDAERLALFERDGDGTRPSPWTSVGDPPSA
Ga0307469_103268621	3300031720	Hardwood Forest Soil	MDRDLVQQLIRLKLNDNRLPRDPAVGIREMGRLSSNGRQCAACDEGIGANQKAMLVMVSQEWMSLFFHADCYEMWDAERLL
Ga0307469_105274571	3300031720	Hardwood Forest Soil	MDKDLVQALVRLKLKTHRLPEDPAVGIREFGRFSAGGRQCDACDERIGPDQTAVLVMVSLQWMSVFFHINCYEVWDAERLALSEKDGDSRADQ
Ga0307469_109842911	3300031720	Hardwood Forest Soil	MDRNFVGQLVRLKLADNRLPHGRAVAIRETGTFSSDGRQCDACDERIGPNQKAVLVMVSLQWMSVFFHVDCYKVWDAERLALSERTSDGQS
Ga0307469_114236532	3300031720	Hardwood Forest Soil	MDRGIVQELVRLKLKYHRLPEGRAVGIRETSGDGRQCDACDEPNDSKQKAVLAMVSLEWMSVFFPVDCYEVWDAERLALSERNGDG
Ga0307468_1007483802	3300031740	Hardwood Forest Soil	TADRSRMDRDTISQLVRLKLKDNRLPTGRALGIRETGSPSSDGRHCDACDERIAPNQKAVLVMVSLQWMSVFFHMDCYKVWDAERLALAEKNGDSQP
Ga0307468_1009632871	3300031740	Hardwood Forest Soil	MDPTLIRELVRRRLKDGRLPQGRVVCIREIGRFSSAGRQCDACDERIGPNQKAVLLMVSLQWMSVFFHDDCYKVWDAERLGAL
Ga0307468_1013841412	3300031740	Hardwood Forest Soil	VDRACVQELVRLKLKDKRLPDGRAVAIREIFGDGRQCDACDEPIRPQQKAMLAMVSLEWMSVRFHVDCYKVWDAERLALSEKNDS
Ga0307468_1022908161	3300031740	Hardwood Forest Soil	PRRSVVARSRMDRDFVGQSVRLKLADNRLPHGRAVAIRETGTFSSDGRHCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERATLSEKDGDSTS
Ga0307473_111187171	3300031820	Hardwood Forest Soil	QRLQMDRDVLHELVRFKLKDNRLPRSPAVGIRETGRLSSNGRRCNACDQGISPNQKAVLVMVSLEWMSVFFHADCYEVWDAERLALADQDRDAQGGSVTTESL
Ga0310907_101488751	3300031847	Soil	MDRDTISQLVRLKLKDNRLPTGRALGIRETRSPSSDGRHCDACDERIAPNQKAVLVMVSLQWMSVFFHMDCYKVWDAERLALAEKNGDSQP
Ga0310904_100200114	3300031854	Soil	MDRDLISQLVRLKLKTHRLPEGRAVGIREIGRFSSDGRQCDACDERIGPNQQAVLVMVSLEWMSVFFHVDCYKV
Ga0310900_106719761	3300031908	Soil	MDRDLISQLVRLKLKTHRLPEGRAVGIREIGRFSSDGRQCDACDERIGPNQQAVLVMVSLEWMSVFFHVDCYKVWDAERLVPSEKNGDGRDGQ
Ga0310900_116234712	3300031908	Soil	VDRACVQELVRLKLKDKRLPDGRAVAIRAIFGDGRQCDACDEPIRPQQNAMLAMVSLEWISARFHVDCYKVWDAERLALSEKNDR
Ga0310903_100231291	3300032000	Soil	TISQLVRLKLKDHRLPTGRALGIRETGSPSSDGRHCDACDERIAPNQKAVLVMVSLQWMSVFFHMDCYKVWDAERLALAEKNGDSQP
Ga0310897_101476511	3300032003	Soil	MDRDLISQLVRLKLKTHRLPEGRAVGIREIGRFSSDGRQCDACDERIGPNQQAVLAMVSLEWMSVFFHVDCYKVWDAERLVPSEKNGDGRDGQ
Ga0310890_116761021	3300032075	Soil	ACVQELVRLKLKDKRLPDGRAVAIREIFGDGRQCDACDEPIRPQQNAMLAMVSLEWISARFHVDCYKVWDAERLALSEKNDS
Ga0307470_100138594	3300032174	Hardwood Forest Soil	MDRDHLQELIRFKLKDNRLPRDPAVGIRETGRLSSDGRRCNACDQGISPNQKAVLVMVSREWMSVFFHTDCYEVWDAERLALADQDRDARGGSVTTESR
Ga0310889_102933211	3300032179	Soil	MDRDTISQLVRLKLKDNRLPTGRALGIRETGMLSSDGRQCDACDERCGPNQKAVLVMVSLQWKSVFFHLECYEVWAAERLALAEKNGDGSP
Ga0310889_103924502	3300032179	Soil	LPEGRAVGIREIGRFSSDGRQCDACDERIGPNQQAVLVMVSLEWMSVFFHVDCYKVWDAERLVPSEKNGDGRDGQ
Ga0307471_1001870402	3300032180	Hardwood Forest Soil	VSVPYWYAYTTTLSGAMDRDLVGQLVRLKLKDNRLPDRRAVAIRETGMLSSDGRQCDACDERIGPNQKAVLVMVSLEWMSVFFHVDCYEVWDAERATLSEKDGDSTS
Ga0307471_1002473882	3300032180	Hardwood Forest Soil	VDKAFVQELVRLRLKDKRLPEGRAVAIRETLGDGQQCDACDAPIVPSQKAVLAMVSLEWMSVRFHVDCYKVWDAERLGLSERNDS
Ga0307472_1003397291	3300032205	Hardwood Forest Soil	VDKAFVQELVRLRLKDKRLPEGRAVAIRETLGDGQQCDACDAPIVPSQKAVLAMVSLEWMSVRFHVDCYKVWDAE
Ga0307472_1025515801	3300032205	Hardwood Forest Soil	RLKLKTHRLPEGRAVGIREIGRFSSDGRQCDACDERIGPNQQAVLVMVSLEWMSVFFHVDCYKVWDAERLVPSERNGDGRDGQ
Ga0307472_1026756812	3300032205	Hardwood Forest Soil	CLISRRSVADRSRMDRNFVGQLVRLKLADNRLPHGRAVAIRETGTFSSDGRQCDACDERIGPNQKAVLVMVSLQWMSVFFHVDCYKVWDAERLALSERTSDGQS
Ga0314784_149669_61_336	3300034663	Soil	MDRDTISQLVRLKLKDNRLPTGRALGIRETGMLSSDGRQCDACDERCGPNQKAVLVMVSLQWMSVFFHLECYEVWAAERLALAEKNGDGSP
Ga0314786_067304_429_704	3300034664	Soil	MDRDTISQLVRLKLKDNRLPTGRALGIRETGSPSSDGRHCDACDERIAPNQKAVLVMVSLQWMSVFFHMDCYKVWDAERLALAEKNGDSQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066251

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences