Metagenome / Metatranscriptome Family F066248

Overview

Basic Information

• Family ID: F066248
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 127
• Average Sequence Length: 44 residues
• Representative Sequence: MNGLSAQGLADLAGVTEAEVERMVDLGILVARDGAGPFLET
• Number of Associated Samples: 91
• Number of Associated Scaffolds: 127

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 92.91 %
• % of genes near scaffold ends (potentially truncated): 98.43 %
• % of genes from short scaffolds (< 2000 bps): 88.98 %
• Associated GOLD sequencing projects: 87
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (56.693 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.685 % of family members)
• Environment Ontology (ENVO): Unclassified (34.646 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (30.709 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 26.09%
  β-sheet: 0.00%
  Coil/Unstructured: 73.91%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF01791	DeoC	4.72
PF00291	PALP	4.72
PF04679	DNA_ligase_A_C	3.15
PF00106	adh_short	2.36
PF00436	SSB	2.36
PF02467	Whib	2.36
PF12867	DinB_2	2.36
PF00089	Trypsin	2.36
PF12902	Ferritin-like	1.57
PF00589	Phage_integrase	1.57

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.15
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	2.36
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	2.36
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.79
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.79
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.79
COG4188	Predicted dienelactone hydrolase	General function prediction only [R]	0.79
COG4124	Beta-mannanase	Carbohydrate transport and metabolism [G]	0.79
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.79
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.48 %
Unclassified	root	N/A	42.52 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.48 %
Unclassified	root	N/A	42.52 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.69 %
Unclassified	root	N/A	42.52 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	3.15 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.22 %
Unclassified	root	N/A	42.52 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.28 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	3.15 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.36 %
Unclassified	root	N/A	42.52 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.79 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.69 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3.15 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.79 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.57 %
Unclassified	root	N/A	42.52 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.57 %

Level 7

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.57 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.79 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.79 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.79 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.57 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.57 %
Thermogemmatisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales	0.79 %
Unclassified	root	N/A	42.52 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.36 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.15 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.79 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.79 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.79 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.79 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.79 %
Thermogemmatisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae	0.79 %
Unclassified	root	N/A	42.52 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.57 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.79 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.79 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.79 %
Quadrisphaera	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera	0.79 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.57 %
Spongiactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora	0.79 %
Thermogemmatispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora	0.79 %
Unclassified	root	N/A	42.52 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.79 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.79 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.57 %
Spongiactinospora gelatinilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora gelatinilytica	0.79 %
Thermogemmatispora onikobensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora → Thermogemmatispora onikobensis	0.79 %
Unclassified	root	N/A	42.52 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.79 %
unclassified Quadrisphaera	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera → unclassified Quadrisphaera	0.79 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.36 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.79 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.79 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.79 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.36 %
Pseudonocardia sp. TRM90224	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. TRM90224	0.79 %
Quadrisphaera sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Quadrisphaera → unclassified Quadrisphaera → Quadrisphaera sp.	0.79 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.57 %
Spongiactinospora gelatinilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora gelatinilytica	0.79 %
Thermogemmatispora onikobensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Thermogemmatisporales → Thermogemmatisporaceae → Thermogemmatispora → Thermogemmatispora onikobensis	0.79 %
Unclassified	root	N/A	42.52 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000033|ICChiseqgaiiDRAFT_c2420003	Not Available	915
3300001431|F14TB_100716456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	540
3300004479|Ga0062595_100331399	Not Available	1047
3300005562|Ga0058697_10383470	Not Available	692
3300005981|Ga0081538_10000728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35897
3300005981|Ga0081538_10042108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2887
3300005981|Ga0081538_10339885	Not Available	545
3300006581|Ga0074048_11327566	All Organisms → cellular organisms → Bacteria	590
3300006847|Ga0075431_100763192	All Organisms → cellular organisms → Bacteria	942
3300006847|Ga0075431_100929289	All Organisms → cellular organisms → Bacteria	839

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.50%
Host-Associated	Host-Associated	31.50%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.51%
Plants	Host-Associated → Plants	31.50%
Terrestrial	Environmental → Terrestrial	62.99%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.79%
Freshwater	Environmental → Aquatic → Freshwater	1.57%
Phylloplane	Host-Associated → Plants → Phylloplane	3.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.98%
Roots	Host-Associated → Plants → Roots	2.36%
Sediment	Environmental → Aquatic → Sediment	3.94%
Soil	Environmental → Terrestrial → Soil	62.20%

Type

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	0.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.36%
Sand	Environmental → Terrestrial → Soil → Sand	17.32%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.41%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.94%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.41%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	17.32%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.57%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.79%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	3.15%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.79%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	17.32%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.15%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	18.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.79%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.87%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_24200032	3300000033	Soil	MNTLSEAGLADLAGVTEAEVRRLVELGVLIARDGAGPFLETDVPKVRLAT
F14TB_1007164561	3300001431	Soil	METDLGALSASELAELAGATTAAVARMVGLGVLVA
Ga0062595_1003313991	3300004479	Soil	MNGLSASELADLAGVTEAEVGRLVDLGVLVTRDGDGPFLAADAQKIR
Ga0058697_103834703	3300005562	Agave	MKELSASGLADLAGVTEVEVGRLVELGILVPRDGAGPFRETDVQKVRLA
Ga0081538_1000072839	3300005981	Tabebuia Heterophylla Rhizosphere	MKGLSAAGLADLAGVTEVEVERLVDLGILVPRDGGAGPFLETDVQKVRLAAAGER
Ga0081538_100421081	3300005981	Tabebuia Heterophylla Rhizosphere	MTRLSAARLADLAGVTAAEVERLVDLGVLVARDGGEPFL
Ga0081538_103398851	3300005981	Tabebuia Heterophylla Rhizosphere	MNGLSAARLADLAGVTAAEVERLVDLGVLVARDGGEPFLEIDVP
Ga0074048_113275662	3300006581	Soil	MNALSASELADLVGVTEAEVGRLVDFGVLVARPGAG
Ga0075431_1007631922	3300006847	Populus Rhizosphere	MNGLSASGLADLAGTTTAEVQRLVEFGILVARDGTD
Ga0075431_1009292892	3300006847	Populus Rhizosphere	MGGLSAAGLADLAGATEAEVARLVELGVLVAREGAGPFR
Ga0114129_103246514	3300009147	Populus Rhizosphere	MNALSASGLADLAGTTQAEVERLVELGILVARPGPAPFLASDVQKVRLAE
Ga0114129_105456001	3300009147	Populus Rhizosphere	MNGLSASELADRAGVTEAEVQRLVELGILVARDGDQP
Ga0111538_109140022	3300009156	Populus Rhizosphere	MTGLSASGLAGLAGVTVAEVQRLMEFGVLVARDGSDPFLESDVPKVRLA
Ga0126307_103383423	3300009789	Serpentine Soil	MNGLSAQGLADLAGVTEAEVRRLVDLGILVTRDGADPFLAADV
Ga0126307_106669892	3300009789	Serpentine Soil	MNALSAAGLADLAGVTEAEVQRLVDLGILVTRDGADPFLETDVQKVRPATACEQ
Ga0126307_117006152	3300009789	Serpentine Soil	MNALSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQ
Ga0105056_10334262	3300009801	Groundwater Sand	MDSDMEPLSAAGLAELAGATVAEVERLVALGILTPRDGARPFLATDVQ
Ga0105071_10588951	3300009808	Groundwater Sand	MEPLSAAGLAELAGATEAEVEHMVDLGILVPRDGADPFL
Ga0105084_10619571	3300009811	Groundwater Sand	MKTLAASELAELVGVTEAEVQRLVDLGILVARDGADPFLETDAPKVRL
Ga0105070_10065561	3300009815	Groundwater Sand	MEPKLAPLSTSELAELAGATELEVDRMVGLGILVSRDRSRPFLA
Ga0105070_10205502	3300009815	Groundwater Sand	METQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLATDVQK
Ga0105070_10634591	3300009815	Groundwater Sand	MNGLSASGLADLAGTTTVEVQRLVELGILVARDGPDPFLDTDVQKVR
Ga0105062_10642931	3300009817	Groundwater Sand	MEPLSAAGLAELAGATEAEVEHMVDLEILVPRDGAGPFLATDVQK
Ga0105062_10669761	3300009817	Groundwater Sand	MKGLSAAGLADLAGTTAAEVQRLVDLGILVARDGAGPFLETDVQKVRLAAAC
Ga0105058_10086293	3300009837	Groundwater Sand	METQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLAT
Ga0126313_108710161	3300009840	Serpentine Soil	MNGLSASELANLVGVTEVEVERLVELGVLVARDGAGPFLER
Ga0105074_11068462	3300010029	Groundwater Sand	MNVLSAAGLADLAGVTEAEVERMVDLGLLVARDGAGPFLE
Ga0126304_104911441	3300010037	Serpentine Soil	MNGLSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQK
Ga0126315_108161711	3300010038	Serpentine Soil	MNGLSASELADLAGVTAAEVDRLVALGILVARESGGPFLETDVQKVRLGM
Ga0126312_100068381	3300010041	Serpentine Soil	MKELSAAELADLAGVTEAEVRRLVDLGILVTRHGAAPF
Ga0126314_101794052	3300010042	Serpentine Soil	MKGLSAAELADLAGTTAAEVQQLVGLGILVARDGANPFLA
Ga0126314_109727311	3300010042	Serpentine Soil	MNALSASGLADLAGVTEAEVERMVDLGVLVARDGDGPFLAA
Ga0126310_114252991	3300010044	Serpentine Soil	MNGLSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQKVR
Ga0126311_105781531	3300010045	Serpentine Soil	MDGLSVSGLADLAGTTAAEVERLVQLGVLAARDGAGPFLESDVPKV
Ga0137383_100304685	3300012199	Vadose Zone Soil	MNGLSASELADLVGVTAVEVDRLVDLGILVPRDGAG
Ga0137374_102118851	3300012204	Vadose Zone Soil	MNGLSASGLADLAGVTEAEVQRLVDLGILVARDGAGPFRETDAQKV
Ga0137374_109184961	3300012204	Vadose Zone Soil	MKPQWDDSGMNGLSASELADLVGVTAVEVDRLVDLGILVPRDGAGPFLETDVQKVRL
Ga0137374_110551272	3300012204	Vadose Zone Soil	MDTEMRALSASELADLVGVTKAEVDRLVGLGILVARDGAGPFLETDVQK
Ga0137372_102735383	3300012350	Vadose Zone Soil	MNALSASGLADLAGVTEVEIQRLVDLGVLVARDGGGPFLATDVQKVRLA
Ga0137372_108989872	3300012350	Vadose Zone Soil	MNALSAAGLADLAGVTEAEVERLVELGILVARDGAGPFLETDVQKVR
Ga0137368_100800911	3300012358	Vadose Zone Soil	METEIGALSASELADLVGVTAVEVERLVGLGVLVARDGAGPFLET
Ga0137368_103181951	3300012358	Vadose Zone Soil	MERDMGPLSAAGLAELAGATEAEVERMIDLGILVPRDGAGPFLA
Ga0137375_103824681	3300012360	Vadose Zone Soil	MNALSAAGLADLAGVTEAEVQRLVDLGILVARDGADP
Ga0137375_111080931	3300012360	Vadose Zone Soil	MDTEMRALSASELADLVGVTKAEVDRLVGLGILVARDGAGPFL
Ga0182008_101507683	3300014497	Rhizosphere	MNGLSAQGLADLAGVTEAEVRRLVDLGILVARDGA
Ga0184632_102729692	3300018075	Groundwater Sediment	MNALSASGLADLAGTTQAEVDRLVELGILVARPGPAP
Ga0184609_101657442	3300018076	Groundwater Sediment	MKGLSASGLADLAGTTAAEVQRLVDLGILVARDGAGPFLETDVQ
Ga0184625_104510331	3300018081	Groundwater Sediment	MEALSASALADLAGTTAAEVQRMVDLGVLVARDDAGPFRATDVQKVRIAA
Ga0184625_104923861	3300018081	Groundwater Sediment	MNGLSASGLADLAGTTAAEVQRLVDLGILVARDGTDPFLETDVQKVRLA
Ga0190271_118549892	3300018481	Soil	MNGLSASELADLAGVTEAEVERLVDLGILEARDGAD
Ga0184646_16339061	3300019259	Groundwater Sediment	MDSDMEPLSAAGLAELAGATEAEVERMVTLGILVPRDGAAPFLATDVQK
Ga0193705_10550741	3300019869	Soil	VKGLSASALADLAGVGPAEVERLVELGILVARDGP
Ga0193701_10311041	3300019875	Soil	MNALSAAGLADLAGVTQAEVERLADLGVLVARDGAGPFLESDVQKVRLAAA
Ga0193739_10150782	3300020003	Soil	MNGLSASGLADLAGTTAAEVERMVDLGILVARDGVDPFLE
Ga0210378_102784952	3300021073	Groundwater Sediment	MNGLSASGLADLAGTTAAEVERMVDLGILVARGGVDPFLDTDVQKVRL
Ga0222623_100323682	3300022694	Groundwater Sediment	MNALSAAGLADLAGVTEAEVGRLVDLGILVARDGAGPFLAADVQKVRLA
Ga0207695_104252782	3300025913	Corn Rhizosphere	MNGLSAAALADLAGVTKAEVGRLVDLGVLVARPGAGPFLE
Ga0207706_117256581	3300025933	Corn Rhizosphere	MNALSASGLADLAGTTEAEVQRLVDLGILAARDGAGPFLE
Ga0207668_106075462	3300025972	Switchgrass Rhizosphere	MKELSAAGLADLAGVTEAEVQRLVDLGILVARDGDGPFLEADAQ
Ga0209900_10122821	3300026888	Groundwater Sand	VEPLSAAGLAELAGATVAEVERLVALGILTPRDGARPFLATDVQKIRLAKAC
Ga0209879_10240862	3300027056	Groundwater Sand	MKGLSASGLADLAGTTAAEVQRLVDLGILVARDGADPFLETDVQKVRLAAACE
Ga0209879_10630022	3300027056	Groundwater Sand	METDPGALSATELAELAGATKAEVERMVGLGILVARDGAGPF
Ga0209846_10196481	3300027277	Groundwater Sand	METQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLATDVQRVRPDGTRRADQ
Ga0209846_10676531	3300027277	Groundwater Sand	MNGLSASGLADLAGTTTAEVQRLVELGILVARDGTDPFLDTDVQK
Ga0209861_10363391	3300027332	Groundwater Sand	MEPLSAAGLAELAGATEAEVEHMVDLGILVPRDGADP
Ga0209842_10305472	3300027379	Groundwater Sand	MEPDVGALSASELAELAGATEAEVERLVELGILVARAGAGPFLETDV
Ga0209899_10155361	3300027490	Groundwater Sand	MGTQLVPLSTSELAELAGATETEVDRMVGLGILVARDGAGPFLATDVQK
Ga0209899_10646161	3300027490	Groundwater Sand	MNGLSAAGLADLAGVTEAEVGRLVELGILVARDGTSPFLAADAQ
Ga0209574_101362012	3300027809	Agave	MDGLSASALADLAGTTAAEVQRLADLGILVARDRAGPER
Ga0209860_10037641	3300027949	Groundwater Sand	VEPLSAAGLAELAGATVAEVERLVALGILTPRDGARPFLATDVQK
Ga0209853_10161411	3300027961	Groundwater Sand	MKTLSAAGLADLAGTTVAEVQRLVDLGILVARDGADPFLETDAPKVRLA
Ga0209853_10536303	3300027961	Groundwater Sand	MKTLSASELAELVGVTEAEVQRLVDLGILVARDGADPFLETDAPKVRLA
Ga0247818_113977861	3300028589	Soil	MNALSASGLADLAGTTQAEVDRLVELGILVARPGPAPFLASDVQKV
Ga0247821_108668021	3300028596	Soil	MNGLSAAALADLAGVTEAEVGRLVDFGVLVARPGAGPFLE
Ga0247820_102317161	3300028597	Soil	MNALSAAGLADLAGVTEAEVERMVDLGILVTRDGAGPFLETDVQK
Ga0307321_10621831	3300028704	Soil	MNGLSAQGLADLAGVTEAEVQRLVDLGVLVTRDGAGPFRETDVQRVRCWSRGRRPRV
Ga0307322_101000711	3300028710	Soil	MNRLSASELADLAGTKAAEVARLVELGILVPRDGPDPFLETDVQKVRLAAAC
Ga0307293_101318542	3300028711	Soil	MNGLSASELADLVGVTEAEVERLAELGILVARDGAGPFLERDVPKVR
Ga0307293_101811661	3300028711	Soil	MNGLSAAALADLAGVTEAEVGRLVDLDVLVARPGAG
Ga0307303_100784071	3300028713	Soil	MNGLSASELADLVGVTEAEVERLAELGILVARDGAGPFLE
Ga0307309_102236182	3300028714	Soil	VKGLSASALADLAGVGPAEVERLVELGILVARDGPDPF
Ga0307313_101896652	3300028715	Soil	MNALSAAGLADLAGVTQAEVERLADLGVLVARDGAGPFLESDVQKVRLAAAC
Ga0307313_102341802	3300028715	Soil	MNGLSAQGLADLAGVTEAEIRRLVDLGILVARDGAGPFLETDVQKVR
Ga0307311_100479312	3300028716	Soil	MNGLSAAALTDLAGVTEAEVWRLVNFGVLVARPGA
Ga0307298_100694332	3300028717	Soil	MNGLSAAALADLAGVTEAEVWRLVDFGVLVARPGAGPFLETDVQKVRLATA
Ga0307315_100082231	3300028721	Soil	MNGLSASELAGLAGVTEADVGRLVDLGVLVARDGDGPFLETDAQKVRLVTACEQ
Ga0307319_102493251	3300028722	Soil	MEALSASALADLAGTTAAEVQRMVDLGILVTRDGTGPF
Ga0307320_100501851	3300028771	Soil	MNALSAAGLADLAGVTEAEVQQMVDLGILVARAGPGPFLETDAQK
Ga0307290_103278642	3300028791	Soil	MNGLSAAELADLAGVTEAEVQRLVALGILVARDGAGPFRET
Ga0307287_100254793	3300028796	Soil	MDGLSVSGLADLAGTTAAEVERLVQLGVLTARDGAGPF
Ga0247825_100098941	3300028812	Soil	MGGLSAAGLADLAGATVAEVERLVALGVLVAREGAGPFRESDVPK
Ga0307302_102706313	3300028814	Soil	MNALSAAGLADLAGTTEAEVERLVDLGILVTRDGADPFL
Ga0307296_105949572	3300028819	Soil	MNRLSASELADLAGTKAAEVARLVELGILVPRDGPDPFLETDVQKVRLA
Ga0307289_102985622	3300028875	Soil	MNALSAAGLADLAGVTEAEVERMVDLGILVTRDGAGPFLETDVQKVRLATACE
Ga0307278_100621262	3300028878	Soil	MNALSAAGLADLAGVTEAEVQRLVDLGILVTRDGADPFLAADVQ
Ga0307278_100903533	3300028878	Soil	MNGLSASELADLVGVTEAEVERLAELGILVARDGAGPFLERDV
Ga0247826_100437482	3300030336	Soil	MDGLSVSGLADLAGATEAEVERLVALGVLVAREGAGPFRESDVPKVRLA
Ga0268243_10658921	3300030510	Soil	MNGLSASELADLAGVTEAQVQRLVGLGILVPRDGA
Ga0268255_100953431	3300030516	Agave	MDGLSAADLADLAGTTVAEVGRLVDLGVLVARDGAGPFLETDAQK
Ga0307408_1017300251	3300031548	Rhizosphere	MDGLSVSGLADLAGTTAAEVERLVQLGVLAARDGAGPFLESDVPKVRL
Ga0307405_118684051	3300031731	Rhizosphere	MNGLSASELADLAGVTEAEVERLAGLGILEARDDAGPFLETDA
Ga0307413_105377421	3300031824	Rhizosphere	MNGLSAAGLADLAGVTEAEVGRLVDLGILAPRDGTEPFLAADVQ
Ga0307410_102736501	3300031852	Rhizosphere	MIGGMNGLSASELADLAGVTEAEIRRLVDLGILVARDGAGP
Ga0307410_102754471	3300031852	Rhizosphere	MDGLSVSGLADLAGTTAAEVERLVQLGVLAVRDGAGPFLEGDVPK
Ga0307410_114934852	3300031852	Rhizosphere	MKKLSASALADLAGVTEVEVARLVELGILVARDGAGQIA
Ga0307410_115272571	3300031852	Rhizosphere	MKGLSAAGLADLAGVTEAEVARLVDLGILVPRDDAGPFLE
Ga0307410_117259881	3300031852	Rhizosphere	MKGLSASELADLAGVTEAEVARLVDLGILVARDGDQPFLAADAQ
Ga0307407_108130931	3300031903	Rhizosphere	MNGLSASELADLAGVTEAEVRRMVDLGIVEARDGADPFVE
Ga0307407_116686341	3300031903	Rhizosphere	MNALSAAGLADLAGVTEAEVGRLVELGILVARDGPGPFLVADAQKVRL
Ga0307412_105285472	3300031911	Rhizosphere	MNELSASELADLVGVTEAEVARLVDLGILVPRDDAGPFRA
Ga0307412_116263831	3300031911	Rhizosphere	MTGLSAAGLADLAGVTEGEVERLADLGILAARDGTGPF
Ga0307412_117077401	3300031911	Rhizosphere	MNGLSASELADLAGVTEAEIRRLVDLGILVARDGAGPFL
Ga0307412_117614291	3300031911	Rhizosphere	MDGLSAAALADLAGVTEVEVERLVGLGILVARDGAGPFLER
Ga0307409_1005709611	3300031995	Rhizosphere	MNALSAAGLADLAGVTEAEVERLVELGILVPWDGAGPFRET
Ga0307416_1006495963	3300032002	Rhizosphere	MNGLSAQGLADLAGVTEAEVERMVDLGILVARDGAGPFLET
Ga0307416_1020360822	3300032002	Rhizosphere	MEREPGPLSASELADLAGVTEAEVAPMVGVGVLLPREG
Ga0307414_114862132	3300032004	Rhizosphere	MNGLSAQGLADLAGVTEAEVRRLVDLGILVARDGAGPFLETDVQKV
Ga0307411_115174612	3300032005	Rhizosphere	MNGLSASELADLAGVTEAEVRRMVDLGILEARDGA
Ga0326721_106637542	3300032080	Soil	MNGLSASELADLAGVTEAEVRRLVDLGILEARDGA
Ga0307415_1000471911	3300032126	Rhizosphere	MDGLSAAAPADLAGVTEAEVQRLADLGILAPRDGTDPFLA
Ga0307415_1001865092	3300032126	Rhizosphere	MNGLSASELADLAGVTEAEVERLAGLGILEARDGAGPFLETDAKKV
Ga0307415_1010494122	3300032126	Rhizosphere	MNGLSAAGLADLAGVTEAEVARLVDLGVLVARDGVGPFLEAD
Ga0307415_1013932661	3300032126	Rhizosphere	MKGLSAAGLADLAGVTEAEVARLVDLGILVPRDDAG
Ga0307415_1015586392	3300032126	Rhizosphere	VTGAGMDGLSAAAPADLAGVTEAEVQRLADLGILAPRDGTDPFLA
Ga0268251_102812582	3300032159	Agave	MKGLSAAGLADLAGVTEAEVRRLVDLGVLVAREGVGPFL
Ga0247829_105649461	3300033550	Soil	MDGLSVSGLADLAGATEAEVERLVELGVLVAREGAGPFRESDVPKV
Ga0364945_0259107_1_141	3300034115	Sediment	MNALSAAGLADLAGVTEAEVERMVDLGILVARDGAGPFLETDVQKVG