Metagenome / Metatranscriptome Family F066171

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066171
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	42 residues
Representative Sequence	MSEFVTKSVAQEQQEQRIETRTAVKRIGGFTIVATAVAVLAVLGV
Number of Associated Samples	110
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	99.21 %
% of genes from short scaffolds (< 2000 bps)	94.49 %
Associated GOLD sequencing projects	108
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.079 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (14.173 % of family members)
Environment Ontology (ENVO)	Unclassified (30.709 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.669 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.53% β-sheet: 0.00% Coil/Unstructured: 42.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00378	ECH_1	15.75
PF00903	Glyoxalase	6.30
PF02148	zf-UBP	3.15
PF13602	ADH_zinc_N_2	2.36
PF12681	Glyoxalase_2	1.57
PF00753	Lactamase_B	1.57
PF00027	cNMP_binding	0.79
PF08240	ADH_N	0.79
PF13281	MAP3K_TRAF_bd	0.79
PF03928	HbpS-like	0.79
PF14417	MEDS	0.79
PF12680	SnoaL_2	0.79
PF00440	TetR_N	0.79
PF00578	AhpC-TSA	0.79
PF07681	DoxX	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	3.15
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.79
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.08 %
Unclassified	root	N/A	29.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.08 %
Unclassified	root	N/A	29.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.08 %
Unclassified	root	N/A	29.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	9.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.15 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.66 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.87 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.36 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.57 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.87 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.36 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.57 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	4.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.36 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1.57 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	4.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.36 %
Sphingomonas oligoaromativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas oligoaromativorans	0.79 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.92 %
Granulicella sp. L46	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	4.72 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.36 %
Sphingomonas oligoaromativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas oligoaromativorans	0.79 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10040727	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300001593\|JGI12635J15846_10497825	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300003505\|JGIcombinedJ51221_10224762	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300004080\|Ga0062385_11232952	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300004082\|Ga0062384_101314857	Not Available	529	Open in IMG/M
3300004152\|Ga0062386_101685116	Not Available	529	Open in IMG/M
3300004479\|Ga0062595_102268400	Not Available	534	Open in IMG/M
3300005534\|Ga0070735_10162046	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300005538\|Ga0070731_10272871	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300005554\|Ga0066661_10140267	All Organisms → cellular organisms → Bacteria	1473	Open in IMG/M
3300005574\|Ga0066694_10132967	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300005610\|Ga0070763_10043734	All Organisms → cellular organisms → Bacteria → Proteobacteria	2106	Open in IMG/M
3300005610\|Ga0070763_10946959	Not Available	514	Open in IMG/M
3300006052\|Ga0075029_100875583	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300006086\|Ga0075019_10569577	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300006102\|Ga0075015_100068141	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300006102\|Ga0075015_100477088	Not Available	715	Open in IMG/M
3300006163\|Ga0070715_10822305	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300006176\|Ga0070765_100853180	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300006354\|Ga0075021_10632315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	685	Open in IMG/M
3300009552\|Ga0116138_1184947	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300009631\|Ga0116115_1103816	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300009665\|Ga0116135_1395972	Not Available	559	Open in IMG/M
3300009672\|Ga0116215_1492130	Not Available	530	Open in IMG/M
3300009698\|Ga0116216_10924565	Not Available	522	Open in IMG/M
3300009839\|Ga0116223_10166053	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300010341\|Ga0074045_10268328	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300010343\|Ga0074044_10658487	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	683	Open in IMG/M
3300012202\|Ga0137363_10465493	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300012202\|Ga0137363_10982056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300012944\|Ga0137410_11547076	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300014164\|Ga0181532_10345773	Not Available	834	Open in IMG/M
3300014164\|Ga0181532_10715394	Not Available	539	Open in IMG/M
3300014165\|Ga0181523_10083748	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1929	Open in IMG/M
3300014200\|Ga0181526_10749091	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300014200\|Ga0181526_10952488	Not Available	540	Open in IMG/M
3300014201\|Ga0181537_10465458	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300014501\|Ga0182024_11390445	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300014501\|Ga0182024_11449411	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300014501\|Ga0182024_11615597	Not Available	734	Open in IMG/M
3300014638\|Ga0181536_10414431	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	599	Open in IMG/M
3300014654\|Ga0181525_10194966	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300014654\|Ga0181525_10683800	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300015241\|Ga0137418_10384271	Not Available	1149	Open in IMG/M
3300017822\|Ga0187802_10100995	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300017823\|Ga0187818_10056617	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300017927\|Ga0187824_10254938	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	610	Open in IMG/M
3300017929\|Ga0187849_1208469	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300017930\|Ga0187825_10195494	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300017932\|Ga0187814_10209437	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300017933\|Ga0187801_10468992	Not Available	530	Open in IMG/M
3300017933\|Ga0187801_10493852	Not Available	516	Open in IMG/M
3300017940\|Ga0187853_10114263	All Organisms → cellular organisms → Bacteria	1318	Open in IMG/M
3300017943\|Ga0187819_10578140	Not Available	637	Open in IMG/M
3300017948\|Ga0187847_10210589	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300017993\|Ga0187823_10115700	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300018008\|Ga0187888_1284357	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300018012\|Ga0187810_10179903	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300018017\|Ga0187872_10267609	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300018020\|Ga0187861_10135107	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300018022\|Ga0187864_10341655	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300018030\|Ga0187869_10375991	Not Available	679	Open in IMG/M
3300018030\|Ga0187869_10538551	Not Available	554	Open in IMG/M
3300018034\|Ga0187863_10271313	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300018035\|Ga0187875_10391297	Not Available	743	Open in IMG/M
3300018037\|Ga0187883_10695462	Not Available	531	Open in IMG/M
3300018038\|Ga0187855_10140424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1444	Open in IMG/M
3300018040\|Ga0187862_10154093	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300018040\|Ga0187862_10457066	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300018046\|Ga0187851_10646616	Not Available	597	Open in IMG/M
3300018046\|Ga0187851_10846260	Not Available	514	Open in IMG/M
3300018047\|Ga0187859_10592246	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300020580\|Ga0210403_11506021	Not Available	506	Open in IMG/M
3300020581\|Ga0210399_11383338	Not Available	551	Open in IMG/M
3300021178\|Ga0210408_11457168	Not Available	514	Open in IMG/M
3300021181\|Ga0210388_10793307	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300021401\|Ga0210393_10799416	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300021401\|Ga0210393_11604638	Not Available	516	Open in IMG/M
3300021402\|Ga0210385_10682817	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300021402\|Ga0210385_11503379	Not Available	514	Open in IMG/M
3300021404\|Ga0210389_10318979	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300021407\|Ga0210383_11085423	Not Available	676	Open in IMG/M
3300021433\|Ga0210391_11402153	Not Available	537	Open in IMG/M
3300021474\|Ga0210390_11097830	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300021477\|Ga0210398_11343041	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	560	Open in IMG/M
3300021478\|Ga0210402_10040166	All Organisms → cellular organisms → Bacteria	4066	Open in IMG/M
3300024232\|Ga0247664_1167333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	519	Open in IMG/M
3300024271\|Ga0224564_1034394	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300024271\|Ga0224564_1072014	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300025406\|Ga0208035_1038609	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300025506\|Ga0208937_1126165	Not Available	552	Open in IMG/M
3300026309\|Ga0209055_1037940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2151	Open in IMG/M
3300026515\|Ga0257158_1093261	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300027432\|Ga0209421_1043384	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300027497\|Ga0208199_1049614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	898	Open in IMG/M
3300027590\|Ga0209116_1028705	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300027641\|Ga0208827_1182120	Not Available	567	Open in IMG/M
3300027795\|Ga0209139_10334963	Not Available	530	Open in IMG/M
3300027889\|Ga0209380_10401214	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300027895\|Ga0209624_10477782	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300027898\|Ga0209067_10270471	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300028017\|Ga0265356_1006776	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300028746\|Ga0302233_10035901	All Organisms → cellular organisms → Bacteria	2086	Open in IMG/M
3300028775\|Ga0302231_10449231	Not Available	544	Open in IMG/M
3300028806\|Ga0302221_10223769	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300028859\|Ga0302265_1221562	Not Available	566	Open in IMG/M
3300029914\|Ga0311359_10325285	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300029943\|Ga0311340_10617597	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300029999\|Ga0311339_11396056	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300030503\|Ga0311370_10980550	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300030506\|Ga0302194_10258183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	700	Open in IMG/M
3300030580\|Ga0311355_10552212	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300030617\|Ga0311356_10027399	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6167	Open in IMG/M
3300030760\|Ga0265762_1060495	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	777	Open in IMG/M
3300031090\|Ga0265760_10182174	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300031128\|Ga0170823_16361632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas oligoaromativorans	567	Open in IMG/M
3300031234\|Ga0302325_11821962	Not Available	761	Open in IMG/M
3300031234\|Ga0302325_13204846	Not Available	522	Open in IMG/M
3300031524\|Ga0302320_11161636	Not Available	796	Open in IMG/M
3300031708\|Ga0310686_107790574	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300031708\|Ga0310686_117831629	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300031788\|Ga0302319_11549665	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300032174\|Ga0307470_11834259	Not Available	514	Open in IMG/M
3300032828\|Ga0335080_10390564	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300032893\|Ga0335069_10307932	All Organisms → cellular organisms → Bacteria	1883	Open in IMG/M
3300033134\|Ga0335073_10047249	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5777	Open in IMG/M
3300033829\|Ga0334854_067254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46	854	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.21%
Host-Associated	Host-Associated	0.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.27%
Aquatic	Environmental → Aquatic	40.94%
Plants	Host-Associated → Plants	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.67%
Freshwater	Environmental → Aquatic → Freshwater	36.22%
Peat	Environmental → Terrestrial → Peat	12.60%
Sediment	Environmental → Aquatic → Sediment	4.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.79%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	36.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.60%
Loam	Environmental → Terrestrial → Soil → Loam	7.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	24.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.60%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	14.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.09%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.72%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.15%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.15%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.36%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.57%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025406	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028017	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE4	Host-Associated	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028859	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_1	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100407271	3300000567	Peatlands Soil	MSELVTKSVPPEQQQRRIETRTAVKRIGDFTIVVTAVAVLGVLGA
JGI12635J15846_104978251	3300001593	Forest Soil	MSKLVTKSAAQEQREQKMETRTAVKRIAGYTIVVTAVAALVILAATAV
JGIcombinedJ51221_102247622	3300003505	Forest Soil	MSELVTKSGAREQQEQKMETLTGVGRITRLTIVATAVAVLAVLAAIGL
Ga0062385_112329522	3300004080	Bog Forest Soil	MPEFVTKSVAQEQPAKKIETRTSAERFAAFIISAIAVAVL
Ga0062384_1013148571	3300004082	Bog Forest Soil	MSEFVTKSVAQEQQAPKVETRTAVARTAGLALIATAVAVLGVLGV
Ga0062386_1016851162	3300004152	Bog Forest Soil	MSEFVTKSVAQEQEEQRIETRTAVKRIGGFTIVATAVAVLAVLG
Ga0062595_1022684001	3300004479	Soil	MSELVTKSVAQEQQEQKIETRTAVERIAGFAIIATAVAVLSVLVA
Ga0070735_101620463	3300005534	Surface Soil	MSEPVTKSVRQELQEQKIETRTAVAGIAGFVLIATAMAALAVLG
Ga0070731_102728712	3300005538	Surface Soil	MSELVTKSVAQETREQRKIETRSAVACIAGFALIATAMVALAVLG
Ga0066661_101402673	3300005554	Soil	MSELVTKSVAQEQPGQKIETRTAAQRVAGFTVVVTAVAVL
Ga0066694_101329671	3300005574	Soil	MSELVTKSVAQEQREQRIETHAAVEHISGFTIVATAVAVLAVLVATAVY
Ga0070763_100437341	3300005610	Soil	MSGLVRKSAVQGRQEQKLETRTAVERSVGFTIVTAAVVVLA
Ga0070763_109469591	3300005610	Soil	MSEPVTNPVPQEQPEQRIETRTAVKRIAGFTTVAIAVAVLA
Ga0075029_1008755831	3300006052	Watersheds	MPELVTKSVAQEQQERKIETRTAVERLAGFTIVATAVAVLAVL
Ga0075019_105695771	3300006086	Watersheds	MSEPVTKSVPQEEQELRAKSRTAVKRIGGLIIVATAVAALAALGVM
Ga0075015_1000681411	3300006102	Watersheds	MSDLVTKSVPQEQQEQKIETQTAVERIARFTVVATA
Ga0075015_1004770882	3300006102	Watersheds	MFEFVTKSVAQEQPEAKIETRSAVERSAGFTIVAI
Ga0070715_108223052	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MSELVTKSVAQEQPGQKIETRTAAQRVAGFTVVVTAVAVLAVLV
Ga0070765_1008531801	3300006176	Soil	MSEFVTKSVAQEQQEQRIETRTAVKRIGGFTIVATAVAVLAVLGV
Ga0075021_106323153	3300006354	Watersheds	MSELVTKSVAQEQPEHKIETRTAAKRIAGFTIVATAVA
Ga0116138_11849472	3300009552	Peatland	MSELVTKSVPQEQQEQRIETHIAVKRIGGFTVVATAVAVLAVLGAAALF
Ga0116115_11038162	3300009631	Peatland	MSELVTKSVPQEQQEERIETRTAVKHIGGFTAVATAVAVLAVLG
Ga0116135_13959721	3300009665	Peatland	MSEFLTKSVAQEQQEQKIETRDAAKRIAGFTIAATAV
Ga0116215_14921301	3300009672	Peatlands Soil	MSELVTKSVPPEQQQRRIETRTAVKRIGDFTIVVTAVAVLGVLGAVVLY
Ga0116216_109245651	3300009698	Peatlands Soil	MSEFVTKAVAQEEQEQRIETRTAVKRIGGFIIVATAVAVLAVLGAVAL
Ga0116223_101660531	3300009839	Peatlands Soil	MSELVTKSVLQEQQEQRIETRTAVKRIAGFTIVATAVAVLAVLGAVVL
Ga0074045_102683281	3300010341	Bog Forest Soil	MSEPVPRSVPQEQRIETRTAVKRIGGFTIVATAVAVLAVLG
Ga0074044_106584871	3300010343	Bog Forest Soil	MSELATKSVAREQQELKIETPAVAERIAVFTIVATAVAVLAVLVAA
Ga0137363_104654931	3300012202	Vadose Zone Soil	MSELVTKSVAQEQPGQKIETRTAAQRVAGFTVVVTAVAV
Ga0137363_109820563	3300012202	Vadose Zone Soil	MSELVTKSVEQEQPEQKIETHTAVEHIPGFTIVATAVA
Ga0137410_115470762	3300012944	Vadose Zone Soil	MSELVTKSVAQEEPGQKIETRTAAQRVAGFTVVVTAVAVLAVLVA
Ga0181532_103457731	3300014164	Bog	MSELVTKSVAQGEQEQKMETRTAVERIAGFTIVATAVAVLAALGAVV
Ga0181532_107153941	3300014164	Bog	MSELVTKFVTQEQRGQKTETRFTTERIGGFTIVATAVAVLAVLVAAALF
Ga0181523_100837483	3300014165	Bog	MPELMTKYVAQEQQEQKVETRSAVGRIAGFTIVATSVSVLSV
Ga0181526_107490911	3300014200	Bog	MPELVTKSVTQEQQEQQEQKIETRTAVERIAPFTIVATAVAVLAVL
Ga0181526_109524882	3300014200	Bog	MSELVTKFVTQEQRGQKTETRSATERIVGFIIVATAVAVLAALV
Ga0181537_104654581	3300014201	Bog	MMPKLVTKSVAQEQQEQKIETRSAMERNAGFTIVA
Ga0182024_113904452	3300014501	Permafrost	MSKLVRKSVPQEQQEQSVKARTAAERTVGFTIVATAVAVLAVLIATAVYAQE
Ga0182024_114494112	3300014501	Permafrost	MSELVTKSVPQEQQEQRIETRTAVKRIGGFTIVAT
Ga0182024_116155972	3300014501	Permafrost	MPELVRKSVAQEQQIEARTAMKRIACFTIVATAVAALAVLVATAVY
Ga0181536_104144312	3300014638	Bog	MSELVTESVLQEQREQRMETRTAVARIAGFALIATAM
Ga0181525_101949661	3300014654	Bog	MSEFVTKSVAQEQQAHKIEKRTAVARIAGFALIATAMAA
Ga0181525_106838002	3300014654	Bog	MSEFVTKSVAQEQQAQKIETRTAVARIAGFALIATATA
Ga0137418_103842712	3300015241	Vadose Zone Soil	MPELVRKSSAQEQPIQKKPIAGFTIGATAVAALAVLL
Ga0187802_101009951	3300017822	Freshwater Sediment	MSEFVTKSVAQEQQEQRIEARTAVGRIGGFTIVATA
Ga0187818_100566171	3300017823	Freshwater Sediment	MSEFVTKSVAQEQQEQRIEARTAVGRIGGFTIVATAVAVLAVLGV
Ga0187824_102549382	3300017927	Freshwater Sediment	MSEPVTKSVPQEPQEQKIETRTAVAGIAGFALIATAMAALAVL
Ga0187849_12084692	3300017929	Peatland	MSELVTKSVPQEQQEQRIETRIAGLTVVATAVAVLAVLG
Ga0187825_101954941	3300017930	Freshwater Sediment	MSEPVTKSVPEEQQEQRIKTRTAVKRIGGFTIVATAVAVLAVLG
Ga0187814_102094371	3300017932	Freshwater Sediment	MSEFVTKSVAQEQQEQRIEARTAVGRIGGFTIVDSRGSA
Ga0187801_104689921	3300017933	Freshwater Sediment	MSEFVTKSVAQEQQEQRIEARTAVGRIGGFTIVATAVAVLAVLGVVVL
Ga0187801_104938521	3300017933	Freshwater Sediment	MSECLTKSVPQEEQEQRINARTAVKRIGGFTIVATAVAVLAVLGVVVLCA
Ga0187853_101142631	3300017940	Peatland	MSELVRKSVAQEQQERKIETRTAVERIAGFTIVATAVAVLAALVA
Ga0187819_105781401	3300017943	Freshwater Sediment	VSELVTKSVAQEQQEQKIETRTTVERIAGFTIVATAVAVLAVLA
Ga0187847_102105892	3300017948	Peatland	MSEFVTKSVPPEQQEQRMGTRIAVKRIGGFTIVATAVAVLAVLG
Ga0187823_101157001	3300017993	Freshwater Sediment	MSEPVTKSVPEEQQEQRIKTRTAVKRIGGFTIVATAVSVFAVVVIL
Ga0187888_12843571	3300018008	Peatland	MSELVTKSVPQEQQEQRIETHIAVKRIGGFTVVATAVAVLAV
Ga0187810_101799033	3300018012	Freshwater Sediment	MPELRPESVAQEQQEQKIKTRSAVERIAGFTIVATAVAVLAV
Ga0187872_102676092	3300018017	Peatland	MSELVTESVPQEQQEQRIETRTAVKRIGGFTIVATAVAVLAVLGVVVLYA
Ga0187861_101351071	3300018020	Peatland	MSELVTKSVPQEQQEQRIETRIAVKRIGGFAIAATAVAVLAVLGA
Ga0187864_103416551	3300018022	Peatland	MSELVTESVPQEQQEQRIETRTAVKRIGGFTIVATAVAVLAVLGVVV
Ga0187869_103759911	3300018030	Peatland	MSELVTKFVTQEQRGQKTETRSTTERIGGFTIVATAVAVLA
Ga0187869_105385511	3300018030	Peatland	MSGLMTKSVAQERKEQQMETRTTVGRIAGFTIVATAVAVLAVLV
Ga0187863_102713131	3300018034	Peatland	MSEFVTKSVAQEQQAQKIETRTAVARIAGFALIATAVAVLGVLGAAALF
Ga0187875_103912972	3300018035	Peatland	MPELMTKYVAQEQQEQKVETRTAVGRIAGFTIVATSVSVLSVLVA
Ga0187883_106954621	3300018037	Peatland	MSELVTKSVAQEQQEQKIGTRTAVERIVGFTIVATAVAVLAVQVAATL
Ga0187855_101404243	3300018038	Peatland	MSELETKLVAQEQEEQKTETGTPVKRIVGFIVIATAVAVL
Ga0187862_101540931	3300018040	Peatland	VSELLRKPVAQEPEHKVKASTAVKRIAGLTIVATAVAVLAVL
Ga0187862_104570662	3300018040	Peatland	MSEPVPRSVPQEQRIETRTAVKRIGGFTIVATAVAVLAVL
Ga0187851_106466161	3300018046	Peatland	VFEVVTKSVPPEQQEQRIGTRIAVKRIGGFTIVAIAA
Ga0187851_108462601	3300018046	Peatland	MPELVTKSVARKQQEQQEQKIETLTAVERIARFTIVATAVAVLSVLV
Ga0187859_105922461	3300018047	Peatland	MSGLVAKSVAREQQEQKIETRTAVDRARFTIVAIAVAV
Ga0210403_115060212	3300020580	Soil	MLEIVTKSVVQEQQEQKIETRTPAERIAGFVIVVTAVA
Ga0210399_113833381	3300020581	Soil	MSGFVTKSVAQGPQEQRIEKRTAVKRIAGLTVVATAV
Ga0210408_114571681	3300021178	Soil	MSEFVTKSVAQEQQEQRIETRTAVKRIGGFTIVATAVAVLAVLGVV
Ga0210388_107933071	3300021181	Soil	MTEPVTESRALEQKKQKTETRHAVKRIACFTIVPTAVAVLAVLGAVVLF
Ga0210393_107994162	3300021401	Soil	MSEFVTKSVAQEQQEQQRIKTRTAVKRIGGVTIVATAVAVLAVLGVVVL
Ga0210393_116046381	3300021401	Soil	MPYPMTESVAQKQRKRKIETRTAVERIAGFTIVATAVLAVLGAAAL
Ga0210385_106828172	3300021402	Soil	MSELLTKSVAKEQQEQKMETRTAVERIADHTIVTTAVTA
Ga0210385_115033791	3300021402	Soil	MSELVTKSVAQEQQEQKITTRTAVKPIARFTIVATAVAML
Ga0210389_103189792	3300021404	Soil	MSELVTKSVPQEQQEQRIETRIAAKRIGGLTVVATAM
Ga0210383_110854231	3300021407	Soil	MSELLTKSVAQERHEQKIEARTAVEHSVGFAIVTIAVAVIAVLGAT
Ga0210391_114021532	3300021433	Soil	MSEFVTKSEAQQQQEQKMEARTTAGRITRFTIVATAIAV
Ga0210390_110978301	3300021474	Soil	MSELVTKSVPQEQQKQKIETRTAMKRIAGFTIGAI
Ga0210398_113430412	3300021477	Soil	MSELVRKSVAQEQEEQKVETRTAVKRIAGFTIATTAVAVLAALVAAAV
Ga0210402_100401665	3300021478	Soil	MSELVTKSVAQEQQEQKIETRTAVERIAGFTIVATAVAVLAVLLGYR
Ga0247664_11673331	3300024232	Soil	MSELVAKSVAQDEQEQKIETPTAVKRIAGFTIVATAIAVL
Ga0224564_10343941	3300024271	Soil	MSELVTKSVAQEQQEQKIEARTTVKRIGGFTMVAAALAV
Ga0224564_10720142	3300024271	Soil	MSELVTKSVAQEQPGQKIETRTAAQRVAGFTVVVTAIA
Ga0208035_10386092	3300025406	Peatland	MSELVTKSVPQEQQEQRIETHIAVKRIGGFTVVATAV
Ga0208937_11261652	3300025506	Peatland	MSELVTKSVPPEQQEQRIGTRIAVKRIGGFTIVATAVAVLAVL
Ga0209055_10379401	3300026309	Soil	MSELVTKSVAQEQPGQKIETRTAAQRVAGFTVVVTAVAVLAVLVA
Ga0257158_10932611	3300026515	Soil	MSELVTKSVAQEQPGQKIETRTAAQRVAGFTVVVTAVAVLA
Ga0209421_10433841	3300027432	Forest Soil	MPERMTKSVAQEQQAQKTETRTAVERIAGFTMVATAVAVLAVLGA
Ga0208199_10496142	3300027497	Peatlands Soil	MEELMTKSVAQEQQEQKREVEPIAGFIIVATAVAVFAVF
Ga0209116_10287052	3300027590	Forest Soil	MSELLTKVVAPEQQEQKTGTRTAARRIAGFTIVAT
Ga0208827_11821201	3300027641	Peatlands Soil	MSELLTKSVPQEQQEQRIETRTAVKRIGGFTIVATAVAVLAVLGAV
Ga0209139_103349631	3300027795	Bog Forest Soil	MSELVTKSGAQEQQKQNIEARTAVKRVGSFPVVATAVA
Ga0209380_104012141	3300027889	Soil	MSGFVTKSVAQEQQAQKIETRTAVERIAGFALIATA
Ga0209624_104777823	3300027895	Forest Soil	MSGFVTKSVAQEQQAQKIETRTAVERIAGFALIATAMA
Ga0209067_102704712	3300027898	Watersheds	MREPGTKSVAQEHQEQKIETHTAVRRIAGFTIVAIATA
Ga0265356_10067763	3300028017	Rhizosphere	MSGFVTKSVAQEQQAQKIETRTAVERIAGFALIAT
Ga0302233_100359013	3300028746	Palsa	VSELLTKSVAQQQQEQKIETRTAVERIAGFTIVATAVAVLAVLVGTAVYA
Ga0302231_104492312	3300028775	Palsa	VSELLTKSVAQQQQEQKIETRTAVERIAGFTIVATAVAVLAVLVGT
Ga0302221_102237692	3300028806	Palsa	VSELLTKSVAQQQQEQKIETRTAVERIAGFTIVATAVAVLAVLVGTAV
Ga0302265_12215621	3300028859	Bog	MPELVTKSVAQEQHEQQEQKIESSAAVKRIVGLTIVATAVAA
Ga0311359_103252853	3300029914	Bog	MSEFLTKSVAQEQQEQRIETRTAVKRIGGFTTVATAVAVLA
Ga0311340_106175972	3300029943	Palsa	MSEFLTKSVAQEQQAKRIETRTAVARIAGFALIATATAVLAVL
Ga0311339_113960562	3300029999	Palsa	MPELVRKSLAQEQQEQKIETRTTMERIPGFTIGATAVAALAVLV
Ga0311370_109805504	3300030503	Palsa	MPELVTKSVAQEQKTETRTSAKRTAGFSILAAAVAVLTVLVGTGFAT
Ga0302194_102581831	3300030506	Bog	MSELMTKSAAQEQQVQKIEPRTAVKRIGGFTAVATAVAVLAVLGA
Ga0311355_105522123	3300030580	Palsa	MPEFTPKSLAQKQQEQLKIETRTAVKRIAGFTIVAAAVA
Ga0311356_100273991	3300030617	Palsa	MPEFTPKSLAQKQQEQLKIETRTAVKRIAGFTIVAAAV
Ga0265762_10604952	3300030760	Soil	MSGFVTKSVAQEQQAQKIETRTAVERIAGFALIATAM
Ga0265760_101821742	3300031090	Soil	MSEFVKKSVAQQQEQKIETRTAMGRIPGFTMVATAV
Ga0170823_163616321	3300031128	Forest Soil	MSELVTKSVAPEQQAQKIETRTAVQRIAGFTIAATAVAALAVL
Ga0302325_118219622	3300031234	Palsa	MFELVTKSVAQERQEQKIEARNALQRIAGFTILATAMAVLAVL
Ga0302325_132048461	3300031234	Palsa	MPERMTKSVTQEPQEQKIETRTAVERIAGFTIVATAVAVLAVLGATAAY
Ga0302320_111616362	3300031524	Bog	MSESATKSVAQEHPEQRIETRSAVKRIASFTIVATAVAVLAVLGAAA
Ga0310686_1077905742	3300031708	Soil	MPEPVTKSVAQEQQEQRIETRAAAERIAGFTIVATA
Ga0310686_1178316292	3300031708	Soil	MSEFVTKSVAQQQEQKIETRTAMGRIPGFTMVATAVAALAVLGVAA
Ga0302319_115496652	3300031788	Bog	MSERVTKSVTQQQQEQKTETRTAVQRVAGFTVVATAV
Ga0307470_118342592	3300032174	Hardwood Forest Soil	MSELVTKSVAQEQQEQKIETRTAVEPIVGFTIVATAVAVLSV
Ga0335080_103905643	3300032828	Soil	MPELVRKIVPQEQRIKRRIAVKRIGGFTIVATAVAVFAVF
Ga0335069_103079324	3300032893	Soil	MSELERKLVPPEQRIKTRIAVKRIGGFTIVATAVAVLGVFGVVILYAQGQD
Ga0335073_100472491	3300033134	Soil	MSELVTKSVPQEQQEQRIETRIAAKRIGGLTVVAT
Ga0334854_067254_2_133	3300033829	Soil	MPELVAESVVQEQQAQKIETRTAVERIAGFTIVAIATAVLAVLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066171

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences