Basic Information | |
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Family ID | F066163 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 127 |
Average Sequence Length | 46 residues |
Representative Sequence | MRSFVFNGITIPVVFKAIRCSRRAQLWNRQASIIMDLTTLALRHG |
Number of Associated Samples | 99 |
Number of Associated Scaffolds | 127 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 78.74 % |
% of genes near scaffold ends (potentially truncated) | 84.25 % |
% of genes from short scaffolds (< 2000 bps) | 82.68 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (74.016 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.961 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.071 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (55.118 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.53% β-sheet: 0.00% Coil/Unstructured: 42.47% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Pfam ID | Name | % Frequency in 127 Family Scaffolds |
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PF12697 | Abhydrolase_6 | 2.36 |
PF07399 | Na_H_antiport_3 | 2.36 |
PF02861 | Clp_N | 2.36 |
PF13377 | Peripla_BP_3 | 0.79 |
PF00561 | Abhydrolase_1 | 0.79 |
PF00239 | Resolvase | 0.79 |
PF13546 | DDE_5 | 0.79 |
PF05728 | UPF0227 | 0.79 |
PF13533 | Biotin_lipoyl_2 | 0.79 |
PF01872 | RibD_C | 0.79 |
PF00881 | Nitroreductase | 0.79 |
PF03413 | PepSY | 0.79 |
PF00291 | PALP | 0.79 |
PF02899 | Phage_int_SAM_1 | 0.79 |
PF08447 | PAS_3 | 0.79 |
PF00216 | Bac_DNA_binding | 0.79 |
PF12833 | HTH_18 | 0.79 |
PF03473 | MOSC | 0.79 |
PF04986 | Y2_Tnp | 0.79 |
PF03150 | CCP_MauG | 0.79 |
PF08463 | EcoEI_R_C | 0.79 |
PF04493 | Endonuclease_5 | 0.79 |
PF12796 | Ank_2 | 0.79 |
PF01738 | DLH | 0.79 |
PF07859 | Abhydrolase_3 | 0.79 |
PF13610 | DDE_Tnp_IS240 | 0.79 |
PF02775 | TPP_enzyme_C | 0.79 |
PF07228 | SpoIIE | 0.79 |
PF00107 | ADH_zinc_N | 0.79 |
PF13857 | Ank_5 | 0.79 |
PF08401 | ArdcN | 0.79 |
PF00072 | Response_reg | 0.79 |
COG ID | Name | Functional Category | % Frequency in 127 Family Scaffolds |
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COG0542 | ATP-dependent Clp protease, ATP-binding subunit ClpA | Posttranslational modification, protein turnover, chaperones [O] | 2.36 |
COG0262 | Dihydrofolate reductase | Coenzyme transport and metabolism [H] | 0.79 |
COG0657 | Acetyl esterase/lipase | Lipid transport and metabolism [I] | 0.79 |
COG0776 | Bacterial nucleoid DNA-binding protein IHF-alpha | Replication, recombination and repair [L] | 0.79 |
COG1515 | Deoxyinosine 3'-endonuclease (endonuclease V) | Replication, recombination and repair [L] | 0.79 |
COG1858 | Cytochrome c peroxidase | Posttranslational modification, protein turnover, chaperones [O] | 0.79 |
COG1961 | Site-specific DNA recombinase SpoIVCA/DNA invertase PinE | Replication, recombination and repair [L] | 0.79 |
COG1985 | Pyrimidine reductase, riboflavin biosynthesis | Coenzyme transport and metabolism [H] | 0.79 |
COG2452 | Predicted site-specific integrase-resolvase | Mobilome: prophages, transposons [X] | 0.79 |
COG4096 | Type I site-specific restriction endonuclease, part of a restriction-modification system | Defense mechanisms [V] | 0.79 |
COG4227 | Antirestriction protein ArdC | Replication, recombination and repair [L] | 0.79 |
COG4973 | Site-specific recombinase XerC | Replication, recombination and repair [L] | 0.79 |
COG4974 | Site-specific recombinase XerD | Replication, recombination and repair [L] | 0.79 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 74.02 % |
All Organisms | root | All Organisms | 25.98 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 14.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 14.17% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 12.60% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 10.24% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 5.51% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 4.72% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.72% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.15% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 3.15% |
Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 3.15% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.15% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 3.94% |
Bulk Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil | 2.36% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.36% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.57% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.57% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 1.57% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.79% |
Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.79% |
Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.79% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.79% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.79% |
Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil | 0.79% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.79% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.79% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.79% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2170459003 | Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm | Environmental | Open in IMG/M |
3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300001661 | Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly) | Environmental | Open in IMG/M |
3300002906 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm | Environmental | Open in IMG/M |
3300002917 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm | Environmental | Open in IMG/M |
3300003368 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 | Environmental | Open in IMG/M |
3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Environmental | Open in IMG/M |
3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
3300005610 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 | Environmental | Open in IMG/M |
3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
3300006057 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012 | Environmental | Open in IMG/M |
3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
3300009520 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG | Environmental | Open in IMG/M |
3300010147 | Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
3300010341 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2 | Environmental | Open in IMG/M |
3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
3300012961 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG | Environmental | Open in IMG/M |
3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
3300017993 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3 | Environmental | Open in IMG/M |
3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
3300020140 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
3300021361 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 | Host-Associated | Open in IMG/M |
3300021372 | Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01 | Environmental | Open in IMG/M |
3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
3300021439 | Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03 | Environmental | Open in IMG/M |
3300021444 | Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02 | Environmental | Open in IMG/M |
3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
3300022502 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
3300024330 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) | Environmental | Open in IMG/M |
3300026319 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes) | Environmental | Open in IMG/M |
3300026508 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A | Environmental | Open in IMG/M |
3300026551 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes) | Environmental | Open in IMG/M |
3300026880 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes) | Environmental | Open in IMG/M |
3300026889 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57 (SPAdes) | Environmental | Open in IMG/M |
3300027039 | Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes) | Environmental | Open in IMG/M |
3300027371 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027583 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027643 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes) | Environmental | Open in IMG/M |
3300027684 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027738 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027825 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) | Environmental | Open in IMG/M |
3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
3300031890 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2) | Environmental | Open in IMG/M |
3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
3300032035 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170 | Environmental | Open in IMG/M |
3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
E4A_02141370 | 2170459003 | Grass Soil | MRSFVFNGITIPVAFKAIRCSRRAQLWNRQASIIIDLTTLTLRHGWHRLPRV |
JGI1027J12803_1014826702 | 3300000955 | Soil | MRSIVSNGITSPVAFKAIRYRRRVQLWNRQASIIKDLTTLTLRH |
JGI1027J12803_1022720571 | 3300000955 | Soil | MRSFTSSSITIPPGFKAIRYSRRVKLWNRQASIIMDLTTLAL |
JGI12053J15887_100571252 | 3300001661 | Forest Soil | MRSIVSNGITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHGRRYLPRV* |
JGI25614J43888_100287304 | 3300002906 | Grasslands Soil | MRXIVSNGITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHERRYLPRV* |
JGI25616J43925_100560191 | 3300002917 | Grasslands Soil | MRSIVSNGITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHERRYLPRV* |
JGI26340J50214_101468503 | 3300003368 | Bog Forest Soil | MRSFVFNDITIPVAFKAICYGRRVQIWNRQASIITDLTTLALRH |
Ga0070710_101577084 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | ESPTMRSLLFKDITIPVAFKAIPYSRRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS |
Ga0070708_1013917681 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLFKDITIPVAFKAIPYSRAQLWNRQASIVTDLTMLAFRHG |
Ga0070706_1004099023 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLLKSITIPVAFKAIRENRRAQLWNRQASIIMDLTMSALRHAAEGITSTGTE |
Ga0070698_10001850610 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLFKHITIPVAFKAITYGRRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS* |
Ga0070698_1000818142 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLFKHITIPVAFKAIPDSRRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS* |
Ga0070762_105279101 | 3300005602 | Soil | MRSFFLKDITIPVAFKATCSRRAQLWNRQASIIMDLTTLALRHGWHS |
Ga0070762_106143531 | 3300005602 | Soil | MRSLPSKDITIPVAFKAIPYSRRAQLWSRQASIVTDLTMLAFRHGW |
Ga0070762_108624182 | 3300005602 | Soil | DITIPVAFKATCSRRAQLWNRQASIIMDLTTLALRHGWHSLPRV* |
Ga0070763_103179361 | 3300005610 | Soil | MRSFVFNGITIPVVFKAIRCSRRAQLWNRQASIIMDLTTLALRHG |
Ga0066903_1089429941 | 3300005764 | Tropical Forest Soil | KHIIIPVAFKAITYSRRAQLWNRQASIVTVLRILAFCHG* |
Ga0070717_100690725 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLPFKDITIPVAFKAIPYSRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS* |
Ga0075026_1010060291 | 3300006057 | Watersheds | MRSFVFNDITIPVAFKATCSRRAQLWNRQASIIMDLTTLALRHGWHS |
Ga0075015_1007902711 | 3300006102 | Watersheds | MRSFAFNHITIPVAFKATRCSRRARLWNRQASIIKDLTTLALRHGWHSLPISVPVLV |
Ga0070715_109653411 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSFVSNGITIPVAFKAIRCSRRAQLWNRQASIIM |
Ga0075018_102676701 | 3300006172 | Watersheds | MRSFVFNGITIPVVFKAIRCSRRAQLWNRQASIIMDLTTLALRHGWH |
Ga0075014_1006639091 | 3300006174 | Watersheds | MRSFVSNDITIPVVFKAIRCSRRAQLWNRQASIIM |
Ga0075425_1012363121 | 3300006854 | Populus Rhizosphere | MRSLLFKDITIPVAFKTIPYSRRAQLWNRQASIVADLTMLAFRH |
Ga0116214_13336811 | 3300009520 | Peatlands Soil | MRSFVFDDITIPIIFKAIRCSRRAQLWNRQASIIMDLTTLALRH |
Ga0126319_14075971 | 3300010147 | Soil | TMRSIVSNGITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHERRYLPRV* |
Ga0074046_102535053 | 3300010339 | Bog Forest Soil | FVFNGITIPVVFKAIRYSRRVQLWNRQASIIMDLTTLALRHRWHSLPRV* |
Ga0074045_109521941 | 3300010341 | Bog Forest Soil | MRSFVFNGTTIPIIFKAIRCSRRAQLWNRQASIIMDLTTLALRHGWRCPPRV |
Ga0074044_104445611 | 3300010343 | Bog Forest Soil | MRSFVFNDVTIPVAFKATCSRRAQLWNRQASIIMDLTTLALRHG |
Ga0074044_105457321 | 3300010343 | Bog Forest Soil | MRSFVSNDITIPIVFKAIRCSRRAQLWNRQASIIMDLTTL |
Ga0126370_118902292 | 3300010358 | Tropical Forest Soil | MRSFVYKTITIPVAFKAIPCSRRAQLWNRQASIMMDLNKVGFRQGWCD |
Ga0126381_1003086411 | 3300010376 | Tropical Forest Soil | MRSLLFKDITIPIAFKAIRCSRRAQLWNRQASIIRDLTKLAFR |
Ga0126381_1003164291 | 3300010376 | Tropical Forest Soil | SLLFKDITIPIAFKAIRCSRRAQLWNRQASIIRDLTKLAFRHRWCGLPI* |
Ga0126381_1028695591 | 3300010376 | Tropical Forest Soil | MRSFVFKSITIPLAFKAIRCSRRAQLWHRQASIIMDLTTLALRHG |
Ga0126381_1037431252 | 3300010376 | Tropical Forest Soil | MRCFVYKNITIRAAFKATPYSRRARLWSQQAGIMMDLNMLGISSGM |
Ga0137362_100519691 | 3300012205 | Vadose Zone Soil | MRSLLLKDITIPVAFKAIPYSRRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS* |
Ga0137362_102070644 | 3300012205 | Vadose Zone Soil | MRSIVSNITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHERRYLPRV* |
Ga0137376_109193442 | 3300012208 | Vadose Zone Soil | ITSPVAFKAIRYRRRVQLWNRQVSIIEDLTTLTLRHERRYLPRV* |
Ga0137379_113247671 | 3300012209 | Vadose Zone Soil | QPITESPTMRSIVSNITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHERRYLPRV* |
Ga0137378_107461411 | 3300012210 | Vadose Zone Soil | MRSFLRNGITTPVVFKAVRCSRRVQLWNRQASIIIDLTTLTLRHGR |
Ga0137360_104321981 | 3300012361 | Vadose Zone Soil | MRSFISDNITIPVAFKAIRYSRRAQLWNRQALIITDLRYVKT* |
Ga0137358_103281722 | 3300012582 | Vadose Zone Soil | MRNFLRNGITTPVVFKAVRCSRRVQLWNRQASIIIDLTTLTLRH |
Ga0137397_106386843 | 3300012685 | Vadose Zone Soil | VSNGITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHERRYLPRV* |
Ga0137397_111479731 | 3300012685 | Vadose Zone Soil | MRSFVFNDITIPVAFKAIRYGRRVQIWNRQASIITDLTTL |
Ga0137394_111147821 | 3300012922 | Vadose Zone Soil | PTMRSFVFNDITIPVAFKAIRYSRRAQLWNRQAAIITDLTTLTLRHRGRCLLRV* |
Ga0137359_107726441 | 3300012923 | Vadose Zone Soil | MRSLLFKDITIPVAFKAIPDSRRAQLWNRQASIVTDLTMLAFRHG |
Ga0137359_116592931 | 3300012923 | Vadose Zone Soil | MRSFVFNDITIPVAFKAIRYGRRVQIWNRQASIIT |
Ga0164302_115402321 | 3300012961 | Soil | MRSFVSKGITSPVVFKAIGFSRRVQLWNRQASIIIDLTTLALRHGWRCLPRV |
Ga0163162_123873851 | 3300013306 | Switchgrass Rhizosphere | MRSFASNGITTPVVFKAVRHSRRVKLWNRQASIIMDLTT |
Ga0181523_100123019 | 3300014165 | Bog | MRGLLPKNIILPIAFKAIRESRRAQLWNRQASIITDLTILALRQVAGRHHEHRC* |
Ga0182041_112461881 | 3300016294 | Soil | MRSFVPKCIIIPAAFKAIRSSRRAQLWNRQASIIKDLTTLALRHGWYT |
Ga0182041_120946312 | 3300016294 | Soil | MRSLPSKTITYRLAFKAIPYSRRAQLWNRQASIVTDLTMLAFRHGWY |
Ga0182032_105896922 | 3300016357 | Soil | MRSFVVNCITIPVAFKAIRCKRRAQLWNRQASIIIDLTTVALRHGW |
Ga0182034_120893161 | 3300016371 | Soil | MRSFVFNYIIIPAAFKTIRCKRRAQLWNRQASIIIDLNTVAL |
Ga0182037_107341952 | 3300016404 | Soil | MRSFVPKCIIIPAAFKAIRSSRRAQLWNRQASIIKDLTTLALRHGWY |
Ga0182039_106939692 | 3300016422 | Soil | MRSFVCKTITIPVAFKAIPCNRRAQLWNRQASIMMDLNKLGFRQGWCDLP |
Ga0182039_113126791 | 3300016422 | Soil | MRSLLFKDITIPVAFKTIPYSRRAQLWNRQASIITDLTTLALRHG |
Ga0182038_103401382 | 3300016445 | Soil | MRSFVVNCTTIPVGFKAIRCKRRAQLWSRQASIIIELT |
Ga0187823_103301851 | 3300017993 | Freshwater Sediment | MRSFVFNDITIPLAFKATCSRRAQLWNRQASIIMDLT |
Ga0187804_105206141 | 3300018006 | Freshwater Sediment | MRSFVFNGITIPVVFKAIRCSRRSELWDRQASIIMDLTTL |
Ga0187871_104863352 | 3300018042 | Peatland | MRGLLPKDIILPIAFKAIRESRRAQVWNRQASIITDLTILALRQVAG |
Ga0179590_11286311 | 3300020140 | Vadose Zone Soil | GITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHGRRYLPRV |
Ga0179592_100907021 | 3300020199 | Vadose Zone Soil | VVFEAVRCSRRVQLWNRQASIIIDLTTLTLRHKGSCLPRV |
Ga0210407_100228153 | 3300020579 | Soil | MRSFVFNGITIPVAFKAIRCSRRAQLWNRQASIIIDLTTLALRHGWHRLPRV |
Ga0210407_110527921 | 3300020579 | Soil | MRSFVFNGITIPVAFKAIRCSRRAQLWNRQASIIIDLTTLALRHGWHR |
Ga0210403_106170232 | 3300020580 | Soil | LTMKRLLLKDITIPVAFKAIPYSRRAQLWNRQASIVTDLTMLAFRHGWCCLPISAMRS |
Ga0210401_100905341 | 3300020583 | Soil | NGITIPVAFKAIRCSRRAQLWNRQASIIIDLTTLALRHGWHRLPRV |
Ga0210408_103487914 | 3300021178 | Soil | MRSLLLKSITILKAIRESRRAQLWNRQASIIMDLTVLALRHAAEGITSTGTETGRRGL |
Ga0210388_101241612 | 3300021181 | Soil | MRSFVSNGITIPVAFKAIRCSRRAQLWNRQASIIIDLTTLALRHGWHR |
Ga0213872_102650491 | 3300021361 | Rhizosphere | MRSLLLEDITIPIAFKAIRCGRRAQLWNRQASIIRDLTKLAFRHGWCC |
Ga0213877_100001631 | 3300021372 | Bulk Soil | MRDLLREYITLPIAFKAIRESRRAQLWNRQASIIMDLTALAFRR |
Ga0210384_118138462 | 3300021432 | Soil | MRSFAFNHITIPVAFKATRCSRRARLWNRQASIIKDLTTLA |
Ga0213879_102030751 | 3300021439 | Bulk Soil | MRGLPRKHITLAVAFKAIRESRRAQLWNRQASIIMDLTMLACRRVAGKHQ |
Ga0213878_100219822 | 3300021444 | Bulk Soil | MRGLLRKYIILPVAFKAIRESRRTQLWNRQASIIVDLTMLASRQVPAKRHDQRYL |
Ga0210398_110117951 | 3300021477 | Soil | MRSFVFNDITIPVAFKATCSRRAQLWNRQASIIMDLTTLALRHGWHSLP |
Ga0210410_108572781 | 3300021479 | Soil | MRSFVFNGITIPVAFKAIRCGRRAQLWNRQASIIIDLT |
Ga0126371_103721383 | 3300021560 | Tropical Forest Soil | MRSFVLNCITIPVAFKAIRCKRRAQLWKRQASIIIDLTTVAL |
Ga0242646_10305992 | 3300022502 | Soil | MRSLLFKDIAIPVVFKAIPYSRRAQLWNRQASTIADLT |
Ga0137417_13394972 | 3300024330 | Vadose Zone Soil | ITNPVASKAIRYRRRVQLWNRQVSIIKDLTTLILRHERRYLPRV |
Ga0207692_103197681 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLFKDIAIPVVFKAIPYSRRAQLWNRQASTIADLTTLALRHGWRCLPISDLC |
Ga0207692_111829652 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSFVSNGITIPVVFKAIPHSRRAQLWNRQASITVELTTLAL |
Ga0207699_101908442 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLFKDIAIPVVFKAIPYSRRAQLWNRQASTIADLTTLAL |
Ga0207684_114592841 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSFVFKCITIPVALKAIRCSRRAELWSRQASIIMDLTTLAIRH |
Ga0207646_100540571 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLLFKHITIPVAFKAITYGRRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS |
Ga0207646_105834021 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MRSLVSNGIISPVVFKAIRCSRRVKLWNRQASIIRDLTTLALRHEERCLP |
Ga0209647_10069327 | 3300026319 | Grasslands Soil | MRSFDSKGITSPVVFKAIGFSRRVQLWNRQASIIMDLTTLALRHGWRCLPRV |
Ga0209647_10166853 | 3300026319 | Grasslands Soil | MRSFLRNGIITPVVFKAVRCSRRVQLWNRQASIIIDLTALTLRHKGRCLPRV |
Ga0257161_10240682 | 3300026508 | Soil | MRSFVPKDITIPVVFKAIRYRRRVQLWNRQASIIMDLTTLALRHGWR |
Ga0209648_100124439 | 3300026551 | Grasslands Soil | MRSIVSNGITSPVAFKAIRYRRGVQLWNRQVSIIKDLTTLTLRHERRYLPRV |
Ga0209623_10098771 | 3300026880 | Forest Soil | MRSFLRNGITTPVVFKVIRCNRRVQLWNRQASIIMDLTTLALRH |
Ga0207745_10083492 | 3300026889 | Tropical Forest Soil | MRSFLFNGITNPVVFKAIPCSRRAQLWNRQASIIMDLTTLALRH |
Ga0207855_10419381 | 3300027039 | Tropical Forest Soil | MRSFLFNGITIPVVFKAIPCSRRAQLWNRQASIIMDLTTLALRH |
Ga0209418_10156793 | 3300027371 | Forest Soil | MRSFVPNCITIPGGFKAIRCKRHAQLWNRQASIIIDLTAVA |
Ga0209527_10279251 | 3300027583 | Forest Soil | MRSFVFNDITIQVAFKASCSRRAQLWNRQASIIMDLTTLAL |
Ga0209076_12280661 | 3300027643 | Vadose Zone Soil | MRSIVSNGITSPVAFKAIRYRRRVQLWNRQVSIIKDLTTLTLRHER |
Ga0209626_10040053 | 3300027684 | Forest Soil | MRSFLRNGITTPVVFKVIRCNRRVQLWNRQASIIMDLTTLALRHGWHSLPRV |
Ga0208989_100926011 | 3300027738 | Forest Soil | MRSIVSNGITNPVASKAIRYRRRVQLWNRQVSIIKDLTTLTLRHGRRYLPRV |
Ga0209656_100013806 | 3300027812 | Bog Forest Soil | MRSFVFNDITIPVAFKATCSRRAQLWNRQASIIMDLTTLALRHGWRRLPISALRS |
Ga0209656_101109281 | 3300027812 | Bog Forest Soil | MRSFVFNDITIPIVFKAIRCSRRAQLWNRQASIIMDLTTLALRHGWRCPP |
Ga0209040_101438581 | 3300027824 | Bog Forest Soil | MRSFVCNDITIPVAFKAICYGRRVQIWNRQASIIADLTTLALRHG |
Ga0209040_101707243 | 3300027824 | Bog Forest Soil | MRSFVFNDITIPVVFKAIRCSRRAQLWNRQASIIMDLTTLALR |
Ga0209039_102640912 | 3300027825 | Bog Forest Soil | MRGLLPKDIIIPVTFKTIRESRRAPLWDRQASIITDLTMLALRQAAGR |
Ga0209526_100354942 | 3300028047 | Forest Soil | MRSFLRNGITTPAVFKAVRCSRRVQLWNRQASIIIDLTTLTLRHKGRFLPRV |
Ga0170824_1040298131 | 3300031231 | Forest Soil | FVFNGITIPVAFNAIRCSRRAQLWNRQASIIIDLTALALRHGWHRLPRV |
Ga0170818_1025682971 | 3300031474 | Forest Soil | MRSFVFNGITIPVAFKAICCSRRAQLWNRQASIIMDLTT |
Ga0310915_102256792 | 3300031573 | Soil | MRSFVVNCITIPGGFKAIRCKRRAQLWNRQASIIIVL |
Ga0306917_103423042 | 3300031719 | Soil | MRSFVVNCITIPVAFKAIRCKRRAQLWNRQASIIIDLTTV |
Ga0307475_110964881 | 3300031754 | Hardwood Forest Soil | MRSLFIKTIIFPTAFKTIRCARRAQLWGRQAWIIIGLSKL |
Ga0307475_112174801 | 3300031754 | Hardwood Forest Soil | MRSFDSKGITSPVVFKAIGFSRRVQLWNRQASIIMDLTTLALRHGWRCLP |
Ga0307473_103839311 | 3300031820 | Hardwood Forest Soil | KDITIPVAFKAIPYSRRAQLWNRQASIVTDLTMLAFRHGWYWLPISALRS |
Ga0306919_108117352 | 3300031879 | Soil | MRSFVFNYIIIPAAFKTIRCKRRAQLWNRQASIIIDLNTVALRHGWHCPPRV |
Ga0306925_104162291 | 3300031890 | Soil | MRSFVVNCITIPGGFKAIRCKRRAQLWNRQASIIIDLTAVA |
Ga0306925_104212413 | 3300031890 | Soil | MRSFVVNCITIPVGFKAIRCKRGAQLWNRQASIIIDLTIVALRR |
Ga0306925_112050701 | 3300031890 | Soil | MRSFVFYRITFPVALKAIRCSRRAQLWNRQASIVMDL |
Ga0306925_116848261 | 3300031890 | Soil | MRSFVFNYIIIPAAFKTIRCKRRAQLWNRQASIIIDLTTVALR |
Ga0306925_119414301 | 3300031890 | Soil | MRSFVSNNITIPVAFKAIRCSRRAQLWNRQAWIIIDLTARALRHGWH |
Ga0318520_108073621 | 3300031897 | Soil | IIIPAAFKAIRSSRRAQLWNRQASIIKDLTTLALRHGWYTLPLV |
Ga0306923_101215982 | 3300031910 | Soil | MRSSFCNYITIPVAFKAAGSKRHAQLWNRQASIIVELTTVALRHGWHCPPRV |
Ga0310916_115850822 | 3300031942 | Soil | MRSFYVNCITIPGGFKAIRCKRRAQLWNRQASIIIDLT |
Ga0310911_104938632 | 3300032035 | Soil | MRSFVVNFITIPAAFKTVRCKRRAQLWSRQASIIIELTT |
Ga0307470_115478011 | 3300032174 | Hardwood Forest Soil | MRSFVFNGITIPVAFKAIRCSRRAQLWNRQASIVIDLTTLALRHGWHRLSRV |
Ga0306920_1002329433 | 3300032261 | Soil | MRSFVFNNITTPVAFKAIRCSRRAQLWNRQAWIIMDLTALALRHGWHSLSRV |
Ga0306920_1030229122 | 3300032261 | Soil | MRSFVFKFNTIPVAFKAIRCSRRAQLWHRQASIIMDLTTLAV |
Ga0310914_101987831 | 3300033289 | Soil | MRSFVVNCITIPVAFKAIRCKRRAQLWNRQASIIIDLTTVALRHGWH |
Ga0310914_104998202 | 3300033289 | Soil | MRSFVVNFITVPAAFKTVRCKRRAQLWNRQASIIIELTTAALRHGWH |
Ga0310914_106032551 | 3300033289 | Soil | ITESPTMRSFVVNSITIPIGFKAIRCKRGAQLWNRQASIVIDLTTVALRHGWHYPPRV |
Ga0310914_116653681 | 3300033289 | Soil | MRSLLFKDITIPVAFKTIPYSRRAQLWNRQASIITDLTTLALRHGWHCL |
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