Metagenome / Metatranscriptome Family F066101

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066101
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	77 residues
Representative Sequence	VTADRFDRFLPLAGVLIGLLFFVGLALTWGDPSSETSPTETFSYWHDNRGQHQISGLLLAPLVAFLLVFFGAGL
Number of Associated Samples	106
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.70 %
% of genes near scaffold ends (potentially truncated)	98.43 %
% of genes from short scaffolds (< 2000 bps)	95.28 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.339 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.835 % of family members)
Environment Ontology (ENVO)	Unclassified (26.772 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.819 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.90% β-sheet: 0.00% Coil/Unstructured: 45.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00196	GerE	12.60
PF01887	SAM_HAT_N	3.15
PF13581	HATPase_c_2	2.36
PF07883	Cupin_2	1.57
PF10502	Peptidase_S26	1.57
PF00561	Abhydrolase_1	1.57
PF00374	NiFeSe_Hases	0.79
PF03625	DUF302	0.79
PF14329	DUF4386	0.79
PF04679	DNA_ligase_A_C	0.79
PF02518	HATPase_c	0.79
PF00753	Lactamase_B	0.79
PF13417	GST_N_3	0.79
PF08386	Abhydrolase_4	0.79
PF14213	DUF4325	0.79
PF13492	GAF_3	0.79
PF07366	SnoaL	0.79
PF07676	PD40	0.79
PF12773	DZR	0.79
PF13650	Asp_protease_2	0.79
PF03861	ANTAR	0.79
PF00430	ATP-synt_B	0.79
PF07731	Cu-oxidase_2	0.79
PF00005	ABC_tran	0.79
PF00589	Phage_integrase	0.79
PF07722	Peptidase_C26	0.79
PF00486	Trans_reg_C	0.79
PF00535	Glycos_transf_2	0.79
PF13493	DUF4118	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	3.15
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	0.79
COG0711	FoF1-type ATP synthase, membrane subunit b or b'	Energy production and conversion [C]	0.79
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.79
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.79
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	0.79
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.79
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.34 %
Unclassified	root	N/A	8.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.34 %
Unclassified	root	N/A	8.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.34 %
Unclassified	root	N/A	8.66 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	84.25 %
Unclassified	root	N/A	8.66 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.79 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	81.89 %
Unclassified	root	N/A	8.66 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	63.78 %
Unclassified	root	N/A	8.66 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6.30 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.79 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	58.27 %
Unclassified	root	N/A	8.66 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6.30 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.94 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.27 %
Unclassified	root	N/A	8.66 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	5.51 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	3.15 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.79 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.27 %
Unclassified	root	N/A	8.66 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	5.51 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	3.15 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.79 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.27 %
Unclassified	root	N/A	8.66 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	5.51 %
unclassified Microbacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium	3.15 %
Cellulomonas fimi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas fimi	0.79 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	58.27 %
Unclassified	root	N/A	8.66 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	5.51 %
Microbacterium sp. SS28	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. SS28	3.15 %
Cellulomonas fimi ATCC 484	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas fimi → Cellulomonas fimi ATCC 484	0.79 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.79 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.79 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2287305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	730	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10659358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	629	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13980962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	909	Open in IMG/M
3300000881\|JGI10215J12807_1161008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	667	Open in IMG/M
3300000881\|JGI10215J12807_1236312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	701	Open in IMG/M
3300000956\|JGI10216J12902_102977101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1268	Open in IMG/M
3300001213\|JGIcombinedJ13530_102435280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	549	Open in IMG/M
3300003993\|Ga0055468_10005084	All Organisms → cellular organisms → Bacteria	2192	Open in IMG/M
3300003997\|Ga0055466_10007568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1975	Open in IMG/M
3300004114\|Ga0062593_100615993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1039	Open in IMG/M
3300004114\|Ga0062593_102135739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300004156\|Ga0062589_100099541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1845	Open in IMG/M
3300004479\|Ga0062595_101458620	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300004480\|Ga0062592_101172972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300005178\|Ga0066688_10180053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1335	Open in IMG/M
3300005341\|Ga0070691_10574924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. SS28	662	Open in IMG/M
3300005364\|Ga0070673_102300664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	512	Open in IMG/M
3300005456\|Ga0070678_100337379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1292	Open in IMG/M
3300005526\|Ga0073909_10492876	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005526\|Ga0073909_10592949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300005535\|Ga0070684_100805523	Not Available	878	Open in IMG/M
3300005546\|Ga0070696_101858623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300005549\|Ga0070704_100748251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300005577\|Ga0068857_101505987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	656	Open in IMG/M
3300005719\|Ga0068861_101330977	Not Available	699	Open in IMG/M
3300005844\|Ga0068862_102265418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300005844\|Ga0068862_102527976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	525	Open in IMG/M
3300006038\|Ga0075365_10731063	All Organisms → cellular organisms → Bacteria → Terrabacteria group	699	Open in IMG/M
3300006046\|Ga0066652_102101040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300006172\|Ga0075018_10540521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	612	Open in IMG/M
3300006797\|Ga0066659_10245596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1337	Open in IMG/M
3300006844\|Ga0075428_101756973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	646	Open in IMG/M
3300006845\|Ga0075421_102500069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	538	Open in IMG/M
3300006918\|Ga0079216_10591440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	761	Open in IMG/M
3300009137\|Ga0066709_101528559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	961	Open in IMG/M
3300009148\|Ga0105243_10518389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300009148\|Ga0105243_11636520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300009176\|Ga0105242_10626585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1043	Open in IMG/M
3300009789\|Ga0126307_10396292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1113	Open in IMG/M
3300009789\|Ga0126307_10726853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	801	Open in IMG/M
3300009817\|Ga0105062_1062934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	695	Open in IMG/M
3300009840\|Ga0126313_10605923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	883	Open in IMG/M
3300010036\|Ga0126305_11067445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300010037\|Ga0126304_10383459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M
3300010037\|Ga0126304_10793415	Not Available	642	Open in IMG/M
3300010039\|Ga0126309_10010187	All Organisms → cellular organisms → Bacteria	3834	Open in IMG/M
3300010039\|Ga0126309_10278944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300010039\|Ga0126309_10479824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	761	Open in IMG/M
3300010040\|Ga0126308_10965558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300010042\|Ga0126314_10352236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1056	Open in IMG/M
3300010999\|Ga0138505_100021232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	834	Open in IMG/M
3300011003\|Ga0138514_100124631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	567	Open in IMG/M
3300011119\|Ga0105246_11361235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300012022\|Ga0120191_10104087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	591	Open in IMG/M
3300012173\|Ga0137327_1039322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1024	Open in IMG/M
3300012350\|Ga0137372_10112857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2262	Open in IMG/M
3300012354\|Ga0137366_11132145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300012469\|Ga0150984_106739830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300012680\|Ga0136612_10247220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	906	Open in IMG/M
3300012911\|Ga0157301_10466615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
3300012941\|Ga0162652_100102856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300012951\|Ga0164300_10892076	Not Available	561	Open in IMG/M
3300012955\|Ga0164298_11022222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. SS28	612	Open in IMG/M
3300012958\|Ga0164299_10226076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1101	Open in IMG/M
3300012958\|Ga0164299_11354474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300012984\|Ga0164309_11258118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	624	Open in IMG/M
3300012987\|Ga0164307_11485774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300014254\|Ga0075312_1011150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1507	Open in IMG/M
3300014254\|Ga0075312_1036133	Not Available	908	Open in IMG/M
3300015077\|Ga0173483_10956579	Not Available	509	Open in IMG/M
3300015373\|Ga0132257_102442651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300018028\|Ga0184608_10144886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1021	Open in IMG/M
3300018073\|Ga0184624_10118853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1144	Open in IMG/M
3300018073\|Ga0184624_10288512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas fimi → Cellulomonas fimi ATCC 484	736	Open in IMG/M
3300018074\|Ga0184640_10449038	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300018081\|Ga0184625_10191942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1070	Open in IMG/M
3300018081\|Ga0184625_10401269	Not Available	707	Open in IMG/M
3300018081\|Ga0184625_10520868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300018082\|Ga0184639_10506846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300018429\|Ga0190272_10356615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1168	Open in IMG/M
3300018469\|Ga0190270_13470276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300018476\|Ga0190274_11306439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	812	Open in IMG/M
3300019263\|Ga0184647_1031212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300019356\|Ga0173481_10380985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300022756\|Ga0222622_11093221	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300023266\|Ga0247789_1028940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	962	Open in IMG/M
3300023266\|Ga0247789_1068974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300025313\|Ga0209431_11114715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300025314\|Ga0209323_10523488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	686	Open in IMG/M
3300025911\|Ga0207654_11427479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300025929\|Ga0207664_10636969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	958	Open in IMG/M
3300026028\|Ga0208420_1021380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300026089\|Ga0207648_10350872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1330	Open in IMG/M
3300026121\|Ga0207683_10378523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1301	Open in IMG/M
3300026121\|Ga0207683_10810231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. SS28	869	Open in IMG/M
3300026331\|Ga0209267_1091005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1307	Open in IMG/M
3300027379\|Ga0209842_1017542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1394	Open in IMG/M
3300027560\|Ga0207981_1092846	Not Available	556	Open in IMG/M
3300027647\|Ga0214468_1159218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300027873\|Ga0209814_10271522	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300028596\|Ga0247821_10957641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300028708\|Ga0307295_10227406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300028711\|Ga0307293_10016209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	2144	Open in IMG/M
3300028717\|Ga0307298_10026394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1528	Open in IMG/M
3300028719\|Ga0307301_10029920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1629	Open in IMG/M
3300028720\|Ga0307317_10155782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
3300028721\|Ga0307315_10034036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1373	Open in IMG/M
3300028755\|Ga0307316_10087924	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300028787\|Ga0307323_10073443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1217	Open in IMG/M
3300028787\|Ga0307323_10083804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1138	Open in IMG/M
3300028787\|Ga0307323_10248455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	641	Open in IMG/M
3300028791\|Ga0307290_10235930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	670	Open in IMG/M
3300028875\|Ga0307289_10016921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2800	Open in IMG/M
3300028878\|Ga0307278_10323801	Not Available	680	Open in IMG/M
3300028878\|Ga0307278_10433904	Not Available	576	Open in IMG/M
3300028884\|Ga0307308_10408652	Not Available	651	Open in IMG/M
3300028889\|Ga0247827_11223087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300031091\|Ga0308201_10017474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1449	Open in IMG/M
3300031092\|Ga0308204_10065375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	924	Open in IMG/M
3300031731\|Ga0307405_11615872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300031938\|Ga0308175_100437418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1376	Open in IMG/M
3300031995\|Ga0307409_101451374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	713	Open in IMG/M
3300031996\|Ga0308176_10420335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1339	Open in IMG/M
3300032000\|Ga0310903_10457244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. SS28	660	Open in IMG/M
3300032002\|Ga0307416_100057962	All Organisms → cellular organisms → Bacteria	3137	Open in IMG/M
3300032002\|Ga0307416_103353224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300032126\|Ga0307415_100459946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1102	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.31%
Host-Associated	Host-Associated	19.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.72%
Plants	Host-Associated → Plants	19.68%
Aquatic	Environmental → Aquatic	12.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.81%
Sediment	Environmental → Aquatic → Sediment	8.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.09%
Marine	Environmental → Aquatic → Marine	2.36%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.36%
Freshwater	Environmental → Aquatic → Freshwater	1.57%
Roots	Host-Associated → Plants → Roots	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.66%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.36%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.36%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.36%
Sand	Environmental → Terrestrial → Soil → Sand	1.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.79%
Ice	Environmental → Aquatic → Freshwater → Ice	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.79%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.24%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.30%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.36%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.57%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.79%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.79%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.79%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.79%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.30%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.36%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.36%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.57%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.79%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.79%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.79%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.79%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.79%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012173	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT517_2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025314	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026028	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_22873052	3300000033	Soil	VSRDPHERSYVPQDRFARFLPLAGVLAGLLLAGGLTLTFSIPSSETSFDETFSWWQDNRGQHQISGLLLAPLVALMLI
ICChiseqgaiiFebDRAFT_106593582	3300000363	Soil	MESNRFDRFLPLAGVLAGLLLAAGLALTYSIPNSETSFDETFLWWQDNRGEHQISGLLLAPLVAVMLIFFG
ICChiseqgaiiFebDRAFT_139809621	3300000363	Soil	VLVSDRFDRFLPIAGVLAGLLVFVGLILLWDDPSSETGPAETFAYWQDDRGQHQIVALLVAPLIAFLLLFVGAGLR
JGI10215J12807_11610081	3300000881	Soil	VVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLL
JGI10215J12807_12363121	3300000881	Soil	VVSDRFDRFLPLAGVLAGLLFGAAFIVDRNDPSTETGPAETLSYWQDNRGIHQIVGLLLLPLIAFLL
JGI10216J12902_1029771011	3300000956	Soil	MMSDRFDRFLPLAGVLAGLLFFVGLALMRNDPSSETGPAQTFSYWQADHGRHQIVALLVAPLIAFLLVFFGAG
JGIcombinedJ13530_1024352801	3300001213	Wetland	MESNRFDRFLPLAGVLAGLLLAGGLTLTFSIPSSETSFDETFSWWQDNRGQHQISGLLLAPLVALM
Ga0055468_100050841	3300003993	Natural And Restored Wetlands	MSADRFDRFLPLAGALAGVLFIAGLIVLRNDPPSESDVAATFDYWATDTGRHRIVAMILSPLMGFLLIFFAAGI
Ga0055466_100075681	3300003997	Natural And Restored Wetlands	MPSTRFERFQPLAGVLSGLLLIAGLALTWGDPSSETGIDDTFSYWADNRGQHQLSGLLLAPLIAFLLVFFGTGLRRHLRH
Ga0062593_1006159931	3300004114	Soil	VVSDRFDRFLPLAGVLAGLLFGAAFIVDRNDPSTETGPAETLSYWQDNRGIHQIVGLLLLPLIAFLLTFFG
Ga0062593_1021357392	3300004114	Soil	VVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFG
Ga0062589_1000995415	3300004156	Soil	VVSDRFDRFLPLAGVLAGLLFGAAFIVDRNDPSTETGPAETLSYWQDNRGIHQIVGLLLLPLI
Ga0062595_1014586201	3300004479	Soil	VPSDRFDRFLPFAGLLLGLLFLVGLVLLRNDPSSETGVAKTFSYWHDNRGQHQIIALLVTPLIAFLL
Ga0062592_1011729721	3300004480	Soil	VVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLKRRLEQGSGDAGHG
Ga0066688_101800533	3300005178	Soil	VASSRFDRFLPLAGVLAGLLLLAGLVLLRDDPSSETGPAATFSYWQADHGQHQIIGLVVAPLIAFLLLFFGAGLKRR
Ga0070691_105749241	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	VVSDRFDRFLPIAGVLAGLLFFVGLVLLWNDPASETGPAETFAYWQDNHGQHQIVAILVAPLI
Ga0070673_1023006641	3300005364	Switchgrass Rhizosphere	VPSDRFARFLPLAGVLAGLLLIGGLTLSWSIPSSETSFEETFSWWQDNRGQHQISGLLLAPLVALMLIFFGSGLQR
Ga0070678_1003373792	3300005456	Miscanthus Rhizosphere	VRSDRFDRFLPFAGVLIGLLFLVALVLLRNDPSSETGVAKTFAYWHDNRGQHQIIALLITPLVAFLLIFFGAGLRRRLAT
Ga0073909_104928761	3300005526	Surface Soil	VRSDRFDRFLPFAGVLIGLLFLVALVLLRNDPSSETGVAKTFAYWHDNRGEHQIIALLITPLVAFLLIFFGAGLRRRLATG
Ga0073909_105929491	3300005526	Surface Soil	VISDRFDRLLPFAGVLAGFLFFVGLLLNRSDPSSETGPADTFSYWHENRGRHQIVGLLVAPLIAFLLVFFATGLRRW
Ga0070684_1008055233	3300005535	Corn Rhizosphere	MVANRFDRVLPLAGVLAGLLFFVGLFLNRSDPSSETGPAETFAYWHADHGRHQIVALLVAPLIAFLLIFFGTGLKRRLERNNDSGY
Ga0070696_1018586231	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VVSDRFDRLLPLAGVLAGLLFGAAFIVDWNHPKAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFLGAGLKRRLEQGSGDAG
Ga0070704_1007482511	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VAPIERKRVRSDRFDRFLPFAGVLIGLLFLVALVLLRNDPSSETGVAKTFAYWHDNRGQHQIIALLITPLVAFLLI
Ga0068857_1015059872	3300005577	Corn Rhizosphere	MLASNRFERLLPLAGALVGLLFFVGLALTWGDPSSETSPSATFSYWHDNRGQHQISGLLLAPLIAFLLVFFGAGLQRGLRVGSRDSSYGAVAFGG
Ga0068861_1013309772	3300005719	Switchgrass Rhizosphere	VVSDRFDRFLPLAGVLAGLLIGAAFILDRNHPHAEAGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGL
Ga0068862_1022654181	3300005844	Switchgrass Rhizosphere	VVSDRFDRFLPIAGVLAGLLFFVGLALLWNDPASETGPAETFAYWQDNHGQHQIVAILVAPLIAFFLLFFGVALWRRLAQGDGDG
Ga0068862_1025279762	3300005844	Switchgrass Rhizosphere	VPSDRFARFLPLAGVFAGLLLAGGLTLTYSIPNSETSFDKTFAWWQDDRGLHQISGLLLAPLVALMLIFFGTGLQRSLRN
Ga0075365_107310631	3300006038	Populus Endosphere	MPSTRFERFQPLAGVLSGLLLIAGLALTWGDPSSATGIDETFSYWADNRGQHQISGLLLAPLIAFLLVFS
Ga0066652_1021010401	3300006046	Soil	VTSNRFDRFLPLAGVLAGLLLLAGLVLLRDDPSSGTGPAETFSYWQADHGKHQIIGLIVAPLIAFLLLFFGA
Ga0075018_105405211	3300006172	Watersheds	MVSDRFDRFLPLAGVLAGLLFVVGLVLNRTDPSSETGPLETFTYWHSNHGQHQIVGLLVAPLIAFLLLVFGAALK
Ga0066659_102455961	3300006797	Soil	VASSRFDRFLPLAGVLAGLLLLAGLVLLRDDPSSETGPAATFSYWQADHGQHQIIGLVVAPLIAFLLLFFGAGLKRRLERGEGDSAHGSVAF
Ga0075428_1017569732	3300006844	Populus Rhizosphere	MVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLKRRL
Ga0075421_1025000691	3300006845	Populus Rhizosphere	VRSDRFARFLPFAGALAGLIFLTGLLVFRNDPPSESDVTATFEYWQNDRGQHQIVALILTPLMGFLLLFYG
Ga0079216_105914401	3300006918	Agricultural Soil	VVTDRFDRFLPLAGVLAGLIFVAGLILLWDDPPSEAAVAETFSYWQDNRGRHQIIALLLTPLIAFLLIFFGAGLRRRLE
Ga0066709_1015285592	3300009137	Grasslands Soil	VASDRFDRFLPLAGVLAGLLLLTGLVVLRDDPSSETGPAETFSYWQADHGKHQIIGLILAPLIAFLLVFFGAGLKRRLGDAIRY
Ga0105243_105183892	3300009148	Miscanthus Rhizosphere	VVSDRFDRFLPIAGVLAGLLFFVGLALLWNDPASETGPAETFAYWQDNHGQHQIVAILVAPLIAFFLLFFGVALWRRLA
Ga0105243_116365202	3300009148	Miscanthus Rhizosphere	VAPIERKRVRSDRFDRFLPFAGVLIGLLFLVALVLLRNDPSSETGVAKTFAYWHDNRGQHQIIALLITPLVAFLLIFFG
Ga0105242_106265852	3300009176	Miscanthus Rhizosphere	VVSDRFDRFLLAGALAGLMFFVALVLLWEDPSSETGPTFAYWQDDRGQHQIVTLLVAPLIAFFLLFFAAGLR
Ga0126307_103962922	3300009789	Serpentine Soil	VTADRFDRFLPLAGALIGALFFAGLALTWGDPSSETAPAETFSYWQENRGRHQISGLLLAPLIAFLLVFFGAG
Ga0126307_107268531	3300009789	Serpentine Soil	VSDRFERFLPLAGLLAGIVFLAGLLVFRNDPPSESDVAATFEYWQNDRGQHQIVALILTPLIGFLLIFFG
Ga0105062_10629341	3300009817	Groundwater Sand	VNAYRFDRLLPLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWQDNRGQHQISGLLLAPMIAFLLVFFGAGL
Ga0126313_106059231	3300009840	Serpentine Soil	LSRDEHASTASEGRFERLLPLAGVAAGVLLIGGLGLTWGDPSSETSPAETFAYWADHRGRHQLSGLLLAPLVAFLLVFFGTGLRRALRSPARDDT
Ga0126305_110674452	3300010036	Serpentine Soil	MSDRFDRFLPLAGVLAGLLLAAGLTLTYSIPNSETAFGETFSWWQDNRGQHQISGLLLAPLVALMLVCFGAGLKRSLRHD
Ga0126304_103834591	3300010037	Serpentine Soil	VSDRFGRFLPLAGLLAGIVFLAGLLVFRNDPPSESDVAATFEYWQNDRGQHQIVALILTPLIGFLLIFFGAGLRRRLECDAGDSGHGAVA
Ga0126304_107934152	3300010037	Serpentine Soil	MSDRFDRFLPLAGVFAGLLFFAGLILLRNDPPSETAMAETFSYWQDNRSQHQLIALLLTPLMAFLLIFFGAG
Ga0126309_100101871	3300010039	Serpentine Soil	MPTDRFERVQPLAGVLAGLFLIGGLALTWGDPASETAPAETFAYWADHRGRHQISALLLAPLIAFLLVFFGTGLRRHLRDRECDSGHG
Ga0126309_102789442	3300010039	Serpentine Soil	VLAGLLLAGGLALTYSIPNSETSFNETFSWWQDNRGQHQISGLLLAPLVALMLIFFGAGLQRSLRSNTRDSGHGSVAFGGAIL
Ga0126309_104798242	3300010039	Serpentine Soil	VTADRFDRFLLLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWQDNRGQHQISGLLLAPLIAFLLVFFG
Ga0126308_109655582	3300010040	Serpentine Soil	LSRGDDASTVGHGRFERALPLAGVAAGGLLIGGLGLTWGDPSSETSPAETFAYWADHRGRHQLSGLLLAPLIAF
Ga0126314_103522361	3300010042	Serpentine Soil	VTSTRFDRFLPLAGVLVGLLFFVGLALTWGDPSSETSPSDTFAYWHDNRGQHQISGLLLAPLIAFLLVFFGAG
Ga0138505_1000212321	3300010999	Soil	VASDRFERFLPFAGVLAGLLLLTGLLLLRSDPSSETGPAATFAYWQSDHGQHQIIGLIVAPLIAFLLLFFGVGLKRRLERGRADSAYG
Ga0138514_1001246311	3300011003	Soil	FLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLIFIK*
Ga0105246_113612351	3300011119	Miscanthus Rhizosphere	MVSDRFDRFLPLAGVLAGLLIGATFIVDRNHPHAEAGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFSVLG*
Ga0120191_101040872	3300012022	Terrestrial	VDRFDRFLPLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWEDNRGQHQISGLLLAPLGRAQDYERG*
Ga0137327_10393221	3300012173	Soil	VFHPCRVVRPRERSSVTSDRFARFLPLAGVLAGLLLAGGLTLTYSIPSSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLIFFG
Ga0137372_101128571	3300012350	Vadose Zone Soil	VTANRFDRLLPLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWHDNRGQHQISGLLLAPLIAFLLVFFGAGLQQRLK
Ga0137366_111321451	3300012354	Vadose Zone Soil	VTANRFDRLLPLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWHDNRGQHQISGLLLAPLIAFLLVFFGAGLQQRLKRDSGDSGHGVVAFG
Ga0150984_1067398302	3300012469	Avena Fatua Rhizosphere	VTDRFDRFLPLAGVLAGLLFFVGLVLNRSDPASETSPADTFSYWQDDRGQHQIVAILVAPLAAFLLVFFGAALRRRLARGAGDAGHGTV
Ga0136612_102472201	3300012680	Polar Desert Sand	MAPNRFDRFLPLAGVLAGLLFFVGLILLRNDPPSETELAETFTYWASNRGEHQIIALLLTPLMAFLLIFFGAGLRHRLERGSEASGHGTVA
Ga0157301_104666151	3300012911	Soil	MVSERFDRFLPFAGVLAGLLFFVGLVLLWNDPSSEVGPAETFSYWQDDRGRHQIVALLVAPLIALLLV
Ga0162652_1001028561	3300012941	Soil	VDRFDRFLPLAGALIGLLFFVGLGLTSGDPSSETAPAETFSYWRDNRGRYQIYGLLLAPLIAFLLVFFGVGLQQRLKRNAATPAMQRLLSGARS*
Ga0164300_108920761	3300012951	Soil	VVSDRFDRLLPLAGVLAGLLFGAAFIVDWNHPKAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLK
Ga0164298_110222222	3300012955	Soil	LRSDRFDRFLPIAGVLAGLLFFVGLVLLWDDPASETGPAETFAYCQDDRGQHQIVALLVAPLIVFFLL
Ga0164299_102260761	3300012958	Soil	VLAGLLFGAAVIVDWNHPHAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLKRRLEQG
Ga0164299_113544741	3300012958	Soil	VVSDRFDRFLPLAGVLAGLLFGVAFIVDRNDPSTEAGPAQTFAYWQDNRGIHQIVGLLLLPLIA
Ga0164309_112581181	3300012984	Soil	MTSDRFDRFLPLAGILAGLLFFVGLVLNRTGPSSETGAVETFAYWHADHGRHQIVGLLVAPLIAFLLLFFGAGLKRRL
Ga0164307_114857741	3300012987	Soil	MTSDRFDRFLPLAGILAGLLFFVGLFLNRSDPSSETGAVETFAYWHADHGRHQIVGLLVAPLIAFLLL
Ga0075312_10111503	3300014254	Natural And Restored Wetlands	MPSTRFERFQPLAGVLSGLLLIAGLALTWGDPSSETGIDDTFSYWADNRGQHQLSGLLLAPLIAFLLVFFGTGLRRHLRHDR
Ga0075312_10361332	3300014254	Natural And Restored Wetlands	VLAGLLFFVGLVLLWNDPSSETGPAETFAYWQDDRGQHQIVALLVAPLIAFLLLFFGAGLRRRLAQG
Ga0173483_109565792	3300015077	Soil	VASDRFDRFLTLAGVLAGLLFFVGLLLLRNDPSSETGPAETFSYWQGDRGQHQIIALLVAPLIALLLVFFGAGLKRRLESG
Ga0132257_1024426511	3300015373	Arabidopsis Rhizosphere	MIPKRFDRFLPLAGVVAGLLFLVAFVVDRNDPSSETGPAKTFAYWQDNRGMHQLVGLVLLPLIA
Ga0184608_101448862	3300018028	Groundwater Sediment	VSPDRFDRFLPFAGVLAGLLFFVGLLLNRSDPSSETGPADTFSYWQDDRGRHQIVGLLVAPLIAFLLVFFGTG
Ga0184624_101188531	3300018073	Groundwater Sediment	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLVFFGAGLQRS
Ga0184624_102885121	3300018073	Groundwater Sediment	VTADRFDRFLPLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWQDNRGQHQISGLLLAPLVAFLLVFFGAGLQRAL
Ga0184640_104490382	3300018074	Groundwater Sediment	VLAGLLFGAALIVDWNHPKAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGL
Ga0184625_101919422	3300018081	Groundwater Sediment	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLIFFGAGLQRSLRSNTRDSGHGSVAFGGAILG
Ga0184625_104012691	3300018081	Groundwater Sediment	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLV
Ga0184625_105208681	3300018081	Groundwater Sediment	MSDRFDRFLPLAGVLAGLLFFAGLILLRNDPPSETAVAETFSYWQDDRGQHQIIALLLTPLMAFLLIFFGAGLRRRLERGS
Ga0184639_105068461	3300018082	Groundwater Sediment	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLIFFG
Ga0190272_103566152	3300018429	Soil	VESNRFGRFLPLAGVLAGLLLACGLALTYSIPSSETSFDETFSWWRNNRGQHQISGLLLAPLVALMLIFFGAGL
Ga0190270_134702761	3300018469	Soil	VSSDRFARFLPLAGVLAGLLLAGGLTLTYSIPSSETSFEETFSWWEDNRGQRQISGLLLAPLVALMLIFFGAGLQRSLRSNNSDSGHGSVAFGGAILGAAG
Ga0190274_113064392	3300018476	Soil	VPTDRFDRFLPLAGVLAGLMFLAGLVLLRDDPPSESAVAETFAYWQDNQGQHQIIAMILVPLISFLLVFFGSALRRRLDHGGGGSGH
Ga0184647_10312122	3300019263	Groundwater Sediment	LTSDRFDRFLTLAGALAGLMFFVALILLWNDPASETGPAETFSFWQDNRGQHQIVALLVAPLIAFLLLF
Ga0173481_103809851	3300019356	Soil	VPSDRFARFLPLAGVFAGLLLAGGLTLTFSIPSSETPFDKTFAWWQDNRGQHQISGLLLAPLVALMLIFFGAGLQRS
Ga0222622_110932212	3300022756	Groundwater Sediment	VTADRFDRFLPLAGALIGLLFFVGLALTWGDPSSETAPAETFSYWQDNRGQHQISGLLLAPLVAFLL
Ga0247789_10289402	3300023266	Soil	VVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLK
Ga0247789_10689742	3300023266	Soil	VVSDRFDRFLPLAGVLAGLLFGAAFIVDRNDPSTETGPAETLSYWQDNRGIHQIVGLLLLPLIAF
Ga0209431_111147152	3300025313	Soil	MVSDRFDRFLPLAGVLAGLLFLVGLVLNRSDPSSETGPAATFAYWQDNHGQHQIVGLLVAPLIAFLLLFFGSGLRRRLELGSNDSGHG
Ga0209323_105234882	3300025314	Soil	MVSDRFDRFLPLAGVLAGLLFLVGLVLNRTDPSSETGPAETILYWQDNHGQHQIVALLVAPLIAFLLLFFGAGLMRRLEQGSGDSGHG
Ga0207654_114274792	3300025911	Corn Rhizosphere	VISDRFDRVLPFAGVLAGFLFFVGLLLNRSDPSSETGPAETFAYWQDNHGQHQIVGLLVAPLIAFLLLFFG
Ga0207664_106369691	3300025929	Agricultural Soil	VASDRFDRFLPLAGVLAGLLLLVGLVVLRNDPSNETGVADTFAYWQGDRGLHQIVGLIVTPLIAFLLIFFGAGLKRRL
Ga0208420_10213802	3300026028	Natural And Restored Wetlands	MPSTRFERFQPLAGVLSGLLLIAGLALTWGDPSSETGIDDTFSYWADNRGQHQLSGLLLAPLIAFLLVFFGTGLRRHLRHERDAG
Ga0207648_103508723	3300026089	Miscanthus Rhizosphere	VISDRFDRVLPFAGVLAGFLFFVGLLLNRSDPSSETGPADTFSYWHENRGRHQIVGLLVAPLIAFLLVFFGAGLRRRLERDSGGSGHGSV
Ga0207683_103785231	3300026121	Miscanthus Rhizosphere	VRSDRFDRFLPFAGVLIGLLFLVALVLLRNDPSSETGVAKTFAYWHDNRGQHQIIALLITPLVAFLLIFFGAGLRRRLATGSG
Ga0207683_108102312	3300026121	Miscanthus Rhizosphere	LRSDRFDRFLPIAGVLAGLLFFVGLVLLWDDPASETGPAETFAYWQDDRGQHQIVALLVAPLIAFFLLFFGVALWRR
Ga0209267_10910051	3300026331	Soil	VASSRFDRFLPLAGVLAGLLLLAGLVLLRDDPSSETGPAATFSYWQADHGQHQIIGLVVAPLIAFLLL
Ga0209842_10175421	3300027379	Groundwater Sand	MPSDRFARFLPLAGVFAGLLLAGGLTLTYSIPSSETSFEETFSWWQDNRGQHQISGLLLAPLVALMLIFFGAGL
Ga0207981_10928461	3300027560	Soil	MASNRFDRFLSLAGVPAGLLFLAGLALNRTDPSSETGPAKTFAYWQHNHGRHQIVGLLVAPLIAFLLVFFGA
Ga0214468_11592182	3300027647	Soil	VVSDRFDRFLPLAGVLSGLLFFVGLVLLWEDPSSETGPAETFAYWQDDRGQHQIVALLVAPLIAFL
Ga0209814_102715222	3300027873	Populus Rhizosphere	MVSDRFDRFLPLAGVLAGLLFGAAVIVDWNHPRAETGPAQTFAYWQDNRGIHQIVGLLLLPLIAFLLTFFGAGLK
Ga0247821_109576411	3300028596	Soil	VGEVAAVPSDRFARFLPLAGVLAGLIFLTGLIVFRNDPPSESDVAATFDYWRDDQGQHQIVALILTPLMSFLLIFFGS
Ga0307295_102274061	3300028708	Soil	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWRDNRGQHQISGLLLAPLVALMLIFFGAGLQRSLRSNTRDSGH
Ga0307293_100162093	3300028711	Soil	VASDRFERFLPFAGVLAGLLLLTGLLLLRSDPSSETGPAATFAYWQSDHGQHQIIGLIVAPLIAFLLLFFGVGLKRRLERGRT
Ga0307298_100263943	3300028717	Soil	MSDRFDRFLPLAGVLAGLLFFAGLILLRNDPPSENAVAETFSYWQNNRGQHQIIALLLTPLMAFLLIFFGAGLRRRLERRSDDS
Ga0307301_100299201	3300028719	Soil	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWRDNRGQHQISGLLLAPLVALMLIFFGAGLQR
Ga0307317_101557821	3300028720	Soil	VSPDRFARFLPLAGVLAGLLLAGGLTLTYSIPSSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLVFFGA
Ga0307315_100340361	3300028721	Soil	VASDRFERFLPFAGVLAGLLLLTGLLLLRSDPSSETGPAATFAYWQSDHGQHQIIGLIVAPLIAFLLLFFGVGLK
Ga0307316_100879241	3300028755	Soil	VASDRFERFLPFAGVLAGLLLLTGLLLLRSDPSSETGPAATFAYWQSDHGQHQIIGLIVAPLIAFLLLFFGV
Ga0307323_100734433	3300028787	Soil	MSDRFDRFLPLAGVLAGLLFFAGLILLRNDPPSENAVAETFSYWQNNRGQHQIIALLLTPLMAFLLIFFGAGLRRRLERGSDDS
Ga0307323_100838041	3300028787	Soil	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWRDNRGQHQISGLLLAPLVALMLIFFGAGLQRSLRSNTRDSGHGSVA
Ga0307323_102484551	3300028787	Soil	VVSDRFDRFLPLAGVLAGLLFFVGLVLLWNDPSSETGPAETFAYWQDDRGQHQIVALLVVPLIAFFLIFFGAGLRGRLAQG
Ga0307290_102359302	3300028791	Soil	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWRDNRGQHQISGLLLAPLVALMLIFFGAGLQRSLRSNTRDS
Ga0307289_100169215	3300028875	Soil	VPSDRFARFLPLAGVLAGLLLAAGLTLTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLIFFGAGLQRSLRSNTG
Ga0307278_103238012	3300028878	Soil	VTANRFDRLLPLAGALIGLLFFIGLALTWGDPSSETAPAETFSYWHDNRGQHQISGLLLAPLIAFLLVFFGRGPAAATEARQRR
Ga0307278_104339041	3300028878	Soil	VPSDRFARFLPLAGVLAGLLLAAGLALTYSIPNSETSFEETFSWWKDNRGQHQISGLLLAPLVALMLIFFGAGLQ
Ga0307308_104086521	3300028884	Soil	MSDRFDRFLPLAGVLAGLLFFAGLILLRNDPPSENAVAETFSYWQNNRGQHQIIALLLTPLMAFLLIFFGAGLR
Ga0247827_112230872	3300028889	Soil	VVSDRFDRFLPLAGVLAGLLFFVGLALLWNDPSSETGPADTFAYWQDDRGQHQIVALLVAPLIAFLLLFFGAALRRGLAQG
Ga0308201_100174741	3300031091	Soil	VTADRFDRFLPLAGVLIGLLFFVGLALTWGDPSSETSPTETFSYWHDNRGQHQISGLLLAPLVA
Ga0308204_100653751	3300031092	Soil	VTADRFDRFLPLAGVLIGLLFFVGLALTWGDPSSETSPTETFSYWHDNRGQHQISGLLLAPLVAFLLVFFGAGL
Ga0307405_116158722	3300031731	Rhizosphere	VISDRFDRFLPLAGVLAGLLFFVGLVLLWDDPSSETGPAETFAYWQDDRGQHQIVALLVAPLIAFLLLFFGAGLRRRLAQGNGDAGH
Ga0308175_1004374181	3300031938	Soil	MSSRFDRFLPLAGVLAGLLFFVALVLLWEDPSSETGPADTFAFWQDDRGQHQIVALLVAPLIAFLLVGFGAGLRRRLAEGNGD
Ga0307409_1014513742	3300031995	Rhizosphere	LSARAEESAAGADRFERLLPLAGVAAGVLLVAGLALTWGDPSSETAFGETVSYWADDRGRHQLSGLLLAPLIAFLLVFFGTGLRRRLRS
Ga0308176_104203351	3300031996	Soil	MSSRFDRFLPLAGVLAGLLFFVALVLLWEDPSSETGLADTFAFWQDDRGQHQIVALLVAPLIAFLLVGFGAALRRRLAEGN
Ga0310903_104572441	3300032000	Soil	LRSDRFDRFLPIAGVLAGLLFFVGLVLLWDDPASETGPAETFAYWQDDHGQHQIVALLVAPLIAFLLVFFGV
Ga0307416_1000579621	3300032002	Rhizosphere	LSARAEESAAGAGRFERLLPLAGVAAGVLLVAGLALTWGDPSSETAFGETVSYWADDRGRHQLSGLLLAPLIAFLLVFFGTGLRRRLRSVSGE
Ga0307416_1033532242	3300032002	Rhizosphere	VTADRFDRLLSLAGALVGLLFFVGLALTWGDPSSETGPAETFAYWEDNRGLHQISGLLLAPLIAFLLVFFGAGLQQRL
Ga0307415_1004599461	3300032126	Rhizosphere	VTADRFDRFLPLAGALVGLLFFVGLALTWGDPSSETAPTETFSYWQDNRGQHQISGLLLAPLIAFLLVFFGAGLQRRLSRGAGDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066101

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences