Basic Information | |
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Family ID | F066024 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 127 |
Average Sequence Length | 46 residues |
Representative Sequence | MKSIRFRFLIAALAVLLGTAIAKSQTADDTPPPPPMHGHHFGM |
Number of Associated Samples | 114 |
Number of Associated Scaffolds | 127 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 99.21 % |
% of genes near scaffold ends (potentially truncated) | 98.43 % |
% of genes from short scaffolds (< 2000 bps) | 87.40 % |
Associated GOLD sequencing projects | 108 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.45 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (79.528 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (11.024 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.559 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (55.906 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 30.99% β-sheet: 0.00% Coil/Unstructured: 69.01% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
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Pfam ID | Name | % Frequency in 127 Family Scaffolds |
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PF00072 | Response_reg | 43.31 |
PF00486 | Trans_reg_C | 30.71 |
PF02518 | HATPase_c | 4.72 |
PF00672 | HAMP | 2.36 |
PF10282 | Lactonase | 1.57 |
PF13231 | PMT_2 | 0.79 |
PF01791 | DeoC | 0.79 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 79.53 % |
All Organisms | root | All Organisms | 20.47 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 11.02% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 9.45% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 8.66% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 5.51% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 4.72% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.72% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 4.72% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.72% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 3.15% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 3.15% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 3.15% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 3.94% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 3.94% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.94% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.94% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 2.36% |
Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 2.36% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 1.57% |
Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 1.57% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.57% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.57% |
Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 1.57% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 1.57% |
Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.79% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.79% |
Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.79% |
Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.79% |
Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.79% |
Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 0.79% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.79% |
Plant Litter | Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter | 0.79% |
Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.79% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300001867 | Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705) | Environmental | Open in IMG/M |
3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
3300003219 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 | Environmental | Open in IMG/M |
3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300005175 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 | Environmental | Open in IMG/M |
3300005177 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 | Environmental | Open in IMG/M |
3300005529 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 | Environmental | Open in IMG/M |
3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
3300006086 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 | Environmental | Open in IMG/M |
3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
3300009521 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG | Environmental | Open in IMG/M |
3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
3300010321 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015 | Environmental | Open in IMG/M |
3300010360 | Tropical forest soil microbial communities from Panama - MetaG Plot_6 | Environmental | Open in IMG/M |
3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
3300010876 | Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
3300012350 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG | Environmental | Open in IMG/M |
3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
3300017924 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 | Environmental | Open in IMG/M |
3300017925 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 | Environmental | Open in IMG/M |
3300017933 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1 | Environmental | Open in IMG/M |
3300017934 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3 | Environmental | Open in IMG/M |
3300017940 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100 | Environmental | Open in IMG/M |
3300017941 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150 | Environmental | Open in IMG/M |
3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
3300018007 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5 | Environmental | Open in IMG/M |
3300018040 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 | Environmental | Open in IMG/M |
3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
3300018057 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150 | Environmental | Open in IMG/M |
3300018090 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG | Environmental | Open in IMG/M |
3300019786 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction) | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
3300021401 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O | Environmental | Open in IMG/M |
3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
3300021477 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O | Environmental | Open in IMG/M |
3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
3300022521 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24 | Environmental | Open in IMG/M |
3300023259 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24 | Environmental | Open in IMG/M |
3300024331 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09 | Environmental | Open in IMG/M |
3300025320 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025414 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes) | Environmental | Open in IMG/M |
3300025454 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes) | Environmental | Open in IMG/M |
3300026305 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes) | Environmental | Open in IMG/M |
3300026324 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes) | Environmental | Open in IMG/M |
3300026557 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal | Environmental | Open in IMG/M |
3300027297 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes) | Environmental | Open in IMG/M |
3300027676 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) | Environmental | Open in IMG/M |
3300027698 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027737 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027768 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes) | Environmental | Open in IMG/M |
3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
3300027879 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes) | Environmental | Open in IMG/M |
3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
3300027895 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) | Environmental | Open in IMG/M |
3300027898 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes) | Environmental | Open in IMG/M |
3300027911 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes) | Environmental | Open in IMG/M |
3300028780 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2 | Environmental | Open in IMG/M |
3300028798 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2 | Environmental | Open in IMG/M |
3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Host-Associated | Open in IMG/M |
3300029883 | I_Bog_E2 coassembly | Environmental | Open in IMG/M |
3300029910 | III_Palsa_E2 coassembly | Environmental | Open in IMG/M |
3300029913 | III_Bog_N3 coassembly | Environmental | Open in IMG/M |
3300029918 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1 | Environmental | Open in IMG/M |
3300030042 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1 | Environmental | Open in IMG/M |
3300030043 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1 | Environmental | Open in IMG/M |
3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
3300030054 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1 | Environmental | Open in IMG/M |
3300030494 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2) | Environmental | Open in IMG/M |
3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
3300030618 | II_Palsa_E3 coassembly | Environmental | Open in IMG/M |
3300030659 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2) | Environmental | Open in IMG/M |
3300030946 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031234 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2 | Environmental | Open in IMG/M |
3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Host-Associated | Open in IMG/M |
3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
3300031715 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 | Environmental | Open in IMG/M |
3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
3300032515 | FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data) | Environmental | Open in IMG/M |
3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
3300034129 | Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1002194393 | 3300000955 | Soil | MKSIRSRFLIACLAVVLGSVIAKSQTSDSTPTPPTHRHGMGMGMDGHLHF |
JGI12627J18819_102596202 | 3300001867 | Forest Soil | MKAIRFRLLIAFLAVLMGSVIAKSQTTEDAPPAPPMHGHGM |
JGIcombinedJ26739_1000674921 | 3300002245 | Forest Soil | MKSIRFRVLVAALAVMLGAAIAKSQTADTTPAPHRHGHEYGMESHMMEFYAKY |
JGIcombinedJ26739_1018076281 | 3300002245 | Forest Soil | MKPIRFRLLIAALAVLLGTVAAQSQTADAAAPPPPPMHGHGQWGMDGHMM |
JGI26341J46601_101499611 | 3300003219 | Bog Forest Soil | MKSIRLRFFAAALAVLLGSALAKSQTADVPPPMHGHEFGMFGPMMGF |
Ga0062385_102714731 | 3300004080 | Bog Forest Soil | MKPILSRLLIAAAAVFLGTMLAQAQTADDTPPPPPIHGHHDFGMGGPMMG |
Ga0062385_110781562 | 3300004080 | Bog Forest Soil | MKSLRFRFLVAALAVVMGAAIAKSQTADATAPTPAHEHGWGMHSHR |
Ga0062387_1016332092 | 3300004091 | Bog Forest Soil | MKSIRFRLLIAAVAVLLGSAIAKSQTVTADAPPPPPMHHHGMHGHMMRAGFFPR |
Ga0062389_1010557931 | 3300004092 | Bog Forest Soil | MKSIRFRLLIAALAVMLGAAIAKSQTADAPPMHGHEFGMRGPMMGFF |
Ga0066673_108765381 | 3300005175 | Soil | MKSFRFRLLIAGLAVLMGTVAGHSQTAEDTPPPPPMHGHHMGMGMGM |
Ga0066690_102067791 | 3300005177 | Soil | MKSIRFRFFVAALAVTLGAAISKAQTADAPAPHEHAMHDHGFGMEGHMMGFFA |
Ga0070741_100309081 | 3300005529 | Surface Soil | MKAIRFRLLIAALAVLLGSAIAKSQTTEDTPPPPPMHGHGLGMGDPEGME |
Ga0070731_111764261 | 3300005538 | Surface Soil | MKAFRHRLLIAALAVLFGTAIAKSQTAETAPPPPP |
Ga0070733_102023111 | 3300005541 | Surface Soil | MKSIRFRLLIAAVAVLLGSVIAKSQTAADAPPPPPMHHHGMHGHMMRA |
Ga0070733_103557781 | 3300005541 | Surface Soil | MGVTMKSIRFRFLIAALAVLLGSAIAKSQTADDTPPPPPTHMHHSGMGGPMGHFFAAK |
Ga0070732_106724742 | 3300005542 | Surface Soil | MKSIRFRLLIAALAVLLGSAISRAQTDAAPAPPPMHGHEFGMGEHMMEF |
Ga0070766_106732291 | 3300005921 | Soil | MKSIRFRLLVAALAVMLGGAIAKSQTADAAAPTPPGNHAWG |
Ga0070717_110630082 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MKSIRFRFLIAALAVLLGTAIAKSQTADDTPPPPPMHGHHFGM |
Ga0075019_106519831 | 3300006086 | Watersheds | MKSIRIRLLIAAMAVLLGGAVAKSQTADVPPPLPVHGHGYGMHG |
Ga0075014_1008732091 | 3300006174 | Watersheds | MKSIRFRFLAAFLAVLLGSVVAKSQTAEDAAPSHPMHGHGMGMGMEGH |
Ga0070765_1022058521 | 3300006176 | Soil | MKSIRFRLVVAVLAVMLGAAIAKSQTADATAPVHGHAFGMRSPMMGFFA |
Ga0073928_111336681 | 3300006893 | Iron-Sulfur Acid Spring | MKSIRFRFLVAALAVLLGSAIAKSQTADAPPPPPMHGFGLDGHMMGFFAKY |
Ga0116222_13468962 | 3300009521 | Peatlands Soil | MKSIRFRLIIAALAVLLGTAIAKSQTTADAPPPPPM |
Ga0116222_15572201 | 3300009521 | Peatlands Soil | MKSIRLRLFVAALAVMLGGAIAKSQTADTTAPPPRHEHAWGMHGHMMGFP |
Ga0126373_123310002 | 3300010048 | Tropical Forest Soil | MKSIRFRLLLAVMAVLLGTMIAKSQTTEDTPPPPPMH |
Ga0099796_103134442 | 3300010159 | Vadose Zone Soil | MKSIRFRFLVAALAVTLGAAIGKSQTTDATTPPPNHEHRHGFGMEGHQLDFYAK |
Ga0134067_101526742 | 3300010321 | Grasslands Soil | MKSFRFRLLIAGLAVLMGTVAGQSQTAEDTAPPPPMHGHHMGMGMGMG |
Ga0126372_102096451 | 3300010360 | Tropical Forest Soil | MKSFRFRLFAAALAILMGSAIAKSQTADAPPAGGGP |
Ga0126379_100879681 | 3300010366 | Tropical Forest Soil | MKSIRNRMLIAAMAVLMASTIVRSQTAEDTPPPPPMHGHGFGMHGHMM |
Ga0126381_1002642241 | 3300010376 | Tropical Forest Soil | MKSIRFRFLIAALAVLLGTAIAKSQTADDTPPPPPMHGHHHFGMEDPMGHF |
Ga0126361_106820482 | 3300010876 | Boreal Forest Soil | MKSIRFRFLAAALAVLLGTAIAKSQTADTSSPPPTHGGMHGALGMDG |
Ga0137372_104602971 | 3300012350 | Vadose Zone Soil | MKSIRFRLLIAAMAVLLGSAIAKSQTATDAPPPPMHGHGFGMEGHRM |
Ga0137416_120983961 | 3300012927 | Vadose Zone Soil | MKSIRFRFLVAALAVMLGAAIVNSQTADATAPPPMHG |
Ga0164301_110475431 | 3300012960 | Soil | MKSFRYRLLIAALAVLMGTVAGHSQTADTPPSPPMHGHHMGMGMGMGGH |
Ga0126369_118724752 | 3300012971 | Tropical Forest Soil | MRSIRFRFLIAALAVLLGTAIAKSQTTDDTPPPPPM |
Ga0181537_101001043 | 3300014201 | Bog | MKSIRFRLFVAALAVMLGGAIAKSQTADNDAPPPPPMDHHDFGMGGPLGPFFAK |
Ga0137418_101529553 | 3300015241 | Vadose Zone Soil | MKSIRFRFLVAALAVMLGAAIVNSQTADATAPPPMHGHGYGMEGHEG |
Ga0182039_120091341 | 3300016422 | Soil | VKAIRFRLLIAFLAVLTGSVIAKSQTAEDTQPAPPMHGHGMGM |
Ga0187818_105253511 | 3300017823 | Freshwater Sediment | MKSLRFRFLIAALAVLLGSALMRAQTAEDAPPPAMHGHAFGMEHGHMMGFFSRK |
Ga0187820_13142021 | 3300017924 | Freshwater Sediment | MKLIRFRLLIAFVAVLMASVIAKSQTAENAPPPPMHGHGFGMEGH |
Ga0187856_10088795 | 3300017925 | Peatland | MKSIRFRLLIAAAAVLLGTAIAKSQTAADAPPSPPMHGPGHEFGMGG |
Ga0187801_100574581 | 3300017933 | Freshwater Sediment | MKSISFRLLLAAAAVLLGSALMKAQSSDDAAPPPMHGHEFGM |
Ga0187803_101255201 | 3300017934 | Freshwater Sediment | MKSIGFRLMMAAMAVLLGSAIAKSQTAADAPPPPPMHGHG |
Ga0187853_100499261 | 3300017940 | Peatland | MKSIRFRFLVAALAVLLGSAIAKSQTADAPPPPPMHGFGLDGHMMGF |
Ga0187850_103349182 | 3300017941 | Peatland | MKSIRFRFLVAALAVLLGSAIAKSQTADAPPPMRGHEFGMEGHMMGFFAKYLD |
Ga0187817_105813531 | 3300017955 | Freshwater Sediment | MKSIRFRLLIAAMAVLLGTVTAKAQTGTDAPPPMHGHDHRYGMGERMVG |
Ga0187804_104736791 | 3300018006 | Freshwater Sediment | MKSIRFRFLVAALAVMLGAAIAKSQTADATAPPPLHEHGWGMHGHMMG |
Ga0187805_100268573 | 3300018007 | Freshwater Sediment | MKSIRFRFLIAALAVLLGSAIAKSQTPEDTPPPPPMHGHHFDMGGPM |
Ga0187862_102570822 | 3300018040 | Peatland | MKSIRFRFLVAALAVLLGSAIAKSQTADAPPPPPMHGFGLDGHMMGFFA |
Ga0187887_102676971 | 3300018043 | Peatland | MKSFSFRFLIAALAVLLGSYIANAQTADATAPPPMHGHEFGMRGDHMGFFARQLN |
Ga0187858_103729921 | 3300018057 | Peatland | MKSIGLRFAVAALAVLLGGAIAKSQTADTTPAPPPMHGGM |
Ga0187770_107607082 | 3300018090 | Tropical Peatland | MKSIRFRLLIAAVAVLVGTAIAKSQTAEEAPPSPPRHFQGFGMGEHMGFFAR |
Ga0182025_11879606 | 3300019786 | Permafrost | MKSIRFRLLVAALAVMLGSAIAKSQTADAPPPMHGHAFGMEGH |
Ga0210403_107735181 | 3300020580 | Soil | MKSFSFRFLIAALAVLLGSYIANAQTADATTPPPMHGHEFGMGGEHMGFFARQ |
Ga0210401_105545001 | 3300020583 | Soil | MKSIRFRLVVAVLAVMLGAAIAKSQTADATAPVRGHAFGMRSPMMG |
Ga0210388_117998622 | 3300021181 | Soil | MHSIRFRFLVATLAVMLGAAIAKSQTAESTPPPPPMHGPGFGMDHHMIEFY |
Ga0210393_104985591 | 3300021401 | Soil | MKSFRFRLLIAALAVVLGSAIAKSQTAADAPPPPPMHG |
Ga0210393_111091391 | 3300021401 | Soil | MKSIGVRFLVAALAVLLGTAIAKSQTADDTPPPPPMHEHHFAGGPMGHFFAAKL |
Ga0210385_103815231 | 3300021402 | Soil | MKTIRFRLLVAALAVLLCGAIAKSQTADATAPMHGRAFG |
Ga0210384_109673021 | 3300021432 | Soil | MKSIRIRLLIAAMAVLLGSAIAKSQTADTAPPPPLHGH |
Ga0210398_107264982 | 3300021477 | Soil | MKSFSSRLLLAALAVLLGSYVAHAQTADATTPPPAHAHQFGMRGEHMGFFAR |
Ga0210398_111229532 | 3300021477 | Soil | MKSIRFRFLVAALAVVLGAAIAKSQTADAPAPPPMHDHEFGMEGHMMGFFAK |
Ga0126371_127920181 | 3300021560 | Tropical Forest Soil | MKSIRFRLMIAALAVLMASTLAKSQTTDEAPAPPMHHHGMGM |
Ga0224541_10331651 | 3300022521 | Soil | MKSIRFRLFVAALAVMLGGAIAKSQTADTTAAPPSTH |
Ga0224551_10136562 | 3300023259 | Soil | MKSFRFRLSIAVLAILLGSAIARSQATADTPPPPPGHGHEFGM |
Ga0247668_11149491 | 3300024331 | Soil | MKSIRFRLLIAAMAVLLGTAIARSQTTTDTAPPPPMHGHGFGMG |
Ga0209171_106218451 | 3300025320 | Iron-Sulfur Acid Spring | MSHMKSFRFRLSIAVLAILLGSAIARSQTTADTPPPPPGHGHEFGMGGRG |
Ga0208935_10310673 | 3300025414 | Peatland | MKSFSFRFLIAALAVLLGSYIANAQTADATAPPPM |
Ga0208039_10763871 | 3300025454 | Peatland | MKSIRFRFLVAALAVLLGSAIAKSQTADAPPPPPMHGFGLDGHMMGFFAK |
Ga0209688_10291171 | 3300026305 | Soil | MKSFRFRLLIAGLAVLMGTVAGHSQTAEDTPPPPPMHGHHM |
Ga0209470_11832531 | 3300026324 | Soil | MKSFRFRLLIAGLAVLMGTVAGHSQTAEDTPPPPPMHGHHMG |
Ga0179587_104804041 | 3300026557 | Vadose Zone Soil | MKSIHFRFLVAALAVLLGAAIAKSQSSDALAPPMHHHAAGMGTGHMMHFWAKYL |
Ga0208241_10699412 | 3300027297 | Forest Soil | MKTIRFRLLVAALAVLLGGAIARSQTTDATAPVHGHAFGMRSPMMGFFT |
Ga0209333_10350723 | 3300027676 | Forest Soil | MKSIRFRLLVAALAVMLGGAIAKSQTADAAAPTPTRDH |
Ga0209446_11653972 | 3300027698 | Bog Forest Soil | MKSIRFRLVVAALVVMLGAAIAKSQTADAPPMRGHEFGMESHMIGFFARSL |
Ga0209038_100639892 | 3300027737 | Bog Forest Soil | MKSIRFRFLVAAVAVLLGAALAKSQTADSTPPPHMHDHGFGYDGHMMGFFA |
Ga0209772_100708702 | 3300027768 | Bog Forest Soil | MEIMKSIRFRFLVAALAVLLGSAIAKSQTADAPPPPPMHGPGFGME |
Ga0209656_101651061 | 3300027812 | Bog Forest Soil | MKSIRFRFLVAALAVLLGSAIAKSQTADDSAPPPPRHGHEFGMEGHMMDF |
Ga0209040_101202581 | 3300027824 | Bog Forest Soil | MKSIRLRFFAAALAVLLGSALAKSQTADVPPPMHGHEFGMFGPMMGFLAK |
Ga0209040_103578252 | 3300027824 | Bog Forest Soil | MKSIRFRFLAAALAVMLGAAIAKSQTADATAPPAPHEHSWGMRGHMMG |
Ga0209169_102507412 | 3300027879 | Soil | MKSIRVRFLVAALAVTLGAAIAKSQTADAPPPPPMNGHEFGLGGHMMGFFAKYLD |
Ga0209275_100083385 | 3300027884 | Soil | MKTIRFRLLVAALAVLLGGAIARSQTTDATAPVHGHAFGMRS |
Ga0209275_107289431 | 3300027884 | Soil | MKAIRIRVLVAALAVLFGTAIAKSQTADAAPPHPPP |
Ga0209624_107074002 | 3300027895 | Forest Soil | MKTIRFRFLVAALAVTLGAAIAKSQTTDSTTAPPPMHG |
Ga0209067_107030001 | 3300027898 | Watersheds | MKSIRFRFLAAFLAVLLGSVVAKSQTAEDTAPSHPMHGHGM |
Ga0209698_114211801 | 3300027911 | Watersheds | MKSIRYRVLLAAMAVLLGSAIAKSQTAADAPPPPPMHGHGHEFGMHGEMMGFFA |
Ga0302225_103730911 | 3300028780 | Palsa | MKSIRFRLFVAALAVMLGGAIAKSQTADTTAAPPSTHSQAWGMRGHMMGLPLKQLD |
Ga0302222_100063355 | 3300028798 | Palsa | MKSIRLRFLAATMAVLLGGAIAKSQTPDAPPRMHGHEFGMEGPMMG |
Ga0265338_104117682 | 3300028800 | Rhizosphere | MKSIGFRLLIATLAVLLGSAIAKSQTAEDAPPPPPMHGHA |
Ga0311327_100491571 | 3300029883 | Bog | MKSIRLRFLVAALAVVMGAAISKAQSADTATDAPPPPPAHGHGWG |
Ga0311369_112699242 | 3300029910 | Palsa | MKSLRSRFLAAALAVLLGSAIAKSQTTDSAPPPPAHGHEFGMEGHMMGFYAKFLDIT |
Ga0311362_104886622 | 3300029913 | Bog | MKSIRFRLFVAALAVMLGGAIAKSQTADTAAPPPPPHAHAWGMRGHMMGFPF |
Ga0302143_10126461 | 3300029918 | Bog | MKSIRLRFLVAALAVVMGAAISKAQSADTATDAPPPPPAHG |
Ga0302300_12082922 | 3300030042 | Palsa | MKSLRFRFLAAVLAVLLGSAIAKSQTTDSAPPPPAHGHEFGMEGHMMGFYAKFLD |
Ga0302306_103657113 | 3300030043 | Palsa | MKSLRFRFLAAVLAVLLGSAIAKSQTTDSAPPPPAHGHE |
Ga0302177_104525071 | 3300030053 | Palsa | MKSIRFRLFVAALAVMLGGAIAKSQTADTTAAPPSTHPQA |
Ga0302182_103864401 | 3300030054 | Palsa | MKAIRVRVLIAALAVLFGAAIAKSQTADDVPPPPPHGGEFGFGGHMLKFFTGYLNLTEAQ |
Ga0310037_103679952 | 3300030494 | Peatlands Soil | MKSFRARLLIAAMAVLLGSIIARSQTADATQPPPMHGHEFGMGG |
Ga0311357_111715871 | 3300030524 | Palsa | MKSIRFRLLVAALAVMLGGAIAKSQTADAAAPTPTHEHAWGMRGQMMGFPLKQLDLSD |
Ga0311355_100244281 | 3300030580 | Palsa | MKSIRLRFLAATMAVLLGGAIAKSQTPDAPPRMHGH |
Ga0311355_104258673 | 3300030580 | Palsa | MKSIRFRLLVAALAVMLGGAIAKSQTADAAAPTPTHEHAWGMRGQMMGFPLKQLDL |
Ga0311354_105015073 | 3300030618 | Palsa | MKSIRFRLLVAALAVMLGGAIAKSQTADAAAPTPARDHAWGMPGQ |
Ga0316363_101215661 | 3300030659 | Peatlands Soil | MKSIRFRLLVAALAVLLGSAISRSQTADAAAPPPMHGHGFGMGEHMMEFFADYLN |
Ga0075379_105762432 | 3300030946 | Soil | MKSIRYRFIVAAIAVMLGSAIAKSQTTDAPPPQPMHGGMEHEGMG |
Ga0265760_102350762 | 3300031090 | Soil | MKSIRFRFLAAALAVLLGTAIAKSQTADTSSPPPTHRGMHGALGMD |
Ga0170824_1014699151 | 3300031231 | Forest Soil | MKSIRFRFLVAALAVTLGAAISKSQTADSTPPPPMHEHGHGFGMEGH |
Ga0170824_1133285552 | 3300031231 | Forest Soil | MKPIRFRLLIAAMAVLLGSAIANANAQTSDDATPPPMHDHEHGMRGMHD |
Ga0302325_116221491 | 3300031234 | Palsa | MKSIRFRLFVAALAVMLGGAIAKSQTADTTAAPPSTHAQAWGMRGHMMGL |
Ga0302324_1009460842 | 3300031236 | Palsa | MKSIRFRLFVAALAVMLGGAIAKSQTADTTAAPPSTHAQAWGMRGHMMGLP |
Ga0265325_100932693 | 3300031241 | Rhizosphere | MKSIRYRLLIATMAVLLGSSIAKSQTAADAPPPPPMHGHGYGMEGEDHRM |
Ga0170820_113745381 | 3300031446 | Forest Soil | MKSIRFRLLIAAMAVLLGSALAKSQTAADAPPPPMHGHGYGGH |
Ga0302326_100951101 | 3300031525 | Palsa | MKSIRFRLFVAALAVMLGGAIAKSQTADTTAATPSTHSQA |
Ga0310915_105407232 | 3300031573 | Soil | MKSIRTRLLVAALAVLMGATIAKSQTADSTPPSPPMHG |
Ga0307476_102433273 | 3300031715 | Hardwood Forest Soil | MKSIRFRLLVAALAIMLGSAIAKSQTADTPPPPSTHGHGFGMEG |
Ga0307477_107310031 | 3300031753 | Hardwood Forest Soil | MKSIRLRLFVAALAVMLGGAIAKSQTADAAAPPPKYEHSWGMHGHMMGFPFKQL |
Ga0307478_109299572 | 3300031823 | Hardwood Forest Soil | MKTIRFRFLVAALAVTLGAAIAKSQTTDSTTAPPPMHGHEFG |
Ga0306926_111403742 | 3300031954 | Soil | MKSIRTRLLVAALAVLMGATIAKSQTADSTPPSPPMHGHGFGMHGEMM |
Ga0307471_1001542173 | 3300032180 | Hardwood Forest Soil | MKSIRFRFLAAFLAVLLGSVVAKSQTTEDAAPSHPM |
Ga0307471_1013984511 | 3300032180 | Hardwood Forest Soil | MKSIRFRLLVAALAVTLGTALTHAQTADAPSMHEHGFGMEGHEGH |
Ga0307471_1021782721 | 3300032180 | Hardwood Forest Soil | MKSIRFRFLMAAFAVMLGAAIAKAQTADATPPPPAHEHGHGFGMEGHMLEFYAK |
Ga0348332_102775232 | 3300032515 | Plant Litter | MKSIGFRFLVATLAVLLGSAIAKSQTTDTPPPMRGHEFAMEGHM |
Ga0335079_104456101 | 3300032783 | Soil | MKSIRFRLMIAALAVLLGSTIAKSQTAEDTPPPPPMHGHGMGMGMGME |
Ga0335079_120760551 | 3300032783 | Soil | MKSLGFRLMVAALAVLLGSALAKSQTAADVPPPPPMHG |
Ga0335075_101281341 | 3300032896 | Soil | MKSIRFRFLVAALAVMLGAAIGNAQTADSTTPPPMHGHGFFMGGPMGMG |
Ga0335084_107229011 | 3300033004 | Soil | MKSIRLRLLIATVAVLLGSVIAKSQTAEDAPPPPPMHRHAHGFGADDPEA |
Ga0335073_113895521 | 3300033134 | Soil | MTSIRFRFLMAAFAVLLGTVIAKSQTAEDVPPPPPMHGHEF |
Ga0370493_0243165_494_607 | 3300034129 | Untreated Peat Soil | MKSIGYRLMVAALAVMLGSAVAKSQTAEAAPPPPMHGH |
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