Metagenome / Metatranscriptome Family F065997

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F065997
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	64 residues
Representative Sequence	KIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKKTKVAAAK
Number of Associated Samples	75
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.00 %
% of genes near scaffold ends (potentially truncated)	59.06 %
% of genes from short scaffolds (< 2000 bps)	55.12 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (62.992 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (26.772 % of family members)
Environment Ontology (ENVO)	Unclassified (27.559 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.031 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.96% β-sheet: 0.00% Coil/Unstructured: 56.04%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF03734	YkuD	11.02
PF09361	Phasin_2	3.94
PF00563	EAL	2.36
PF00072	Response_reg	1.57
PF13361	UvrD_C	1.57
PF00881	Nitroreductase	1.57
PF07586	HXXSHH	0.79
PF00817	IMS	0.79
PF11116	DUF2624	0.79
PF00565	SNase	0.79
PF00884	Sulfatase	0.79
PF02518	HATPase_c	0.79
PF05036	SPOR	0.79
PF11604	CusF_Ec	0.79
PF00691	OmpA	0.79
PF00990	GGDEF	0.79
PF13406	SLT_2	0.79
PF13460	NAD_binding_10	0.79
PF07992	Pyr_redox_2	0.79
PF01522	Polysacc_deac_1	0.79
PF04392	ABC_sub_bind	0.79
PF06441	EHN	0.79
PF08238	Sel1	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	11.02
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	11.02
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	2.36
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	2.36
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	2.36
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	2.36
COG0389	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	Replication, recombination and repair [L]	0.79
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.79
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
All Organisms	root	All Organisms	37.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
cellular organisms	root	All Organisms → cellular organisms	37.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.32 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	3.15 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.57 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.79 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	3.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.36 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.15 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.79 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.79 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.99 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3.15 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1.57 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.57 %
Afipia sp. P52-10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. P52-10	0.79 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.79 %
Microvirga tunisiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	0.79 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.79 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1005126	Not Available	940	Open in IMG/M
3300000891\|JGI10214J12806_13766116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	561	Open in IMG/M
3300000955\|JGI1027J12803_101930256	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300000955\|JGI1027J12803_102385924	Not Available	573	Open in IMG/M
3300000956\|JGI10216J12902_125846027	Not Available	510	Open in IMG/M
3300003659\|JGI25404J52841_10143010	Not Available	507	Open in IMG/M
3300004114\|Ga0062593_101039860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	844	Open in IMG/M
3300004463\|Ga0063356_100308899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1967	Open in IMG/M
3300005289\|Ga0065704_10873690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	502	Open in IMG/M
3300005294\|Ga0065705_10567207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	724	Open in IMG/M
3300005332\|Ga0066388_100761441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1566	Open in IMG/M
3300005332\|Ga0066388_100969681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1418	Open in IMG/M
3300005332\|Ga0066388_105889851	Not Available	620	Open in IMG/M
3300005336\|Ga0070680_101983203	Not Available	504	Open in IMG/M
3300005459\|Ga0068867_100697945	Not Available	895	Open in IMG/M
3300005713\|Ga0066905_100107017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga tunisiensis	1914	Open in IMG/M
3300005713\|Ga0066905_100335236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1202	Open in IMG/M
3300005713\|Ga0066905_100343846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1189	Open in IMG/M
3300005713\|Ga0066905_100962768	Not Available	750	Open in IMG/M
3300005713\|Ga0066905_101281372	Not Available	658	Open in IMG/M
3300005713\|Ga0066905_101442656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	624	Open in IMG/M
3300005844\|Ga0068862_100632979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1030	Open in IMG/M
3300005937\|Ga0081455_10062297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3136	Open in IMG/M
3300005937\|Ga0081455_10111920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2168	Open in IMG/M
3300005937\|Ga0081455_10194008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1527	Open in IMG/M
3300006175\|Ga0070712_101615937	Not Available	567	Open in IMG/M
3300006844\|Ga0075428_100128378	All Organisms → cellular organisms → Bacteria → Proteobacteria	2758	Open in IMG/M
3300006844\|Ga0075428_100297856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1734	Open in IMG/M
3300006844\|Ga0075428_101028620	Not Available	871	Open in IMG/M
3300006844\|Ga0075428_101905139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300006846\|Ga0075430_100046006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3685	Open in IMG/M
3300006852\|Ga0075433_10913528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	766	Open in IMG/M
3300006854\|Ga0075425_100147899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2690	Open in IMG/M
3300006854\|Ga0075425_100554694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1322	Open in IMG/M
3300006854\|Ga0075425_102724044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	545	Open in IMG/M
3300006871\|Ga0075434_100685547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1042	Open in IMG/M
3300006871\|Ga0075434_101061702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300006904\|Ga0075424_100594726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1181	Open in IMG/M
3300009100\|Ga0075418_10332983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1620	Open in IMG/M
3300009147\|Ga0114129_10127369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3500	Open in IMG/M
3300009147\|Ga0114129_10281744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2221	Open in IMG/M
3300009147\|Ga0114129_11472572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	838	Open in IMG/M
3300009148\|Ga0105243_10892245	Not Available	884	Open in IMG/M
3300009148\|Ga0105243_11799468	Not Available	643	Open in IMG/M
3300009162\|Ga0075423_10121792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2735	Open in IMG/M
3300009162\|Ga0075423_10353915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1540	Open in IMG/M
3300009162\|Ga0075423_11996728	Not Available	628	Open in IMG/M
3300009168\|Ga0105104_10969704	Not Available	502	Open in IMG/M
3300010046\|Ga0126384_12025395	Not Available	551	Open in IMG/M
3300010047\|Ga0126382_10626638	Not Available	890	Open in IMG/M
3300010047\|Ga0126382_11286167	Not Available	660	Open in IMG/M
3300010047\|Ga0126382_12536212	Not Available	501	Open in IMG/M
3300010359\|Ga0126376_10102157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. P52-10	2189	Open in IMG/M
3300010359\|Ga0126376_12351657	Not Available	579	Open in IMG/M
3300010361\|Ga0126378_12190485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300010362\|Ga0126377_12110486	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010398\|Ga0126383_11832402	Not Available	695	Open in IMG/M
3300010403\|Ga0134123_10269757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1492	Open in IMG/M
3300012958\|Ga0164299_11605289	Not Available	512	Open in IMG/M
3300013306\|Ga0163162_10097405	All Organisms → cellular organisms → Bacteria → Proteobacteria	3030	Open in IMG/M
3300015373\|Ga0132257_102976104	Not Available	617	Open in IMG/M
3300015373\|Ga0132257_103780302	Not Available	551	Open in IMG/M
3300018067\|Ga0184611_1102299	Not Available	996	Open in IMG/M
3300018072\|Ga0184635_10297138	Not Available	633	Open in IMG/M
3300018073\|Ga0184624_10443253	Not Available	571	Open in IMG/M
3300019869\|Ga0193705_1093004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300021510\|Ga0222621_1147660	Not Available	501	Open in IMG/M
3300022756\|Ga0222622_10255253	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300022756\|Ga0222622_10630921	All Organisms → cellular organisms → Bacteria → Proteobacteria	775	Open in IMG/M
3300026075\|Ga0207708_10150512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1831	Open in IMG/M
3300027909\|Ga0209382_10783947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1016	Open in IMG/M
3300028755\|Ga0307316_10322931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	566	Open in IMG/M
3300028793\|Ga0307299_10253436	Not Available	661	Open in IMG/M
3300028819\|Ga0307296_10081108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	1729	Open in IMG/M
3300028819\|Ga0307296_10140839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300028884\|Ga0307308_10081833	Not Available	1531	Open in IMG/M
3300031421\|Ga0308194_10022667	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300031538\|Ga0310888_10787991	Not Available	588	Open in IMG/M
3300031720\|Ga0307469_12416256	Not Available	513	Open in IMG/M
3300032017\|Ga0310899_10705949	Not Available	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.12%
Host-Associated	Host-Associated	44.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.03%
Plants	Host-Associated → Plants	44.88%
Aquatic	Environmental → Aquatic	7.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.28%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.60%
Sediment	Environmental → Aquatic → Sediment	4.72%
Freshwater	Environmental → Aquatic → Freshwater	2.36%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.50%
Loam	Environmental → Terrestrial → Soil → Loam	11.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.36%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.66%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.57%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	26.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.15%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.36%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.79%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012480	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.yng.040610	Host-Associated	Open in IMG/M
3300012492	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.yng.030610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_10051263	2228664022	Soil	FIALWTERVNRFMARKVEPPTHYAQHVSKAKKPAKAAVTNKKKTKIAAAK
AF_2010_repII_A100DRAFT_10339071	3300000655	Forest Soil	ERVNRFMARKVEPPTHYVQHASKVEKSTKLAVTEKKTTKRAAADNKEKKTKVASR*
JGI11643J12802_104568081	3300000890	Soil	FIALWTERVNRFMARKVEPPTHYVQYTSKAKKPTKAAVTDKKRTKVAATEKKKT*
JGI11643J12802_115890704	3300000890	Soil	LWTERVNRFMARKVEPPTHYVQHVSKPRKLTQLAAKKKTKLAAAEKKK*
JGI10214J12806_137661162	3300000891	Soil	EALTSGQFIALWTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
JGI1027J12803_1016991741	3300000955	Soil	VASIALWTERVNRFMARKVEPPTHYVQHASKTKKLTRLAATDKKKTKVAATEKKITKLEAR*
JGI1027J12803_1019302562	3300000955	Soil	PSDIKNKIKGGVDALTSGQFIALWTERVNRFIARKVEPPTHYVQHAAKAKKPTKAARTDKKRTKFAASN*
JGI1027J12803_1023859241	3300000955	Soil	PSDIKNKIKGGVDALTSGEFIALWTERVNRFMARRVEPPTQYVQQVSSKAKKLTQVVLTAKKKTKVAASK*
JGI10216J12902_1043275871	3300000956	Soil	ALWTERVNRFMARKVEAPTHYVQHASKAKKLTETAVTDKKKTKVAAAKKRRPR*
JGI10216J12902_1048750681	3300000956	Soil	TERVNRFMARKVEPPTYYVQPVSKAKKLTQLAANKKKTKVAAAEKKK*
JGI10216J12902_1258460272	3300000956	Soil	LWTERVNRFMARKVEPPTHYVQHTSKAKKLTQKKTKVAAVK*
JGI25404J52841_101430101	3300003659	Tabebuia Heterophylla Rhizosphere	KGEKWARKAIWGNVPSDIKNKIKGGLAALTSGQFIALWTERVNRFMARKVEPPTRYVQHASKAKKKTKVAATEKKMTNLEAR*
Ga0062593_1010398601	3300004114	Soil	ALTSGQFIALWTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0062589_1002900832	3300004156	Soil	ERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0062590_1002907482	3300004157	Soil	WTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0063356_1003088991	3300004463	Arabidopsis Thaliana Rhizosphere	DIKNKIKGGLEALTSGQFIALWTERVNRFMARKVEAPEHYVQHASKAKSTQLAAAGKNKTKVAAPDKKKKKIKVASH*
Ga0065704_108736901	3300005289	Switchgrass Rhizosphere	EKGEKWARKAIWGNVPWDLKNKIKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYAQHVSKAKKPAKAAVTNKKKTKIAAAK*
Ga0065705_105672071	3300005294	Switchgrass Rhizosphere	MGAQGHLGQRPVGPQKQDQGRTCGRQFIALWTERVNRFMARKVEPPTHYVQHASKTKKLTRLAATDKKKTKVAATEKKITKLEAR*
Ga0066388_1004028144	3300005332	Tropical Forest Soil	LTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0066388_1007614413	3300005332	Tropical Forest Soil	FKNTIKGGLEALTSGQFIALWTERVNRFMGRKVEPPTHYVRHASKAKKLTQKKTKVAAAK
Ga0066388_1009696811	3300005332	Tropical Forest Soil	IKGGVEALTSGQFIALWTERVNRFMTRKVEPPTEYVQHASKVKKKTKSAAIKKEKMTKLEAR*
Ga0066388_1056946131	3300005332	Tropical Forest Soil	KIKGGLEGLTSGQFIAIWTERVERFIARMVEPPTTYVERATKTKKAAAADKKEKKIKVATS*
Ga0066388_1058898512	3300005332	Tropical Forest Soil	KGGVEALTSGQFIALWTERVNRFMARNVEPPTHYVQHASKARKSSKLVVNDRKKTKVAAAEKRKTSAALQ*
Ga0066388_1088436502	3300005332	Tropical Forest Soil	FIALWTERVNRFMARKVEPPTQYVQQAKKAKKSTKVVGTERKKMKRAATDDKNTTVASW*
Ga0070680_1019832031	3300005336	Corn Rhizosphere	NVPADLKAKFKGGVEALTSGQFIKLWTERVNRFMARKVEAPTHYVQSASKAKKPAKSVTTNKKNTKSAAIKKEKPG*
Ga0070675_1018328221	3300005354	Miscanthus Rhizosphere	FVALWTERVERFMAREIEPPAHYVEHVSKAKKPKVAATDKKKKKIKVASR*
Ga0068867_1006979451	3300005459	Miscanthus Rhizosphere	KIEGGVEALTSGQFIALWTERVDSFMARNVEPPADYLQHASNAKKPTQLAVTGNNKTKVAATDKKKKKTKVA*
Ga0066905_1001070174	3300005713	Tropical Forest Soil	MARKVEPPTHYVQHVSKPRKLTQLAANKKKTKVAAAEKKK*
Ga0066905_1003352361	3300005713	Tropical Forest Soil	KWARKAIWGNVPKDLKNTIKGGVEALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKMAATGKKKTKVAATAKKMTIEAR*
Ga0066905_1003438461	3300005713	Tropical Forest Soil	GVEALTSGQFIALWTERVNRFIARKVEPPTHYVQQVSKPRKLTQLTANKKKTKVAAVEKKK*
Ga0066905_1009627682	3300005713	Tropical Forest Soil	PWDLKKKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKKTKVAAAK*
Ga0066905_1012813721	3300005713	Tropical Forest Soil	GAKWARKAIWGNVPRDLKNTIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHVSKPRKLTQLAANKKETKVAAAEKKK*
Ga0066905_1014426562	3300005713	Tropical Forest Soil	GGVEALTSGQFIALWTERVNSFMARQVEPPTQYVQQVSSKAKKLSQTVLAAKKKTKVAATR*
Ga0068862_1006329793	3300005844	Switchgrass Rhizosphere	NVPSDIKNKIKGGVDALTSGQFVALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0081455_100622972	3300005937	Tabebuia Heterophylla Rhizosphere	MARKAIWGNVPWDLKNKIKGGVNALTSGQFVALWTERVNRFMARKVEPPTHYVQHVRKAKKPAKGAVTDKKKTKIAAAK*
Ga0081455_101119201	3300005937	Tabebuia Heterophylla Rhizosphere	EKWARKAIWGNVPADLKNKFKGGVEALTSGQFIALWTERVNRFMGRKVEPPTHYVQHTSKAKKPTQLVFRAKKKTKVAAAEKNNHHPYVGQALP*
Ga0081455_101940081	3300005937	Tabebuia Heterophylla Rhizosphere	KGGVEALTSGQFVALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0070712_1016159371	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GGVEALTSGQFIALWTERVNRFIARKVEPPTEYVQHATKVKKATKFAASQKKKSKGAAIDKKKAPMG*
Ga0075428_1001283781	3300006844	Populus Rhizosphere	NVPADLKNKFKGGVNALTSGQFIALWTERVNRFMGRKVEPPTHYVQHTSKAKKPTQLVFRAKKKTQVAAAEKKNHHPYVGQAVP*
Ga0075428_1002978563	3300006844	Populus Rhizosphere	VDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0075428_1010286202	3300006844	Populus Rhizosphere	KIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075428_1019051392	3300006844	Populus Rhizosphere	KGGVEALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKTKSAAIKKEKTTKLEAR*
Ga0075421_1027236501	3300006845	Populus Rhizosphere	ALTSGQFIALWTERVNRFMARKVEPPTHYVQHVSKAKKSTKAAVTDKKRTKVAATK*
Ga0075430_1000460061	3300006846	Populus Rhizosphere	VPSDLKNKIKGGLAALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKTKKLTRLAATDKKKTKVAATEKKITKLEAR*
Ga0075431_1009953391	3300006847	Populus Rhizosphere	TSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0075431_1012866992	3300006847	Populus Rhizosphere	IALWTERVNRFMARKVEPPTQYVQHASKAKKSTKAAVTDKKRTKVAATK*
Ga0075433_109135282	3300006852	Populus Rhizosphere	KGGVEALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKTKSAAIKKEKMTKLEAR*
Ga0075425_1001478991	3300006854	Populus Rhizosphere	KGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075425_1005546942	3300006854	Populus Rhizosphere	KWARKAIWGNVPSDIRNKIKGGVDALTSGQFIALWTERVNRFMARKVEPPTHYVQHAAKAKKPTKAATTDKKRTKVAASN*
Ga0075425_1027240441	3300006854	Populus Rhizosphere	AWARKAIWGNVPSDIKNKIKGGLEALTSGQFVALWTERVERFMAREIEPPAHYVEHVSKAKKPKVAATDKKKKKIKVASR*
Ga0075434_1003721872	3300006871	Populus Rhizosphere	LTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075434_1003751871	3300006871	Populus Rhizosphere	VEALTSGQFIALWTERVNRFMARKVEPPTYYVQPVSKAKKLTQLAANKKKTKVAAAEKKK
Ga0075434_1006855472	3300006871	Populus Rhizosphere	KGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTKTAVTDKKKAKVAATGKKKTKVASR*
Ga0075434_1010617022	3300006871	Populus Rhizosphere	NVPADLKNKFKGGVNALTSGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKKTKSAAIKKEKTTKLEAR*
Ga0075434_1024158382	3300006871	Populus Rhizosphere	VNRFMARKVEPPTHYVQHTSKAKKRTQLVFRAKKKTQVAAAEKKN*
Ga0075424_1002786741	3300006904	Populus Rhizosphere	ALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT
Ga0075424_1005693401	3300006904	Populus Rhizosphere	LTSGQFIALWTERVNRFMARKVEPPTHYVQHATKAKKPTKAAVTDKKRTKVAAAK*
Ga0075424_1005947262	3300006904	Populus Rhizosphere	ALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTKTAVTDKKKAKVAATGKKKTKVASR*
Ga0075424_1027558751	3300006904	Populus Rhizosphere	EALTSGQFIALWTERVNRFMARKVEPPTHYVQHVSKAKKSTKAAVTDKKRTKVAATK*
Ga0075418_103329832	3300009100	Populus Rhizosphere	VPWDLKNKIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075418_123263511	3300009100	Populus Rhizosphere	TSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKRTQLVFRAKKKTQVAAAEKKN*
Ga0075418_130748311	3300009100	Populus Rhizosphere	SGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0114129_101273691	3300009147	Populus Rhizosphere	NKIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0114129_102337724	3300009147	Populus Rhizosphere	NRFMARKVEPPTHYVQHTSKAKKRTHLVFRAKKKTQVAAAEKKN*
Ga0114129_102817444	3300009147	Populus Rhizosphere	GVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTKTAVTDKKKTKVAVAEKMKT*
Ga0114129_113561981	3300009147	Populus Rhizosphere	TERVNRFMARKVEPPTHYVQHVSKPRKLTQLAANKKKTKVAAAEKKK*
Ga0114129_114725722	3300009147	Populus Rhizosphere	MGAQGDLGQRPVDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0114129_119778792	3300009147	Populus Rhizosphere	GQFIALWTERVNRFMARKVEPPTHYVQHVSKAKKSTKAAVTDKKRTKVAATK*
Ga0105243_108922452	3300009148	Miscanthus Rhizosphere	SDIKNKIKGGVDALTSGQFVALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0105243_117994681	3300009148	Miscanthus Rhizosphere	AWARKAIWGNVPSDIKNKIKGGLEALTSGQFVALWTERVERFMAREIEPPAHYVEHVSKAKKPKVTATDKKKKKIKVASR*
Ga0075423_101217921	3300009162	Populus Rhizosphere	KNKFKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYVHHTSKAKKPTQLVFRAKKKTQVAAAEKKNHHPYVGQAVP*
Ga0075423_103539151	3300009162	Populus Rhizosphere	GQERGEAWARKAIWGNVPWDLKNKIKGGVKALTSGQFIALWTERVNRFMARKVEPPTHYVQHASRAKKPTETAVTDKKKTKVAAAEKKKT*
Ga0075423_119967281	3300009162	Populus Rhizosphere	DLKNTIKGGLEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKSTKAAVTDKKRTKVAATK*
Ga0105104_102560321	3300009168	Freshwater Sediment	ALWTERVNRFMARRVEPPTHYVQHASKTKKLTQLAAKKKTTIAATK*
Ga0105104_105226162	3300009168	Freshwater Sediment	ALWTERVNRFMARRVEPPTHYVQHASKTKKLTQLTAKKKTKIAATK*
Ga0105104_109697042	3300009168	Freshwater Sediment	LKNKIKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKRTKVAATEKKKT*
Ga0126374_107194602	3300009792	Tropical Forest Soil	LWTERVNRFMTRRVEPPTHYVQHAAKAKKPTKAAATDKKRTKVAASN*
Ga0126374_115418681	3300009792	Tropical Forest Soil	TSGQFIALWTERVNRFMARKVEPPTHYVQHTSKANKATKAAATDKKRTKVAATK*
Ga0126384_120253951	3300010046	Tropical Forest Soil	IKNKIKGGVNALTSGQFIALWAERVERLMARKVEPPTHYVQHAAKAKKPTKAARSDKKRTKVAASN*
Ga0126382_106266383	3300010047	Tropical Forest Soil	ARKAIWGNVPSDLKNKIKGGVNALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSRAKKPTKAAVTAKKKTKVAATN*
Ga0126382_112861671	3300010047	Tropical Forest Soil	VNALTSGQFIALWTERVSRFMGRKVEPPTHYVQHASKAKKLTQKKTKVAAAK*
Ga0126382_125362121	3300010047	Tropical Forest Soil	IWGNVPWDLKKTIKGGVEALTSGQFIALWTERVNRFIARKVEPPTHYVQQVSKPRKLTQLAAKKKTKVAAAEKKKTEAALR*
Ga0126376_101021574	3300010359	Tropical Forest Soil	NVPADLKNKIKGGVETLTSGQFIALWAERVERFIARLVEPPTDYVERASKTKKPTKTAATDTQKTKGAAIDKKKTKVARS*
Ga0126376_123516571	3300010359	Tropical Forest Soil	IWGNVPSDIKNKIKGGVNALTSGQFIALWAERVERLMARKVEPPTHYVQHAAKAKKPTKAARSDKKRTKVAASN*
Ga0126378_121904852	3300010361	Tropical Forest Soil	EKWARKAIWGNVPSDLKNKIKGGVEALTSGQFIALWTERVNSFMARQVEPPTQYVQQVSSKAKKLTQTVLAAKKKTKVAATR*
Ga0126377_121104862	3300010362	Tropical Forest Soil	WGNVPWDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTYYVQHASKAKKPTQKKTQVAAAK*
Ga0126383_118324021	3300010398	Tropical Forest Soil	KIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHTSKAKKPTKAAVTDKKKTKVAAAK*
Ga0134123_102697571	3300010403	Terrestrial Soil	KNKIKGGVDALTSGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0138505_1000446771	3300010999	Soil	MARKVEPPAHYVQHASKAKRSTPLAATGKKKTGVAATDKKKKKTKVASR*
Ga0157346_10029961	3300012480	Arabidopsis Rhizosphere	SGQFLALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0157335_10019203	3300012492	Arabidopsis Rhizosphere	LTSGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNTKKKTKIAALAK*
Ga0157315_10456061	3300012508	Arabidopsis Rhizosphere	SGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNTKKKTKIAALAK*
Ga0164303_104893421	3300012957	Soil	SGQFLALWTERVYRFMRRKVEQPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0164303_111173192	3300012957	Soil	ERVNRFMARKVEPPTYYVQRVNKAHKLPQLTLTDKKKTKIDASK*
Ga0164299_116052891	3300012958	Soil	WGNVPSDIKNKIKGGVDALTSGQFIALWTERVNRFMARKVEPPTHYVQHAAQAKKPTKAATTDKKRTKVAASN*
Ga0126369_101333255	3300012971	Tropical Forest Soil	ALWTERVNRFMARQVEPPTQYVQQVSSKAKKLSQTVLAAKKKTKVAATR*
Ga0157373_103837613	3300013100	Corn Rhizosphere	ERVNRFMARKVEAPTRYVQPASKAKKQTKSVATGKQNTKSAEIKGDDQVKTQ*
Ga0157378_124600811	3300013297	Miscanthus Rhizosphere	LAIWTERVNRFMARMVEPPTDYVERASKANKPMKAAVIDKKQKTKVAAAEKKPRYRRG*
Ga0163162_100974057	3300013306	Switchgrass Rhizosphere	ALWTERVDSFMARNVEPPADYLQHASNAKKPTQLAVTGNNKTKVAATDKKKKKTKVA*
Ga0157377_111655092	3300014745	Miscanthus Rhizosphere	IALWTERVNRFIARKVEPPTEYVQHATKVKKATKFAASHKKKSKGAAIDKKKAPMG*
Ga0132257_1029761041	3300015373	Arabidopsis Rhizosphere	RKAIWGNVPWDIKNKIKGGVDALTSGEFIALWTERVNRFMARKVEPPTYYVQRVNKAHKLPQLTLTAKKKTKIAASK*
Ga0132257_1037803021	3300015373	Arabidopsis Rhizosphere	IKNKIKGGVDALTSGQFIALWTERVNRFMARKVEPPTHYVQHAAKAKKPTKAATSDKKRTKVAASN*
Ga0132255_1005279502	3300015374	Arabidopsis Rhizosphere	FMARKVEAPEHYVLPASKAKKSTLLAATKNKTKVAAPDKRKKKFKVASH*
Ga0132255_1022126552	3300015374	Arabidopsis Rhizosphere	WTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK*
Ga0184611_11022992	3300018067	Groundwater Sediment	GGLEALTSGQFIALWTERVNRFMAREVEPPAHYVQHASKAKTQLAVTGKKKANVATTDKKKKKTKVASR
Ga0184635_102971381	3300018072	Groundwater Sediment	KAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVNRFMAREVEPPAHYVQHASKAKTQLAVTGKKKANVATTDKKKKKTKVASQ
Ga0184624_104432531	3300018073	Groundwater Sediment	RKAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0193705_10930042	3300019869	Soil	KGGLEALTSGQFIALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0222621_11476601	3300021510	Groundwater Sediment	GGLEALTSGEFIALWTERVNRFMARKVEPPEHYVQHATKTQKLTQVALTAKKKTKVAAIA
Ga0222622_102552531	3300022756	Groundwater Sediment	KGQKWARKAIWGNVPSDLKNKLKGGLEALTSGEFIALWTERVNRFMARKVEPPEHYVQHATKTQKLTQVALTAKKKTKVAAIAK
Ga0222622_106309212	3300022756	Groundwater Sediment	VVENKLKGGLEALTSGEFIALWTERVNRFMARKVEPPTHYVQHATKTQKLTQVALTPKKKTKVAAIAK
Ga0207709_110744891	3300025935	Miscanthus Rhizosphere	MLTSGQFVALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK
Ga0207708_101505121	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	SDIKNKIKGGVDALTSGQFLALWTERVYRFMGRKVEPPTHYVQDASKAKKSIKAAVNAKKKTKIAALAK
Ga0209382_107839472	3300027909	Populus Rhizosphere	MGAQGDLGQRPVDLKNKIKGGVEALTSGQFIALWTERVNRFMARKVEPPTHYVQHASKAKKLTQKKTKVAAAK
Ga0307316_103229311	3300028755	Soil	ARKAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0307282_100720601	3300028784	Soil	FMARKVEPPTHYVQHASKAKKPTQLVLTAKKKTKVAVTEKKKTKVASR
Ga0307299_102534361	3300028793	Soil	KGQAWARKAIWGNVPSDLKNKIKGGLEALTSGQFIALWTERVDRFMARKVEPPAHYVQHASEAKKLTQLALTAKKKAKVAATEKKKTKIASR
Ga0307287_102387522	3300028796	Soil	EALTSGQFIALWTERVDRFMARNLEPPTHYKQHASKAKKLQLVLTAKKKTKVAATK
Ga0307296_100811081	3300028819	Soil	ARKAIWGNVPSDLKNKIEGGVEALTSGQFIALWTERVDRFMARKVEPPAHYVQHASEAKKLTQLALTAKKKAKVAATEKKKTKIASR
Ga0307296_101408391	3300028819	Soil	KNKIKGGLDALTSGQFVALWTERVNRFMARKVEPPTQYVQHAKKPKVAATDKKKKKTKVASR
Ga0307296_104902441	3300028819	Soil	SGQFIALWTERVNRFMARKVEPPTQYVQHASKAKKPTKLSATGKKKTKGAAIKNEKMTKLEAR
Ga0307312_105894922	3300028828	Soil	MARRVEPPTHYVQHASKAKKPTKAAVTDKKTKVAAAEKKKT
Ga0307308_100818331	3300028884	Soil	ARKAIWGNVPSDLKNKLKGGLEALTSGEFIALWTERVNRFMARKVEPPTHYVQHATKTQKLTQVALTPKKKTKVAAIAK
Ga0308194_100226672	3300031421	Soil	QGHLGQRLKNKLKGGLEALTSGEFIALWTERVNRFMARKVEPPEHYVQHATKTQKLTQVALTAKKKTKVAAIAK
Ga0310888_107879911	3300031538	Soil	VPWDIKNKIKGGVEALTSGEFIALWTERVNRFMARKVEPPAYYVQRVNKAHKLPQLTLTAKKKTKIAASK
Ga0307469_124162561	3300031720	Hardwood Forest Soil	KWARKAIWGNVPSDIKNKIKGGVDALTSGQFVALWTERVYRFMGRKVEPPMHYVQDASKAKKSIKAAVNAKKKTKIAALAK
Ga0310899_107059492	3300032017	Soil	IKNKIKGGVDALTSGQFLALWTERVYRFMGRKVEPPTHYVQGASKAKKSIKAAVNAKKKTKIAALAK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065997

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences