NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F065980

Metagenome / Metatranscriptome Family F065980

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F065980
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 73 residues
Representative Sequence YRKKYAHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRLNHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY
Number of Associated Samples 110
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 85.04 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(11.811 % of family members)
Environment Ontology (ENVO) Unclassified
(27.559 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.630 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 13.59%    β-sheet: 43.69%    Coil/Unstructured: 42.72%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF07690MFS_1 37.80
PF04892VanZ 8.66
PF00478IMPDH 3.94
PF10503Esterase_PHB 1.57
PF03118RNA_pol_A_CTD 1.57
PF00571CBS 1.57
PF01522Polysacc_deac_1 0.79
PF00557Peptidase_M24 0.79
PF02576RimP_N 0.79
PF08974DUF1877 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunitTranscription [K] 1.57
COG0726Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 familyCell wall/membrane/envelope biogenesis [M] 0.79
COG0779Ribosome maturation factor RimPTranslation, ribosomal structure and biogenesis [J] 0.79

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001546|JGI12659J15293_10056365All Organisms → cellular organisms → Bacteria → Acidobacteria887Open in IMG/M
3300001593|JGI12635J15846_10855546All Organisms → cellular organisms → Bacteria → Acidobacteria520Open in IMG/M
3300003219|JGI26341J46601_10127487All Organisms → cellular organisms → Bacteria → Acidobacteria724Open in IMG/M
3300003505|JGIcombinedJ51221_10056478All Organisms → cellular organisms → Bacteria → Acidobacteria1504Open in IMG/M
3300004092|Ga0062389_101036060All Organisms → cellular organisms → Bacteria → Acidobacteria1006Open in IMG/M
3300004092|Ga0062389_104969767All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300004152|Ga0062386_100501143All Organisms → cellular organisms → Bacteria → Acidobacteria986Open in IMG/M
3300004635|Ga0062388_100063264All Organisms → cellular organisms → Bacteria2483Open in IMG/M
3300005174|Ga0066680_10748941All Organisms → cellular organisms → Bacteria → Acidobacteria594Open in IMG/M
3300005176|Ga0066679_10517399All Organisms → cellular organisms → Bacteria → Acidobacteria777Open in IMG/M
3300005331|Ga0070670_100018877All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter5913Open in IMG/M
3300005534|Ga0070735_10179908All Organisms → cellular organisms → Bacteria → Acidobacteria1301Open in IMG/M
3300005541|Ga0070733_10666554All Organisms → cellular organisms → Bacteria → Acidobacteria698Open in IMG/M
3300005555|Ga0066692_10797486All Organisms → cellular organisms → Bacteria → Acidobacteria581Open in IMG/M
3300005591|Ga0070761_10541101All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300005598|Ga0066706_10014581All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4527Open in IMG/M
3300005602|Ga0070762_10174213All Organisms → cellular organisms → Bacteria1302Open in IMG/M
3300005602|Ga0070762_10432190All Organisms → cellular organisms → Bacteria → Acidobacteria853Open in IMG/M
3300005618|Ga0068864_102684727All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300005921|Ga0070766_10047188All Organisms → cellular organisms → Bacteria2409Open in IMG/M
3300005921|Ga0070766_11090507All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300006176|Ga0070765_100250894All Organisms → cellular organisms → Bacteria → Acidobacteria1622Open in IMG/M
3300006176|Ga0070765_100735355All Organisms → cellular organisms → Bacteria → Acidobacteria932Open in IMG/M
3300006176|Ga0070765_100961895All Organisms → cellular organisms → Bacteria → Acidobacteria807Open in IMG/M
3300006237|Ga0097621_100499682All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1101Open in IMG/M
3300007258|Ga0099793_10573329All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300007788|Ga0099795_10338363All Organisms → cellular organisms → Bacteria → Acidobacteria670Open in IMG/M
3300009090|Ga0099827_11106946All Organisms → cellular organisms → Bacteria → Acidobacteria688Open in IMG/M
3300009518|Ga0116128_1225862All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300009623|Ga0116133_1004827All Organisms → cellular organisms → Bacteria3438Open in IMG/M
3300009662|Ga0105856_1242501All Organisms → cellular organisms → Bacteria → Acidobacteria583Open in IMG/M
3300009700|Ga0116217_10776844All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300010379|Ga0136449_102804042All Organisms → cellular organisms → Bacteria → Acidobacteria688Open in IMG/M
3300010379|Ga0136449_102873828All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300010379|Ga0136449_103067280All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300011269|Ga0137392_10502036All Organisms → cellular organisms → Bacteria → Acidobacteria1008Open in IMG/M
3300011270|Ga0137391_10814310All Organisms → cellular organisms → Bacteria → Acidobacteria769Open in IMG/M
3300011271|Ga0137393_10319963All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1322Open in IMG/M
3300012349|Ga0137387_10683143All Organisms → cellular organisms → Bacteria → Acidobacteria743Open in IMG/M
3300012362|Ga0137361_11349697All Organisms → cellular organisms → Bacteria → Acidobacteria637Open in IMG/M
3300014489|Ga0182018_10144706All Organisms → cellular organisms → Bacteria → Acidobacteria1361Open in IMG/M
3300014501|Ga0182024_11584318All Organisms → cellular organisms → Bacteria → Acidobacteria743Open in IMG/M
3300014969|Ga0157376_10951124All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300015371|Ga0132258_11086507All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2022Open in IMG/M
3300015372|Ga0132256_101294739All Organisms → cellular organisms → Bacteria → Acidobacteria842Open in IMG/M
3300017822|Ga0187802_10336110All Organisms → cellular organisms → Bacteria → Acidobacteria592Open in IMG/M
3300017823|Ga0187818_10064749All Organisms → cellular organisms → Bacteria1574Open in IMG/M
3300017931|Ga0187877_1291773All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M
3300017946|Ga0187879_10045744All Organisms → cellular organisms → Bacteria2588Open in IMG/M
3300017946|Ga0187879_10110155All Organisms → cellular organisms → Bacteria → Acidobacteria1574Open in IMG/M
3300017955|Ga0187817_10097146All Organisms → cellular organisms → Bacteria1851Open in IMG/M
3300017972|Ga0187781_10310304All Organisms → cellular organisms → Bacteria → Acidobacteria1120Open in IMG/M
3300017972|Ga0187781_10830059All Organisms → cellular organisms → Bacteria → Acidobacteria672Open in IMG/M
3300018020|Ga0187861_10259288All Organisms → cellular organisms → Bacteria → Acidobacteria756Open in IMG/M
3300018030|Ga0187869_10034716All Organisms → cellular organisms → Bacteria2755Open in IMG/M
3300018035|Ga0187875_10569334All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300018042|Ga0187871_10584484All Organisms → cellular organisms → Bacteria → Acidobacteria619Open in IMG/M
3300018057|Ga0187858_10552843All Organisms → cellular organisms → Bacteria → Acidobacteria698Open in IMG/M
3300018062|Ga0187784_10786587All Organisms → cellular organisms → Bacteria → Acidobacteria759Open in IMG/M
3300018090|Ga0187770_11248732All Organisms → cellular organisms → Bacteria → Acidobacteria601Open in IMG/M
3300020010|Ga0193749_1051908All Organisms → cellular organisms → Bacteria → Acidobacteria784Open in IMG/M
3300020581|Ga0210399_10301454All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1337Open in IMG/M
3300020583|Ga0210401_10299265All Organisms → cellular organisms → Bacteria → Acidobacteria1469Open in IMG/M
3300021168|Ga0210406_10009318All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis9764Open in IMG/M
3300021401|Ga0210393_10324514All Organisms → cellular organisms → Bacteria → Acidobacteria1252Open in IMG/M
3300021401|Ga0210393_10438676All Organisms → cellular organisms → Bacteria → Acidobacteria1065Open in IMG/M
3300021403|Ga0210397_10640806All Organisms → cellular organisms → Bacteria → Acidobacteria814Open in IMG/M
3300021404|Ga0210389_10318386All Organisms → cellular organisms → Bacteria → Acidobacteria1220Open in IMG/M
3300021405|Ga0210387_11706167All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300021407|Ga0210383_11244524All Organisms → cellular organisms → Bacteria → Acidobacteria624Open in IMG/M
3300021407|Ga0210383_11772405All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300021420|Ga0210394_10107602All Organisms → cellular organisms → Bacteria2413Open in IMG/M
3300021420|Ga0210394_10878538All Organisms → cellular organisms → Bacteria → Acidobacteria781Open in IMG/M
3300021478|Ga0210402_10779282All Organisms → cellular organisms → Bacteria → Acidobacteria881Open in IMG/M
3300021479|Ga0210410_10098093All Organisms → cellular organisms → Bacteria2586Open in IMG/M
3300022533|Ga0242662_10204433All Organisms → cellular organisms → Bacteria → Acidobacteria623Open in IMG/M
3300023090|Ga0224558_1091587All Organisms → cellular organisms → Bacteria → Acidobacteria1086Open in IMG/M
3300024225|Ga0224572_1052453All Organisms → cellular organisms → Bacteria → Acidobacteria759Open in IMG/M
3300025412|Ga0208194_1002816All Organisms → cellular organisms → Bacteria3396Open in IMG/M
3300025473|Ga0208190_1000184All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis25071Open in IMG/M
3300025899|Ga0207642_10765333All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300025936|Ga0207670_10007141All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6224Open in IMG/M
3300026142|Ga0207698_11232200All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae762Open in IMG/M
3300026304|Ga0209240_1110860All Organisms → cellular organisms → Bacteria961Open in IMG/M
3300026328|Ga0209802_1125784All Organisms → cellular organisms → Bacteria → Acidobacteria1119Open in IMG/M
3300026548|Ga0209161_10214833All Organisms → cellular organisms → Bacteria → Acidobacteria1046Open in IMG/M
3300027383|Ga0209213_1072899All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
3300027684|Ga0209626_1172077All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300027812|Ga0209656_10042309All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2626Open in IMG/M
3300027829|Ga0209773_10040122All Organisms → cellular organisms → Bacteria → Acidobacteria1876Open in IMG/M
3300027829|Ga0209773_10335019All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
3300027854|Ga0209517_10521999All Organisms → cellular organisms → Bacteria → Acidobacteria643Open in IMG/M
3300027855|Ga0209693_10582498All Organisms → cellular organisms → Bacteria → Acidobacteria529Open in IMG/M
3300027867|Ga0209167_10177616All Organisms → cellular organisms → Bacteria → Acidobacteria1127Open in IMG/M
3300027875|Ga0209283_10467789All Organisms → cellular organisms → Bacteria → Acidobacteria815Open in IMG/M
3300027884|Ga0209275_10319175All Organisms → cellular organisms → Bacteria → Acidobacteria865Open in IMG/M
3300027889|Ga0209380_10045088All Organisms → cellular organisms → Bacteria2499Open in IMG/M
3300027889|Ga0209380_10402578All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → unclassified Pirellulaceae → Pirellulaceae bacterium803Open in IMG/M
3300027895|Ga0209624_10539266All Organisms → cellular organisms → Bacteria → Acidobacteria776Open in IMG/M
3300028746|Ga0302233_10332103All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
3300028776|Ga0302303_10297734All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300028863|Ga0302218_10137700All Organisms → cellular organisms → Bacteria → Acidobacteria772Open in IMG/M
3300028866|Ga0302278_10045478All Organisms → cellular organisms → Bacteria → Acidobacteria2792Open in IMG/M
3300028906|Ga0308309_10737064All Organisms → cellular organisms → Bacteria → Acidobacteria856Open in IMG/M
3300028909|Ga0302200_10238016All Organisms → cellular organisms → Bacteria → Acidobacteria895Open in IMG/M
3300029910|Ga0311369_10392502All Organisms → cellular organisms → Bacteria → Acidobacteria1207Open in IMG/M
3300029911|Ga0311361_10780864All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium852Open in IMG/M
3300029951|Ga0311371_11463892All Organisms → cellular organisms → Bacteria → Acidobacteria764Open in IMG/M
3300030007|Ga0311338_10568576All Organisms → cellular organisms → Bacteria → Acidobacteria1173Open in IMG/M
3300030524|Ga0311357_11269060All Organisms → cellular organisms → Bacteria → Acidobacteria634Open in IMG/M
3300030617|Ga0311356_11039982All Organisms → cellular organisms → Bacteria → Acidobacteria763Open in IMG/M
3300030878|Ga0265770_1070262All Organisms → cellular organisms → Bacteria → Acidobacteria667Open in IMG/M
3300031028|Ga0302180_10158704All Organisms → cellular organisms → Bacteria → Acidobacteria1248Open in IMG/M
3300031028|Ga0302180_10514142All Organisms → cellular organisms → Bacteria → Acidobacteria585Open in IMG/M
3300031057|Ga0170834_107973624All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300031233|Ga0302307_10309756All Organisms → cellular organisms → Bacteria → Acidobacteria807Open in IMG/M
3300031234|Ga0302325_10265898All Organisms → cellular organisms → Bacteria2833Open in IMG/M
3300031524|Ga0302320_10725778All Organisms → cellular organisms → Bacteria → Acidobacteria1121Open in IMG/M
3300031708|Ga0310686_101585676All Organisms → cellular organisms → Bacteria2983Open in IMG/M
3300031708|Ga0310686_105592041All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1792Open in IMG/M
3300031718|Ga0307474_11314994All Organisms → cellular organisms → Bacteria → Acidobacteria570Open in IMG/M
3300031823|Ga0307478_10174465All Organisms → cellular organisms → Bacteria1718Open in IMG/M
3300032160|Ga0311301_12135294All Organisms → cellular organisms → Bacteria → Acidobacteria646Open in IMG/M
3300032828|Ga0335080_11174815All Organisms → cellular organisms → Bacteria → Acidobacteria773Open in IMG/M
3300034124|Ga0370483_0107357All Organisms → cellular organisms → Bacteria → Acidobacteria922Open in IMG/M
3300034163|Ga0370515_0151585All Organisms → cellular organisms → Bacteria → Acidobacteria994Open in IMG/M
3300034163|Ga0370515_0163092All Organisms → cellular organisms → Bacteria → Acidobacteria954Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.81%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil10.24%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa9.45%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.09%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland6.30%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil6.30%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.72%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.72%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.15%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.15%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.15%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.15%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.36%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.36%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil2.36%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.57%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.79%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.79%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.79%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.79%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.79%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.79%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.79%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.79%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.79%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.79%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.79%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.79%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.79%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009662Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060EnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018020Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300020010Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s2EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300023090Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24EnvironmentalOpen in IMG/M
3300024225Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5Host-AssociatedOpen in IMG/M
3300025412Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025473Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027383Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027684Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028746Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028863Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300028909Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1EnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029911III_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030524II_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030878Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031028Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031233Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300034124Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12659J15293_1005636523300001546Forest SoilRKYAHFICNSEAQHPLLSWDLAEWESAPPLTILHYRGRRLTKPGESATYRELFTVTTENKDGQWVVTKYDAMY*
JGI12635J15846_1085554623300001593Forest SoilEHDYRKKYAHFICDSEKQHPLLSWELAEWESNPPLTILHYRGKRLNNPGQPATYKEIFTVTTENKDGQWVVTKYDSMY*
JGI26341J46601_1012748723300003219Bog Forest SoilYRKKYAHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRLNHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY*
JGIcombinedJ51221_1005647813300003505Forest SoilDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTGPGQSTTYRELFTVTEENKDGQWLVSKYDAMY*
Ga0062389_10103606013300004092Bog Forest SoilLLSQWEHDYRKKYAHFICDSEAKHPLLSWELAEWESTPPLTILHYRGKRQYGGGQPGTYQELFTVTTEKKEGQWMVTKYDAMY*
Ga0062389_10496976713300004092Bog Forest SoilLSSWERDYRKKYAHFICDSEAKHPLLSWDLAEWESAPPLTILHYRGKRLSQAGQAGTYRELFTVTTENKDGQWVVTKYDAMY*
Ga0062386_10050114313300004152Bog Forest SoilICDSEKQHPLLSWELAEWETAPPLTILHYRGKRLNSPSQSGTYRELFTVTTENKDGQWVVTKYDAMY*
Ga0062388_10006326433300004635Bog Forest SoilLANWERDYHKKYARYICASETQHPLISWELVEWEEARPLIILHYRGKRESSSGAPDKELFTVTTEHKNGEWVVTKYDAMY*
Ga0066680_1074894123300005174SoilQELTKWEKDYRKKYAAFICGSEMRHPLLVWELVDWEDAAPLRILHYRGTRRGQNGTYKELFSVTTELKDGEWVVTKYDAMY*
Ga0066679_1051739923300005176SoilFICNSEAQHPLLSWKLAEWESAPPLTILHYRGERQYGGGQAGTYQELFTVTTENKDGQWVVTKYDAMY*
Ga0070670_10001887713300005331Switchgrass RhizosphereKYASFICESEALHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY*
Ga0070735_1017990813300005534Surface SoilYRKKYAHFICDSEAKHPLVSWELAEWESAPPLTILHYRGKRQYGGGQPGTYKELFTVTTENKDGQWVVTKYDAMY*
Ga0070733_1066655413300005541Surface SoilEAKHPLLSWELAEWESKPPLTILHYRGKRLNSPGQAGTYKELFTVTTENKGGLWVVTKYDAMY*
Ga0066692_1079748623300005555SoilYAAFICGSEMRHPLLVWELVDWEDAAPLRILHYRGTRRGQNGTYKELFSVTTELKDGEWVVTKYDAMY*
Ga0070761_1054110123300005591SoilRRKYAHFICNSEAQHPLLSWDLAEWESAPPLTILHYRGRRLTKPGESATYRELFTVTTENKDGQWVVTKYDAMY*
Ga0066706_1001458113300005598SoilAQHPLLSWELVEWEQAPPLVILHYRGKRSNGPSQSGTYKELFTVTTENKGSEWVVTKYDAMY*
Ga0070762_1017421313300005602SoilPLLSWELAEWESAAPLTILHYRGKRLTGPGQSTTYRELFTVTTENKDGQWVVTKYDAMY*
Ga0070762_1043219033300005602SoilHDYRKKYAHFICDSETQHPLLSWELAEWESAPPLTILHYRGKRLNHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY*
Ga0068864_10268472723300005618Switchgrass RhizosphereWSKDYRKKYASFICESEALHPLLSWELADREDAPPLVILHYRGKRQTVAGQDATYQELFSVTTENKEGDWVVTKYDAMY*
Ga0070766_1004718843300005921SoilQHPLLSWELAEWETAPPLTILQYRGKRLNHAGQPGTYKELLTITTENKDGQWVVTKYDSMY*
Ga0070766_1109050713300005921SoilARYICASEAQHPLISWELVEWEEAPPLIILHYRGKRESSTGATDKELFTVTTENKNGEWIVTKYDAMY*
Ga0070765_10025089413300006176SoilGWEHDYRKKYAHFICNSETQHPLLSWELAEWESAPPLTILHYRGKRLTSLSQSGTYKELFTVTEENKDGLWVVTKYDAMY*
Ga0070765_10073535513300006176SoilLLSGWEHDYRKKYAHFICDSEAKHPLLSWELAEWESNPPLTILHYRGKRLNSAGQPGTYKELFTVTTENKDGQWVVTKYDAMY*
Ga0070765_10096189533300006176SoilTQHPLLSWELAEWESAPPLTILHYRGKRLNHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY*
Ga0097621_10049968233300006237Miscanthus RhizosphereSFICESEALHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY*
Ga0099793_1057332923300007258Vadose Zone SoilEGHCNDLLSQWEHDYRKKYAHFICDSEAQHPLVSWELVEWEEAPPLIILHYRGKRSNGPSPSGTYKELFTVTTENKGGDWVVTKYDAMY*
Ga0099795_1033836323300007788Vadose Zone SoilQHPLVSWELVEWEEAPPLIILHYRGKRSNGPSPSGTYKELFTVTAGNKGGEWVVTKYYAMY*
Ga0099827_1110694623300009090Vadose Zone SoilAAFICDSEMRQPLLVWELVDWEDAAPLRILHYRGTRRNLAGENRTYKELFSVTTELKDGEWVVTKYDAMY*
Ga0116128_122586223300009518PeatlandWEHDYRKKYAHFICDSEAQHPLVSWELAEWESASPLTILHYRGKRLDHAGQPGTYQELFTVTTENKNGQWMVTKYDAMY*
Ga0116133_100482713300009623PeatlandYAHFICDSEAQHPLVSWELAEWESASPLTILHYRGKRLDHAGQPGTYQELFTVTTENKNGQWMVTKYDAMY*
Ga0105856_124250123300009662Permafrost SoilYRKKYAHFICDSEAQHPLLSWDLVEWEAAPPLIILHYRGKRRNAAGQPGTYQELFTVTTENKGGEWLVTKYDAMY*
Ga0116217_1077684413300009700Peatlands SoilQYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRRYGSGQAGTYQELFTVTTENKNGQWVVTKYDAMY*
Ga0136449_10280404223300010379Peatlands SoilWEHDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTGPGQSGTYKELFTVTTENKDGQWVVTKYDAMY*
Ga0136449_10287382823300010379Peatlands SoilEAQHPLLSWELAEWESAPPLTILHYRGKRLTGPGQSGTYKELFTVTTENKDGQWVVTKYDAMY*
Ga0136449_10306728013300010379Peatlands SoilEAQHPLLSWELAEWESAPPLTILHYRGKRLTGPGQSATYKELFTVTTENKDGQWVVTKYDAMY*
Ga0137392_1050203623300011269Vadose Zone SoilQWEHDYRKKYAHFICDSEAQHPLVSWELVEWEEAPPLIILHYRGKRSNGPSPSGTYKELFTVTTENKGGDWVVTKYDAMY*
Ga0137391_1081431023300011270Vadose Zone SoilAAFICDSEMRHPLLVWELVDWEDAAPLRILHYRGTRRNLAGENRTYKELFSVTTELKDGEWVVTKYDAMY*
Ga0137393_1031996333300011271Vadose Zone SoilSKWEHDYRKKYAHFICNSEKEHPLLSWELAEWESAPPLTILHYRGKRQYGGGQPGTYQELFTVTTENKAGQWVVTKYDAMY*
Ga0137387_1068314313300012349Vadose Zone SoilDLLSQWEHDYRKKYAHFICDSEAQHPLLSWELVEWEQAPPLVILHYRGKRSNGPSQSGTYKELFTVTTENKGGEWVVTKYDAMY*
Ga0137361_1134969723300012362Vadose Zone SoilLSQWEHDYRKKYAHFICDSEAQHPLLSWELVEWEQAPPLVILHYRGKRSNGPSQSGTYKELFTVTTENKGGEWVVTKYDAMY*
Ga0182018_1014470623300014489PalsaVLSGWEHDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILQYRGKRLNQAGQPGTYQELLTVTTENKDGQWVVTKYDSMY*
Ga0182024_1158431823300014501PermafrostEWEHDYRKKYAHFICDSEAQHPLVSWELAEWESAPPLTILHYRGKRLNHAGQSGTYQELFTVTTENKDGQWMVTKYDAMY*
Ga0157376_1095112413300014969Miscanthus RhizosphereGHCRDVLARWEKDYRKKYASFICESEAQHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY*
Ga0132258_1108650733300015371Arabidopsis RhizosphereARWEKDYRKKYASFICESEALHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY*
Ga0132256_10129473913300015372Arabidopsis RhizosphereEMRDGHCRDVLARWEKDYRKKYASFICESEAQHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY*
Ga0187802_1033611023300017822Freshwater SedimentYAHFICDSEAQHPLVTWELAEWESAPPLTILHYRGKRLNHAGQSGTYQELFTVTTENKDGEWVVTKYDAMY
Ga0187818_1006474933300017823Freshwater SedimentAHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRRNGNGQPGTYQELFTVTTEHKDGLWVVTKYDAMY
Ga0187877_129177323300017931PeatlandAQHPLVSWELAEWESASPLTILHYRGKRLDHAGQPGTYQELFTVTTENKNGQWMVTKYDAMY
Ga0187879_1004574443300017946PeatlandHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRSYGNGKPGTYQELCTVTTEDKDGQWVVTKYDAMY
Ga0187879_1011015523300017946PeatlandYRKKYAHFICDSEAKHPLLSWELAEWESAPPLTILHYRGKRRYGNGQPGTYQELFTVTTENKEGHWVVTKYDAMY
Ga0187817_1009714633300017955Freshwater SedimentYAHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRRNGNGQPGTYQELFTVTTEHKDGLWVVTKYDAMY
Ga0187781_1031030413300017972Tropical PeatlandHYICNSEAQHPLLSWELAEWEVAPPLTILQYRGKRLNSPGQRDTYTEVFTVTTERKSGQWVVTKYDAMY
Ga0187781_1083005923300017972Tropical PeatlandDWEHDYRKKYARFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTSPSQPGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0187861_1025928823300018020PeatlandWEHDYRKKYAHFICDSEAQHPLVSWELAEWESASPLTILHYRGKRLDHAGQPGTYQELFTVTTENKNGQWMVTKYDAMY
Ga0187869_1003471643300018030PeatlandLLSEWEHDYRKKYAHFICDSEAQHPLVSWELAEWESASPLTILHYRGKRLDHAGQPGTYQELFTVTTENKNGQWMVTKYDAMY
Ga0187875_1056933423300018035PeatlandSEKQHPLLSWELAEWETAPPLTILHYRGKRLNSPSQSSTYHELFTVTTENKDGQWVVTKYDAMY
Ga0187871_1058448413300018042PeatlandHFICDSEAQHPLISWELAEWESAPPLTILHYRGKRSNGNGQTGTDQDLFTVTTENKDGQWVVTKYDAMY
Ga0187858_1055284313300018057PeatlandRKKYAHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRRYGNGQPGTYQELFTVTTENKDGHWVVTKYDAMY
Ga0187784_1078658713300018062Tropical PeatlandLLSEWEHDYRKKYAHYICNSEAQHPLLSWELAEWEVASPLTILHYRGKRLNHAGELGTYKELFTVTLDRKDGQLVVTKYDAMY
Ga0187770_1124873213300018090Tropical PeatlandRDGRCDQLLSQWEHDYRKKYAHFICDSEAQHPLVSWELAEWESAPPLTILHYRGKRRYGNGQAGTYQELFTVTAENKDGQWVVTKYDAMY
Ga0193749_105190823300020010SoilEHDYRKKYAHFICDSEAQHPLLSWELVEWEQAPPLVILHYRGKRSNGPSQSGTYKELFTVTTENKGGEWVVTKYDAMY
Ga0210399_1030145413300020581SoilSEKQHPLLSWELAEWESAPPLTILHYRGKRSYGASQPGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0210401_1029926523300020583SoilFICDSEAKHPLLSWDLAEWESAPPLTILHYRGKRLSQVGQPGTYRELFTVTTENKAGQWVVTKYDAMY
Ga0210406_1000931893300021168SoilFICDSEAKHPLISWELAEWENAPPLTILHYRGKRNYGAGQSGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0210393_1032451423300021401SoilQLLSGWEHDYRKKYAHFICDSETQHPLLSWELAEWESAPPLTILHYRGKRLNHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY
Ga0210393_1043867633300021401SoilWERDYHKKYARYICASETQHPLISWELVEWEEAPPLIILHYRGKRESSSGAPDKELFTVTTENKNGEWVVTKYDAMY
Ga0210397_1064080613300021403SoilCDSEAQHPLLSWEIAEWESAPPLTILHYRGRRSYGAGKPGNYQELFTVTTENKDGQWVVTKYDAMY
Ga0210389_1031838613300021404SoilHDYRKKYAHFICDSEAKHPLISWELAEWENAPPLTILHYRGKRNYGAGQSGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0210387_1170616723300021405SoilAHFICNSEAQHPLLSWELVEWEETPPLIILHYRATRSNVAGQAGTYQDLFTVTTENKNGNWMVTKYDAMY
Ga0210383_1124452413300021407SoilHDYRKKYAHFICNSEAQHPLLSWDLAEWESAAPLTILHYRGKRLTGPGQSTTYRELFTVTEENKDGQWVVTKYDAMY
Ga0210383_1177240513300021407SoilSGWEHDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTGPGQSTTYRELFTVTEENKDGQWLVSKYDAMY
Ga0210394_1010760233300021420SoilELLHDWEHDYRRKYAHFICNSEAQHPLLSWDLAEWESAPPLTILHYRGRRLTKPGESATYRELFTVTTENKDGQWVVTKYDAMY
Ga0210394_1087853823300021420SoilDGHCDELLAGWEHDYRKKYAHFICNSEAQHPLLSWELAEWESAAPLTILHYRGKRLTGPSQSSTYRELFTVTEENKDGQWVVTKYDAMY
Ga0210402_1077928213300021478SoilSEAKHPLLSWELAEWESAPPLTILHYRGKRLNSPGQDGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0210410_1009809353300021479SoilHKKYAKYICSSEAQHPLLSWDLVEWEERPPLIILHYRGDRENNAGQAGTYKGLLTVTTENRGGGWVVTKYDAMY
Ga0242662_1020443313300022533SoilLLYEWEHDYRKKYAHFICDSEKQHPLLSWELAEWESAPPLTILHYRGKRNYGASQPGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0224558_109158733300023090SoilICNSEAQHPLLSWELAEWESAPPLTILHYRGKRRYGSGQAGTYQELFTVTTENKDGQWVVTKYDAMY
Ga0224572_105245313300024225RhizosphereRDYHKKYARYICASETQHPLISWELVEWEEAPPLIILHYRGKRESSSGAPDKELFTVTTENKNGEWVVTKYDAMY
Ga0208194_100281613300025412PeatlandYAHFICDSEAQHPLVSWELAEWESASPLTILHYRGKRLDHAGQPGTYQELFTVTTENKNGQWMVTKYDAMY
Ga0208190_1000184243300025473PeatlandYAHFICDSEAKHPLLSWELAEWESAPPLTILHYRGKRLNGPGQTGTYRELLTVTTENKDGLWVVTKYDPND
Ga0207642_1076533313300025899Miscanthus RhizosphereWEKDYRRKYASFICESEALHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY
Ga0207670_1000714113300025936Switchgrass RhizosphereHCRDVLARWEKDYRRKYASFICESEALHPLVSWELADREDAPPLVILHFRGDRQTTAGQDPTYKELFSVTTENKDGEWVVTKYDAMY
Ga0207698_1123220013300026142Corn RhizosphereRWSTDYRKKYASFICESEALHPLLSWELADREDAPPLVILHYRGKRQTVAGQDATYQELFSVTTENKEGDWV
Ga0209240_111086033300026304Grasslands SoilKYAHFICDSEAQHPLLSWELVDWEDAPPLIILHYRGKRRNSTDQPGIYQELFTVTAENKGGEWVVTKYDAMY
Ga0209802_112578413300026328SoilYRKKYAAFICGSEMRHPLLVWELVDWEDAAPLRILHYRGTRRGQNGTYKELFSVTTELKDGEWVVTKYDAMY
Ga0209161_1021483313300026548SoilAQHPLLSWELVEWEQAPPLVILHYRGKRSNGPSQSGTYKELFTVTTENKGSEWVVTKYDAMY
Ga0209213_107289913300027383Forest SoilKKYAHFICDSEAQHPLLSWELVEWEEGPPLVILHYRGKRSNGPSQSGTYKELFTITTENKGGEWVVTKYDAMY
Ga0209626_117207723300027684Forest SoilTKWEHDYRKKYAHFICDSEKQHPLLSWNLAEWESAPPLTILHYHGKRQYGGGQPGTYEELFTVTTEKKNSEWVVTKYDAMY
Ga0209656_1004230913300027812Bog Forest SoilDYRKKYAHFICNSETQHPLLSWELAEWESAPPLTILHYRGKRLTGPSQSATYRELFTVTEENKDGQWVVTKYDAMY
Ga0209773_1004012213300027829Bog Forest SoilQHPLLSWELAEWESAPPLTILHYRGKRLTSPGQSATYRELFTVTEENKDGQWLVSKYDAM
Ga0209773_1033501913300027829Bog Forest SoilRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTSPDQSTTYRELFTVTEENKDGQWLVSKYDAMY
Ga0209517_1052199923300027854Peatlands SoilHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRRYGSGQAGTYQELFTVTTENKNGQWVVTKYDAMY
Ga0209693_1058249813300027855SoilNSEAQHPLLSWELAEWESAAPLTILHYRGKRLTGPGQSTTYRELFTVTTENKDGQWVVTKYDAMY
Ga0209167_1017761623300027867Surface SoilEAQHPLLSWELAEWEAAPPLTILHYRGKREYGGGKPGTYTELFTVTTENKDGQWVVTKYDAMY
Ga0209283_1046778923300027875Vadose Zone SoilHDYRKKYAHFICNSEKEHPLLSWELAEWESAPPLTILHYRGRRSYGAGQPGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0209275_1031917513300027884SoilWEHDYRKKYAHFICDSETQHPLLSWELAEWESAPPLTILHYRGKRLNHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY
Ga0209380_1004508813300027889SoilAQHPLLSWELAEWETAPPLTILQYRGKRLNHAGQPGTYKELLTITTENKDGQWVVTKYDSMY
Ga0209380_1040257823300027889SoilAHFICNSEVQHPLLSWELAEWESAPPLTILHYRGKRLTTAGQSGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0209624_1053926633300027895Forest SoilEHDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKREYGKGQAGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0302233_1033210313300028746PalsaYARYICASEAQHPLISWELVEWEEAPPLIILHYRGKRESSSGAPDKELFTVTTENKNGEWIVTNYDAMY
Ga0302303_1029773423300028776PalsaSEAQHPLLSWDLAEWESAPPLTILHYRGKRLNSPGQSSTYKELFTVTTENKDGQWVVTKYDAMY
Ga0302218_1013770013300028863PalsaDDLLSTWEHDYRKKYAHFICTSEAQHPLLSWELAEWESAPPLTILHYRGKRLNSPNQPGTYKELFTVTAENKDGQWVVTKYDAMY
Ga0302278_1004547813300028866BogSEAKHPLLSWELAEWESKPPLTILHYRGKRLTDPGQPATYKEIFTVTTENKDGQWVVTKYDSMY
Ga0308309_1073706413300028906SoilYAHFICDSETQHPLLSWELAEWESAPPLTILHYRGKRLSHAGQPGTYQELFTVTTENKDGEWVVTKYDAMY
Ga0302200_1023801633300028909BogEAKHPLLSWELAEWESKPPLTILHYRGKRLTDPGQPATYKEIFTVTTENKDGQWVVTKYDSMY
Ga0311369_1039250223300029910PalsaRKKYAHFICNSEAQHPLLSWDLAEWESAPPLTILHYRGKRLNSPGQSSTYKELFTVTTENKDGQWVVTKYDAMY
Ga0311361_1078086413300029911BogICDSEKQHPLLSWELAEWETAPPLTILHYRGKRLNSPSQSSTYHELFTVTTENKDGQWVVTKYDAMY
Ga0311371_1146389213300029951PalsaPLLSWELAEWESAPPLTILQYRGNRLNQAGQPGTYKELLTITTENKDGQWVVTKYDSMY
Ga0311338_1056857613300030007PalsaLLSKWEHDYRKKYAHFICDSEAKHPLLSWELAEWESKPPLTILHYRGKRLTDPGQPATYKEIFTVTTENKDGQWVVTKYDSMY
Ga0311357_1126906013300030524PalsaLLSWELAEWETAPPLIILQYRGKRLNQAGQPGTYKEVLTITTENKDGQWVVTKYDSMY
Ga0311356_1103998213300030617PalsaSGWEHDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILQYRGNRLNQAGQPGTYKELLTITTENKDGQWVVTKYDSMY
Ga0265770_107026223300030878SoilELLSGWEHDYHKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTSPGQSATYRELFTVTEENKDGQWLVSKYDAMY
Ga0302180_1015870423300031028PalsaKKYAHFICNSEAQHPLLSWELAEWESAPPLTILQYRGKRLNQAGQPGTYQELLTVTTENKDGQWVVTKYDSMY
Ga0302180_1051414213300031028PalsaDWERDYRRKYAHFICNSEAQHPLLSWEIAEWESSPPLTILHYRGKRLNHVGQPGTYKELFTVTTENKDGQWVVTKYDAMY
Ga0170834_10797362413300031057Forest SoilWEHDYRKKYAHFICDSEKQHPLISWELAEWESAPPLTILHYRGKRQYGGGQPGYYQELFTVTTEKKAGEWVVTKYDAMY
Ga0302307_1030975623300031233PalsaYAHFICTSEAQHPLLSWELAEWESAPPLTILHYRGKRLNSPNQPGTYKELFTVTAENKDGQWVVTKYDAMY
Ga0302325_1026589813300031234PalsaSGWEHDYRKKYAHFICNSEAQHPLLSWELAEWESAPPLTILQYRGKRLNQAGQPGTYQELLTVTTENKDGQWVVTKYDSMY
Ga0302320_1072577813300031524BogCDSEAKHPLLSWELAEWESARPLTILHYRGKRLNGPGQTDTYKELLTVTTENKDGQWVVTKYDPND
Ga0310686_10158567643300031708SoilEKQHPLVSWEIAEWESAPPLTIIHYRGKRLYGSSQPGTYQDVFTVTTENEDGQWVVTKYDAMY
Ga0310686_10559204133300031708SoilYRKKYAHFICDSEAQHPLLSWELAEWESAPPLTILHYRGKRSNGSGQAGTYQELVTVTTENKDGQWVVTKYEAMY
Ga0307474_1131499423300031718Hardwood Forest SoilCDDLLSAWEHDYHKKYAHFICDSEAKHPLLSWELAEWESTPPLTILHYRGKRRYGAGQPGTYQELFTVTTEKKEGQWVVTKYDAMY
Ga0307478_1017446533300031823Hardwood Forest SoilHPLLSWELVEWEPAPPLVILHYRGKRSNGPSPSGTYKELFTVTTENKGGEWVVTKYDAMY
Ga0311301_1213529413300032160Peatlands SoilAQHPLLSWELAEWESAPPLTILHYRGKRLTGPGQSATYKELFTVTTENKDGQWVVTKYDAMY
Ga0335080_1117481523300032828SoilAHFICNSEAQHPLLSWELVDWESAPPLTILHYRGKRRNGNGQAGTYKELFTVTTENKSGQWVVTKYDAMY
Ga0370483_0107357_719_9223300034124Untreated Peat SoilICDSEAKHPLLSWELAEWESKPPLTILHYRGKRLTDPGQPATYKEIFTVTTENKDGQWVVTKYDSMY
Ga0370515_0151585_2_2293300034163Untreated Peat SoilYRKKYAHFICDSEAQHPLLSWELAEWETAPPLTILHYRGKREYGGGKSGTYTELFTVTTENKDGQWVVTKYDAMY
Ga0370515_0163092_2_2713300034163Untreated Peat SoilDGHCDELLSGWEHDYHKKYAHFICNSEAQHPLLSWELAEWESAPPLTILHYRGKRLTSPGQSTTYRELLTVTEENKDGQWLVSKYDAIY

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.