Metagenome / Metatranscriptome Family F065965

Overview

Basic Information

• Family ID: F065965
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 127
• Average Sequence Length: 41 residues
• Representative Sequence: MSQNVYLRITAEGRLFGLNSGDWTMLVGGFALVALVVLLL
• Number of Associated Samples: 99
• Number of Associated Scaffolds: 127

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 62.20 %
• % of genes near scaffold ends (potentially truncated): 33.86 %
• % of genes from short scaffolds (< 2000 bps): 81.89 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (55.118 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.685 % of family members)
• Environment Ontology (ENVO): Unclassified (43.307 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (62.205 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 42.65%
  β-sheet: 2.94%
  Coil/Unstructured: 54.41%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF00425	Chorismate_bind	13.39
PF04715	Anth_synt_I_N	4.72
PF03466	LysR_substrate	3.94
PF01321	Creatinase_N	2.36
PF00496	SBP_bac_5	1.57
PF13624	SurA_N_3	1.57
PF04892	VanZ	0.79
PF08874	DUF1835	0.79
PF04355	SmpA_OmlA	0.79
PF01757	Acyl_transf_3	0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG0147	Anthranilate/para-aminobenzoate synthases component I	Amino acid transport and metabolism [E]	9.45
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	2.36
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.57
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.57
COG0851	Septum formation topological specificity factor MinE	Cell cycle control, cell division, chromosome partitioning [D]	0.79
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.79
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79
COG5267	Uncharacterized conserved protein, DUF1800 family	Function unknown [S]	0.79

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	44.88 %
Unclassified	root	N/A	55.12 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	44.88 %
Unclassified	root	N/A	55.12 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.88 %
Unclassified	root	N/A	55.12 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.36 %
Unclassified	root	N/A	55.12 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.43 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.79 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.79 %
Unclassified	root	N/A	55.12 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.79 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.36 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.60 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.79 %
Unclassified	root	N/A	55.12 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.24 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.24 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.57 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.57 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.79 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.79 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.36 %
Unclassified	root	N/A	55.12 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.79 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.24 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.79 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.79 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.57 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.79 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.36 %
Unclassified	root	N/A	55.12 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.24 %
Bradyrhizobium symbiodeficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium symbiodeficiens	0.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.79 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.79 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.36 %
Unclassified	root	N/A	55.12 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.79 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.79 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.24 %
Bradyrhizobium symbiodeficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium symbiodeficiens	0.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.79 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.79 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.79 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.79 %
Streptomyces violaceusniger group	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group	2.36 %
Unclassified	root	N/A	55.12 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.79 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.24 %
Bradyrhizobium symbiodeficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium symbiodeficiens	0.79 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.79 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.79 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.79 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.79 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.79 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.79 %
Streptomyces malaysiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces violaceusniger group → Streptomyces malaysiensis	2.36 %
Unclassified	root	N/A	55.12 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002914|JGI25617J43924_10145708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818
3300004633|Ga0066395_10000007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57657
3300004633|Ga0066395_10082817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1507
3300005332|Ga0066388_100369789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2080
3300005332|Ga0066388_101536666	Not Available	1167
3300005332|Ga0066388_103410659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	812
3300005332|Ga0066388_104264790	Not Available	729
3300005332|Ga0066388_104325910	Not Available	724
3300005531|Ga0070738_10001038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65333
3300005533|Ga0070734_10004752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12630

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.21%
Host-Associated	Host-Associated	0.79%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.66%
Arthropoda	Host-Associated → Arthropoda	0.79%
Terrestrial	Environmental → Terrestrial	90.55%

Category

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	0.79%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.79%
Freshwater	Environmental → Aquatic → Freshwater	3.15%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.57%
Sediment	Environmental → Aquatic → Sediment	5.51%
Soil	Environmental → Terrestrial → Soil	88.19%

Type

Habitat	Taxonomy	Distribution
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.79%
Loam	Environmental → Terrestrial → Soil → Loam	14.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.51%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.57%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.15%

Subtype

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.36%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.15%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.79%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.79%

Habitat

Habitat	Taxonomy	Distribution
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.36%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.57%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.15%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.66%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.51%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_101457082	3300002914	Grasslands Soil	MSRNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVILLI*
Ga0066395_1000000737	3300004633	Tropical Forest Soil	MSQNVYLRITADGRFFGLNSGDWTVLVGGFVLVALMILLL*
Ga0066395_100828173	3300004633	Tropical Forest Soil	MSPNMHLRITADGRLFGLNSGDWTVLLGGFALVALVILLL*
Ga0066388_1003697893	3300005332	Tropical Forest Soil	MSSNVYLRITSEGRLFGLNSGDWMMLLGGFALVALVVLLL*
Ga0066388_1015366661	3300005332	Tropical Forest Soil	MSQNVGLRITAERRLFGLDSGDWTMLVGGFALVALVILVLS*
Ga0066388_1034106591	3300005332	Tropical Forest Soil	NMSRNVGLRITAEGRLFGLNSGDWMMLLGGFALAAAAVLLL*
Ga0066388_1042647901	3300005332	Tropical Forest Soil	MSPNVYLRIAAERRLFGLTSGDWTLLVGGYALIALMVLLL*
Ga0066388_1043259102	3300005332	Tropical Forest Soil	MSRNVGLRITADGRLFGLNSGDWTVLVGGFALVTLVILLL*
Ga0070738_1000103849	3300005531	Surface Soil	MSPNVDLRVMAEGRLLGLNSGDWLMLAGGFALVALLIFLL*
Ga0070734_100047525	3300005533	Surface Soil	MSQNVYLRIAAEGRLFGLSPGDWTILVGGFALVALLVLLL*
Ga0066905_1001385172	3300005713	Tropical Forest Soil	MSQNIGFRITPEGRLLGLNSGDWMLLVGGFAAVALVVLLI*
Ga0066903_1001278604	3300005764	Tropical Forest Soil	MSPNVYLRITSEGRLFGLNSGDWMVLLGGFALVALVVLLL*
Ga0066903_1012921453	3300005764	Tropical Forest Soil	VSNGLDQGTHMSRNVGLRITAEGRLFGLNSGDWMMLASGFALVAAIVLLL*
Ga0075024_1000566932	3300006047	Watersheds	MLQNVYGSMTAEGRLFGLNSGDWTMLLGGFALVALVALLL*
Ga0075024_1001043143	3300006047	Watersheds	MSVRFDQGTLMSQNVYLRITAEGRLFGLNSGDWTLLFGGFALVALLVMLL*
Ga0075029_1008488851	3300006052	Watersheds	SQNVYLRITAEGRLFGLSPGDWTILIGGFALVALVVLLL*
Ga0075026_1002398362	3300006057	Watersheds	VATPMSVRFDQGTLMSQNVYLRITAERRLFGLNSGDWTLLFGGFALVALLVMLL*
Ga0075019_101853311	3300006086	Watersheds	MSQNVYLRITAEGRLFGLSPGDWTILIGGFALVALVVLLL*
Ga0070765_1010892013	3300006176	Soil	MYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLAVLVVLLL*
Ga0099791_103072252	3300007255	Vadose Zone Soil	MVLDQGTHMSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVVLLI*
Ga0099793_102450252	3300007258	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVVLLI*
Ga0099793_104608711	3300007258	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWTMLVGGFALVALVVLLV*
Ga0099829_106212682	3300009038	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVILLL*
Ga0099830_101050812	3300009088	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWTMLVGGFALVALVILLV*
Ga0099828_110944952	3300009089	Vadose Zone Soil	MSQNAGLRITAEGRLFGLDSGDWTMLFGGFALVALVVLLV*
Ga0099792_102644841	3300009143	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWMMLVGGFALVALVVLL
Ga0099792_103166521	3300009143	Vadose Zone Soil	QGTHMSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVVLLV*
Ga0116221_10932433	3300009523	Peatlands Soil	GRMTAEGRLLGLSPGDWSMLIGGFVLVALVVLLL*
Ga0116134_10686001	3300009764	Peatland	MSLNLYARMTAERRLYGLNPGDWTVLLGGVALVALVVFLL*
Ga0126374_101240973	3300009792	Tropical Forest Soil	MSQNVGLRITAEGRLFGLDSGDWTMLVGGFAFVALVILLI*
Ga0126374_108314631	3300009792	Tropical Forest Soil	MSHNVYLRITADGRFFGLNSGDWTVLVGGFVLLALVILLL*
Ga0126374_109163421	3300009792	Tropical Forest Soil	MSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVVLLV*
Ga0126380_100600611	3300010043	Tropical Forest Soil	IGFRITPEGRLLGLNSGDWMLLVGGFAAVALVVLLI*
Ga0126380_111419851	3300010043	Tropical Forest Soil	MSQNVYLRFAAEGRLFGLTSGDWTVLVGGFALVALMIFL
Ga0126384_110028921	3300010046	Tropical Forest Soil	MSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVILLI*
Ga0126384_123881292	3300010046	Tropical Forest Soil	MSQNVYLRTAAERRLFGLTCGDWTVLVGGFALITLVILLL*
Ga0126382_124105941	3300010047	Tropical Forest Soil	TMSRNAGLRIAAEGRLFGLNSGDWMMLAGGFALAAAVVLLL*
Ga0123356_137297951	3300010049	Termite Gut	MGRNGDLRITTEGRLLGLNSGDWLILVGGFALAALVVLLL*
Ga0126370_106641922	3300010358	Tropical Forest Soil	MSQNVHLRIVADGRFFGLTAGDWTVLVGGFGLVALVVLLL*
Ga0126376_116398422	3300010359	Tropical Forest Soil	MSQNVHLRIIVADGRFFGLTAGDWTVLVGGFGLVALVVLLL*
Ga0126378_100826472	3300010361	Tropical Forest Soil	MHLRITADGRLFGLNSGDWTVLLGGFALVALVILLL*
Ga0126378_102182053	3300010361	Tropical Forest Soil	MSRNVGLRITAEGRLFGLNSGDWMMLLGGFALAAAAVLLL*
Ga0126378_104960252	3300010361	Tropical Forest Soil	MSQNVYLRFAAEGRLFGLTSGDWTVLVGGFALVALMIFLL*
Ga0126377_126258771	3300010362	Tropical Forest Soil	MYLRTAVERRLFGLTSGDWTVLVGGFALITLVILLL*
Ga0126379_110127441	3300010366	Tropical Forest Soil	MSRNVGLRITAEGRLFGLNSGDWMMLVCGFALAAAAVL
Ga0126381_1031840721	3300010376	Tropical Forest Soil	MSRNVGLRITAEGRLFGLNSGDWMMLASGFALVAAIVLLL*
Ga0126383_116146501	3300010398	Tropical Forest Soil	MSQNVHLRIVADGRFFGLTAGDWTVLVGGFGLVTLMVLLL*
Ga0150983_108753861	3300011120	Forest Soil	MYQSVFGRMTAEGRLLGLNPGDWSMLIGGFVLVALVVLLL*
Ga0150983_127308521	3300011120	Forest Soil	GASMYQNVFGRITAEGRLLGLNPGDWSMLIGGFVLVALVVLLL*
Ga0150983_129854791	3300011120	Forest Soil	QNVFGRITAEGRLLGLNPGDWSMLIGGFVLVALVVLLL*
Ga0150983_133866421	3300011120	Forest Soil	QKGAVMYQSVFGRMTAEGRLLGLNPGDWSLLIGGFVLVALVVLLL*
Ga0150983_152414162	3300011120	Forest Soil	SQKGASMYQSVFGRMTAEGRLLGLNPGDWSLLIGGFVLVVLVVLLL*
Ga0137392_110801892	3300011269	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWMMLVGGFALVALV
Ga0137393_116884461	3300011271	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWMMLVGGFALVALVVLLV*
Ga0137388_104902772	3300012189	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVILLV*
Ga0137388_116961281	3300012189	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWTMLVGGFVFVALVVLLV*
Ga0137362_100304711	3300012205	Vadose Zone Soil	QNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVVLLI*
Ga0137377_100294533	3300012211	Vadose Zone Soil	MGLRITAEGRLFGLDSGDWTMLVGGFALVALVVLLV*
Ga0137360_102097932	3300012361	Vadose Zone Soil	SQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVVLLI*
Ga0137360_103638551	3300012361	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALV
Ga0137361_109213782	3300012362	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALIILLI*
Ga0137407_119728841	3300012930	Vadose Zone Soil	MYQSVFGRMTAEGRLLGLNPGDWSLLIGGFVLVALVALLL*
Ga0126369_100065241	3300012971	Tropical Forest Soil	LRITADGRLFGLNSGDWTVLLGGFALVALVILLL*
Ga0126369_104479483	3300012971	Tropical Forest Soil	MSQNIGFHITPEGRLLGLNSGDWMLLVGGFAVVALVVLLI*
Ga0181532_101656161	3300014164	Bog	MSLNLYARMTAERRLFGLNPGDWTVLLGGVALVALVVFLL*
Ga0182033_116445311	3300016319	Soil	MSFDQETLMSPNVHLRITAEGRLLGLNSGDWTLLLGGFALIALMLLLL
Ga0187814_103629131	3300017932	Freshwater Sediment	MLPNVDLRITAEGRLLGLNSGDWMLLVGGFALVALVIFLL
Ga0187778_111853771	3300017961	Tropical Peatland	MHMSPNVDLRITAEGRLLGLNSGDWMMLVGGFALVALVIFVL
Ga0187783_100949122	3300017970	Tropical Peatland	MSQNVGLRITAEGRLFGLDSGDWMVLIGGFALVALVVLVL
Ga0187783_106779961	3300017970	Tropical Peatland	MSPNVDLRITAEGRLLGLNSGDWMMLVGGFALVALVILLL
Ga0187781_109003231	3300017972	Tropical Peatland	MSQNVGLRITAEGRLFGLDSGDWMVLIGGFALVALVVLLL
Ga0181504_10410211	3300019258	Peatland	MSLNLYARMTAERRLFGLNPGDWTVLLGGVALVALVVFLL
Ga0179594_103796271	3300020170	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVVLLI
Ga0210399_102185373	3300020581	Soil	MSQNVYLRITADGRFFGLNTGDWTILVGGFGLAALVVLLL
Ga0179596_100135873	3300021086	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWTMLVGGFALVALVVLLV
Ga0179596_107015671	3300021086	Vadose Zone Soil	MSQNVYLRITADGRFFGLNSGDWMMLLGGFALIALVVLLL
Ga0210400_104110193	3300021170	Soil	RGTPMPQNVYLRITADGRFFGLNTGDWTILVGGFGLAALVVLLL
Ga0210408_102369962	3300021178	Soil	MSQNVYLRITAEGRLFGLNSGDWTMLVGGFALVALVILLL
Ga0210389_101757172	3300021404	Soil	MSRNGELPMAEGRLLGLNSGDWMIIVGGFALVALIVLLL
Ga0210394_109847912	3300021420	Soil	GALMDQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLVALVVLLL
Ga0187846_100277493	3300021476	Biofilm	MSQNVGLRLTADGRLLGLNSGDWMLLVGGFAVVALIVLLV
Ga0126371_109182822	3300021560	Tropical Forest Soil	MHLRITADGRLFGLNSGDWTVLLGGFALVALVILLL
Ga0126371_121142122	3300021560	Tropical Forest Soil	MSQNVYLRITADGRFFGLNSGDWTVLVGGFVLVALMILLL
Ga0242642_10823292	3300022504	Soil	SMYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLVVLVVLLL
Ga0222729_10483111	3300022507	Soil	SMYQNVFGRITAEGRLLGLNPGDWPMLIGGFVLVALVVLLL
Ga0242658_10424861	3300022530	Soil	KGALMYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLAVLVVLLL
Ga0242662_102506782	3300022533	Soil	LMYQNVFGRMTAEGRLLGLNPGDWSMLIGGMVLVVLVVLLL
Ga0222756_10126002	3300022709	Soil	ALMYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLAVLVVLLL
Ga0242674_10444051	3300022711	Soil	NVFGRMTAEGRLLGLNPGDWSMLIGGFVLAVLVVLLL
Ga0242678_10740091	3300022715	Soil	SMYQSVFGRMTAEGRLLGLNPGDWSMLIGGFVLVALVVLLL
Ga0242673_10564482	3300022716	Soil	GALMYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLAVLVVLLL
Ga0242657_12337141	3300022722	Soil	YQNVFGRITAEGRLLGLNPGDWSMLIGGFVLVALVVLLL
Ga0242665_103275842	3300022724	Soil	GTLMSQNVYLRITAEGRLFGLNSGDWTMLVGGFALVALVVLLL
Ga0242654_101734801	3300022726	Soil	RGTPMSQNVYLRITADGRFFGLNTGDWTILVGGFGLAALVVLLL
Ga0242654_102803931	3300022726	Soil	QGTHMSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVVLLV
Ga0209240_10293453	3300026304	Grasslands Soil	MSRNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVILLI
Ga0209131_11561601	3300026320	Grasslands Soil	GTHMSQNVGLRITAEGRFFGLDSGDWTMLVGGFALVALVVLLV
Ga0257149_10016873	3300026355	Soil	MSQNVGLRITAEGRFFGLDSGDWMMLVGGFALVALVVLLV
Ga0257160_10060053	3300026489	Soil	THMSQNVGLRITAEGRFFGLDSGDWMMLVGGFALVALVILLV
Ga0257159_10491861	3300026494	Soil	MSQNVYLRITAEGRLFGLNSGDWMMLVGGFALVALVVLLV
Ga0257164_10935522	3300026497	Soil	DGLDQGTHMSQNVGLRITAEGRFFGLDSGDWTMLVGGFALVALVVLLV
Ga0209625_10424382	3300027635	Forest Soil	MSQNVYLRITAEGRLFGLNSGDWTMLVGGFALVALVVLLL
Ga0209810_10039944	3300027773	Surface Soil	MSPNVDLRVMAEGRLLGLNSGDWLMLAGGFALVALLIFLL
Ga0209060_100079833	3300027826	Surface Soil	MSQNVYLRIAAEGRLFGLSPGDWTILVGGFALVALLVLLL
Ga0209701_102331391	3300027862	Vadose Zone Soil	MSQNVGLRITAEGRFFGLDSGDWTMLVGGFALVALVILLV
Ga0209465_1000035513	3300027874	Tropical Forest Soil	MSQNIGFHITPEGRLLGLNSGDWMLLVGGFAVVALVVLLI
Ga0209067_104218201	3300027898	Watersheds	MSQNVYLRITAEGRLFGLSPGDWTILIGGFALVALVVLLL
Ga0209488_100990912	3300027903	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVILLV
Ga0209488_101687802	3300027903	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVVLLV
Ga0209415_100458514	3300027905	Peatlands Soil	MYQNVFGRMTAEGRLLGLSPGDWSMLIGGFVLVALVVLLL
Ga0209069_100878312	3300027915	Watersheds	MSVRFDQGTLMSQNVYLRITAEGRLFGLNSGDWTLLFGGFALVALLVMLL
Ga0137415_100102954	3300028536	Vadose Zone Soil	MSQNVGLRITAEGRLFGLDSGDWMMLVGGFALVALVVLLV
Ga0222748_10194552	3300029701	Soil	PMYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLVVLVVLLL
Ga0307482_11203772	3300030730	Hardwood Forest Soil	GASMYQNVFGRITAEGRLLGLNPGDWSILIGGFVLVALVVLLL
Ga0170834_1041435152	3300031057	Forest Soil	MYQNAFGRMTAEGRLLGLSPGDWTVLIGGVVLVALIVLLL
Ga0318528_101618241	3300031561	Soil	NDGFEQGTHMSQNVGLRITAEGRLFGLDSGDWTMLVGGFALVALVILLI
Ga0318515_106516101	3300031572	Soil	MSPNVYLRITSEGRLFGLNSGDWMVLVSGFALVALVVLLL
Ga0307474_112750432	3300031718	Hardwood Forest Soil	MSRNGDLPIMAEGRLLGLNSGDWMMLVGGFALVALVVLLL
Ga0306917_103282111	3300031719	Soil	MSPNVYLRITSEGRLFGLNSGDWMMLLGGFALVALVVLLL
Ga0307469_100111184	3300031720	Hardwood Forest Soil	MPENMYLRTAVERRLFGLTSGDWTVLVGGFALITLVILLL
Ga0307468_1022642242	3300031740	Hardwood Forest Soil	LMPENMYLRTAAERRLFGLTSGDWTVLVGGFALITLVILLL
Ga0307478_118051241	3300031823	Hardwood Forest Soil	MYQNVFGRITAEGRLLGLNPGDWSILIGGFVLVALVVLLL
Ga0306925_112012542	3300031890	Soil	MSFDQETLMSPNVHLRITAEGRLLGLNSGDWTLLLGGFALIALMLLVL
Ga0318525_104753931	3300032089	Soil	MSQNVGLRITAEGRLFGLDSGDWIVLVGGFALVALVILLI
Ga0307472_1003304752	3300032205	Hardwood Forest Soil	MGFDRGTLMPENMYLRTAVERRLFGLTSGDWTVLVGGFALITLVILLL
Ga0348332_107940762	3300032515	Plant Litter	MSQNMFGRMAAEGRLFGLNPGDWSVLLGGFALVALVVLLI
Ga0348332_121080672	3300032515	Plant Litter	GALMYQNVFGRMTAEGRLLGLNPGDWSMLIGGFVLVALVVLLL