Metagenome / Metatranscriptome Family F065961

Basic Information
Family ID	F065961
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	40 residues
Representative Sequence	NAAEVRAAINGLFQQLENPSAYNADQFASALRRIRAMLR
Number of Associated Samples	111
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.64 %
% of genes from short scaffolds (< 2000 bps)	93.70 %
Associated GOLD sequencing projects	110
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Most Common Taxonomy
Group	Bacteria (93.701 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.197 % of family members)
Environment Ontology (ENVO)	Unclassified (29.134 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.181 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.75% β-sheet: 0.00% Coil/Unstructured: 49.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF08241	Methyltransf_11	44.09
PF04255	DUF433	9.45
PF13649	Methyltransf_25	9.45
PF00067	p450	6.30
PF00398	RrnaAD	3.94
PF00149	Metallophos	3.15
PF00571	CBS	2.36
PF01381	HTH_3	1.57
PF00487	FA_desaturase	0.79
PF01145	Band_7	0.79
PF03928	HbpS-like	0.79
PF04464	Glyphos_transf	0.79
PF01066	CDP-OH_P_transf	0.79
PF12698	ABC2_membrane_3	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	9.45
COG2124	Cytochrome P450	Defense mechanisms [V]	6.30
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	3.94
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.79
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.79
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.79
COG1887	CDP-glycerol glycerophosphotransferase, TagB/SpsB family	Cell wall/membrane/envelope biogenesis [M]	0.79
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.79
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.79

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.70 %
Unclassified	root	N/A	6.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.70 %
Unclassified	root	N/A	6.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.70 %
Unclassified	root	N/A	6.30 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	75.59 %
Unclassified	root	N/A	6.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.57 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.30 %
Unclassified	root	N/A	6.30 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Unclassified	root	N/A	6.30 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	5.51 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.79 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Unclassified	root	N/A	6.30 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	5.51 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.66 %
Unclassified	root	N/A	6.30 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	5.51 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.79 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002914\|JGI25617J43924_10340280	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300004156\|Ga0062589_100004790	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4836	Open in IMG/M
3300004479\|Ga0062595_102707698	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300004635\|Ga0062388_100986306	All Organisms → cellular organisms → Bacteria → Acidobacteria	817	Open in IMG/M
3300004635\|Ga0062388_101138100	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300004635\|Ga0062388_102169160	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300005166\|Ga0066674_10298368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300005332\|Ga0066388_101425828	All Organisms → cellular organisms → Bacteria → Acidobacteria	1205	Open in IMG/M
3300005434\|Ga0070709_11271117	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300005436\|Ga0070713_101075799	All Organisms → cellular organisms → Bacteria → Acidobacteria	777	Open in IMG/M
3300005467\|Ga0070706_102004851	Not Available	524	Open in IMG/M
3300005531\|Ga0070738_10444661	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300005548\|Ga0070665_100922905	All Organisms → cellular organisms → Bacteria → Acidobacteria	886	Open in IMG/M
3300005556\|Ga0066707_10888213	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300005610\|Ga0070763_10977205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	506	Open in IMG/M
3300006034\|Ga0066656_10408844	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300006052\|Ga0075029_101011093	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300006102\|Ga0075015_100392420	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300006176\|Ga0070765_101311125	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300006796\|Ga0066665_10416158	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300006806\|Ga0079220_10728644	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300006852\|Ga0075433_10753137	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300006854\|Ga0075425_100917881	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300006954\|Ga0079219_11830332	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300007255\|Ga0099791_10041638	All Organisms → cellular organisms → Bacteria → Acidobacteria	2040	Open in IMG/M
3300007788\|Ga0099795_10237097	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300009012\|Ga0066710_104390188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300009088\|Ga0099830_10503065	All Organisms → cellular organisms → Bacteria → Acidobacteria	989	Open in IMG/M
3300009143\|Ga0099792_10220791	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300010048\|Ga0126373_12554849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	569	Open in IMG/M
3300010358\|Ga0126370_11362807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300010361\|Ga0126378_13325857	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	511	Open in IMG/M
3300010398\|Ga0126383_10901054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300010860\|Ga0126351_1238188	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300011269\|Ga0137392_11198398	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300012096\|Ga0137389_11538778	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300012189\|Ga0137388_10545793	All Organisms → cellular organisms → Bacteria → Acidobacteria	1077	Open in IMG/M
3300012189\|Ga0137388_11516525	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300012189\|Ga0137388_11928350	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300012203\|Ga0137399_11237714	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300012205\|Ga0137362_10875857	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300012205\|Ga0137362_11184328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300012210\|Ga0137378_10749114	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300012211\|Ga0137377_11632611	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300012361\|Ga0137360_10824490	All Organisms → cellular organisms → Bacteria → Acidobacteria	799	Open in IMG/M
3300012362\|Ga0137361_10339992	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300012362\|Ga0137361_11560295	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300012363\|Ga0137390_11299179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300012582\|Ga0137358_10484932	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300012685\|Ga0137397_10333069	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300012918\|Ga0137396_10187005	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300012922\|Ga0137394_11480333	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300012924\|Ga0137413_10586097	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300012929\|Ga0137404_10701794	All Organisms → cellular organisms → Bacteria → Acidobacteria	915	Open in IMG/M
3300012929\|Ga0137404_11272750	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300012929\|Ga0137404_11841067	Not Available	563	Open in IMG/M
3300012929\|Ga0137404_11952828	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300012930\|Ga0137407_11783976	All Organisms → cellular organisms → Bacteria → Acidobacteria	587	Open in IMG/M
3300012961\|Ga0164302_11121860	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300012971\|Ga0126369_12891991	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300012977\|Ga0134087_10030612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2032	Open in IMG/M
3300014654\|Ga0181525_10732218	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300014969\|Ga0157376_10000008	All Organisms → cellular organisms → Bacteria → Acidobacteria	351192	Open in IMG/M
3300015054\|Ga0137420_1304600	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300015372\|Ga0132256_103517309	Not Available	527	Open in IMG/M
3300016294\|Ga0182041_11621084	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300016404\|Ga0182037_11699473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300017656\|Ga0134112_10065012	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300017823\|Ga0187818_10188250	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300017932\|Ga0187814_10121343	All Organisms → cellular organisms → Bacteria → Acidobacteria	969	Open in IMG/M
3300017955\|Ga0187817_10420145	All Organisms → cellular organisms → Bacteria → Acidobacteria	853	Open in IMG/M
3300017973\|Ga0187780_11402257	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	515	Open in IMG/M
3300018006\|Ga0187804_10143393	Not Available	1003	Open in IMG/M
3300018006\|Ga0187804_10582060	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	508	Open in IMG/M
3300018047\|Ga0187859_10155297	All Organisms → cellular organisms → Bacteria → Acidobacteria	1214	Open in IMG/M
3300018060\|Ga0187765_10314892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	942	Open in IMG/M
3300018088\|Ga0187771_11885291	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300018468\|Ga0066662_12796672	Not Available	517	Open in IMG/M
3300020579\|Ga0210407_10387010	All Organisms → cellular organisms → Bacteria → Acidobacteria	1094	Open in IMG/M
3300020580\|Ga0210403_10523275	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300020581\|Ga0210399_10734114	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300020581\|Ga0210399_10832240	All Organisms → cellular organisms → Bacteria → Acidobacteria	752	Open in IMG/M
3300021086\|Ga0179596_10696173	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300021088\|Ga0210404_10298138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	886	Open in IMG/M
3300021168\|Ga0210406_10432434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1050	Open in IMG/M
3300021168\|Ga0210406_10957920	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300021178\|Ga0210408_10436865	All Organisms → cellular organisms → Bacteria → Acidobacteria	1042	Open in IMG/M
3300021181\|Ga0210388_10253610	All Organisms → cellular organisms → Bacteria → Acidobacteria	1544	Open in IMG/M
3300021403\|Ga0210397_10182285	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300021433\|Ga0210391_10387368	All Organisms → cellular organisms → Bacteria → Acidobacteria	1097	Open in IMG/M
3300021433\|Ga0210391_10435552	All Organisms → cellular organisms → Bacteria → Acidobacteria	1029	Open in IMG/M
3300021477\|Ga0210398_10429112	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1077	Open in IMG/M
3300021479\|Ga0210410_10858407	All Organisms → cellular organisms → Bacteria → Acidobacteria	794	Open in IMG/M
3300021560\|Ga0126371_10149839	All Organisms → cellular organisms → Bacteria → Acidobacteria	2393	Open in IMG/M
3300021560\|Ga0126371_10360773	All Organisms → cellular organisms → Bacteria → Acidobacteria	1590	Open in IMG/M
3300024179\|Ga0247695_1010093	All Organisms → cellular organisms → Bacteria → Acidobacteria	1329	Open in IMG/M
3300024290\|Ga0247667_1049993	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300024310\|Ga0247681_1070390	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300025928\|Ga0207700_10908800	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300026217\|Ga0209871_1125198	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300026314\|Ga0209268_1190394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	508	Open in IMG/M
3300026319\|Ga0209647_1189044	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300026374\|Ga0257146_1038954	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300026537\|Ga0209157_1359533	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300027266\|Ga0209215_1055604	Not Available	550	Open in IMG/M
3300027645\|Ga0209117_1045160	All Organisms → cellular organisms → Bacteria → Acidobacteria	1323	Open in IMG/M
3300027671\|Ga0209588_1021471	All Organisms → cellular organisms → Bacteria	2029	Open in IMG/M
3300027671\|Ga0209588_1095645	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300027857\|Ga0209166_10156730	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300027884\|Ga0209275_10121203	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300028138\|Ga0247684_1042422	All Organisms → cellular organisms → Bacteria → Acidobacteria	731	Open in IMG/M
3300028381\|Ga0268264_11382493	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300031231\|Ga0170824_109745044	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300031231\|Ga0170824_110606804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1698	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1091404	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300031549\|Ga0318571_10079457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300031754\|Ga0307475_10496162	All Organisms → cellular organisms → Bacteria → Acidobacteria	980	Open in IMG/M
3300031820\|Ga0307473_11034572	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300031823\|Ga0307478_11062677	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300031910\|Ga0306923_10771235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1064	Open in IMG/M
3300032059\|Ga0318533_11447973	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300032160\|Ga0311301_12280350	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300032174\|Ga0307470_10212579	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300032180\|Ga0307471_102491667	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300032205\|Ga0307472_102410904	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.28%
Host-Associated	Host-Associated	4.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.83%
Aquatic	Environmental → Aquatic	9.45%
Plants	Host-Associated → Plants	4.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.83%
Freshwater	Environmental → Aquatic → Freshwater	7.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.94%
Sediment	Environmental → Aquatic → Sediment	1.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.87%
Loam	Environmental → Terrestrial → Soil → Loam	7.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.57%
Sand	Environmental → Terrestrial → Soil → Sand	0.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.20%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.15%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.57%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.79%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.36%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.57%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.79%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.79%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300024310	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028138	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_103402802	3300002914	Grasslands Soil	PANAAEVRDAINGLFQQLENPSSYNADQFASSLRRIRTLLH*
Ga0062589_1000047901	3300004156	Soil	GNPANAAEVRAAINGLFQQMENPSAYDADRFAAALRRIGDLLH*
Ga0062595_1027076982	3300004479	Soil	PSNAAEVRNNINGLFQQLENPSAYNADRFRAALKRIGELLR*
Ga0062388_1009863061	3300004635	Bog Forest Soil	KPANAPEVRAAINGLFQQLENPSSYNADQFASALRRMRPFFN*
Ga0062388_1011381002	3300004635	Bog Forest Soil	NAAEVRSSINGLFQQLENQSAYNADLFAESLRRIRPQLQ*
Ga0062388_1021691602	3300004635	Bog Forest Soil	NDAEIRATINALFQQLENPSAYNADQFAASLRRLRSLFP*
Ga0066674_102983683	3300005166	Soil	NAAEVRTAINGLFQQLENPSAYNADQFASALRRIRPLLQ*
Ga0066388_1014258283	3300005332	Tropical Forest Soil	AKPANDAEVRAAINGLFQQLENPSAYNADHFASALRRLRPLLR*
Ga0070709_112711171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	NATGVRDAINGLFQQMENPSAYNADRFASALKRIGDLIR*
Ga0070713_1010757991	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KPANAAEVRAAINGLFQQLELPSSYNADQFAIALRKIHELLR*
Ga0070706_1020048512	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DAMPSNAAEVRAAINGLFQQLENPSAYNANQFAAALRKIRSML*
Ga0070738_104446611	3300005531	Surface Soil	VRAAINGLFQQLQNPSSYNADQFASALRKLRSLLQ*
Ga0070665_1009229051	3300005548	Switchgrass Rhizosphere	RAAINGLFQQMENPSAYNADRFAAALKRIGDLLH*
Ga0066707_108882132	3300005556	Soil	EVRDAINGLFQQLENPSGYNADQFASSLRRIRALLH*
Ga0070763_109772052	3300005610	Soil	DAAEVRAAINALFQQLENPSAYNADQFASALRRIRPLLH*
Ga0066656_104088442	3300006034	Soil	EVRAAINQLFQQLENPSAYNADEFAFSLRRIHTLLH*
Ga0075029_1010110932	3300006052	Watersheds	SKDSKPSDAAETRAAINALFQQLENPSAYNADQFASALRRIRPLLH*
Ga0075015_1003924201	3300006102	Watersheds	NAAEVRAAINALFQQLENPSSYNADQFASALRRIRPML*
Ga0070765_1013111252	3300006176	Soil	NANEVRAAINELFQQLENPSAYNADQFASSLRKIRVLLR*
Ga0066665_104161581	3300006796	Soil	NATEVRAAINGLFQQLEMPSNYNADQFAIALRRIHELLR*
Ga0079220_107286443	3300006806	Agricultural Soil	EVKPANAAEVRAAINGLFQQLENPSAYNANQFGAALHKIRSLLQ*
Ga0075433_107531372	3300006852	Populus Rhizosphere	AEVRAAINGLFQQLENPSAYNADRFAGALKRIGELLR*
Ga0075425_1009178813	3300006854	Populus Rhizosphere	VKPANAAEVRAAINGLFQQLENPSAYNANQFGAAHHKIRSLLQ*
Ga0079219_118303322	3300006954	Agricultural Soil	RAAINELFQLLHNPSAYDADKFAAALRRLRAQLR*
Ga0099791_100416382	3300007255	Vadose Zone Soil	DAKPANAAEVRAAINGLFQQLENPSAYNADQFASALRRIRTMLR*
Ga0099795_102370971	3300007788	Vadose Zone Soil	PEVRPAINGLFQQLENPSSYNADQFASALRRIRTLLQ*
Ga0066710_1043901883	3300009012	Grasslands Soil	ANTAEVRTAINGLFQQLENPSAYNADQFASALRRIRPLLQ
Ga0099830_105030651	3300009088	Vadose Zone Soil	PANAPEVRAAINALFQQLENPSAYNADQFASSLRRIRTLLQ*
Ga0099792_102207911	3300009143	Vadose Zone Soil	DVRAAINGIFQQLENPSAYNADQFASALRKVGALIH*
Ga0126373_125548492	3300010048	Tropical Forest Soil	AEIRAAINVLFQQLEYPSAYNADQFASALRRIRPMLH*
Ga0126370_113628072	3300010358	Tropical Forest Soil	VRAAINGLFQQLENPSVYNADQFVSALRRIRPMLQ*
Ga0126378_133258572	3300010361	Tropical Forest Soil	PNDAEIRGAINQLFQQLENPSAYNADQFAAALRRIRPMLH*
Ga0126377_132755172	3300010362	Tropical Forest Soil	PNQEVKQAINALFQQLENPSAYNGRKFAAQLKRIGAVIQ*
Ga0126383_109010541	3300010398	Tropical Forest Soil	SRETKPANAAEVRTAINGLFQQLENPSAYNADQFASALRRIRALLQ*
Ga0126351_12381881	3300010860	Boreal Forest Soil	KPSNAAEVRAAINALFQQLENPSAYNADAFAAALRRLQPMLR*
Ga0126344_13899563	3300010866	Boreal Forest Soil	RAAINALFQQLENPSAYNADAFAAALRRLQPMLR*
Ga0137392_111983982	3300011269	Vadose Zone Soil	NAAEVRAAINGLFQRLENPSSYNADQFASALRRIRTVLQ*
Ga0137389_115387782	3300012096	Vadose Zone Soil	PSNAPEVRAAINRLFQQLENPSAYNEDQFASALKRIRDLLH*
Ga0137388_105457931	3300012189	Vadose Zone Soil	EVRAAINGLFQQLENPSAYNADQFASALRRIRTMVR*
Ga0137388_115165252	3300012189	Vadose Zone Soil	NVAEVRAAINALFQQLENPSSYNADQFASSLRGIRTLLH*
Ga0137388_119283502	3300012189	Vadose Zone Soil	RVAINELFQQLENPSAYNADQFASSLRRIRTLLH*
Ga0137399_112377141	3300012203	Vadose Zone Soil	NAAEVRAAINGLFQQLENPSAYNADQFASALRRIRAMLR*
Ga0137362_108758571	3300012205	Vadose Zone Soil	KPANAAEVRAAINELFQQLENPSAYNADQFASSLRRIHTLLH*
Ga0137362_111843281	3300012205	Vadose Zone Soil	NDAEVRGAINILFQQLENPSAYNADQFAAALRRIRPMLH*
Ga0137378_107491143	3300012210	Vadose Zone Soil	VEVRAAINGLFQQLENPSSYNADQFASALRRLRPLLQ*
Ga0137377_116326112	3300012211	Vadose Zone Soil	DVKPGNAADVRAAINGLFQQLEYPSAYNADQFASSLHRIGEMLR*
Ga0137360_108244902	3300012361	Vadose Zone Soil	ANPSNAAEVRAAINGLFQQLENPSAYNADQFASFLKRIKDLLH*
Ga0137361_103399921	3300012362	Vadose Zone Soil	KDAKPANAAEVRPAINGLFQQLENPSSYNADQFASALRRIRVMLQ*
Ga0137361_115602951	3300012362	Vadose Zone Soil	KDAKPANAAEVRPAINGLFQQLENPSSYNADQFASALRRIRTLLQ*
Ga0137390_112991791	3300012363	Vadose Zone Soil	RETKPANAAEVRAAINALFQQLENPSSYNADQFASSLRRIRTMLQ*
Ga0137358_104849322	3300012582	Vadose Zone Soil	KEAKPANATEVRAAINGLFQQLEMPSNYNADQFAIALRRIHELLR*
Ga0137397_103330694	3300012685	Vadose Zone Soil	ANAAEVRAAINGLFQQLENPSAYNADQFASALHRVRTMLR*
Ga0137396_101870053	3300012918	Vadose Zone Soil	VRAAINALFQQLENPSAYNADQFASALRRIRTLLQ*
Ga0137394_114803332	3300012922	Vadose Zone Soil	EVRAAINGLFQQLEVPSTYDADQFSASLRRIHDLLR*
Ga0137413_105860971	3300012924	Vadose Zone Soil	QANPPNAPEVRSAINGLFQQLENPSAYKADQFAAALKRIHDLLH*
Ga0137404_107017942	3300012929	Vadose Zone Soil	AEVRAAINGLFQQLENPSAYNADQFASALKRIHDLLH*
Ga0137404_112727501	3300012929	Vadose Zone Soil	KDTKPGNDAEIRGAINVLFQQVENPSSYNADQFAAALRRIRPMLR*
Ga0137404_118410673	3300012929	Vadose Zone Soil	AKPGNAAEVRAAINGLFQQLENPSAYNANQFTAALRKIRGMLQ*
Ga0137404_119528281	3300012929	Vadose Zone Soil	SKRANPSNAPEVRVAINGLFQQLEDPSVYNADQFAAALRRIHDLLH*
Ga0137407_117839761	3300012930	Vadose Zone Soil	EVRAAINGLFQQLENPSAYNADQFASALHRIRTMLR*
Ga0164302_111218601	3300012961	Soil	ARAAINGLFQQLENPSAYNANQFAAALRKIRGLLQ*
Ga0126369_128919911	3300012971	Tropical Forest Soil	NATEVRAAINSLFQQLEIPSSYNADQFAGSLRKIHELLR*
Ga0134087_100306121	3300012977	Grasslands Soil	AEVRAAINGLFKQLENPSAYNADQFASALRRIRSLL*
Ga0181525_107322182	3300014654	Bog	KEAQPANAAEMRSAINGLFQQLENPSAYNADVFAGALRHMRPMLQ*
Ga0157376_10000008133	3300014969	Miscanthus Rhizosphere	VRNAINGLFQQLENPSAYNADRFALALKRIGELLR*
Ga0137420_13046001	3300015054	Vadose Zone Soil	LRTPREVRAAINALFQQLENPSSYNADQFASALRRIRTLLQ*
Ga0132256_1035173092	3300015372	Arabidopsis Rhizosphere	AEVRTAINGLFQQLENPSAYNANQFAAALRKIRALLQ*
Ga0182041_116210842	3300016294	Soil	EVRAAINLLFQQLENPSAYNADQFAAGLRRIRPLLH
Ga0182037_116994732	3300016404	Soil	EVRAAINTLFQQLENSSAYNADQFASALRRIRPMLQ
Ga0134112_100650123	3300017656	Grasslands Soil	ANASEVRAAINALFQQLENPSAYNADQFASALRRIRTLLQ
Ga0187818_101882503	3300017823	Freshwater Sediment	AEVRAAINGLFQQLENPSSYNADQFASALRRIRPMLN
Ga0187814_101213431	3300017932	Freshwater Sediment	AEIRAAINGLFQQLENPSAYSADQFASALRRIRPLLQQK
Ga0187817_104201452	3300017955	Freshwater Sediment	VRAAINGLFQQLENPSSYNADQFASALRRIRPMLQ
Ga0187780_114022571	3300017973	Tropical Peatland	PANDAEVRAAINQLFQQLENPSAYNADQFAAALRRIRPMLH
Ga0187804_101433933	3300018006	Freshwater Sediment	AAEVRAAINGLFQQLENPSSYNADQFASALRRIRTMIQ
Ga0187804_105820601	3300018006	Freshwater Sediment	IRAAINGLFQQLENPSAYSADQFASALRRIRPLLQQK
Ga0187859_101552973	3300018047	Peatland	PADAAEVRAAINALFQQLENPSAYNADQFAAALRRIRPLLH
Ga0187765_103148921	3300018060	Tropical Peatland	EVRGAINGLFQQLENPSAYNADQFAAALRRIRPMLR
Ga0187771_118852911	3300018088	Tropical Peatland	NDAEIRGAINTLFQQLENPSAYNADQFAAALRRLRPLLP
Ga0066662_127966723	3300018468	Grasslands Soil	AEVRSAINLLFQQLENPSSYNANQFAGSLRRIHGILQ
Ga0210407_103870103	3300020579	Soil	KPSNADEVRAAINELFRQLENPSAYNADQFASSLRRIGPTLR
Ga0210403_105232753	3300020580	Soil	AKPANAADVRAAINALFQQLENPSSYNADQFASALRRIRTLLQ
Ga0210399_107341142	3300020581	Soil	KNAEEVRSAINGLFHQLENPSSYNADQFAAALRRLHGML
Ga0210399_108322402	3300020581	Soil	EVRAAINALFQQLENPSAYNADQFASALRRLRPLLQ
Ga0179596_106961732	3300021086	Vadose Zone Soil	EVRPAINGLFQQLENPSSYNADQFASALRRIRTLLQ
Ga0210404_102981382	3300021088	Soil	NDAEVRGAINVLFQQLENPSSYNADQFAAALRRIRPMLH
Ga0210406_104324342	3300021168	Soil	AEVRGAINALFQQLENPSSYNADQFAAALRRIRPMLR
Ga0210406_109579201	3300021168	Soil	KQAKPANSAEVRAAINALFQQLENPSAYNADQFASALRRLRPLLP
Ga0210408_104368653	3300021178	Soil	DAKPGNAAEVRGAINGLFQQVENPSSYNADQFASALRRIRVLLQ
Ga0210388_102536103	3300021181	Soil	FSKNSKPANDVEIRSAINALFQQLENPSIYNADQFAASLHRLRPLLN
Ga0210397_101822851	3300021403	Soil	PEVRAAINALFQQLENPSAYNADQFASSLRRIRTLLN
Ga0210391_103873681	3300021433	Soil	AKPGNADEVRAAINELFRQLENPSAYNADQFSVSLRRIRPMLQ
Ga0210391_104355521	3300021433	Soil	AEEVRAAINELFRQLENPSAYNADQFAASLRRIRPMLR
Ga0210398_104291121	3300021477	Soil	EIRSAINALFQQLENPSIYNADQFAASLHRLRPLLN
Ga0210410_108584072	3300021479	Soil	KPANAAEVRAAINGLFQQLENPSAYNADQFASALRKIRPLLN
Ga0126371_101498391	3300021560	Tropical Forest Soil	AEIRAPIKQLFQQLENPSAYNAGQFAAALRRIRPMLH
Ga0126371_103607731	3300021560	Tropical Forest Soil	EAEIRAAINALFQQLENPSAYNADQFAAALRRLRSLLP
Ga0247695_10100932	3300024179	Soil	AKDTKPANDAEVRGAINALFQQLENPSSYNADQFASALRRIRPMLH
Ga0247667_10499931	3300024290	Soil	NAAEVRAAINGLFQQLELPSSYNADQFAAALRRIHELLR
Ga0247681_10703902	3300024310	Soil	EVRNAINGLFQQLENPSAYHADRFATALKRIGDLF
Ga0207700_109088001	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	CKEAKPANAAEVRAAINGLFQQLELPSSYNADQFAIALRKIHELLR
Ga0209871_11251981	3300026217	Permafrost Soil	KEAKPKNADELHAAINGLFQQLENPSSYNADQFAAALRRIHGML
Ga0209268_11903942	3300026314	Soil	AEVRAAINELFQQLENPSAYNADEFASLLRRIHTLLH
Ga0209647_11890441	3300026319	Grasslands Soil	KPANATGVRAAINGLFQQLELPSNYNADQFATALRKIHELLR
Ga0257146_10389542	3300026374	Soil	NPQNAPEVRAAINGLFQQLESPSAYNADQFASALKRIHDLLH
Ga0209157_13595331	3300026537	Soil	SKQGSPGNANEVRAAINALFQQLENPSVYNADQFASALKRIRDLLH
Ga0209215_10556042	3300027266	Forest Soil	YSRETKPANAAEVRAAINGLFQQLENPSAYNADQFASALRRIRPMLQ
Ga0209117_10451603	3300027645	Forest Soil	DAKPANAAEVRAAINGLFQQLENPSAYNADQFAVALRKIRPMLQ
Ga0209588_10214713	3300027671	Vadose Zone Soil	SRDAKPANAAEVRAAINGLFQQLENPSAYNADQFASALRRIRTMVR
Ga0209588_10956451	3300027671	Vadose Zone Soil	PANAPDVRAAINALFQQLENPSAYNADQFASALRRIRTLLQ
Ga0209166_101567303	3300027857	Surface Soil	APEVRAAINGLFQQLENPSAYNADQFASALRRIHDLLH
Ga0209275_101212033	3300027884	Soil	DEVRAGINELFRQLENPSAYNADHFAASLQRIGPMLR
Ga0247684_10424221	3300028138	Soil	ANAAEVRAAINGLFQQLENPSAYNADRFAAALRRIRPMLQ
Ga0268264_113824931	3300028381	Switchgrass Rhizosphere	AEVRAAINGLFQQMENPSAYNADRFAAALKRIGDLLH
Ga0170824_1097450442	3300031231	Forest Soil	ATEVRSAINGLFQQLESPSAYHADQFASGMRRIHDLLH
Ga0170824_1106068041	3300031231	Forest Soil	VRGVINALFQQLENPSSYNADQFAVALRRIRPMLH
(restricted) Ga0255312_10914041	3300031248	Sandy Soil	EARAAINELFRQLENPSSYNADQFAAALRRIRQLLH
Ga0318571_100794573	3300031549	Soil	VRTAINGLFQQLENPSAYNANQFASALRRIRPLLQ
Ga0307475_104961621	3300031754	Hardwood Forest Soil	ADAAEVRAAINALFQQLENPSAYNADQFASALRRIRPLLH
Ga0307473_110345721	3300031820	Hardwood Forest Soil	QADPPNASQVRTAINGLFQQLENPSSYHADQFASSLKRIRDLLH
Ga0307478_110626771	3300031823	Hardwood Forest Soil	AEARSAINGLFQQLENPSAYNADEFAAALHRIRPLLP
Ga0306923_107712352	3300031910	Soil	AKEAKPPNDAEIRAVINVLFQQVENPSAYNADQFAAALRRIRPMLH
Ga0318533_114479732	3300032059	Soil	RKQGMPANDAEIRAGINRLFQQLENPSAYNADQFAAALGRLQELLR
Ga0311301_122803501	3300032160	Peatlands Soil	AKPSNAEEVRAAINELFRQLENPSSYNADQFAAALRRIRPMLR
Ga0307470_102125791	3300032174	Hardwood Forest Soil	KQANPTNAAEVREAINGLFQQMENPSAYNADRFASALKRIGDLIR
Ga0307471_1024916671	3300032180	Hardwood Forest Soil	NAAEVRAAINGLFQQLENPSAYNADQFATALRRIRTMLR
Ga0307472_1024109042	3300032205	Hardwood Forest Soil	PANAPEVRTAINGLFQQLENPSAYNADQFASALRHIRTMLR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters