NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F065941

Metagenome / Metatranscriptome Family F065941

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F065941
Family Type Metagenome / Metatranscriptome
Number of Sequences 127
Average Sequence Length 50 residues
Representative Sequence MFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWQLPIHVHIIDP
Number of Associated Samples 111
Number of Associated Scaffolds 127

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 20.00 %
% of genes near scaffold ends (potentially truncated) 3.94 %
% of genes from short scaffolds (< 2000 bps) 3.94 %
Associated GOLD sequencing projects 104
AlphaFold2 3D model prediction Yes
3D model pTM-score0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (99.213 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(22.047 % of family members)
Environment Ontology (ENVO) Unclassified
(67.717 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.953 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 22.78%    β-sheet: 12.66%    Coil/Unstructured: 64.56%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 127 Family Scaffolds
PF00268Ribonuc_red_sm 3.94
PF05488PAAR_motif 3.15
PF03477ATP-cone 0.79

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 127 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 3.94
COG4104Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretionIntracellular trafficking, secretion, and vesicular transport [U] 3.15


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A99.21 %
All OrganismsrootAll Organisms0.79 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10075650All Organisms → Viruses → Predicted Viral1334Open in IMG/M
3300014959|Ga0134299_1052189Not Available587Open in IMG/M
3300019098|Ga0188859_1006931Not Available636Open in IMG/M
3300031519|Ga0307488_10837467Not Available506Open in IMG/M
3300031644|Ga0308001_10055433Not Available1706Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine22.05%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh13.39%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine10.24%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater10.24%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.30%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.72%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake4.72%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.94%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine2.36%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.36%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.36%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.57%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.57%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.57%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.57%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.57%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water1.57%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake0.79%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.79%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.79%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.79%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.79%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.79%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.79%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.79%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.79%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.79%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300004460Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005914Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJEnvironmentalOpen in IMG/M
3300005931Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9EnvironmentalOpen in IMG/M
3300005933Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKEEnvironmentalOpen in IMG/M
3300005971Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_AEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006190Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNAEnvironmentalOpen in IMG/M
3300006332Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200mEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009428Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300009440Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512EnvironmentalOpen in IMG/M
3300009476Pelagic marine microbial communities from North Sea - COGITO_mtgs_110407EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009526Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300014959Marine microbial communities to study oil droplet degradation from Trondheimsfjord, Norway - 0148 : 4 days incubationEnvironmentalOpen in IMG/M
3300016747Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017725Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29EnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017962Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019098Metatranscriptome of marine microbial communities from Baltic Sea - GS684_0p1EnvironmentalOpen in IMG/M
3300020177Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020452Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)EnvironmentalOpen in IMG/M
3300020463Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300020810Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041404US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022842Saline water microbial communities from Ace Lake, Antarctica - #46EnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300023119Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaGEnvironmentalOpen in IMG/M
3300023273Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaGEnvironmentalOpen in IMG/M
3300023294Saline water microbial communities from Ace Lake, Antarctica - #732EnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025425Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)EnvironmentalOpen in IMG/M
3300025438Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025676Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031599Marine microbial communities from water near the shore, Antarctic Ocean - #71EnvironmentalOpen in IMG/M
3300031608Marine microbial communities from water near the shore, Antarctic Ocean - #1EnvironmentalOpen in IMG/M
3300031621Marine microbial communities from Western Arctic Ocean, Canada - AG5_SurfaceEnvironmentalOpen in IMG/M
3300031627Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1EnvironmentalOpen in IMG/M
3300031638Marine microbial communities from Western Arctic Ocean, Canada - CB4_surfaceEnvironmentalOpen in IMG/M
3300031644Marine microbial communities from water near the shore, Antarctic Ocean - #5EnvironmentalOpen in IMG/M
3300031655Marine microbial communities from water near the shore, Antarctic Ocean - #282EnvironmentalOpen in IMG/M
3300031675Marine microbial communities from Western Arctic Ocean, Canada - CB21_SCMEnvironmentalOpen in IMG/M
3300032373Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1013612513300000115MarineMFKVVIGEWPIHERFILTSCDDTYFDQYFPRFYNTYKEN
DelMOWin2010_1007565023300000117MarineMFKNVTGDWPTHERFILTSCDDLYFIKYFPRFYKTYKKHWKLPVHVHLIDPSDNSIQRLDGLDVS
JGI20152J14361_1000707353300001344Pelagic MarineMFKDVIGDWPTHDKFILTSCDGKYFDQYFPRFYKTFMEHWRLPIHVHIIDPTQDSRYKLD
JGI24003J15210_1009827523300001460MarineMFTDIQGAWPTHERMILVSCDETYFNRYFPRFYKTFTKHWQLPIHAHL
Ga0066224_109615923300004457MarineMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWQLPIHVHIIDP
Ga0066222_109785713300004460MarineMFNHVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWKLPIHVHIIDPS
Ga0075117_106788023300005914Saline LakeMFKDVIGDWPTHERFILTSCDERYFEQYFPRFYKTYSEHWKLP
Ga0075117_122159723300005914Saline LakeMFTDVQGDWPTHERFILTSCDDLYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSR
Ga0075119_111002023300005931Saline LakeMFNNVIGDWPTHERFILTSCDDRYFDQYFPRFYKTYKEHWQLPIHVHIIDPSD
Ga0075118_1028353823300005933Saline LakeMFDQVIGDWPTHERFILTSCDERYFEQYFPRFYKTYSEHWKLPI
Ga0066370_1003908913300005971MarineMFEQVIGDWPRHARFILTSCDDKYFLKYFPRFYKTY
Ga0075462_1002416743300006027AqueousMFKDVLGDWPTHDRFILTSCDDKYFQDYFPRFYKTYTEHWQLPI
Ga0075446_1017282723300006190MarineMFADVIGDWPTHKRFILTSCDDKYFEQYFPRFYKT
Ga0068500_105846123300006332MarineMFNNVIGDWPTHERFILTSCDEKYFNRYFPRFYKTFTKKWRLPIHVHVIDPSQKSLERLDGLGVS
Ga0098055_120274713300006793MarineMFNDVIGDWPTQERFILTSCDEKYFNRYFPRFYNTFTKKWQLPIHVHVIDPSQ
Ga0070749_1007690613300006802AqueousMFTDVLGEWPTHDRFILCSCDDAYLDRYFPRFYSTFTEH
Ga0075476_1014051013300006867AqueousMFKDIIGDWPTHDRFIMTSCDDKYFQDYFPRFYKTYAEHWQLPIHVHIIDPSDTSM
Ga0075476_1030698423300006867AqueousMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYTEHWQLPIHVHIIDPSDTSMQRL
Ga0075477_1026417813300006869AqueousMFKDVIGDWPTHERFILTSCDERYFDQYFPRFYKTYTEHWQLPI
Ga0098050_102394833300006925MarineMFKDVIGNWPTHDKFILTSCDDKYFQDFFPRFYKTFTEHW
Ga0099849_114658913300007539AqueousMFKNVTGDWPTHERFILTSCDDLYFIKYFPRFYKTYKKHWKLPVHVHLIDPSDNSIQRLDGL
Ga0075480_1041539623300008012AqueousMFKDVIGDWPTRDRFILTSCDDKYFNQYFPRFYKTYREHWQLPIH
Ga0102963_120958923300009001Pond WaterMFKDVIGDWPTHKRFILTSCDDRYFEQYFPRFYKTYTEHWQLPIHIHII
Ga0115552_110949023300009077Pelagic MarineMFKDVIGDWPTHDKFILTSCNAKYFDQYFPRFYKTFMEHWRLPIHVHIIDPTQDSRYKL
Ga0115551_135915813300009193Pelagic MarineMFKVVIGEWPIHERFILTSCDDTYFDQYFPRFYNTYK
Ga0114994_1085487413300009420MarineMFADVIGDWPIHERFILTSCDDKYFEQYFPRFYKTYKEHWQLPIHIHIIDPS
Ga0114998_1021127423300009422MarineMFTDIQGAWPTHERMILVSCDETYFNRYFPRFYKTFTKHWQL
Ga0115548_126735723300009423Pelagic MarineMFKDVIGDWPTYERFILTSCDERYFDQYFPRFYKTYTEHWQLPIHVHIIDPSD
Ga0114915_103247143300009428Deep OceanMFKDVIGDWPTHERFILTSCDDKYFDQYFPRFYKTY
Ga0114915_109082713300009428Deep OceanMFTDVQGAWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSRYR
Ga0115545_108218913300009433Pelagic MarineMFKDVIGDWPTHERFIMTSCDDKYFEQYFPRFYKTYTEHWQLPIHVHIIDPSDTSMQR
Ga0115545_111555723300009433Pelagic MarineMFKDVIGDWPTYERFILTSCDERYFDQYFPRFYKTYTEHWQLPIHVHIIDPSDTSMQRL
Ga0115546_107771323300009435Pelagic MarineMFKDVIGEWPMHERFILTSCDDTYFDQYFPRFYNTYKENWHLPI
Ga0115556_115166823300009437Pelagic MarineMFKDVIGDWPTHERFILTSCDERYFDQYFPRFYKTYTEHWQLPIHVHIIDPSDTSMQRLDKLHVT
Ga0115561_124255023300009440Pelagic MarineMFKDVIGDWPTHERFIMTSCDDKYFQEYFPRFYKTYTEHWQLPIHVHIIDPSDTSMQRLDKLD
Ga0115555_113245823300009476Pelagic MarineMFNDVIGDWPTHERFILTSCDDKYFDQYFPRFYKTYKE
Ga0115571_110124723300009495Pelagic MarineMFTDVQGDWPTHERFILTSCDDRYFNQYFPRFYKTYSEHWQLPIHVHIIDPSQT
Ga0115567_1055988313300009508Pelagic MarineMFKDVIGDWPTHDKFILTSCNAKYFDQYFPRFYKTFMEHWRLPIHVH
Ga0115004_1022090313300009526MarineMFTDVQGAWPTHERFILTSCDERYFEQYFPRFYKTYSEHWKLPIHVHIIDPTQTSRYRLDRLP
Ga0115000_1065364623300009705MarineMFKDVIGDWPTHERFILTSCDNRYFERYFPRFYKTYSEHWKLP
Ga0115012_1184730513300009790MarineMFKDVLGKWPTHERFILTSCDDNYFDQYFPRFYKTFTQHWKLPIHVHVIDPSDSSMQRLESLDV
Ga0098049_109313923300010149MarineMFKDVIGDWPMHERFILTSCDDKYFDQYFPRFYKTYNEHWRLPIHVHIIDPSHTSIQRLK
Ga0129348_126215023300010296Freshwater To Marine Saline GradientMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYT
Ga0133547_1174124023300010883MarineMFKDVIGDWPTHERFILTSCDDRYFDQYFPRFYKTYSEYWQLPIHVHIIDPTQTSRYRLDRLP
Ga0163111_1027019723300012954Surface SeawaterMFEQVIGDWPSHKRFILTSCDTKYFDQYFPRFFKTYSEHWSLPIHVHIIDPTQNARYRLDRLPV
Ga0134299_105218913300014959MarineMFKDIIGDWPTHDRFILTSCDDRYFDQYFPRFYKTYTEHWQLPIHIHIIDPSDTSMQRLDHLDVTYT
Ga0182078_1093521623300016747Salt MarshMFKDIIGHWPTHDRFIMTSCDDRYFEQYFPRFYKTYAEHWQLP
Ga0180120_1023742123300017697Freshwater To Marine Saline GradientMFKVVIGEWPIHERFILTSCDDTYFDQYFPRFYNTYKENWHLPIHVHIID
Ga0181369_112186313300017708MarineMFKDVIGDWPMHERFILTSCDDKYFDQYFPRFYKTYNEHWRLPIHVHIIDP
Ga0181391_103584113300017713SeawaterMFKNVIGDWPTHNRLILTSCDDKYFDQYFPRFYKTFTEHWKLPIHVHIIDPTQKSRDRLRALP
Ga0181398_109421023300017725SeawaterMFKDVIGDWPTHERFIMTSCDDKYFEQYFPRFYKTYTEHWQLPIHVHIIDP
Ga0181381_111777023300017726SeawaterMFKDVIGDWPTHERFIMTSCDDKYFEQYFPRFYKTY
Ga0181421_114505813300017741SeawaterMFKDVIGDWPTNERFILTSCDDKYFDRYFPRFYNSYRKHWQLPIHVHVIDPSDISLQRLE
Ga0181389_108219323300017746SeawaterMFKDVLGEWPMYDEFILTSCDEKYFNKYFPRFYKTFTEKWQLPIHVHVVDPSAQSL
Ga0181389_118131423300017746SeawaterMFENVIGNWPSHDRLILTSCDEAYFNKYFPRFYQTFTQHWQLPIHVHMIDPSQQSLGRLEDLG
Ga0181405_110258313300017750SeawaterMFKDVLGEWPMHDEFILTSCDEKYFNKYFPRFYKTFTEKWQLPIHVHVVDPS
Ga0181422_108022823300017762SeawaterMFKDVIGEWPMHERFILTACDDKYFQDYFPRFYKTYTKHWQLPIHV
Ga0181410_120616823300017763SeawaterMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSRYRL
Ga0181386_117120113300017773SeawaterMFKDVIGNWPTHERFILTSCDDKYFDQYFPRFYKTYTEHP
Ga0181379_105081133300017783SeawaterMFKNVIGDWPTHNRLILTSCDDKYFDQYFPRFYKTFTEHWKLPIHV
Ga0181379_121078423300017783SeawaterMFKDVIGDWPTLERFILTSCDDKYFEQYFPRFYKTYKQHWQLPIHVHIIDPS
Ga0181424_1004454713300017786SeawaterMFKDVIGNWPKHDRFILTSCDEKYFHQYFPRFYATYKRHWQLPIHVHVIDPWSDTKEKLD
Ga0181565_1038371613300017818Salt MarshMFNNFIGEWPKKERFILTSCDEIYFNEYFPRFYKTY
Ga0181577_1034211123300017951Salt MarshMFNNFIGEWPKKERFILTSCDEIYFNEYFPRFYKTYSEL
Ga0181577_1036377823300017951Salt MarshMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYAEHWQLPIHVHIIDPSDTSMRRLDNLD
Ga0181581_1077359423300017962Salt MarshMFKDIIGHWPTHDRFIMTSCDEKYFQDYFPRFYKTYAEHWQLPIHVHIID
Ga0181590_1008803243300017967Salt MarshMFKDVLGDWPTHERFILTSCDDEYFYRYFPRFYKTYKEHWQLPIHVHIIDPSDTSMRRLDKLDV
Ga0181561_1036896913300018410Salt MarshMFKDIIGDWPTHDRFIMTSCDEKYFQNYFPRFYKTYAEHWQLPIHVHIIDPSDTSM
Ga0181558_1066535513300018417Salt MarshMFNNFIGEWPKKERFILTSCDEIYFNEYFPRFYKTYSELWELPIHVHIIDPTKNSMRRLEQLP
Ga0181592_1020019613300018421Salt MarshMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYTEHWQLPIHIHIIDPSDTSK
Ga0181592_1055021823300018421Salt MarshMFKDIIGHWPTHDRFIMTSCDEKYFQDYFPRFYKT
Ga0181568_1148303113300018428Salt MarshMFEKVIGDWPTHERVILTSCDEQYFREYFPRFYKTYTE
Ga0188859_100693113300019098Freshwater LakeMFSDVIGDWPTHGRFILTSCDDKYFNQYFPRFYKSYKQHWQLPIHVHIID
Ga0181596_1037106213300020177Salt MarshMFKDVLGDWPTNDRFILTSCDDKYFQDYFPRFYKTYAEHWQLPIHVHIIDPLDTSIQRLD
Ga0181605_1018419723300020188Salt MarshMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYTEHWQLPIHIHIIDPSDTSKQRLDRLD
Ga0181597_1037168913300020194Salt MarshMFKDVLGDWPTNDRFILTSCDDKYFQDYFPRFYKTYAEHWQLPIHVHIIDPLDTSIQRLDNLD
Ga0211545_1030628213300020452MarineMFNNVIGDWPTHDRLILTSCDEKYFNRYFPRFYKTFTKKWQLPIHVHVIDPSQ
Ga0211676_1044149523300020463MarineMFKDVIGKWPTHERFILTSCDDKYFDQYFPRFYKTYTEHWQLPIHLHIIDPSEKS
Ga0211577_1010803943300020469MarineMFKDVIGDWPTHERFIMTSCDDKYFEQYFPRFYKTYTEHW
Ga0211543_1062470323300020470MarineMFEKVVGSWPREQRFILTSCDDQYFTQYFPRFYKTFSECWDLPIHVHVIDPSVLTMKRLESLKVSYTHCITDP
Ga0181598_118363513300020810Salt MarshMFKDVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYAE
Ga0213858_1023195213300021356SeawaterMFKDIIGDWPTHDRFILTSCDDLYFTKYFPRFYNTYK
Ga0222716_1025086713300021959Estuarine WaterMFKDVIGEWPNHDRFILTSCDDKYFQQYFPRFYKTYKEHWQL
Ga0222716_1060867723300021959Estuarine WaterMFQDVIGDWPTHDKFILTSCDEKYFQQYFPRFYKTYTEFWNM
Ga0222719_1028651913300021964Estuarine WaterMFKDVIGDWPTHERFILTSCDDRYFERYFPRFYKTYSEHWQ
Ga0222632_105627023300022842Saline WaterMFKDVIGDWPTHERFILTSCDDLYFEQYFPRFYKTYTE
(restricted) Ga0233427_1014907213300022933SeawaterMFHDVIGDWPTQERFILTSCDEKYFNRYFPRFYKTFTKQWQLPIHVHVI
Ga0255762_1029504523300023119Salt MarshMFNNFIGEWPKKERFILTSCDEIYFNEYFPRFYKTYSELWQLPIHVHIIDPTKNSKHRLEQLPVSY
Ga0255763_106592033300023273Salt MarshMFKDIIGDWPTHDRFIMTSCDDKYFQDYFPRFYKTYAEHWQLPIHV
Ga0222670_102345823300023294Saline WaterMFKDVIGDWPTHERFILTSCDDLYFEQYFPRFYKTYSEHWKLPIHVH
(restricted) Ga0233439_1040624313300024261SeawaterMFKDVIGDWPTIERFILTSCDDKYFEQYFPRFYKTYKQHWQLPIHVHVIDPSD
Ga0209535_100492713300025120MarineMFTDIQGAWPTHERMILVSCDETYFNRYFPRFYKTFTKHWQLPIHAHLIDP
Ga0209535_116255023300025120MarineMFKDVIGDWPLYDHFILTSCDESYLNRYFPRFYRSFT
Ga0209634_117017023300025138MarineMFKDVIGDWPLYDHFILTSCDESYLNRYFPRFYRSFTQKWQLPIHVHVVDPSALS
Ga0209337_118775623300025168MarineMFEDVLGGWSTNDKVILTSCDEKYFNKYFPRFYKTFTEHWQLPIHVHLIDPSEKSLQRLK
Ga0208646_106022113300025425Saline LakeMFKDVIGDWPTHERFILTSCDERYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSRYRLDRLPV
Ga0208646_106319213300025425Saline LakeMFKDVIGDWPTHERFILTSCDDLYFEQYFPRFYKTYTEHWQL
Ga0208770_103422423300025438Saline LakeMFDQVLGDWPTHERFILTSCDDLYFKQYFPRFYKTYYEHWKLPIHVH
Ga0209405_111738213300025620Pelagic MarineMFKDVIGEWPMHERFILTSCDDNYFDQYFPRFYNTYKENWHLPIHVHIIDPSDNS
Ga0209194_107065523300025632Pelagic MarineMFKDVIGDWPTHDRFILTSCDERYFDQYFPRFYKTYTEHWQLPIHVHIIDPSDTS
Ga0209657_101315513300025676MarineMFKDVIGNWPKHDKFILTSCDDKYFQEYFPRFYKTYTEHWQ
Ga0208547_110316323300025828AqueousMFKDVIGNWPTHERFIMTSCDDKYFQKYFPRFYKTYTEH
Ga0209534_1012260513300025880Pelagic MarineMFKDVIGEWPMHERFILTSCDDNYFDQYFPRFYNTYKENWHLPIHVHI
Ga0209383_103053513300027672MarineMFADVIGDWPTHKRFILTSCDDKYFEQYFPRFYKTYKEHWQLPIHVHIIDPS
Ga0209710_116145823300027687MarineMFKDVIGDWPTHDKFILTSCDDRYFEQYFPRFYKTYNEHWQLPIHVHVIDPSDTSMQR
Ga0209709_1020535913300027779MarineMFNHVIGDWPTHERFILTSCDDRYFEQYFPRFYKTYSEYWQLPIHVHIIDPTQTSRYR
Ga0209711_1045249913300027788MarineMFTDVQGAWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWKLPIHVHIIDPTQTSRY
Ga0209830_1041735923300027791MarineMFADVIGDWPIHERFILTSCDDKYFEQYFPRFYKTYKEHW
Ga0209090_1005573953300027813MarineMFTDVQGAWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSRYRLD
Ga0209090_1008165723300027813MarineMFTDVQGAWPTHERFILVSCDEIYFNRYFPRFYKTFTEHWQLPIHAHIIDPSKE
Ga0256368_106329213300028125Sea-Ice BrineMFTDVQGAWPTHERFILTSCDERYFEQYFPRFYKTYSEHWKLPIHVHIIDPSQTSRYRLDRLPV
Ga0257110_129237613300028197MarineMFNNVIGDWPTQERLILTSCDEKYFNRYFPRFYKTYKEHWQLPIHVH
Ga0308010_105606913300031510MarineMFTDVQGAWPTHERFILTSCDNKYFDQYFPRFYKTYSEHW
Ga0307488_1008062613300031519Sackhole BrineMFKDVIGDWPTHERFILTSCDDLYFARYFPRFYKTYSEHWKLPIHVHIIDPSQT
Ga0307488_1016748713300031519Sackhole BrineMFKDVIGDWPTHDRFILTSCDDRYFEQYFPRFYKTYS
Ga0307488_1083746713300031519Sackhole BrineMFKDVIGEWPTHDKFILTSCDDKYFQDFFPRFYKTFTE
Ga0308007_1020256523300031599MarineMFNNVIGDWPTQERFILTSCDDKYFEQYFPRFYNTYKQHWQLPIHVHIIDPSDTS
Ga0307999_114891723300031608MarineMFADVIGDWPTHERFILTSCDNKYFEQYFPRFYKTYKEHWQLPIHVHIIDPSVE
Ga0302114_1020117513300031621MarineMFTDIQGAWPTHERMILVSCDETYFNRYFPRFYKTFTKHWQLPIHAH
Ga0302118_1034555413300031627MarineMFKDVIGDWPTHDRFILTSCDNKYFEQYFPRFYKTYS
Ga0302125_1002770813300031638MarineMFTDIQGAWPTHERFILTSCDERYFERYFPRFYKTYSEHWKLPIHVHIIDPTQTSRHRLD
Ga0302125_1026446213300031638MarineMFKDVIGDWPTHDKFILTSCDDRYFEQYFPRFYKTYNEHW
Ga0308001_1005543333300031644MarineMFDDVLGDWPTYDRLILTSCDEVYFNKYFPRFYNTFTQHWQLPIHVHVIDPSEKSL
Ga0308018_1028386713300031655MarineMFADVIGDWPTHKRFILTSCDDKYFEQYFPRFYKTYKEHWQLPIHV
Ga0302122_1017382523300031675MarineMFTDVQGAWPTHERFILTSCDDRYFEQYFPRFYKTYSEHWKLPIHVHIIDPTQTSRYRLDRLP
Ga0302122_1021550723300031675MarineMFKDVIGDWPMHERFILTSCDDKYFQNYFPRFYKTYTKHWQLPIHVHVIDLSDTS
Ga0316204_1021910513300032373Microbial MatMFGDVIGDWPTYNRFILTSCDDKYFEQYFPRFYKTYKEHWQLPIHVH


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