Metagenome / Metatranscriptome Family F065919

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065919
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	91 residues
Representative Sequence	VDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTNASGKCAVPCV
Number of Associated Samples	111
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.30 %
% of genes near scaffold ends (potentially truncated)	85.83 %
% of genes from short scaffolds (< 2000 bps)	92.91 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.213 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.961 % of family members)
Environment Ontology (ENVO)	Unclassified (37.008 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.031 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 38.98% Coil/Unstructured: 61.02%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
f.4.1.1: Outer membrane protein	d1p4ta_	1p4t	0.77268
f.4.1.0: automated matches	d3qraa_	3qra	0.74897
f.4.1.1: Outer membrane protein	d1qjpa_	1qjp	0.72182
b.61.1.0: automated matches	d2y32a_	2y32	0.69257
b.61.4.1: Quinohemoprotein amine dehydrogenase A chain, domain 3	d1pbya5	1pby	0.69099

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF03795	YCII	6.30
PF13564	DoxX_2	3.94
PF08281	Sigma70_r4_2	3.15
PF02687	FtsX	2.36
PF12833	HTH_18	1.57
PF01663	Phosphodiest	1.57
PF12840	HTH_20	1.57
PF01022	HTH_5	1.57
PF07676	PD40	1.57
PF08818	DUF1801	1.57
PF00565	SNase	0.79
PF01875	Memo	0.79
PF01344	Kelch_1	0.79
PF13649	Methyltransf_25	0.79
PF01799	Fer2_2	0.79
PF02517	Rce1-like	0.79
PF06762	LMF1	0.79
PF01011	PQQ	0.79
PF02661	Fic	0.79
PF08450	SGL	0.79
PF13620	CarboxypepD_reg	0.79
PF01402	RHH_1	0.79
PF12680	SnoaL_2	0.79
PF05016	ParE_toxin	0.79
PF13847	Methyltransf_31	0.79
PF04392	ABC_sub_bind	0.79
PF02604	PhdYeFM_antitox	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	6.30
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.57
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.57
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.57
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	0.79
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.79
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.79
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.79
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.79
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.79
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.21 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.21 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.21 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	62.20 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	56.69 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.57 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.69 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.69 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.57 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.69 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	1.57 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.69 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.57 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Unclassified	root	N/A	0.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	56.69 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1.57 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Unclassified	root	N/A	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02SJLFP	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101171389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300000789\|JGI1027J11758_12477646	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300000890\|JGI11643J12802_12232623	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300004114\|Ga0062593_100116226	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300004156\|Ga0062589_102698584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300004463\|Ga0063356_104999008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300005093\|Ga0062594_101783853	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300005167\|Ga0066672_10424228	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300005171\|Ga0066677_10217119	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300005172\|Ga0066683_10339747	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300005177\|Ga0066690_10503124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300005180\|Ga0066685_10050228	All Organisms → cellular organisms → Bacteria	2675	Open in IMG/M
3300005180\|Ga0066685_10171810	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300005293\|Ga0065715_10134236	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300005294\|Ga0065705_10764605	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	624	Open in IMG/M
3300005295\|Ga0065707_10037955	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300005332\|Ga0066388_101126433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1332	Open in IMG/M
3300005335\|Ga0070666_10990192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300005354\|Ga0070675_100001883	All Organisms → cellular organisms → Bacteria	15480	Open in IMG/M
3300005354\|Ga0070675_100773282	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005364\|Ga0070673_100324016	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300005364\|Ga0070673_101990517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300005446\|Ga0066686_10327974	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300005451\|Ga0066681_10593921	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005458\|Ga0070681_10779597	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300005468\|Ga0070707_100514785	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300005540\|Ga0066697_10577071	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005549\|Ga0070704_100833768	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300005563\|Ga0068855_100289205	All Organisms → cellular organisms → Bacteria	1817	Open in IMG/M
3300005576\|Ga0066708_11033473	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300005764\|Ga0066903_100435331	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300005764\|Ga0066903_104003219	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300005841\|Ga0068863_100223067	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300005841\|Ga0068863_102044489	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300006031\|Ga0066651_10645542	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300006196\|Ga0075422_10177313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	865	Open in IMG/M
3300006237\|Ga0097621_101299184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300006358\|Ga0068871_100142925	All Organisms → cellular organisms → Bacteria	2036	Open in IMG/M
3300006871\|Ga0075434_100587532	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1133	Open in IMG/M
3300007265\|Ga0099794_10420895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300007265\|Ga0099794_10681450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300009012\|Ga0066710_100199785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2844	Open in IMG/M
3300009090\|Ga0099827_10950357	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300009094\|Ga0111539_12917579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300009094\|Ga0111539_13004233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300009137\|Ga0066709_100219258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2517	Open in IMG/M
3300009137\|Ga0066709_101644579	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	916	Open in IMG/M
3300009137\|Ga0066709_102234941	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300009137\|Ga0066709_103645701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300009162\|Ga0075423_11784103	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300009162\|Ga0075423_13105272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300009551\|Ga0105238_10369104	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300009553\|Ga0105249_13164271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300009792\|Ga0126374_10569141	Not Available	830	Open in IMG/M
3300010047\|Ga0126382_10470700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1002	Open in IMG/M
3300010321\|Ga0134067_10445127	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300010333\|Ga0134080_10372419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300010336\|Ga0134071_10428241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300010360\|Ga0126372_11978809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300010399\|Ga0134127_12550043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300010401\|Ga0134121_10924765	All Organisms → cellular organisms → Bacteria → Acidobacteria	849	Open in IMG/M
3300011270\|Ga0137391_11496693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300012201\|Ga0137365_10221862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1410	Open in IMG/M
3300012285\|Ga0137370_10791126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300012357\|Ga0137384_10343220	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300012359\|Ga0137385_10157591	All Organisms → cellular organisms → Bacteria → Acidobacteria	1995	Open in IMG/M
3300012360\|Ga0137375_10105494	All Organisms → cellular organisms → Bacteria	2857	Open in IMG/M
3300012685\|Ga0137397_11218741	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300012903\|Ga0157289_10091207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	855	Open in IMG/M
3300012922\|Ga0137394_10249297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1518	Open in IMG/M
3300012922\|Ga0137394_11052481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300012923\|Ga0137359_11270497	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300012929\|Ga0137404_11727717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300012955\|Ga0164298_11415077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300012977\|Ga0134087_10705564	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300012985\|Ga0164308_12012788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300013306\|Ga0163162_10853521	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300013308\|Ga0157375_10740457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300014325\|Ga0163163_10307337	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300014969\|Ga0157376_11581982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	689	Open in IMG/M
3300015200\|Ga0173480_10816890	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300015372\|Ga0132256_102360936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300015374\|Ga0132255_103685651	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300016404\|Ga0182037_11371991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300018482\|Ga0066669_10245875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1410	Open in IMG/M
3300019356\|Ga0173481_10413702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300019879\|Ga0193723_1058185	All Organisms → cellular organisms → Bacteria → Acidobacteria	1128	Open in IMG/M
3300025901\|Ga0207688_10698380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300025909\|Ga0207705_11340939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300025919\|Ga0207657_10026359	All Organisms → cellular organisms → Bacteria	5343	Open in IMG/M
3300025921\|Ga0207652_10329701	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300025922\|Ga0207646_11040949	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300025926\|Ga0207659_10843303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300025930\|Ga0207701_11413261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300025932\|Ga0207690_11873434	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300025940\|Ga0207691_10469442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1070	Open in IMG/M
3300025940\|Ga0207691_10820891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300025949\|Ga0207667_11331926	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300025960\|Ga0207651_11519062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300026088\|Ga0207641_10663688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1025	Open in IMG/M
3300026088\|Ga0207641_10665975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300026118\|Ga0207675_101367952	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300026306\|Ga0209468_1142690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300026329\|Ga0209375_1263761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300026524\|Ga0209690_1125272	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1003	Open in IMG/M
3300026530\|Ga0209807_1186117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300026538\|Ga0209056_10537736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300026542\|Ga0209805_1173504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300028380\|Ga0268265_10399938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1269	Open in IMG/M
3300028784\|Ga0307282_10654539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300028799\|Ga0307284_10175904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300028807\|Ga0307305_10190417	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300031226\|Ga0307497_10277049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300031421\|Ga0308194_10036066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1194	Open in IMG/M
3300031716\|Ga0310813_10288756	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300031720\|Ga0307469_10178157	All Organisms → cellular organisms → Bacteria	1631	Open in IMG/M
3300031740\|Ga0307468_101889049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300031858\|Ga0310892_10223991	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1145	Open in IMG/M
3300031858\|Ga0310892_10334678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	966	Open in IMG/M
3300031908\|Ga0310900_10010741	All Organisms → cellular organisms → Bacteria	4498	Open in IMG/M
3300031940\|Ga0310901_10152415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300031943\|Ga0310885_10543472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300032013\|Ga0310906_10168804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1296	Open in IMG/M
3300032013\|Ga0310906_10380452	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	927	Open in IMG/M
3300032075\|Ga0310890_10234248	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300032179\|Ga0310889_10273365	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.29%
Host-Associated	Host-Associated	30.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.29%
Plants	Host-Associated → Plants	30.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.24%
Roots	Host-Associated → Plants → Roots	2.36%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.20%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.24%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.87%
Loam	Environmental → Terrestrial → Soil → Loam	7.09%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.57%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.36%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.57%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.09%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.15%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.15%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.57%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.57%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.57%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.79%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.79%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_01204870	2070309004	Green-Waste Compost	VAAAGCDLVAGCGHGQFPPPAVRADGTFDVDGTYRVEVGPISINPPPPAKFSGVLKGQTVTITVTPSDPALQPATYMLQLTPGTGKCAVPCV
INPhiseqgaiiFebDRAFT_1011713892	3300000364	Soil	ETPTQPRDTTLPTGRWTGDGACLSVAVDGCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPGDPSPRPASYVLQLTNGTGKCSVPCV*
JGI1027J11758_124776461	3300000789	Soil	DGTFEVNGTYRIEVGPISINPAPPATFTGVLKGQTLTLXVMPSDPSLRPASYVLQPTNGTGKCAVPCV*
JGI11643J12802_122326233	3300000890	Soil	VVGCGHGQFKPPVVHADGAFEVNGTYRIEVGPISIDPAPPAIFSGVVRGQTLTISVTPSDRSVLPVSYVLRLTNESGKCSVPCL*
Ga0062593_1001162261	3300004114	Soil	FPQPVVRADGTFEVNGTYRIEVGPISINPAPPATFTGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCV*
Ga0062589_1026985842	3300004156	Soil	VGCGHGQFPPPAVRADGTFEVSGTYRIEAGPVGINPAPPAMFSGFVRDGTLTLSVTPGDPSLQPASYVLQLTNASAQCTVPCV*
Ga0063356_1049990082	3300004463	Arabidopsis Thaliana Rhizosphere	TTLPTGRWTTGNGACLFVARDGCDLVVGCGHGQFPPPAVRADGTFEVSGTYRIEAGPVGINPAPPAMFSGFVRNGTLTLSVTPSDPSLQPASYVLQLTNASAQCTVPCV*
Ga0062594_1017838532	3300005093	Soil	DGCDLVVGCGHGQFPPPVVRADGTFEVNGTYRIEVGPISINPAPPATFSGILKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCL*
Ga0066672_104242283	3300005167	Soil	DGCDLVVGCGHGQFPPPVVHADGTFEIDGTYRIEAGPVSINPAPPAVFSGILRDQALTLSVTPSDPSLRPASYVLQLTNGSGKCAVPCV*
Ga0066677_102171192	3300005171	Soil	DLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLSSQTLTLSVTPIDPSLRPASYVLQLTNASGKCAVPCV*
Ga0066683_103397472	3300005172	Soil	VDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPITISPAPPAMFSGVLRGQTLTLSVTPGDPSLRPASYVLQLTNASGKCAVPCV*
Ga0066690_105031243	3300005177	Soil	DGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLSSQTLTLSVTPIDPSLRPASYVLQLTNASGKCAVPCV*
Ga0066685_100502281	3300005180	Soil	CLSVAVDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLSSQTLTLSVTPIDPSLRPASYVLQLTNASGKCAVPCV*
Ga0066685_101718101	3300005180	Soil	VDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTNASGKCAVPCV*
Ga0065715_101342364	3300005293	Miscanthus Rhizosphere	VVHADGGFQVNGTYRVEVGPISTNPPPPAIFSGTVKGETLTLTVTSSDRSVPPATYVLHLTNAPGKCAVPCL*
Ga0065705_107646051	3300005294	Switchgrass Rhizosphere	AADGCDLVVGCGHGQFPPPVVHAEGTFEVNGTYRIEVGPISINPAPAAMFSGVLTGQTLTLSVTSSDPSLRPASYVLKLTNGNGKCAVPCV*
Ga0065707_100379551	3300005295	Switchgrass Rhizosphere	QFPAPVVHADGTFEVSGTYRVEVGPISIHPAPPATFSGVVKGQTLTITVAPSDRSVAPASYVLHLTNAPGKCAVPCL*
Ga0066388_1011264332	3300005332	Tropical Forest Soil	VAIDGCDLVVGCGHGQFAPPVVRADGTFDADGTYRIEVGPISINPAPPAHFSGILRGQSLSLTVMPGDPALRPATYGFQLTNGSGKCAVPCV*
Ga0070666_109901921	3300005335	Switchgrass Rhizosphere	CGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPSDPPQRPASYVLQLTNGTGKCSVPCV*
Ga0070675_1000018837	3300005354	Miscanthus Rhizosphere	VAADGCDLVVGCGHGQFPPPVVRADGTFEVNGTYRIEVGPISINPAPPATFSGILKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCL*
Ga0070675_1007732821	3300005354	Miscanthus Rhizosphere	VGRWTGDGGCLSVAVDGCDLVVGCGHGQFAQPDVHGDGTFEVNGTYRIEAGPISINPSPPATFSGVLKGQTLTLSVMPSDPSLRAASYVLQLTSVTGKCTVPCL*
Ga0070673_1003240162	3300005364	Switchgrass Rhizosphere	PTGRWTGDGACLSVAVDGCDLVVGCAHGQFAQPDVHGDGTFEVNGTYRIEAGPISINPAPPATFSGVVKGQTLTLSVMPGDPSLRPASYVLQLTNGRGKCAVPCL*
Ga0070673_1019905171	3300005364	Switchgrass Rhizosphere	PDTTLRPSQWTGNPGCLSVTVDGCDLVVGCGHGQFPQPVVHADGGFQVNGTYRVEVGPISTNPPPPAIFSGTVKGETLTLTVTSSDRSVPPATYVLHLTNAPGKCAVPCL*
Ga0066686_103279742	3300005446	Soil	LSVTDEACDLVVGCGHGQFPRPAVHPDGTYAADGTYRIEAGPISINPAPPAKFSGVLTASTLTVRVVPSDTSLRPASYTLRLTNGSGRCAVPCL*
Ga0066681_105939212	3300005451	Soil	LSVAVDGCDLVVGCGHGQFPSPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLKGQTLMISVTPSDPSLRPASYVLQLTHGTGKCAVPCV*
Ga0070681_107795972	3300005458	Corn Rhizosphere	VHADGTFEVNGTYRIEVGPISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNGAGKCTVPCL*
Ga0070707_1005147851	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VRADGTFEVSGTYRIEVGPVSIDPAPPAMFSGVLRGQTLTLSVTPSNPSLRPGSYALQLTNTSGKCAVPCV*
Ga0066697_105770712	3300005540	Soil	QPRDTTLPTGRWTGDGGCLSVAVAACDLVVGCGHGQFPPPAVRPDGTFEVNGTYRIEVGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYALQLTNASGKCAVPCV*
Ga0070704_1008337682	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	TGNPGCLSVTVDGCDFVVGCGHGQFPQPVVHADGGFQVNGTYRVEVGPISTNPPPPAIFSGTVKGETLTLTVTSSDRSVPPATYVLHLTNAPGKCAVPCL*
Ga0068855_1002892054	3300005563	Corn Rhizosphere	MGDGACMFAAVDGCDLVVGCGHGQFPPPTVHADGTFEVNGTYRIEVGPISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNG
Ga0066708_110334732	3300005576	Soil	GCGHGQFPMPLVRADGTFQVAGTYRIEAGPISINPAPPATFSGTLNGGMLMLTVTPGDPSLQPASYSLQLTTASGKCTVPCV*
Ga0066903_1004353312	3300005764	Tropical Forest Soil	VAIDGCDLVVGCGHGEFAPPVVRADGTFDADGTYRIEVGPISINPAPPAHFSGILRGQSLTLTVTPGDPALRPATYGFQLTNGSGKCAVPCV*
Ga0066903_1040032191	3300005764	Tropical Forest Soil	DLVVGCGHGRFPIPTAAGTFQVDGTYRIEVGPISIDPPPPAMFSGVLTGHTLTLTVTPSNPSLRPATYVLQFTSVTGKCTVPCV*
Ga0068863_1002230671	3300005841	Switchgrass Rhizosphere	PVVRADGTFEVNGTYRIEVGPISINPAPPATFSGILKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCL*
Ga0068863_1020444891	3300005841	Switchgrass Rhizosphere	TPTQPRNTTLTAGRWAGDGGCLSVAADGCDLVVGCGHGQFPSPVVRADGTFEVNGTYRIEVGPISINPAPPATFSGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCV*
Ga0066651_106455421	3300006031	Soil	QFPPPVVHADGTFEVNGTYRIEVGPITISPAPPAMFSGVLRGQTLTLSVTPGDPSLRPASYVLQLTNASGKCAVPCV*
Ga0075422_101773132	3300006196	Populus Rhizosphere	HGQFPAPVIHADGMFEVSGTYRIEVGPISIDPAPPATFSGIVKGQTMLITVTPSDRSVVPASYVLQLTNASGKCAVPCL*
Ga0097621_1012991842	3300006237	Miscanthus Rhizosphere	VHADGTFAVSGTYRIEVGPISINPAPPATFSGILRGDTLTLSVAPSDPSLRPASYVLQLITGTGKCAVPCV*
Ga0068871_1001429253	3300006358	Miscanthus Rhizosphere	LPAGRWTGDGGCLSVAVDGCDLVVGCGHGQFAQPDVHGDGTFEVNGTYRIEAGPISINPSPPATFSGVLKGQTLTLSVMPSDPSLRPASYVLQLTNSTGKCAVPCL*
Ga0075434_1005875323	3300006871	Populus Rhizosphere	VATDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISIDPAPPAIFSGVLKGQTLTLSVTPSDRSVPPASYVLHLTNGAGKCVVPCL*
Ga0099794_104208952	3300007265	Vadose Zone Soil	GRWTGDGGCLSVAVDGCDLVVGCGHGQLPPPVVHADGTFEINGTYRIEVGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTNASGKCAVPCV*
Ga0099794_106814501	3300007265	Vadose Zone Soil	ETTLPTGRWTGDGGCLSVAVDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLKGQTLTISVTPSDPSLRPASYVLQLTNGSGKCAVPCV*
Ga0066710_1001997851	3300009012	Grasslands Soil	PRNTTLPMGRWAGDGGCLSVAFDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPININPAPPAVFSGVLRGQTLALSVTPSDPSLRAASYVLQLTNASGKCAVPCV
Ga0099827_109503571	3300009090	Vadose Zone Soil	ADGTFEVNGTYRIEVGPITINPAPPATFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTNASGKCAVPCV*
Ga0111539_129175792	3300009094	Populus Rhizosphere	VAVDGCDLVVGCGHGQFPAPVIHADGMFEVSGTYRVEVGPISIDPAPPATFSGVVKGQTLTITVAPSDRSVVPASYVLHLTNASGKCAVPCL*
Ga0111539_130042332	3300009094	Populus Rhizosphere	QPRNTTLTAGRWTGDSGCLSVAADGCDLVVGCGHGHFPQPVVRADGTFEVNGTYRIEVGPISINPAPPATFTGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVLCV*
Ga0066709_1002192585	3300009137	Grasslands Soil	VHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLKGQTLTISVMPSDPSLRPASYVLQLTNGTGRCAVPCV*
Ga0066709_1016445792	3300009137	Grasslands Soil	LSVTDDGCDLVVGCGHGQFPRPVVHPDGTFAADGTYRIEAGPIAINPAPPAKFSGTLTASTMTVRVVPSDTSLRPASYTLRLTNGSGRCAVPCL*
Ga0066709_1022349411	3300009137	Grasslands Soil	ADGTFEVNGTYRIEVGPVSINPAPPATFSGVLRGQTLTLSVAPNDSSLRPASYVLQLTNSTGKCAVPCV*
Ga0066709_1036457012	3300009137	Grasslands Soil	GCGHGQFPPPVVHADGTFEIDGTYRIEAGPVSINPAPPAVFSGILRDQALTLSVTPSDPSLRPASYVLQLTNGSGKCAVPCV*
Ga0075423_117841031	3300009162	Populus Rhizosphere	HFPQPVVRADGTFEVTGTYRIEVGPISINPAPPATFTGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVLCV*
Ga0075423_131052721	3300009162	Populus Rhizosphere	CGHGQFAQPDVHADGTFAVSGTYRTEVGPISINPAPTATFSGALSGQTLTLSVAPSDPSLRPASYVLQLTNGTGKCSVPCV*
Ga0105238_103691043	3300009551	Corn Rhizosphere	MFAAVDGCDLVVGCGHGQFPPPTVHADGTFEVNGTYRIEVGPISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNGAG
Ga0105249_131642711	3300009553	Switchgrass Rhizosphere	TGRWTGDGACLSVAVDGCDLVVGCAHGQFTHPDVHGDGTFEVNGTYRIEAGPISINPAPPATFSGVVKGQTLTLSVMPSDPSLRAASYVLQLTNVTGKCTVPCL*
Ga0126374_105691411	3300009792	Tropical Forest Soil	VSGTYRIEAGPISIEPAPPATFSGVLAGDTLTLTVTPADSSMRPAMYVLRPTGGSGRCAVPCV*
Ga0126382_104707001	3300010047	Tropical Forest Soil	VAEQCDLVAGCGHGRFPAPVVSRDGTFAVSGTYRIEAGPISIEPAPPATFSGVLAGDTLTLTVTPADSSMRPAMYVLRPTGGSGRCAVPCV*
Ga0134067_104451272	3300010321	Grasslands Soil	GCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLSSQTLTLSVTPIDPSLRPASYVLQLTNASGKCAVPCV*
Ga0134080_103724192	3300010333	Grasslands Soil	LSVTDEGCDLVVGCGHGQFPRPAVHPDGTYAADGTYRIEAGPIGINPAPPAKFSGVLTASTLTVRVVPSDTSLRPASYTLRLTNGS
Ga0134071_104282412	3300010336	Grasslands Soil	VDGCDLVVGCGHGQFTQPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLSGQTLTLSVTPSDPSLRPASYVLQLTNGTGKCAVPCV*
Ga0126372_119788092	3300010360	Tropical Forest Soil	NLPMGRWSGDGGACLSVAFDQCDLVVGCGHGQFPPPVIRADGTFEVSGTYRIEAGPISINPAPPAVFSGLVTGETVTLSVTPSDPSLRPASSVLQLTNASGKCVVPCV*
Ga0134127_125500432	3300010399	Terrestrial Soil	GCLSVAVDGCDLVVGCGHGQFKPPVVHSDGTFEVSGTYRIEVGPISIDPAPPATFSGIVRGQTMLITVTPSDRSVVPASYVLHLTNASGKCAVPCL*
Ga0134121_109247651	3300010401	Terrestrial Soil	LPAGRWAGDSACLSVADGGCNLVVGCGHGQFARPVLRADGTFEVAGTYRIEAGPVSIDPAPPATFSGALKGGTLTLTVRPADPSLQTGSYALRFTDSTAKCTVPCV*
Ga0137391_114966931	3300011270	Vadose Zone Soil	DTTLPTGRWTGDGGCLSVAVDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEAGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTNASGKCAVPCV*
Ga0137365_102218621	3300012201	Vadose Zone Soil	VTDEGCDLVVGCGHGQFSRPTVHPDGTFAADGTYRIEAGPISINPAPPAKFSGVLTANTLTVSVVPSDTSLRPASYTLRLTNGSGRCAVPCL*
Ga0137370_107911261	3300012285	Vadose Zone Soil	VTDEACDLVVGCGHGQFPRPAVHPDGTYAADGTYRIEAGPISINPAPPAKFSGVLTASTLTVRVVPGDTSLRPASYTLRLTNGSGTCAVPC
Ga0137384_103432202	3300012357	Vadose Zone Soil	LPTGRWTGDACLSAAADGCDLVVGCGHGQFPAPAVHADGTFEVNGTYRIEVGPVSIDPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLQLTNGTGKCAVTCA*
Ga0137385_101575912	3300012359	Vadose Zone Soil	VPAPGHRHSPATRPCPRVDGPGDGPCLSVAADGCDLVVGCGHGQFPAPAVHADGTFEVNGTYRIEVGPVSIDPAPPAMFSGVLNGQTLTLSVPPSDPSLRPASYVLQLTNGTGKCAVTCA
Ga0137375_101054942	3300012360	Vadose Zone Soil	QFPLPVVRAGGKFEIDGTYRIEAGPISINPAPPARFSGILRGETLTVSVTPSDPSLRPTSYVLQLTNASGKCAVPCL*
Ga0137397_112187412	3300012685	Vadose Zone Soil	RWADDAACLSVADQGCDFVAGCGHGRFPPPAVGRDGTFTVDGTYRIEAGPISIEPAPPATFSGIVSGSTITLAVIPRDPALRPASYVLHLTNASGRCGVPCV*
Ga0157289_100912072	3300012903	Soil	VGRWTGDGGCLSVAVDSCDLVVGCAHGQFAQPDVHGDGTFEVNGTYRIEAGPISINPAPPATFSGVVKGQTLTLSVMPGDPSLRPASYVLQLTNGRGKCAVPCL*
Ga0137394_102492971	3300012922	Vadose Zone Soil	GRWTGDGACLSVAVDGCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPSDPSLRPASYVLQLTNGAGKCAVPCV*
Ga0137394_110524811	3300012922	Vadose Zone Soil	HGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAVFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTSASGKCAVPCV*
Ga0137359_112704972	3300012923	Vadose Zone Soil	DRTFDVNGTYRIEAGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYVLQLTNGSGKCAVPCV*
Ga0137404_117277171	3300012929	Vadose Zone Soil	VDGCDLVVGCGHGQFPPPVVHADGTFQVNGTYRIEVGPISINPAPPAIFSGTLRGQTLMLSVTPSNPSLRPASYTLQLTNGSGKCAVPCV*
Ga0164298_114150771	3300012955	Soil	TYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPSDPSLRPASYVLQLTSGTGKCSVPCV
Ga0134087_107055642	3300012977	Grasslands Soil	VGCGHGQFPPPAVRADGTFEVNGTYRIEVGPISINPAPPAMFSGVLRGQTLTLSVTPSDPSLRPASYALQLTNASGKCAVPCV*
Ga0164308_120127881	3300012985	Soil	LSVAADGCDLVAGCGHGQFAQPHVLADGTFTVNATYRIEVGPVSVNPAPPATFSGVVSGQTLTLSVAPSDPSLRPASYVLQLTNSTLKCAVPCV*
Ga0163162_108535211	3300013306	Switchgrass Rhizosphere	VGRWTGDGGCLSVAVDGCDLVVGCGHGQFAQPDVHGDGTFEVNGTYRIEAGPISTNPAPPATFSGVLKGQTLTLSVVPSDPSLRPASYVLQLTNV
Ga0157375_107404571	3300013308	Miscanthus Rhizosphere	MPTQPRDTTLPTGRWTGDGACLSVAVDDCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPSDPPQRPASYVLQLTNGTGKCPVPCV*
Ga0163163_103073371	3300014325	Switchgrass Rhizosphere	NGTYRIEVGPISINPAPPATFTGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVLCV*
Ga0157376_115819821	3300014969	Miscanthus Rhizosphere	DVHGDGTFEVNGTYRIEAGAISSNPSPPATFSGVLKGQTLTLSVMPSDPSLRAASYVLQLTSVTGKCTVPCL*
Ga0173480_108168901	3300015200	Soil	VGRWTGDGGCLSVAVDGCDLVVGCGHGQFAQPDVHGDGTFEVNGTYRIEAGPISTNPAPPATFSGVLKGQTLTLSVVPSDPSLRPASYVL
Ga0132256_1023609362	3300015372	Arabidopsis Rhizosphere	RDTTLPAGRWTGDGACLSVGADGCDLVVGCGHGQFPSPAVRSGGTFEVNGTYRIEAGPISINPAPPAMFSGVEKGQTLTLSVMPSDPSLRPAFYVLQLTNGTGKCAVPFL*
Ga0132255_1036856511	3300015374	Arabidopsis Rhizosphere	VAQDGCDLVVGCGHGRFPVPAIRADGTFTVDGTYRIEAGPVSVNPPPAAMFSGTVGGQTLTLNVIPSDPSLRPASYVMQLTNASGRCSVPCV*
Ga0182037_113719912	3300016404	Soil	PTRSSGTALPTGRWTGDGVCLSVAPEGCDLVVGCGHGQFARPVLQADGKFEIDGTYRIEAGPISINPAPPAIFSGILRGQTLTLSVTPSDPSLRPGSLVLQLTNASGKCAVPCV
Ga0066669_102458752	3300018482	Grasslands Soil	VHAGNTFQINGTYRIEVGPININPAPPAMFSGVLNGQTLTLSVTPSDPSLRPASYVLQLTNGTGKCAVPCV
Ga0173481_104137021	3300019356	Soil	HGQFPSPVVHADGTFEVGGTFRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLHLTNASGKCAVPCL
Ga0193723_10581853	3300019879	Soil	DGCDLVVGCGHGQFAQPDVHADGTFATSGTYRIEVGPISINPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYMLQLTNGAGKCAVPCV
Ga0207688_106983801	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	NNGCLSVAVDGCDLVVGCGHGQFPSPVVHADGTFEVGGTFRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLHLTNASGKCAVPCL
Ga0207705_113409392	3300025909	Corn Rhizosphere	PAVHADGTFAVNGTYRIEVGPISINPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNGAGKCTVPCL
Ga0207657_100263594	3300025919	Corn Rhizosphere	MGDGACVSAAVDGCDLVVGCGHGQFPPPTVHADGTFEVNGTYRIEVGFISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNGTGKCTVPCL
Ga0207652_103297012	3300025921	Corn Rhizosphere	MGDGACVSAAVDGCDLVVGCGHGQFPPPTVHADGTFEVNGTYRIEVGPISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNGAGKCTVPCL
Ga0207646_110409492	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	PAVRADGTFEVSGTYRIEVGPVSIDPAPPAMFSGVLRGQTLTLSVTPSNPSLRPGSYALQLTNTSGKCAVPCV
Ga0207659_108433032	3300025926	Miscanthus Rhizosphere	ACLSVAVDGCDLVVGCAHGQFAQPDVHGDGTFEVNGTYRIEAGPISINPAPPATFSGVVKGQTLTLSVMPGDPSLRPASYVLQLTNGRGKCAVPCL
Ga0207701_114132612	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TGDGACLSVAVDGCDLVVGCGHGQFAQPDVRQDGTFAVNGTYRIEVGPVTVNPAPPATFSGVLKGQTLTLSVMPSDPSLRPASYVLQLTNSTGKCAVPCL
Ga0207690_118734341	3300025932	Corn Rhizosphere	DGTFEVNGTYRIEVGPISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLTLTNGTGKCTVPCL
Ga0207691_104694422	3300025940	Miscanthus Rhizosphere	VAVDGCDLVVGCAHGQFAQPDVRGDGTFEVNGTYRIEAGPISINPAPPATFSGVVKGQTLTLSVMPGDPSLRPASYVLQLTNGRGKCAVPCL
Ga0207691_108208911	3300025940	Miscanthus Rhizosphere	CGHGQFPSPVVHADGTFEVGGTYRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSGLPASYVLHLTNASGKCAVPCL
Ga0207667_113319261	3300025949	Corn Rhizosphere	GTSTQPRETTLPTGRWMGDGACMFAAVDGCDLVVGCGHGQFPPPTVHADGTFEVNGTYRIEVGPISVNPAPPAMFSGVLKGQTLTLSVTPSDPSLRPASYVLKLTNGTGKCTVPCL
Ga0207651_115190621	3300025960	Switchgrass Rhizosphere	ACLSVAVDDCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPKATFSGVLSGQTLTLSVAPSDPPQRPASYVLQLTNGTGKCSVPCV
Ga0207641_106636881	3300026088	Switchgrass Rhizosphere	AADGCDLVVGCGHGQFPPPVVRADGTFEVNGTYRIEVGPISINPAPPATFSGILKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCL
Ga0207641_106659752	3300026088	Switchgrass Rhizosphere	VAADGCDLVVGCGHGQFPSPVVRADGTFEVNGTYRIEVGPISINPAPPATFSGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCV
Ga0207675_1013679522	3300026118	Switchgrass Rhizosphere	TTLPAGRWTGNNGCLSVAVDGCDLVVGCGHGQFPSPVVHADGTFEVGGTFRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLQLTNASGKCAVPCL
Ga0209468_11426902	3300026306	Soil	WAGDGGCLSVAVDGCDLVVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPITISPAPPAMFSGVLRGQTLTLSVTPGDPSLRPASYVLQLTNASGKCAVPCV
Ga0209375_12637611	3300026329	Soil	VVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPITISPAPPAMFSGVLRGQTLTLSVTPGDPSLRPASYVLQLTNASGKCAVPCV
Ga0209690_11252721	3300026524	Soil	GQFPPPVVHADGTFEINGTYRIEVGPVSINPAPPAVFSGILRGQTLTLSVTPSDPSLRPASYVLQLTNASGKCAVPCV
Ga0209807_11861172	3300026530	Soil	LSVAADGCDLVVGCGHGQFPSPVVHADGTFEVNGTYRTEVGPISINPAPPAMFSGVLKGQTLMISVTPSDPSLRPASYVLQLTHGTGKCAVPCV
Ga0209056_105377362	3300026538	Soil	TPTQPRNTTLPTGRWAGDGGCLSVAVDGCDLVVGCGHGQFPPPVVHADGSFEVNGTYRIEVGPISINPAPPAVFSGVLRGQTLALSVTPSDPSLRAASYVLQLTNASGKCAVPCV
Ga0209805_11735043	3300026542	Soil	VVGCGHGQFPPPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLSSQTLTLSVTPIDPSLRPASYVLQLTNASGKCAVPCV
Ga0268265_103999382	3300028380	Switchgrass Rhizosphere	HADGTFEVGGTFRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLHLTNASGKCAVPCL
Ga0307282_106545391	3300028784	Soil	GRWTGDGACLSVAVDGCDLVVGCGHGQFPSPVVHAANTFQINGTYRIEVGPISINPAPPAMFSGVLNGQTLTLSVTPGDSSLRSASYVLQLTNGTGKCAVPCV
Ga0307284_101759041	3300028799	Soil	LVAGRWSGGGACLSVASEGCDLVVGCGHGQFAMPVVAADGTFQISGTYRIEAGPVSVNPAPPATFAGSVSGGTLTLTVTPTDPSLRPASYVLQLASGSGRCAVPCL
Ga0307305_101904172	3300028807	Soil	VHAANTFQINGTYRIEVGPISINPAPPAMFSGVLNGQTLTLSVTPGDSSLRSASYVLQLTNGTGKCAVPCV
Ga0307497_102770491	3300031226	Soil	PDLHADGTFAVSGTYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPSDPSPRPASYVLQLTNGTGKCSVPCV
Ga0308194_100360661	3300031421	Soil	GDGGCLSVAVDGCDLVVGCGHGQFQPPVVHADGTFAVNGTYRIEVGPISINPAPPAMFSGVLNGQTLTLSVTPGDSSLRSASYVLQLTNGTGKCAVPCV
Ga0310813_102887561	3300031716	Soil	RWTGNGPCLSVAADVCDLVVGCGHGQFPPPVVRADGTFEVNGTYRIEVGPISIDPAPPAMFSGVLKGQTLTISVTPSDPSLRPASYVLQLTNGTGKCSVPCL
Ga0307469_101781571	3300031720	Hardwood Forest Soil	VAVDGCDLVVGCGHGQFPPPVVRADGTFEVSGTYRIEAGPISINPAPPALFSGVLKGQTLTLSVIPTDPLLRPASYVLQLTNGSGRCAVPCV
Ga0307468_1018890491	3300031740	Hardwood Forest Soil	LVVGCGHGQFPSPVVHADGTFEVNGTYRIEVGPISINPAPPAMFSGVLKGETLTLSVTPSDPSLRPASYVLQLTNGTGKCAVPCV
Ga0310892_102239911	3300031858	Soil	TGDGACLSAAVDDCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPKATFSGVLSGQTLTLSVAPSDPSLRPASYVLQLTNGTGKCSVPCV
Ga0310892_103346783	3300031858	Soil	TPTQPRDTTLPTGRWTGDGACLSVAVDGCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPTATFSGVLSGQTLTLSVAPSDPSPRPASYVLQLTNGTGKCSVPCV
Ga0310900_100107417	3300031908	Soil	VAADGCDLVVGCGHGQFPPPVVRADGTFEVNGTYRIEVGPISINPAPPATFSGVLKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCV
Ga0310901_101524152	3300031940	Soil	GNNGCLSVAVDGCDLVVGCGHGQFPSPVVHADGTFEVGGTYRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLQLTNASGKCAVPCL
Ga0310885_105434721	3300031943	Soil	VHADGTFEVGGTFRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLHLTNASGKCAVPCL
Ga0310906_101688042	3300032013	Soil	PAGRWTGDNGCLSVAVDGCDLVVGCGHGQFPSPVVHADGTFEVGGTYRIEVGPISIDPAPPAIFSGVVKGQTMLITVTPSDRSVVPASYVLQLTNASGKCAVPCL
Ga0310906_103804523	3300032013	Soil	DDDCDLVVGCGHGQFAQPDVHADGTFAVSGTYRIEVGPISINPAPKATFSGVLSGQTLTLSVAPSDPSLRPASYVLQLTNGTGKCSVPCV
Ga0310890_102342481	3300032075	Soil	FEVNGTYRIEVGPISINPAPPATFSGILKGQTLTLSVMPSDPSLRPASYVLQPTNGTGKCAVPCV
Ga0310889_102733651	3300032179	Soil	ADGTFEVGGTFRIEVGPISIDPAPPAIFSGVVKGQTLTITVAPSDRSVLPASYVLHLTNASGKCAVPCL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065919

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences