Metagenome / Metatranscriptome Family F065911

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F065911
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	52 residues
Representative Sequence	MWRVKGVKDVDSNWMVHWVKVTYDDQVTNYDALVKALAKEGFYVEGEPEYLQ
Number of Associated Samples	74
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.35 %
% of genes near scaffold ends (potentially truncated)	25.98 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.843 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (42.520 % of family members)
Environment Ontology (ENVO)	Unclassified (44.094 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (47.244 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.50% β-sheet: 0.00% Coil/Unstructured: 52.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00578	AhpC-TSA	7.96
PF01494	FAD_binding_3	4.42
PF14714	KH_dom-like	3.54
PF02775	TPP_enzyme_C	3.54
PF00581	Rhodanese	1.77
PF01862	PvlArgDC	0.88
PF07592	DDE_Tnp_ISAZ013	0.88
PF03358	FMN_red	0.88
PF01613	Flavin_Reduct	0.88
PF00491	Arginase	0.88
PF00211	Guanylate_cyc	0.88
PF10017	Methyltransf_33	0.88
PF01556	DnaJ_C	0.88
PF12844	HTH_19	0.88
PF02776	TPP_enzyme_N	0.88
PF01548	DEDD_Tnp_IS110	0.88
PF00027	cNMP_binding	0.88
PF00301	Rubredoxin	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	8.85
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	4.42
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	4.42
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	4.42
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.88
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.88
COG1945	Pyruvoyl-dependent arginine decarboxylase	Amino acid transport and metabolism [E]	0.88
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
All Organisms	root	All Organisms	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
cellular organisms	root	All Organisms → cellular organisms	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.16 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.47 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.79 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	20.47 %
Candidatus Cloacimonetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	20.47 %
unclassified Candidatus Cloacimonetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Syntrophorhabdales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales	3.94 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.36 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.57 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	0.79 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.79 %
Deltaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Syntrophorhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae	3.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.57 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.79 %
Candidatus Desulfacyla	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla	0.79 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	0.79 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.79 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.79 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Syntrophorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus	3.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.57 %
Candidatus Desulfacyla euxinica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica	0.79 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.79 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	0.79 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.79 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.79 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Syntrophorhabdus aromaticivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	3.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.57 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	0.79 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.79 %
Candidatus Desulfacyla euxinica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica	0.79 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.79 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.79 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.84 %
Syntrophorhabdus aromaticivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	3.94 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.57 %
Arthrobacter sp. Hiyo1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo1	0.79 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	0.79 %
Candidatus Desulfacyla euxinica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica	0.79 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	0.79 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.79 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_101814990	Not Available	693	Open in IMG/M
3300001213\|JGIcombinedJ13530_101814990	Not Available	693	Open in IMG/M
3300001213\|JGIcombinedJ13530_106855923	Not Available	890	Open in IMG/M
3300001213\|JGIcombinedJ13530_106855923	Not Available	890	Open in IMG/M
3300001213\|JGIcombinedJ13530_107274906	Not Available	772	Open in IMG/M
3300003218\|JGI26339J46600_10064333	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300003218\|JGI26339J46600_10122544	Not Available	621	Open in IMG/M
3300004152\|Ga0062386_100002068	All Organisms → cellular organisms → Bacteria	13479	Open in IMG/M
3300004152\|Ga0062386_100002068	All Organisms → cellular organisms → Bacteria	13479	Open in IMG/M
3300004152\|Ga0062386_100317240	Not Available	1245	Open in IMG/M
3300006224\|Ga0079037_100000423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	18923	Open in IMG/M
3300006224\|Ga0079037_100000423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	18923	Open in IMG/M
3300006224\|Ga0079037_101101681	Not Available	788	Open in IMG/M
3300009091\|Ga0102851_11450318	Not Available	764	Open in IMG/M
3300009091\|Ga0102851_11450318	Not Available	764	Open in IMG/M
3300009091\|Ga0102851_12979817	Not Available	544	Open in IMG/M
3300009146\|Ga0105091_10599067	Not Available	569	Open in IMG/M
3300009167\|Ga0113563_11358256	Not Available	833	Open in IMG/M
3300009167\|Ga0113563_12488321	Not Available	624	Open in IMG/M
3300009167\|Ga0113563_13956517	Not Available	502	Open in IMG/M
3300009179\|Ga0115028_10158754	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300010339\|Ga0074046_10287961	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1012	Open in IMG/M
3300010341\|Ga0074045_10675248	Not Available	657	Open in IMG/M
3300013088\|Ga0163200_1302759	Not Available	504	Open in IMG/M
3300014155\|Ga0181524_10407008	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	593	Open in IMG/M
3300014502\|Ga0182021_10847067	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1098	Open in IMG/M
3300017925\|Ga0187856_1306448	Not Available	546	Open in IMG/M
3300017929\|Ga0187849_1065162	Not Available	1639	Open in IMG/M
3300017929\|Ga0187849_1153763	Not Available	926	Open in IMG/M
3300017939\|Ga0187775_10517287	Not Available	511	Open in IMG/M
3300017940\|Ga0187853_10416118	Not Available	593	Open in IMG/M
3300017959\|Ga0187779_10438803	Not Available	857	Open in IMG/M
3300017959\|Ga0187779_10438803	Not Available	857	Open in IMG/M
3300017959\|Ga0187779_10671753	Not Available	698	Open in IMG/M
3300017961\|Ga0187778_10195670	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
3300017966\|Ga0187776_10888070	Not Available	646	Open in IMG/M
3300017973\|Ga0187780_10962123	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300017973\|Ga0187780_11154812	Not Available	567	Open in IMG/M
3300017973\|Ga0187780_11243516	Not Available	546	Open in IMG/M
3300017974\|Ga0187777_11062556	Not Available	588	Open in IMG/M
3300017974\|Ga0187777_11141471	Not Available	568	Open in IMG/M
3300018004\|Ga0187865_1043103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1861	Open in IMG/M
3300018013\|Ga0187873_1186275	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300018015\|Ga0187866_1123606	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1037	Open in IMG/M
3300018019\|Ga0187874_10169048	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	918	Open in IMG/M
3300018020\|Ga0187861_10153187	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1062	Open in IMG/M
3300018023\|Ga0187889_10164639	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1041	Open in IMG/M
3300018024\|Ga0187881_10359140	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	599	Open in IMG/M
3300018057\|Ga0187858_10634725	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	642	Open in IMG/M
3300018058\|Ga0187766_11324219	Not Available	526	Open in IMG/M
3300018062\|Ga0187784_10964493	Not Available	678	Open in IMG/M
3300018085\|Ga0187772_10999022	Not Available	611	Open in IMG/M
3300018088\|Ga0187771_11727992	Not Available	531	Open in IMG/M
3300019252\|Ga0172286_1028447	Not Available	525	Open in IMG/M
3300019284\|Ga0187797_1894497	Not Available	610	Open in IMG/M
3300020067\|Ga0180109_1113048	Not Available	660	Open in IMG/M
3300020067\|Ga0180109_1113048	Not Available	660	Open in IMG/M
3300025864\|Ga0209429_10365747	Not Available	537	Open in IMG/M
3300026463\|Ga0256815_1043849	Not Available	562	Open in IMG/M
3300026485\|Ga0256805_1055421	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	530	Open in IMG/M
3300026927\|Ga0207744_1030438	Not Available	500	Open in IMG/M
3300027680\|Ga0207826_1158823	Not Available	616	Open in IMG/M
3300027715\|Ga0208665_10071518	All Organisms → cellular organisms → Bacteria	1040	Open in IMG/M
3300027825\|Ga0209039_10002726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	14628	Open in IMG/M
3300027825\|Ga0209039_10002726	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	14628	Open in IMG/M
3300027825\|Ga0209039_10016381	All Organisms → cellular organisms → Bacteria	3930	Open in IMG/M
3300027887\|Ga0208980_10826756	Not Available	517	Open in IMG/M
3300032173\|Ga0315268_11970016	Not Available	598	Open in IMG/M
3300032782\|Ga0335082_10732894	Not Available	850	Open in IMG/M
3300032782\|Ga0335082_10732894	Not Available	850	Open in IMG/M
3300032782\|Ga0335082_11533608	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300032783\|Ga0335079_10614842	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	1145	Open in IMG/M
3300032828\|Ga0335080_10345571	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → Candidatus Desulfacyla → Candidatus Desulfacyla euxinica	1606	Open in IMG/M
3300032828\|Ga0335080_11980563	Not Available	564	Open in IMG/M
3300032829\|Ga0335070_10015239	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	8938	Open in IMG/M
3300032829\|Ga0335070_10022933	All Organisms → cellular organisms → Bacteria	7186	Open in IMG/M
3300032829\|Ga0335070_10022933	All Organisms → cellular organisms → Bacteria	7186	Open in IMG/M
3300032892\|Ga0335081_10396651	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300032892\|Ga0335081_10396651	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300032892\|Ga0335081_11480404	Not Available	753	Open in IMG/M
3300032892\|Ga0335081_11618434	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300032893\|Ga0335069_10196074	All Organisms → cellular organisms → Bacteria	2464	Open in IMG/M
3300032893\|Ga0335069_11132858	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	860	Open in IMG/M
3300032897\|Ga0335071_10011031	All Organisms → cellular organisms → Bacteria	9243	Open in IMG/M
3300032897\|Ga0335071_10371098	Not Available	1384	Open in IMG/M
3300032897\|Ga0335071_10814935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo1	882	Open in IMG/M
3300032897\|Ga0335071_11263263	Not Available	683	Open in IMG/M
3300032897\|Ga0335071_11310551	Not Available	669	Open in IMG/M
3300033004\|Ga0335084_10115386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2792	Open in IMG/M
3300033004\|Ga0335084_10115386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2792	Open in IMG/M
3300033004\|Ga0335084_10485142	Not Available	1270	Open in IMG/M
3300033004\|Ga0335084_11211769	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300033004\|Ga0335084_11955966	Not Available	572	Open in IMG/M
3300033158\|Ga0335077_10957169	Not Available	858	Open in IMG/M
3300033233\|Ga0334722_10142320	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300033402\|Ga0326728_10183758	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300033406\|Ga0316604_10252234	Not Available	958	Open in IMG/M
3300033408\|Ga0316605_10012643	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	5094	Open in IMG/M
3300033408\|Ga0316605_10820659	Not Available	885	Open in IMG/M
3300033408\|Ga0316605_10820659	Not Available	885	Open in IMG/M
3300033413\|Ga0316603_11577780	Not Available	622	Open in IMG/M
3300033414\|Ga0316619_10002988	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → Syntrophorhabdus → Syntrophorhabdus aromaticivorans	5466	Open in IMG/M
3300033414\|Ga0316619_10196392	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1446	Open in IMG/M
3300033416\|Ga0316622_101903348	Not Available	692	Open in IMG/M
3300033416\|Ga0316622_102970199	Not Available	541	Open in IMG/M
3300033418\|Ga0316625_100968779	Not Available	753	Open in IMG/M
3300033433\|Ga0326726_10738804	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	951	Open in IMG/M
3300033433\|Ga0326726_11759210	Not Available	604	Open in IMG/M
3300033433\|Ga0326726_11759210	Not Available	604	Open in IMG/M
3300033434\|Ga0316613_10912979	Not Available	604	Open in IMG/M
3300033480\|Ga0316620_10734090	Not Available	942	Open in IMG/M
3300033481\|Ga0316600_11266549	Not Available	524	Open in IMG/M
3300033482\|Ga0316627_101986151	Not Available	603	Open in IMG/M
3300033483\|Ga0316629_11669211	Not Available	523	Open in IMG/M
3300033486\|Ga0316624_10579227	Not Available	973	Open in IMG/M
3300033486\|Ga0316624_10831510	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	823	Open in IMG/M
3300033486\|Ga0316624_11070561	Not Available	729	Open in IMG/M
3300033493\|Ga0316631_10095925	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300033513\|Ga0316628_100519654	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300033513\|Ga0316628_101042968	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300033513\|Ga0316628_101543813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	885	Open in IMG/M
3300033513\|Ga0316628_101829156	Not Available	808	Open in IMG/M
3300033521\|Ga0316616_101414650	Not Available	897	Open in IMG/M
3300033521\|Ga0316616_102195558	Not Available	735	Open in IMG/M
3300033521\|Ga0316616_104578977	Not Available	520	Open in IMG/M
3300033557\|Ga0316617_101771441	Not Available	630	Open in IMG/M
3300033557\|Ga0316617_102243553	Not Available	564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.78%
Aquatic	Environmental → Aquatic	36.22%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.84%
Freshwater	Environmental → Aquatic → Freshwater	31.50%
Marine	Environmental → Aquatic → Marine	4.72%
Peat	Environmental → Terrestrial → Peat	3.15%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.79%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	57.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.20%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.15%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.94%
Lake	Environmental → Aquatic → Freshwater → Lake	2.36%
Loam	Environmental → Terrestrial → Soil → Loam	1.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.79%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	56.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.09%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	4.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.57%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.79%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.79%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.79%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	42.52%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	11.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.45%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	7.09%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.30%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	4.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.15%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.57%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.57%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	1.57%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.79%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.79%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.79%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.79%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.79%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019252	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_deep_8_15_core_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020067	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025864	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes)	Environmental	Open in IMG/M
3300026463	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS6	Environmental	Open in IMG/M
3300026485	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 F6	Environmental	Open in IMG/M
3300026927	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 56 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1018149901	3300001213	Wetland	MIHWIKVTYDDQVTNYDALVKALAKQGFYVEGEPEYLQ*
JGIcombinedJ13530_1018149903	3300001213	Wetland	NWMLHTMKVTFDDQVTNFDALVKALSKEGFEVQGEPEYLEPEKPK*
JGIcombinedJ13530_1068559232	3300001213	Wetland	MWRTKGVKDVDSNWMLHWVKVTYDDQVTDVETLIKNLAKEGFYVEGKPEFLQ*
JGIcombinedJ13530_1068559233	3300001213	Wetland	MWRTKGVKDVDSNWMLHWIKVTYDDEVTTVDTLIKNLAHEGFNVLGQPEFLQ*
JGIcombinedJ13530_1072749062	3300001213	Wetland	MIHWVKATYDDQVTSVDALIKALAKDGFYVEGEPEFLQ*
JGI26339J46600_100643334	3300003218	Bog Forest Soil	WMIHWMKATYDDQVTNYDALVKALAKEGFYVEGEPEYLEPEDPE*
JGI26339J46600_101225442	3300003218	Bog Forest Soil	NWMIHWMKVTYDDQVTNYDELVKALAKEGFYVEGEPEYLQ*
Ga0062386_10000206810	3300004152	Bog Forest Soil	VDSNWLVHWMKVTYDDKVTNYDALVKALAHEGFYVEGQPEYLEPEPEE*
Ga0062386_10000206812	3300004152	Bog Forest Soil	VTEQWARAALRRVEGVKDVDSNWMIHWMKVTYDDQVTNYDELVKALAKEGFYVEGEPEYLQ*
Ga0062386_1003172403	3300004152	Bog Forest Soil	MKATYDDQVTNYDALVKALAKEGFYVEGEPEYLEPEDPE*
Ga0079037_10000042312	3300006224	Freshwater Wetlands	MWRTKGVKDVDSNWMLHWIKVTYDDEVVTHEALIKVLANEGFHVKGEPEFLK*
Ga0079037_10000042314	3300006224	Freshwater Wetlands	MWRTKGVKEVDSNWMLHWIKVTYDDQVVSVETLIKNLAKEGFYVKGEPEFLQ*
Ga0079037_1011016812	3300006224	Freshwater Wetlands	MWRTKGVKDVDSNWMLHWVKVTYDDEVVSVETLIKNLEQEGFPLIGEPEFLK*
Ga0102851_114503181	3300009091	Freshwater Wetlands	TETWARDAMWRTKGVKDVDSNWMLHWVKVTYDDQVVNVETLIKNLAKEGFYVEGQPEFLN
Ga0102851_114503182	3300009091	Freshwater Wetlands	MWRTKGVKDVDSNWMIHWVKVTYDDQVVNVETLIKNLANEGFNLTSPPEFLE*
Ga0102851_129798171	3300009091	Freshwater Wetlands	TETWARDAMWRTKGVKDVDSNWMLHWIKVTYDDEVTTVDTLIKNLAHEGFNVLGQPEFLQ
Ga0105091_105990672	3300009146	Freshwater Sediment	VKDVDSNWMIHWVKVTYDDQVTNLDALIKALDKEGFYVEGKPEFLQ*
Ga0113563_113582563	3300009167	Freshwater Wetlands	MWRTKGVKDVDSNWMLHWVKVTYDDEVVSVETLIKNLAKEGFHVEGQPEFLK*
Ga0113563_124883212	3300009167	Freshwater Wetlands	MWRTKGVKDVDSNWMLHWMKVTYDDQVVSVEELIKILAKDGFNVKGEPKFLK*
Ga0113563_139565171	3300009167	Freshwater Wetlands	MKVTYDDEVTNLDALIKALDKEGFYVEGQPEFLQ*
Ga0115028_101587542	3300009179	Wetland	VDSNWMLHWIKVTYDDEVVTHEALIKVLANEGFHVKGEPEFLK*
Ga0074046_102879613	3300010339	Bog Forest Soil	VTEHWARDALWGVKGVKDVDSNWMIHWMKATYDDQVTNYDALVKALAKEGFYVEGEPEYLEPESPE*
Ga0074045_106752482	3300010341	Bog Forest Soil	VTEHWARDALYRVKGVKDVDSNWMVHWVKVTYDDQVTNFDAMVKALAKEGFRVEGQPEYLEPEPPEED*
Ga0163200_13027592	3300013088	Freshwater	MWRTKGVKDVDSNWMLHWIKVTYDDQVTTVETLIKNLLKEGFYVEGQPEFLQ*
Ga0181524_104070081	3300014155	Bog	VTEHWARDALWGVKGVKDVDSNWMIHWMKVTYDDQVTNYDALVKALAKEGFYVEGEPEYLEPESPE*
Ga0182021_108470672	3300014502	Fen	VTESWARDALWRVKGVKDVDSNWMIHWVKVTYDDQVTNYDALVKALAKEGFYVEGEPEYLQ*
Ga0187856_13064482	3300017925	Peatland	VTEHWARDALWGVKGVKDVDSNWMVHWMKVTYDDQVTNYDALVKALAKEGFYVEGEPEYLEPESPE
Ga0187849_10651622	3300017929	Peatland	VTEHWARDALYRVKGVKDVDSNWMVHWMKVTYDDQVTNFDALVKALAKEGFQVEGQPEYLEPEPPEED
Ga0187849_11537632	3300017929	Peatland	VKDVDSNWMIHWMKVTYDDQVTNYDALVKALGKEGFYVEGEPEYLQ
Ga0187775_105172871	3300017939	Tropical Peatland	VKDVDSNWLVHWMKVTYDDQVTTYDALVKALAKEGFQVEGQPEYLEPEPEE
Ga0187853_104161181	3300017940	Peatland	VKDVDSNWMIHWMKVTYDDQITNYDALVKALAKEGFYVEGEPEYLEPEDPG
Ga0187779_104388032	3300017959	Tropical Peatland	VTEKWARDALWRVKGVKDVDSNWMVHWMKVTYDDQITNFDALVKALAKEGFYVEGEPEYL
Ga0187779_104388033	3300017959	Tropical Peatland	MWRTKGVKDVDSNWMVHWMKVTYDDQVTNFDALVKALAKEGFQVEGQPEYLEPEPPEED
Ga0187779_106717531	3300017959	Tropical Peatland	PVTEHWARDALWRVKGVKDVDSNWMIHSMKVTYDDQVTNYDALVKALAKEGFYVEGEPEYLEPEPAE
Ga0187778_101956702	3300017961	Tropical Peatland	MIHWMKITYDDQITNYDALVQALAKEGFYVEGEPEYLHPMGEP
Ga0187776_108880702	3300017966	Tropical Peatland	VKDVDSNWLVHWMKVTYDDQVTTYDALVKALAKEGFQVEGQPEYLEPEESE
Ga0187780_109621231	3300017973	Tropical Peatland	DSNWMIHWMKITYDDQITNYDALVQALAKEGFYVEGEPVYLHSMEEP
Ga0187780_111548121	3300017973	Tropical Peatland	MWRTKGVKDVDSNWMIHWMKVTYDDQVTSFDALVKALAHEGFLVQGEPEYLEPDSEE
Ga0187780_112435161	3300017973	Tropical Peatland	MKVTYDDKVTNYDTLVKALAHEGFQVEGQPEYLEPEPEE
Ga0187777_110625562	3300017974	Tropical Peatland	MWRTKGVKDVDSNWMVHWMKVTYDDQVTNYDALVKALAKEGFYVEGQPEYLQPEGSE
Ga0187777_111414712	3300017974	Tropical Peatland	VTEKWARDALWRVKGVKDVDSNWMIHWVKVTYDDQVTNYDELVKALAHEGFYVEGEPEYL
Ga0187865_10431033	3300018004	Peatland	DVDSNWMIHWMKVTYDDEVTNFDALVKALAKEGFYVEGEPEYLQ
Ga0187873_11862753	3300018013	Peatland	HWMKVTYDDQVTNYDAVVKALGKEGFYVEGEPEYLQ
Ga0187866_11236062	3300018015	Peatland	VKDVDSNWMVHWMKVTYDDQVTNFDALVKALAKEGFQVEGQPEYLKAEESE
Ga0187874_101690483	3300018019	Peatland	VTESWARDALWRVKGVKDVDSNWMIHWMKVTYDDQVTNYDALVKALGKEGFYVEGEPEYL
Ga0187861_101531873	3300018020	Peatland	VTEHWARDALYRVKGVKDVDSNWMVHWMKVTYDDQVTNFDALVKALAKEGFYVEGEPEYL
Ga0187889_101646393	3300018023	Peatland	MIHWMKVTYDDEVTNFDALVKALAKEGFYVEGEPEYLQ
Ga0187881_103591401	3300018024	Peatland	WMKVTYDDQITNYDALVKALAKEGFYVEGEPEYLEPEDPG
Ga0187858_106347251	3300018057	Peatland	KDVDSNWMIHWMKVTYDDQVTNYDALVKALGKEGFYVEGEPEYLQ
Ga0187766_113242192	3300018058	Tropical Peatland	MWRTKGVKDVDSNWMVHWMKVTYDDQVTNFDALVKALSKAGFEVEGQPEYLKPDGSE
Ga0187784_109644931	3300018062	Tropical Peatland	VTEQWARDALWRVKGVKDVDSNWMIHWVKVTYDDQVTSYDALVKALAHEGFYVTGEPEYLEPEPEE
Ga0187772_109990221	3300018085	Tropical Peatland	MWRTKGVKDVDSNWMVHWMKVTFDDQVTSYDALVKALAKEGFYVQGQPEYLEPEDQE
Ga0187771_117279921	3300018088	Tropical Peatland	VKDVDSNWLVHWMKVTYDDQLTSYDALVKALAKEGFYVEGKPAYLEPEPEE
Ga0172286_10284471	3300019252	Wetland	MWRVKGVKDVDSNWMLHWVKVTYDDQVTNVDALVKALAKEGFYVEGEPEFLQ
Ga0187797_18944972	3300019284	Peatland	MWRVKGVKDVDSNWMIHWVKVTYDDQVTNYDALVKALGKEGFVVKGEPEYLEPEPEE
Ga0180109_11130481	3300020067	Groundwater Sediment	MWRTKGVKDVDSNWMLHWMRVTYDDEVVTHEALIKILAKEGFNVKGEPEFLK
Ga0180109_11130482	3300020067	Groundwater Sediment	MWRTKGVKDVDSNWMLHWVKVTYDDQVTNVETLIKNLAKEGFHVRGEPEFLQ
Ga0209429_103657472	3300025864	Arctic Peat Soil	MWRTKGVKDVDSNWMLHLLWVTYDDQVTSLDEIKKSLDKAGFYVEGEPEFLK
Ga0256815_10438492	3300026463	Sediment	VTESWARSALYSVKGVKDVDSNWMIHWMKVTYDDQVTNYDALVQALAKQGFYVEGEPEYL
Ga0256805_10554211	3300026485	Sediment	MVHWMKVTYDDQVTNYDALVKALAKDGFYVEGQPEYLEPGDQE
Ga0207744_10304381	3300026927	Tropical Forest Soil	MWRLKGVKDVDSNWMIHWMKVTYDDQVTNFDAMVKALAKEGFQVQGQPEYLEPKAEEEEE
Ga0207826_11588232	3300027680	Tropical Forest Soil	VKDVDSNWLIHWMKVTYDDQVTNFDAMVKALAKEGFQVQGQPEYLEPKAEEEEE
Ga0208665_100715182	3300027715	Deep Subsurface	MWRTKGVKDVDSNWMLHWIKVTYDDEVVTHEALIKVLANEGFHVKGEPEFLK
Ga0209039_1000272610	3300027825	Bog Forest Soil	VDSNWLVHWMKVTYDDKVTNYDALVKALAHEGFYVEGQPEYLEPEPEE
Ga0209039_100027268	3300027825	Bog Forest Soil	VTEQWARAALRRVEGVKDVDSNWMIHWMKVTYDDQVTNYDELVKALAKEGFYVEGEPEYL
Ga0209039_100163816	3300027825	Bog Forest Soil	VTESWARSALRSVKGVKDVDSNWMIHWMKATYDDQVTNYDALVKALAKEGFYVEGEPEYLEPEDPE
Ga0208980_108267561	3300027887	Wetland	MIHWVKATYDDQVTSVDALIKALAKDGFYVEGEPEFLQ
Ga0315268_119700161	3300032173	Sediment	VKDVDSNWMIHWMKVTYDDQVTNYDALVKALAHEGFYVEGEPEYLQ
Ga0335082_107328941	3300032782	Soil	VKDVDSNWMIHWMKVTYDDQVTSFDALVKALAHEGFVVQGPPEYLEPESDSDE
Ga0335082_107328942	3300032782	Soil	VTEQWARQALWRVKGVKDVDSNWMVHWMKVTYDDQVTNYDELVKALAHEGFYVEGEPEYL
Ga0335082_115336082	3300032782	Soil	GVKDVDSNWMIHWIKIKYDEQITNYDALVQALAKAGFYVQGEPKYLDSTEEPWEE
Ga0335079_106148422	3300032783	Soil	VKDVDSNWMVHWMKVTYDDQVTNFDALVKALSKEGFYVEGEPEYLQ
Ga0335080_103455711	3300032828	Soil	WMKVTYDDQVANFDALVKALAKEGFQVEGQPEYLKPDESE
Ga0335080_119805633	3300032828	Soil	VKDVDSNWMVHWMKVTFDDQVTSYDAIVKALAKEGFYVEGEPEWLQ
Ga0335070_100152394	3300032829	Soil	MWRTKGVKDVDSNWMIHWMKVTYDDQVTSFDALVKALAHEGFVVQGPPEYLEPESDSDE
Ga0335070_100229337	3300032829	Soil	VTEQWARDALYRVKGVKDVDSNWMVHWMKVTYDDQVTNYDELVKALAKEGFYVEGQPEYL
Ga0335070_100229339	3300032829	Soil	VKDVDSNWLIHWMKVTYDDQVTSYDALVKALAKEGFQVEGQPEYLEPEPEE
Ga0335081_103966512	3300032892	Soil	VTEQWARAALRRVNGVKDVDSNWMIHWMKVTYDDQVTNYDELVKALAKEGFYVEGEPEYL
Ga0335081_103966513	3300032892	Soil	RDALWRTKGVKDVDSNWLVHWMKVTYDDKVTSYDALVKALAKEGFQVEGQPEYLEPEPEE
Ga0335081_114804041	3300032892	Soil	VKDVDSNWLVHWMKVTYDDQVTSYDALVKALAKEGFQVEGQPEYLEPEPEE
Ga0335081_116184342	3300032892	Soil	TYDDQVTNFDALVKALGKEGFVVEGKPEYLEPEPEE
Ga0335069_101960743	3300032893	Soil	VKDVDSNWMVHWVKVTYDDQVTSYDALVKALAKEGFYVEGQPEYLEPESDE
Ga0335069_111328581	3300032893	Soil	VKDVDSNWLVHWMKVTYDDQVTTYDALVKALAKEGFQVEGEPEYLKPEEPE
Ga0335071_100110311	3300032897	Soil	MIHWMKVTYDDQVTNYDALVQALAKAGFYVEGQPEYLKPEPEE
Ga0335071_103710983	3300032897	Soil	VTEQWARDAMWRTKGVKDVDSNWMIHWMKVTYDDQVTSFDALVKALAHEGFVVQGPPEYLEPESDSDE
Ga0335071_108149352	3300032897	Soil	VKDVDSNWLVHWMKVTYDDQVTTYDALVKALAKEGFQVEGEPEYLQ
Ga0335071_112632632	3300032897	Soil	VTEQWARDALWRVKGVKDVDSNWMVHWVKVTYDDQVTSYDALVKALAKEGFYVEGQPEYLEPESDE
Ga0335071_113105511	3300032897	Soil	VTEQWARDALWRVKGVKKVDSNWMIHWMKVTYDDELTNYDALVRALAKQGFYLEGQPKYLQPEHEDEE
Ga0335084_101153862	3300033004	Soil	VKDVDSNWMIHWIKVTYDDQVTNYEELVKALAKEGFYVEGEPEYLQ
Ga0335084_101153864	3300033004	Soil	VKDVDSNWMVHWMKVTYDDQVTSFDALVKALAKEGFVVEGQPEYLEPESEE
Ga0335084_104851423	3300033004	Soil	VKDVDSNWMIHWMKVTYDDQVTNYDALVQALAKAGFYVEGQPEYLKPEPE
Ga0335084_112117692	3300033004	Soil	WARDALWRVKGVKDVDSNWMVHWMKVTYDDQVTSYDALVKALAHEGFYVEGQPQYLQPESDE
Ga0335084_119559662	3300033004	Soil	VKSVDSNWMIHWMKVTYDDQVTSYDALVKALAKEGFYVEGEPEYLQPEAEE
Ga0335077_109571692	3300033158	Soil	MWRLKGVKDVDSNWMIHWMKVTYDDQLTNFDAIVKALAKEGFQVQGEPEYLEPETEEE
Ga0334722_101423204	3300033233	Sediment	ARDALQTVKGVTNIASDWFLHWMKVTYDDEITNLDALIKALDKEGFYVEGQPEILQ
Ga0326728_101837583	3300033402	Peat Soil	MIHWMKVTYDDQVTNPDALIKALAKESFYVEGQPEFLQ
Ga0316604_102522342	3300033406	Soil	MWRTKGVKDVDSNWMMHWIKVTYDDEVVTHEALIKVLANEGFHVKGEPEFLK
Ga0316605_100126436	3300033408	Soil	MWRTKGVKEVDSNWMLHWIKVTYDDQVVSVETLIKNLAKEGFYVKGEPEFLQ
Ga0316605_108206592	3300033408	Soil	MWRTKGVKDVDSNWMLHWIKVTYDDQVTNVEALIKNLAKEGFHVEGQPEFLQ
Ga0316605_108206593	3300033408	Soil	MWRTKGVKDVDSNWMLHWMKVTFDDQIVSVDALIKVLAKEGFNIKGEPEFLQ
Ga0316603_115777802	3300033413	Soil	MWRTKGVKDVDSNWMIHWVKVTYDDQVVNVETLIKNLANEGFNLTSPPEFLE
Ga0316619_100029887	3300033414	Soil	VKDVDSNWMLHWIKVTYDDEVVTHEALIKVLANEGFHVKGEPEFLK
Ga0316619_101963921	3300033414	Soil	VKEVDSNWMLHWIKVTYDDQVVSVETLIKNLAKEGFYVKGEPEFLQ
Ga0316622_1019033481	3300033416	Soil	MWRTKGVKDVDSNWMLHWVKVTYDDEVVSVETLIKNLAKEGFHIEGQPE
Ga0316622_1029701991	3300033416	Soil	MWRTKGVKDVDSNWMLHWVKVTYDDQVVNVETLIKNLANEGFNLTSP
Ga0316625_1009687791	3300033418	Soil	MWRTKGVKDVDSNWMMHWIKVTYDDEVVTHEALIKILAKEGFYVKGEPEFVQ
Ga0326726_107388042	3300033433	Peat Soil	VKDVDSNWMIHWMKVTYDDQVTNYDALVKALAKQGFYVEGEPEYLQ
Ga0326726_117592101	3300033433	Peat Soil	VTEGWARDALWRVKGVKDVDSNWMIHWMKVTYDDQVTNYDALVKALAKEGFYVEGEPEYL
Ga0326726_117592103	3300033433	Peat Soil	VHWMKVTYDDQVTNFDAMVKELSKAGFEVEGKPEYLEPESEEDD
Ga0316613_109129792	3300033434	Soil	TKGVKDVDSNWMLHWIKVAYDDQVVSVETLIKNLAKEGFYVKGEPEFLQ
Ga0316620_107340903	3300033480	Soil	MWRTKGVKDVDSNWMLHWVKVTYDDQVVNVETLIKNLAKEGFYVEGQPEFLN
Ga0316600_112665491	3300033481	Soil	MWRTKGVKDVDSNWMLHWVKVTYDDEVVSVETLIKNLAKEGFHVE
Ga0316627_1019861512	3300033482	Soil	MWRVKGVKDVDSNWMLHWVKVTYDDQVTNADALVKALAKEGFYVE
Ga0316629_116692112	3300033483	Soil	VKDVDSNWMIHWVKVTYDDQVVNVETLIKNLANEGFNLTSPPEFLE
Ga0316624_105792272	3300033486	Soil	VKDVDSNWMLHTMKVKYDDQVTNFEAMVKELSKAGFEVEGKPEYLEPEESE
Ga0316624_108315103	3300033486	Soil	MWRVKGVKDVDSNWMVHWVKVTYDDQVTNYDALVKALAKEGFYVEGEPEYLQ
Ga0316624_110705611	3300033486	Soil	VTEQWARQALWGVKGVKDVDSNWMIHWMKVTYDDQVTNVDALIQALAKAGFYVEGKPEFL
Ga0316631_100959251	3300033493	Soil	RTKGVKDVDSNWMLHWIKVTYDDEVVTHEALIKVLANEGFHVKGEPEFLK
Ga0316628_1005196543	3300033513	Soil	VKDVDSNWMLHWVKVTYDDQVVNVETLIKNLAKEGFYVEGQPEFLN
Ga0316628_1010429681	3300033513	Soil	TETWARDAMWRTKGVKDVDSNWMLHWVKVTYDDEVVSVETLIKNLVQEGFPLIGEPEFLK
Ga0316628_1015438131	3300033513	Soil	WARSALYSVKGVKDVDSNWMIHWMKVTYDDQVTNFDALVKSLAKEGFYVEGEPEYLQ
Ga0316628_1018291563	3300033513	Soil	MWRTKGVKDVDSNWMIHWVKVTYDDEVVSVETLIKNLAKEGFYVEGQPEFLQ
Ga0316616_1014146501	3300033521	Soil	MWRTKGVKDVDSNWMLHWIKVTYDDQVTNLETLIKNLAKEGFHVEGQPEFLQ
Ga0316616_1021955581	3300033521	Soil	VTETWARDAMWRTKGVKDVDSNWMLHWVKVTYDDEVVSVETLIKNLEQEGFPVIGEPEFL
Ga0316616_1045789771	3300033521	Soil	MWRTKGVKDVDSNWMLHWMKVTYDDQVTSFDALVKALGKEGFVVEGQPEYLEPEPQE
Ga0316617_1017714411	3300033557	Soil	MWRTKGVKDVDSNWMMHWMKVTFDDQIVSVDALIKVLAKEGFNIKGEPEFLQ
Ga0316617_1022435532	3300033557	Soil	MWRVKGVKDVDSNWMLHWLKVTYDDQVTNVDALVKALAKEGFHVEGEPEFLQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F065911

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences